Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040400 | XP_013469843.1 | 99.308 | 578 | 4 | 0 | 1 | 578 | 1 | 578 | 0.0 | 1194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040400 | sp|Q9STS3|CDC23_ARATH | 74.439 | 579 | 145 | 3 | 1 | 577 | 1 | 578 | 0.0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040400 | A0A072VQG1 | 99.308 | 578 | 4 | 0 | 1 | 578 | 1 | 578 | 0.0 | 1194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040400 | Msa0135090 | 0.802012 | 6.865152e-49 | -8.615850e-47 |
| Msa0040400 | Msa0709440 | 0.802037 | 6.785847e-49 | -8.615850e-47 |
| Msa0040400 | Msa1084530 | 0.804958 | 1.682591e-49 | -8.615850e-47 |
| Msa0040400 | Msa1125990 | 0.801543 | 8.568381e-49 | -8.615850e-47 |
| Msa0040400 | Msa1171290 | 0.804467 | 2.130254e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040400 | MtrunA17_Chr1g0205411 | 99.308 | 578 | 4 | 0 | 1 | 578 | 1 | 578 | 0.0 | 1194 |
| Msa0040400 | MtrunA17_Chr8g0344341 | 86.874 | 579 | 71 | 4 | 1 | 577 | 1 | 576 | 0.0 | 1049 |
| Msa0040400 | MtrunA17_Chr8g0356451 | 75.862 | 87 | 21 | 0 | 418 | 504 | 1 | 87 | 1.41e-41 | 144 |
| Msa0040400 | MtrunA17_Chr6g0456451 | 30.035 | 283 | 189 | 3 | 213 | 495 | 411 | 684 | 5.88e-29 | 122 |
| Msa0040400 | MtrunA17_Chr7g0221321 | 29.221 | 308 | 200 | 5 | 240 | 545 | 434 | 725 | 9.98e-28 | 118 |
| Msa0040400 | MtrunA17_Chr8g0356461 | 78.125 | 64 | 13 | 1 | 516 | 578 | 1 | 64 | 1.03e-27 | 105 |
| Msa0040400 | MtrunA17_Chr2g0286231 | 25.095 | 263 | 194 | 3 | 233 | 495 | 211 | 470 | 7.80e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040400 | AT3G48150.1 | 74.439 | 579 | 145 | 3 | 1 | 577 | 1 | 578 | 0.0 | 918 |
| Msa0040400 | AT3G48150.2 | 75.054 | 465 | 115 | 1 | 114 | 577 | 1 | 465 | 0.0 | 751 |
| Msa0040400 | AT2G20000.1 | 27.476 | 313 | 216 | 3 | 254 | 564 | 434 | 737 | 2.32e-27 | 117 |
| Msa0040400 | AT3G16320.1 | 30.385 | 260 | 171 | 3 | 241 | 495 | 401 | 655 | 1.07e-24 | 109 |
| Msa0040400 | AT3G16320.2 | 30.385 | 260 | 171 | 3 | 241 | 495 | 390 | 644 | 1.15e-24 | 109 |
| Msa0040400 | AT2G20000.2 | 33.155 | 187 | 125 | 0 | 254 | 440 | 434 | 620 | 1.36e-24 | 108 |
| Msa0040400 | AT3G16320.4 | 32.639 | 144 | 95 | 1 | 241 | 382 | 401 | 544 | 9.46e-16 | 80.9 |
| Msa0040400 | AT3G16320.3 | 32.639 | 144 | 95 | 1 | 241 | 382 | 390 | 533 | 1.01e-15 | 80.9 |
Find 124 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAATCTTGTTGTATTAT+TGG | 0.082834 | 1_1:-70558655 | Msa0040400:CDS |
| CCTTTCTTCTATTCTATAAT+TGG | 0.134987 | 1_1:-70557576 | Msa0040400:three_prime_UTR |
| TCTCTCTGCTTGGACACTTA+TGG | 0.199975 | 1_1:-70558554 | Msa0040400:CDS |
| TGGGAATTATTACAGTTTAA+AGG | 0.204204 | 1_1:-70558635 | Msa0040400:CDS |
| CTGAATCTTGTTGTATTATT+GGG | 0.236148 | 1_1:-70558654 | Msa0040400:CDS |
| CTCTCTGCTTGGACACTTAT+GGG | 0.273049 | 1_1:-70558553 | Msa0040400:CDS |
| TTCTGCTCCAGCACAAAGTA+TGG | 0.276789 | 1_1:+70557755 | None:intergenic |
| TATCAGTCATGAATACTCTA+TGG | 0.285092 | 1_1:+70558686 | None:intergenic |
| GGGAATTATTACAGTTTAAA+GGG | 0.286813 | 1_1:-70558634 | Msa0040400:CDS |
| GAATATTTACTCGGAACTTT+TGG | 0.289586 | 1_1:-70558889 | Msa0040400:CDS |
| ACAGAAAGGCAATGATAATT+TGG | 0.300674 | 1_1:-70559103 | Msa0040400:CDS |
| TGCTTCATCAAAAGACATTA+TGG | 0.318712 | 1_1:+70557821 | None:intergenic |
| CATGTTCTTCGTGATCAAAT+TGG | 0.320943 | 1_1:-70561365 | Msa0040400:CDS |
| GTATATTGCTACTCCGGTTA+TGG | 0.327475 | 1_1:-70561468 | Msa0040400:CDS |
| ATAATTGGATAAACAGATTA+GGG | 0.332584 | 1_1:-70557561 | Msa0040400:three_prime_UTR |
| AAGATCTTATGCTCTCTATC+TGG | 0.346201 | 1_1:-70561324 | Msa0040400:intron |
| CAAATTCTTTCAAACTGTAC+TGG | 0.353720 | 1_1:+70558830 | None:intergenic |
| TAAAAGTGATGCGGTGAATC+AGG | 0.366270 | 1_1:-70559217 | Msa0040400:CDS |
| CCAATAATACAACAAGATTC+AGG | 0.368422 | 1_1:+70558655 | None:intergenic |
| GATGATAGAACTTGAGGGTC+TGG | 0.368699 | 1_1:-70559241 | Msa0040400:CDS |
| ATCCACAGTCGGGAATCATT+TGG | 0.376499 | 1_1:+70558358 | None:intergenic |
| TATAATTGGATAAACAGATT+AGG | 0.376980 | 1_1:-70557562 | Msa0040400:three_prime_UTR |
| AAGTAATGAAGCGCGTATAA+AGG | 0.384843 | 1_1:+70558403 | None:intergenic |
| CCTCATCGAGCTTGCGAAGC+TGG | 0.400023 | 1_1:+70558308 | None:intergenic |
| ACAATGACAACGCCGATTGC+AGG | 0.406835 | 1_1:-70561497 | Msa0040400:CDS |
| GCAAAGCTGCATTCAGAGTT+GGG | 0.408786 | 1_1:-70558220 | Msa0040400:CDS |
| TGTGATTATCGTGCTTTGTA+TGG | 0.409421 | 1_1:-70558457 | Msa0040400:CDS |
| ATGCAGGGCGGCGGAGCAAT+TGG | 0.413245 | 1_1:-70561621 | Msa0040400:intron |
| TCCACAGTCGGGAATCATTT+GGG | 0.420700 | 1_1:+70558359 | None:intergenic |
| ACCATATAAGTACAAACAAA+AGG | 0.420898 | 1_1:+70559137 | None:intergenic |
| GAGGATGGAATCTGAAGAGA+GGG | 0.426699 | 1_1:-70558155 | Msa0040400:CDS |
| TTCATTCCCATACTTTGTGC+TGG | 0.431667 | 1_1:-70557762 | Msa0040400:three_prime_UTR |
| TGATGCGGTGAATCAGGAAT+TGG | 0.435489 | 1_1:-70559211 | Msa0040400:CDS |
| AATATCAACTGAAGTGCATA+AGG | 0.439777 | 1_1:+70559011 | None:intergenic |
| GTCTCTATTCCGCTTCCAAA+TGG | 0.440463 | 1_1:-70561742 | Msa0040400:intron |
| ACTTCATCCTCTTCCATAAC+CGG | 0.445613 | 1_1:+70561455 | None:intergenic |
| TAAATAGCTACCCTTGGAAC+TGG | 0.448123 | 1_1:-70559056 | Msa0040400:CDS |
| TGCAAAGCTGCATTCAGAGT+TGG | 0.452965 | 1_1:-70558221 | Msa0040400:CDS |
| GTCTTAATGTCAGTAGTCAT+TGG | 0.455741 | 1_1:-70558981 | Msa0040400:CDS |
| ACCCTTGGAACTGGAATGCC+TGG | 0.456175 | 1_1:-70559047 | Msa0040400:CDS |
| AGGAATTGGTTTCTTTAGAG+AGG | 0.470455 | 1_1:-70559197 | Msa0040400:CDS |
| AGGGCATCAAACTGTGATGA+TGG | 0.471291 | 1_1:-70558268 | Msa0040400:CDS |
| TTGTGCTGGAGCAGAACTAA+TGG | 0.471529 | 1_1:-70557748 | Msa0040400:three_prime_UTR |
| GGGCTTTAGCAATTTGAGCT+TGG | 0.481121 | 1_1:+70558851 | None:intergenic |
| AGCAAAGCCTCAATCATGTT+AGG | 0.482273 | 1_1:+70558127 | None:intergenic |
| TGCTACTCCGGTTATGGAAG+AGG | 0.488185 | 1_1:-70561462 | Msa0040400:CDS |
| TTGTCTACACTCCGCAAGAA+TGG | 0.490832 | 1_1:-70559171 | Msa0040400:CDS |
| CAGAAAGGATTTAGAGAGGA+TGG | 0.495031 | 1_1:-70558170 | Msa0040400:CDS |
| CCAATTATAGAATAGAAGAA+AGG | 0.496948 | 1_1:+70557576 | None:intergenic |
| CTGCTGTGAATGCCTATCGT+CGG | 0.496961 | 1_1:-70558498 | Msa0040400:CDS |
| ACACGTCTTCTCGATTATAC+TGG | 0.497476 | 1_1:-70558046 | Msa0040400:CDS |
| AGAGGATGGAATCTGAAGAG+AGG | 0.500780 | 1_1:-70558156 | Msa0040400:CDS |
| TCCATGTCTTCCACTCTGTA+AGG | 0.501402 | 1_1:+70558766 | None:intergenic |
| TGCTGTGAATGCCTATCGTC+GGG | 0.506475 | 1_1:-70558497 | Msa0040400:CDS |
| CTCCAATGTGCTTTATGCTA+AGG | 0.506539 | 1_1:-70558737 | Msa0040400:CDS |
| AAATTCTTTCAAACTGTACT+GGG | 0.511198 | 1_1:+70558831 | None:intergenic |
| GAAGAGATGATAGAACTTGA+GGG | 0.512391 | 1_1:-70559246 | Msa0040400:CDS |
| GGAAGAGATGATAGAACTTG+AGG | 0.513786 | 1_1:-70559247 | Msa0040400:CDS |
| TGTCAGTAGTCATTGGATGA+AGG | 0.516391 | 1_1:-70558974 | Msa0040400:CDS |
| ATGATAGAACTTGAGGGTCT+GGG | 0.520445 | 1_1:-70559240 | Msa0040400:CDS |
| TGGACTAGGACAAGCTTATG+AGG | 0.520816 | 1_1:-70558437 | Msa0040400:CDS |
| GGGCATCAAACTGTGATGAT+GGG | 0.526275 | 1_1:-70558267 | Msa0040400:CDS |
| TAAGGATTGCAGCTCAGTCC+AGG | 0.528177 | 1_1:+70559029 | None:intergenic |
| TTCGAAGGCGTGAATTTCGA+TGG | 0.532573 | 1_1:+70561578 | None:intergenic |
| TAAGGGATTAGACAGCATAA+AGG | 0.534939 | 1_1:-70557516 | None:intergenic |
| AGCCATTGCTATCCACAGTC+GGG | 0.535467 | 1_1:+70558348 | None:intergenic |
| TTTGGCGCGTACAGTTCTTG+TGG | 0.535552 | 1_1:-70559085 | Msa0040400:CDS |
| CGATAGGCATTCACAGCAGC+GGG | 0.537165 | 1_1:+70558502 | None:intergenic |
| CCATATAAGTACAAACAAAA+GGG | 0.545143 | 1_1:+70559138 | None:intergenic |
| GTCCAGGCATTCCAGTTCCA+AGG | 0.545231 | 1_1:+70559045 | None:intergenic |
| GGAAAGTGCTCAACATCCGC+TGG | 0.547287 | 1_1:+70557845 | None:intergenic |
| GGAATTGGTTTCTTTAGAGA+GGG | 0.550127 | 1_1:-70559196 | Msa0040400:CDS |
| TATCGTGCTTTGTATGGACT+AGG | 0.552484 | 1_1:-70558451 | Msa0040400:CDS |
| GATCTATTGTTCCATTCTTG+CGG | 0.552490 | 1_1:+70559160 | None:intergenic |
| TGAAATATACCATTTGGAAG+CGG | 0.554816 | 1_1:+70561733 | None:intergenic |
| TGTTTCGTATATTGCTACTC+CGG | 0.555633 | 1_1:-70561474 | Msa0040400:CDS |
| AATCTGTAAATAGCTACCCT+TGG | 0.556259 | 1_1:-70559062 | Msa0040400:CDS |
| GGCAGGAGAAAAGCGAAAAG+AGG | 0.563435 | 1_1:-70559268 | Msa0040400:CDS |
| GCAGAAGCAGATGAGTTCAA+AGG | 0.564871 | 1_1:-70561816 | Msa0040400:exon |
| ATCAGTCATGAATACTCTAT+GGG | 0.566494 | 1_1:+70558687 | None:intergenic |
| ATATACGAAACACCTGCAAT+CGG | 0.567580 | 1_1:+70561485 | None:intergenic |
| ACTCTGAATGCAGCTTTGCA+AGG | 0.569872 | 1_1:+70558224 | None:intergenic |
| GTCTACTAGTTAGTGCAGCA+TGG | 0.570197 | 1_1:+70557670 | None:intergenic |
| CGCTGAAACCTCGTATTCGA+AGG | 0.578774 | 1_1:+70561563 | None:intergenic |
| GGAATTATTACAGTTTAAAG+GGG | 0.578878 | 1_1:-70558633 | Msa0040400:CDS |
| GGTCTTATACTGAAACAGAA+AGG | 0.579233 | 1_1:-70559117 | Msa0040400:CDS |
| TATTTCAACAGCCCGACGAT+AGG | 0.582252 | 1_1:+70558486 | None:intergenic |
| AGAGTTGGGACGCACTGAAG+AGG | 0.583415 | 1_1:-70558206 | Msa0040400:CDS |
| GAGCCATTGCTATCCACAGT+CGG | 0.589081 | 1_1:+70558347 | None:intergenic |
| TCAAAATATGAATATTTACT+CGG | 0.590894 | 1_1:-70558898 | Msa0040400:CDS |
| TCCTTACAGAGTGGAAGACA+TGG | 0.592201 | 1_1:-70558767 | Msa0040400:CDS |
| TTCCTTAGCATAAAGCACAT+TGG | 0.592234 | 1_1:+70558735 | None:intergenic |
| TCTGCTCCAGCACAAAGTAT+GGG | 0.592889 | 1_1:+70557756 | None:intergenic |
| GAGAAGAACTGAAGAAGCAG+AGG | 0.594801 | 1_1:-70558077 | Msa0040400:CDS |
| GAAGAGGATGAAGTTGTTGA+CGG | 0.594806 | 1_1:-70561446 | Msa0040400:CDS |
| TCATTGTAATCTCATGAGTA+CGG | 0.594829 | 1_1:+70561513 | None:intergenic |
| AGGCAATAAAGTGTTACAGA+AGG | 0.600848 | 1_1:-70558288 | Msa0040400:CDS |
| AGGGCGGCGGAGCAATTGGT+AGG | 0.602481 | 1_1:-70561617 | Msa0040400:CDS |
| TTGATGAAAATGCAGGGCGG+CGG | 0.604789 | 1_1:-70561630 | Msa0040400:intron |
| GGCAATAAAGTGTTACAGAA+GGG | 0.606652 | 1_1:-70558287 | Msa0040400:CDS |
| GGAAGGACCTAACATGATTG+AGG | 0.608692 | 1_1:-70558134 | Msa0040400:CDS |
| TCCAGGCATTCCAGTTCCAA+GGG | 0.610042 | 1_1:+70559046 | None:intergenic |
| GGCATCAAACTGTGATGATG+GGG | 0.611034 | 1_1:-70558266 | Msa0040400:CDS |
| AAGTGCTCAACATCCGCTGG+AGG | 0.612692 | 1_1:+70557848 | None:intergenic |
| ACTACAGAAAGGATTTAGAG+AGG | 0.616904 | 1_1:-70558174 | Msa0040400:CDS |
| ACAATCTAGTTTCCCTCCAG+CGG | 0.619234 | 1_1:-70557861 | Msa0040400:CDS |
| TTCCCGACTGTGGATAGCAA+TGG | 0.623157 | 1_1:-70558350 | Msa0040400:CDS |
| TCATGAATACTCTATGGGCA+AGG | 0.627413 | 1_1:+70558692 | None:intergenic |
| GAGCAGCTCTCTTATACTCA+CGG | 0.629368 | 1_1:+70561387 | None:intergenic |
| AGTGCTCAACATCCGCTGGA+GGG | 0.630408 | 1_1:+70557849 | None:intergenic |
| TACAAAGCACGATAATCACA+CGG | 0.635868 | 1_1:+70558460 | None:intergenic |
| CTATATTTGAAGAACTGCTG+AGG | 0.641049 | 1_1:-70558795 | Msa0040400:CDS |
| AATTCACGCCTTCGAATACG+AGG | 0.641925 | 1_1:-70561571 | Msa0040400:CDS |
| GTGGAAGTTCAAGTATTCGT+CGG | 0.649300 | 1_1:-70561541 | Msa0040400:CDS |
| CCAGCTTCGCAAGCTCGATG+AGG | 0.649439 | 1_1:-70558308 | Msa0040400:CDS |
| ATGGAATCTGAAGAGAGGGA+AGG | 0.651788 | 1_1:-70558151 | Msa0040400:CDS |
| GCTGGAGGGAAACTAGATTG+TGG | 0.669682 | 1_1:+70557863 | None:intergenic |
| TTCATCAAAAGACATTATGG+AGG | 0.673231 | 1_1:+70557824 | None:intergenic |
| ACGATAGGCATTCACAGCAG+CGG | 0.679646 | 1_1:+70558501 | None:intergenic |
| GAGGATTGATCCTTACAGAG+TGG | 0.688847 | 1_1:-70558776 | Msa0040400:CDS |
| ACCCAAATGATTCCCGACTG+TGG | 0.691891 | 1_1:-70558360 | Msa0040400:CDS |
| ACAAAGCACGATAATCACAC+GGG | 0.717331 | 1_1:+70558461 | None:intergenic |
| GGGTCTGGGTAAAAGTGATG+CGG | 0.758419 | 1_1:-70559226 | Msa0040400:CDS |
| TCGAATACGAGGTTTCAGCG+TGG | 0.759283 | 1_1:-70561560 | Msa0040400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAATTTTCTGTTTATAT+GGG | - | chr1_1:70558317-70558336 | Msa0040400:CDS | 15.0% |
| !! | TACTAATAAACTATAATTAC+TGG | - | chr1_1:70558627-70558646 | Msa0040400:CDS | 15.0% |
| !!! | TCAGATTTAATTTTAAAAGA+TGG | + | chr1_1:70559123-70559142 | None:intergenic | 15.0% |
| !!! | TATTAGAAATACCAATTTTA+AGG | + | chr1_1:70559255-70559274 | None:intergenic | 15.0% |
| !!! | CTTTTAAACAAAATGTTAAT+AGG | + | chr1_1:70559285-70559304 | None:intergenic | 15.0% |
| !!! | CTATTAACATTTTGTTTAAA+AGG | - | chr1_1:70559283-70559302 | Msa0040400:intron | 15.0% |
| !! | TTTCAAAAATAACTAAAAAG+CGG | + | chr1_1:70559556-70559575 | None:intergenic | 15.0% |
| !! | TCAAAATATGAATATTTACT+CGG | - | chr1_1:70560435-70560454 | Msa0040400:intron | 15.0% |
| !! | ACTTTGATTATTAAATGATT+TGG | + | chr1_1:70561397-70561416 | None:intergenic | 15.0% |
| !!! | TACATTTTTACAAAATCAAA+CGG | + | chr1_1:70561799-70561818 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGTAAAAATGTA+AGG | - | chr1_1:70561799-70561818 | Msa0040400:CDS | 15.0% |
| !!! | TTGATTTTGTAAAAATGTAA+GGG | - | chr1_1:70561800-70561819 | Msa0040400:CDS | 15.0% |
| !! | AGGAATAGATATTTAGATTA+GGG | + | chr1_1:70557638-70557657 | None:intergenic | 20.0% |
| !! | AAGGAATAGATATTTAGATT+AGG | + | chr1_1:70557639-70557658 | None:intergenic | 20.0% |
| !!! | GAAATTATTTTTACCAACAT+TGG | - | chr1_1:70558072-70558091 | Msa0040400:CDS | 20.0% |
| !!! | TTTTATAATGTCAAATGCAT+TGG | - | chr1_1:70558247-70558266 | Msa0040400:CDS | 20.0% |
| !!! | GTTTGAATTTTCTGTTTATA+TGG | - | chr1_1:70558316-70558335 | Msa0040400:CDS | 20.0% |
| !! | ATTAACACAAACTTTAGTAA+CGG | - | chr1_1:70558384-70558403 | Msa0040400:CDS | 20.0% |
| !! | TCAAATCAAATAAAAGAGAA+TGG | + | chr1_1:70558929-70558948 | None:intergenic | 20.0% |
| !!! | TCTTTTATTTGATTTGAGTT+GGG | - | chr1_1:70558932-70558951 | Msa0040400:CDS | 20.0% |
| !!! | TACTTTCCAAGTTTTATTTA+CGG | + | chr1_1:70559422-70559441 | None:intergenic | 20.0% |
| !!! | GAAAAAAATCTTTTCGAAAA+GGG | + | chr1_1:70559760-70559779 | None:intergenic | 20.0% |
| !!! | AGAAAAAAATCTTTTCGAAA+AGG | + | chr1_1:70559761-70559780 | None:intergenic | 20.0% |
| !! | TCTAAATGAAGATAATACAT+TGG | - | chr1_1:70559882-70559901 | Msa0040400:intron | 20.0% |
| !! | CTAAATGAAGATAATACATT+GGG | - | chr1_1:70559883-70559902 | Msa0040400:intron | 20.0% |
| !!! | ATAATTTTTGTCCAGTTTAA+GGG | + | chr1_1:70560760-70560779 | None:intergenic | 20.0% |
| !!! | GTTAAATATTTTTTACTCAC+AGG | + | chr1_1:70561314-70561333 | None:intergenic | 20.0% |
| !! | TATAATTGGATAAACAGATT+AGG | - | chr1_1:70561771-70561790 | Msa0040400:CDS | 20.0% |
| !! | ATAATTGGATAAACAGATTA+GGG | - | chr1_1:70561772-70561791 | Msa0040400:CDS | 20.0% |
| !! | GAAGTTTGAAATATACCATT+TGG | + | chr1_1:70557609-70557628 | None:intergenic | 25.0% |
| !!! | TATTTTTACCAACATTGGAT+TGG | - | chr1_1:70558077-70558096 | Msa0040400:CDS | 25.0% |
| !!! | ATTTGAATTTGATTTCTAGC+TGG | - | chr1_1:70558116-70558135 | Msa0040400:CDS | 25.0% |
| ! | TTAACTCCTTAAATAGATCT+CGG | - | chr1_1:70558169-70558188 | Msa0040400:CDS | 25.0% |
| ! | TACATTATACACGAAATTGT+TGG | - | chr1_1:70558214-70558233 | Msa0040400:CDS | 25.0% |
| ! | ACTTTGATGTAGTAGTATTA+TGG | - | chr1_1:70558290-70558309 | Msa0040400:CDS | 25.0% |
| !! | TGTGTTTACTTCAATTTTTG+TGG | - | chr1_1:70558444-70558463 | Msa0040400:CDS | 25.0% |
| !! | GTGTTTACTTCAATTTTTGT+GGG | - | chr1_1:70558445-70558464 | Msa0040400:CDS | 25.0% |
| !! | ATTTTGTTGAGTTCCATTTT+GGG | - | chr1_1:70558534-70558553 | Msa0040400:CDS | 25.0% |
| ! | AAACGTTACTCGATATATTT+AGG | - | chr1_1:70558587-70558606 | Msa0040400:CDS | 25.0% |
| ! | AAAGCATATGTTGTCAATAA+TGG | + | chr1_1:70558793-70558812 | None:intergenic | 25.0% |
| ! | AATTCCTATAATTGTTGAAG+TGG | - | chr1_1:70558842-70558861 | Msa0040400:CDS | 25.0% |
| ! | ATTCCTATAATTGTTGAAGT+GGG | - | chr1_1:70558843-70558862 | Msa0040400:CDS | 25.0% |
| !!! | CTCTTTTATTTGATTTGAGT+TGG | - | chr1_1:70558931-70558950 | Msa0040400:CDS | 25.0% |
| !!! | TATGACCTTCTTTAATTTGA+AGG | + | chr1_1:70559099-70559118 | None:intergenic | 25.0% |
| ! | GTAAATAAAACTTGGAAAGT+AGG | - | chr1_1:70559421-70559440 | Msa0040400:intron | 25.0% |
| !! | TATATTCAAGTTAAAGCATG+AGG | - | chr1_1:70559530-70559549 | Msa0040400:intron | 25.0% |
| ! | CCATATAAGTACAAACAAAA+GGG | + | chr1_1:70560198-70560217 | None:intergenic | 25.0% |
| ! | ACCATATAAGTACAAACAAA+AGG | + | chr1_1:70560199-70560218 | None:intergenic | 25.0% |
| ! | AAATTCTTTCAAACTGTACT+GGG | + | chr1_1:70560505-70560524 | None:intergenic | 25.0% |
| !! | CTGAATCTTGTTGTATTATT+GGG | - | chr1_1:70560679-70560698 | Msa0040400:intron | 25.0% |
| ! | TGGGAATTATTACAGTTTAA+AGG | - | chr1_1:70560698-70560717 | Msa0040400:intron | 25.0% |
| ! | GGGAATTATTACAGTTTAAA+GGG | - | chr1_1:70560699-70560718 | Msa0040400:intron | 25.0% |
| ! | GGAATTATTACAGTTTAAAG+GGG | - | chr1_1:70560700-70560719 | Msa0040400:intron | 25.0% |
| !! | GATAATTTTTGTCCAGTTTA+AGG | + | chr1_1:70560761-70560780 | None:intergenic | 25.0% |
| ! | CCAATTATAGAATAGAAGAA+AGG | + | chr1_1:70561760-70561779 | None:intergenic | 25.0% |
| ! | CCTTTCTTCTATTCTATAAT+TGG | - | chr1_1:70561757-70561776 | Msa0040400:CDS | 25.0% |
| TGAAATATACCATTTGGAAG+CGG | + | chr1_1:70557603-70557622 | None:intergenic | 30.0% | |
| ! | TTTCGTATTGATGAAAATGC+AGG | - | chr1_1:70557696-70557715 | Msa0040400:three_prime_UTR | 30.0% |
| ! | TTCGTATTGATGAAAATGCA+GGG | - | chr1_1:70557697-70557716 | Msa0040400:three_prime_UTR | 30.0% |
| TCATTGTAATCTCATGAGTA+CGG | + | chr1_1:70557823-70557842 | None:intergenic | 30.0% | |
| ! | TGACGGTGATTTTTATCTTT+TGG | - | chr1_1:70557904-70557923 | Msa0040400:CDS | 30.0% |
| TTGGAAAAACATATGTTGTG+AGG | - | chr1_1:70558144-70558163 | Msa0040400:CDS | 30.0% | |
| TGGAAAAACATATGTTGTGA+GGG | - | chr1_1:70558145-70558164 | Msa0040400:CDS | 30.0% | |
| TAACTCCTTAAATAGATCTC+GGG | - | chr1_1:70558170-70558189 | Msa0040400:CDS | 30.0% | |
| TGGAGTTCTTATGTTTATTG+TGG | - | chr1_1:70558267-70558286 | Msa0040400:CDS | 30.0% | |
| ! | GATTTTGTTGAGTTCCATTT+TGG | - | chr1_1:70558533-70558552 | Msa0040400:CDS | 30.0% |
| ! | TTTTGTTGAGTTCCATTTTG+GGG | - | chr1_1:70558535-70558554 | Msa0040400:CDS | 30.0% |
| TTCCTATAATTGTTGAAGTG+GGG | - | chr1_1:70558844-70558863 | Msa0040400:CDS | 30.0% | |
| TTAAATCTGATTAGTGCTGT+TGG | - | chr1_1:70559133-70559152 | Msa0040400:CDS | 30.0% | |
| !!! | CCAGAGTTTTAACTTTTACT+GGG | + | chr1_1:70559221-70559240 | None:intergenic | 30.0% |
| ATATTACACACACAACTTCA+TGG | + | chr1_1:70559320-70559339 | None:intergenic | 30.0% | |
| TCTTAAAAACATTCTGCTTC+AGG | + | chr1_1:70559493-70559512 | None:intergenic | 30.0% | |
| !! | GAAATTACTGAGTTTGCTAT+TGG | + | chr1_1:70559646-70559665 | None:intergenic | 30.0% |
| !!! | AGATTTTTTTCTGCCTCTTA+TGG | - | chr1_1:70559769-70559788 | Msa0040400:intron | 30.0% |
| TTGACAAAACTAACCATAAG+AGG | + | chr1_1:70559785-70559804 | None:intergenic | 30.0% | |
| AGAAAACGTGAGAAGTTAAA+TGG | + | chr1_1:70559853-70559872 | None:intergenic | 30.0% | |
| !!! | TTGAAAGAACCGAGTTTTTT+TGG | - | chr1_1:70559988-70560007 | Msa0040400:intron | 30.0% |
| !!! | TGAAAGAACCGAGTTTTTTT+GGG | - | chr1_1:70559989-70560008 | Msa0040400:intron | 30.0% |
| !! | CCCTTTTGTTTGTACTTATA+TGG | - | chr1_1:70560195-70560214 | Msa0040400:intron | 30.0% |
| ACAGAAAGGCAATGATAATT+TGG | - | chr1_1:70560230-70560249 | Msa0040400:intron | 30.0% | |
| AATATCAACTGAAGTGCATA+AGG | + | chr1_1:70560325-70560344 | None:intergenic | 30.0% | |
| !! | CATTATGCATCCTTAGTTTT+TGG | + | chr1_1:70560407-70560426 | None:intergenic | 30.0% |
| ! | GAATATTTACTCGGAACTTT+TGG | - | chr1_1:70560444-70560463 | Msa0040400:intron | 30.0% |
| CAAATTCTTTCAAACTGTAC+TGG | + | chr1_1:70560506-70560525 | None:intergenic | 30.0% | |
| ATCAGTCATGAATACTCTAT+GGG | + | chr1_1:70560649-70560668 | None:intergenic | 30.0% | |
| TATCAGTCATGAATACTCTA+TGG | + | chr1_1:70560650-70560669 | None:intergenic | 30.0% | |
| CCAATAATACAACAAGATTC+AGG | + | chr1_1:70560681-70560700 | None:intergenic | 30.0% | |
| ! | CCTGAATCTTGTTGTATTAT+TGG | - | chr1_1:70560678-70560697 | Msa0040400:intron | 30.0% |
| ACAAAAATTATCTCTCTGCT+TGG | - | chr1_1:70560769-70560788 | Msa0040400:intron | 30.0% | |
| ATAATCAAAGTCATGCTTTC+AGG | - | chr1_1:70561406-70561425 | Msa0040400:CDS | 30.0% | |
| ACTGCAAAAAGTTTACTTAG+AGG | - | chr1_1:70561437-70561456 | Msa0040400:CDS | 30.0% | |
| TTCATCAAAAGACATTATGG+AGG | + | chr1_1:70561512-70561531 | None:intergenic | 30.0% | |
| TGCTTCATCAAAAGACATTA+TGG | + | chr1_1:70561515-70561534 | None:intergenic | 30.0% | |
| ! | TTTTGTTCAAAGTAGTGATC+TGG | - | chr1_1:70561701-70561720 | Msa0040400:intron | 30.0% |
| AAATGAAACGTCGTCGTTTA+AGG | + | chr1_1:70557679-70557698 | None:intergenic | 35.0% | |
| ATATACGAAACACCTGCAAT+CGG | + | chr1_1:70557851-70557870 | None:intergenic | 35.0% | |
| TGTTTCGTATATTGCTACTC+CGG | - | chr1_1:70557859-70557878 | Msa0040400:CDS | 35.0% | |
| CATGTTCTTCGTGATCAAAT+TGG | - | chr1_1:70557968-70557987 | Msa0040400:intron | 35.0% | |
| AAGATCTTATGCTCTCTATC+TGG | - | chr1_1:70558009-70558028 | Msa0040400:intron | 35.0% | |
| ACAATGTACCAATCCAATGT+TGG | + | chr1_1:70558088-70558107 | None:intergenic | 35.0% | |
| !! | AACATTGGATTGGTACATTG+TGG | - | chr1_1:70558087-70558106 | Msa0040400:CDS | 35.0% |
| CTAATCCCGAGATCTATTTA+AGG | + | chr1_1:70558178-70558197 | None:intergenic | 35.0% | |
| ! | TTTTGTGGGAAAGTCTGTTT+TGG | - | chr1_1:70558459-70558478 | Msa0040400:CDS | 35.0% |
| ! | TTTGTGGGAAAGTCTGTTTT+GGG | - | chr1_1:70558460-70558479 | Msa0040400:CDS | 35.0% |
| ! | TTTGTTGAGTTCCATTTTGG+GGG | - | chr1_1:70558536-70558555 | Msa0040400:CDS | 35.0% |
| AACCCCACTTCAACAATTAT+AGG | + | chr1_1:70558849-70558868 | None:intergenic | 35.0% | |
| ACATCTTAGACTTGACATGA+GGG | + | chr1_1:70559016-70559035 | None:intergenic | 35.0% | |
| TGCTGCCTTCAAATTAAAGA+AGG | - | chr1_1:70559091-70559110 | Msa0040400:CDS | 35.0% | |
| CCCAGTAAAAGTTAAAACTC+TGG | - | chr1_1:70559218-70559237 | Msa0040400:CDS | 35.0% | |
| !!! | GCCAGAGTTTTAACTTTTAC+TGG | + | chr1_1:70559222-70559241 | None:intergenic | 35.0% |
| GTAAAAGTTAAAACTCTGGC+TGG | - | chr1_1:70559222-70559241 | Msa0040400:CDS | 35.0% | |
| CGTCTTCCGTAAATAAAACT+TGG | - | chr1_1:70559413-70559432 | Msa0040400:intron | 35.0% | |
| GACATGACTAATAGCATAAG+AGG | + | chr1_1:70559822-70559841 | None:intergenic | 35.0% | |
| CTAATAGCACAAACAACTCA+TGG | - | chr1_1:70559918-70559937 | Msa0040400:intron | 35.0% | |
| !!! | GAAAGAACCGAGTTTTTTTG+GGG | - | chr1_1:70559990-70560009 | Msa0040400:intron | 35.0% |
| TCCAAAACCCCAAAAAAACT+CGG | + | chr1_1:70560000-70560019 | None:intergenic | 35.0% | |
| GAAGAGATGATAGAACTTGA+GGG | - | chr1_1:70560087-70560106 | Msa0040400:intron | 35.0% | |
| ! | AGGAATTGGTTTCTTTAGAG+AGG | - | chr1_1:70560136-70560155 | Msa0040400:intron | 35.0% |
| ! | GGAATTGGTTTCTTTAGAGA+GGG | - | chr1_1:70560137-70560156 | Msa0040400:intron | 35.0% |
| GATCTATTGTTCCATTCTTG+CGG | + | chr1_1:70560176-70560195 | None:intergenic | 35.0% | |
| ! | GGTCTTATACTGAAACAGAA+AGG | - | chr1_1:70560216-70560235 | Msa0040400:intron | 35.0% |
| AATCTGTAAATAGCTACCCT+TGG | - | chr1_1:70560271-70560290 | Msa0040400:intron | 35.0% | |
| GTCTTAATGTCAGTAGTCAT+TGG | - | chr1_1:70560352-70560371 | Msa0040400:intron | 35.0% | |
| CTATATTTGAAGAACTGCTG+AGG | - | chr1_1:70560538-70560557 | Msa0040400:intron | 35.0% | |
| TTCCTTAGCATAAAGCACAT+TGG | + | chr1_1:70560601-70560620 | None:intergenic | 35.0% | |
| ! | TATGCTAAGGAATGCTTTTC+TGG | - | chr1_1:70560609-70560628 | Msa0040400:intron | 35.0% |
| !! | TTTTAAGAGAGCCCTTAAAC+TGG | - | chr1_1:70560746-70560765 | Msa0040400:intron | 35.0% |
| TACAAAGCACGATAATCACA+CGG | + | chr1_1:70560876-70560895 | None:intergenic | 35.0% | |
| TGTGATTATCGTGCTTTGTA+TGG | - | chr1_1:70560876-70560895 | Msa0040400:intron | 35.0% | |
| AAGTAATGAAGCGCGTATAA+AGG | + | chr1_1:70560933-70560952 | None:intergenic | 35.0% | |
| ! | AGGCAATAAAGTGTTACAGA+AGG | - | chr1_1:70561045-70561064 | Msa0040400:intron | 35.0% |
| ! | GGCAATAAAGTGTTACAGAA+GGG | - | chr1_1:70561046-70561065 | Msa0040400:intron | 35.0% |
| ACTACAGAAAGGATTTAGAG+AGG | - | chr1_1:70561159-70561178 | Msa0040400:intron | 35.0% | |
| ! | AATGTCTTTTGATGAAGCAC+TGG | - | chr1_1:70561516-70561535 | Msa0040400:CDS | 35.0% |
| ! | TGTGCTGCAATTTTCAACTT+TGG | - | chr1_1:70561542-70561561 | Msa0040400:CDS | 35.0% |
| GGAATAGGGAAAATGAGAGA+AGG | + | chr1_1:70557658-70557677 | None:intergenic | 40.0% | |
| ACGTCGTCGTTTAAGGAATA+GGG | + | chr1_1:70557672-70557691 | None:intergenic | 40.0% | |
| AACGTCGTCGTTTAAGGAAT+AGG | + | chr1_1:70557673-70557692 | None:intergenic | 40.0% | |
| ! | GTATTGATGAAAATGCAGGG+CGG | - | chr1_1:70557700-70557719 | Msa0040400:three_prime_UTR | 40.0% |
| GTGGAAGTTCAAGTATTCGT+CGG | - | chr1_1:70557792-70557811 | Msa0040400:three_prime_UTR | 40.0% | |
| GTATATTGCTACTCCGGTTA+TGG | - | chr1_1:70557865-70557884 | Msa0040400:CDS | 40.0% | |
| ACTTCATCCTCTTCCATAAC+CGG | + | chr1_1:70557881-70557900 | None:intergenic | 40.0% | |
| GAAGAGGATGAAGTTGTTGA+CGG | - | chr1_1:70557887-70557906 | Msa0040400:CDS | 40.0% | |
| !! | TGGATTGGTACATTGTGGTT+AGG | - | chr1_1:70558092-70558111 | Msa0040400:CDS | 40.0% |
| !! | TGATTTCTAGCTGGTTCGTT+TGG | - | chr1_1:70558125-70558144 | Msa0040400:CDS | 40.0% |
| ! | GGTGTGTATGTTGTGTTGAT+GGG | - | chr1_1:70558338-70558357 | Msa0040400:CDS | 40.0% |
| ! | TTGTTGAGTTCCATTTTGGG+GGG | - | chr1_1:70558537-70558556 | Msa0040400:CDS | 40.0% |
| AATCGCAAAAAGCTCAACTC+TGG | - | chr1_1:70558695-70558714 | Msa0040400:CDS | 40.0% | |
| ATCGCAAAAAGCTCAACTCT+GGG | - | chr1_1:70558696-70558715 | Msa0040400:CDS | 40.0% | |
| ACTGAGCATGTAGCAACATT+AGG | - | chr1_1:70558878-70558897 | Msa0040400:CDS | 40.0% | |
| ACATTAGGCCAGAACATAGA+AGG | - | chr1_1:70558893-70558912 | Msa0040400:CDS | 40.0% | |
| ATAGACTGCCTTCTATGTTC+TGG | + | chr1_1:70558904-70558923 | None:intergenic | 40.0% | |
| !! | ATTTGATTTGAGTTGGGTGC+AGG | - | chr1_1:70558938-70558957 | Msa0040400:CDS | 40.0% |
| !! | TTTGATTTGAGTTGGGTGCA+GGG | - | chr1_1:70558939-70558958 | Msa0040400:CDS | 40.0% |
| TACAATGAACAAAGCACACC+AGG | - | chr1_1:70558963-70558982 | Msa0040400:CDS | 40.0% | |
| ACTGACATGTCATCTCTTCA+TGG | - | chr1_1:70558988-70559007 | Msa0040400:CDS | 40.0% | |
| CACATCTTAGACTTGACATG+AGG | + | chr1_1:70559017-70559036 | None:intergenic | 40.0% | |
| ! | AGTGCTGTTGGAAAGTAAGT+TGG | - | chr1_1:70559145-70559164 | Msa0040400:CDS | 40.0% |
| AAAACTTGGAAAGTAGGCAC+AGG | - | chr1_1:70559427-70559446 | Msa0040400:intron | 40.0% | |
| ! | CTGTTACACAAACTGACTTC+AGG | - | chr1_1:70559700-70559719 | Msa0040400:intron | 40.0% |
| !!! | ACCGAGTTTTTTTGGGGTTT+TGG | - | chr1_1:70559996-70560015 | Msa0040400:intron | 40.0% |
| GGAAGAGATGATAGAACTTG+AGG | - | chr1_1:70560086-70560105 | Msa0040400:intron | 40.0% | |
| ATGATAGAACTTGAGGGTCT+GGG | - | chr1_1:70560093-70560112 | Msa0040400:intron | 40.0% | |
| TAAAAGTGATGCGGTGAATC+AGG | - | chr1_1:70560116-70560135 | Msa0040400:intron | 40.0% | |
| TAAATAGCTACCCTTGGAAC+TGG | - | chr1_1:70560277-70560296 | Msa0040400:intron | 40.0% | |
| TGTCAGTAGTCATTGGATGA+AGG | - | chr1_1:70560359-70560378 | Msa0040400:intron | 40.0% | |
| !!! | CCTTAGTTTTTGGTAGAGAC+TGG | + | chr1_1:70560397-70560416 | None:intergenic | 40.0% |
| CCAGTCTCTACCAAAAACTA+AGG | - | chr1_1:70560394-70560413 | Msa0040400:intron | 40.0% | |
| CTCCAATGTGCTTTATGCTA+AGG | - | chr1_1:70560596-70560615 | Msa0040400:intron | 40.0% | |
| TCATGAATACTCTATGGGCA+AGG | + | chr1_1:70560644-70560663 | None:intergenic | 40.0% | |
| ACAAAGCACGATAATCACAC+GGG | + | chr1_1:70560875-70560894 | None:intergenic | 40.0% | |
| TATCGTGCTTTGTATGGACT+AGG | - | chr1_1:70560882-70560901 | Msa0040400:intron | 40.0% | |
| ! | GGCAGCATTTTACTACAGAA+AGG | - | chr1_1:70561148-70561167 | Msa0040400:intron | 40.0% |
| CAGAAAGGATTTAGAGAGGA+TGG | - | chr1_1:70561163-70561182 | Msa0040400:intron | 40.0% | |
| AGCAAAGCCTCAATCATGTT+AGG | + | chr1_1:70561209-70561228 | None:intergenic | 40.0% | |
| ACACGTCTTCTCGATTATAC+TGG | - | chr1_1:70561287-70561306 | Msa0040400:intron | 40.0% | |
| AAAGTCATGCTTTCAGGAGA+GGG | - | chr1_1:70561412-70561431 | Msa0040400:CDS | 40.0% | |
| TTCATTCCCATACTTTGTGC+TGG | - | chr1_1:70561571-70561590 | Msa0040400:CDS | 40.0% | |
| GCAGAAGCAGATGAGTTCAA+AGG | - | chr1_1:70557517-70557536 | Msa0040400:three_prime_UTR | 45.0% | |
| GTCTCTATTCCGCTTCCAAA+TGG | - | chr1_1:70557591-70557610 | Msa0040400:three_prime_UTR | 45.0% | |
| ! | TTCGAAGGCGTGAATTTCGA+TGG | + | chr1_1:70557758-70557777 | None:intergenic | 45.0% |
| AATTCACGCCTTCGAATACG+AGG | - | chr1_1:70557762-70557781 | Msa0040400:three_prime_UTR | 45.0% | |
| GAGCAGCTCTCTTATACTCA+CGG | + | chr1_1:70557949-70557968 | None:intergenic | 45.0% | |
| GGGTGTGTATGTTGTGTTGA+TGG | - | chr1_1:70558337-70558356 | Msa0040400:CDS | 45.0% | |
| !! | TGGGAAAGTCTGTTTTGGGT+TGG | - | chr1_1:70558464-70558483 | Msa0040400:CDS | 45.0% |
| !!! | GGGAAAGTCTGTTTTGGGTT+GGG | - | chr1_1:70558465-70558484 | Msa0040400:CDS | 45.0% |
| !!! | GGAAAGTCTGTTTTGGGTTG+GGG | - | chr1_1:70558466-70558485 | Msa0040400:CDS | 45.0% |
| !!! | GAAAGTCTGTTTTGGGTTGG+GGG | - | chr1_1:70558467-70558486 | Msa0040400:CDS | 45.0% |
| ! | TTAAAACTCTGGCTGGCTGT+TGG | - | chr1_1:70559229-70559248 | Msa0040400:CDS | 45.0% |
| !! | CTGGCTGTTGGCCTTAAAAT+TGG | - | chr1_1:70559241-70559260 | Msa0040400:CDS | 45.0% |
| GCATAAGAGGCAGAAGACTA+GGG | + | chr1_1:70559809-70559828 | None:intergenic | 45.0% | |
| AGCATAAGAGGCAGAAGACT+AGG | + | chr1_1:70559810-70559829 | None:intergenic | 45.0% | |
| GATGATAGAACTTGAGGGTC+TGG | - | chr1_1:70560092-70560111 | Msa0040400:intron | 45.0% | |
| TGATGCGGTGAATCAGGAAT+TGG | - | chr1_1:70560122-70560141 | Msa0040400:intron | 45.0% | |
| TTGTCTACACTCCGCAAGAA+TGG | - | chr1_1:70560162-70560181 | Msa0040400:intron | 45.0% | |
| ! | GGGCTTTAGCAATTTGAGCT+TGG | + | chr1_1:70560485-70560504 | None:intergenic | 45.0% |
| GAGGATTGATCCTTACAGAG+TGG | - | chr1_1:70560557-70560576 | Msa0040400:intron | 45.0% | |
| TCCTTACAGAGTGGAAGACA+TGG | - | chr1_1:70560566-70560585 | Msa0040400:intron | 45.0% | |
| TCCATGTCTTCCACTCTGTA+AGG | + | chr1_1:70560570-70560589 | None:intergenic | 45.0% | |
| TCTCTCTGCTTGGACACTTA+TGG | - | chr1_1:70560779-70560798 | Msa0040400:intron | 45.0% | |
| CTCTCTGCTTGGACACTTAT+GGG | - | chr1_1:70560780-70560799 | Msa0040400:intron | 45.0% | |
| TATTTCAACAGCCCGACGAT+AGG | + | chr1_1:70560850-70560869 | None:intergenic | 45.0% | |
| ! | TGGACTAGGACAAGCTTATG+AGG | - | chr1_1:70560896-70560915 | Msa0040400:intron | 45.0% |
| TCCACAGTCGGGAATCATTT+GGG | + | chr1_1:70560977-70560996 | None:intergenic | 45.0% | |
| ATCCACAGTCGGGAATCATT+TGG | + | chr1_1:70560978-70560997 | None:intergenic | 45.0% | |
| ! | AGGGCATCAAACTGTGATGA+TGG | - | chr1_1:70561065-70561084 | Msa0040400:intron | 45.0% |
| GGGCATCAAACTGTGATGAT+GGG | - | chr1_1:70561066-70561085 | Msa0040400:intron | 45.0% | |
| ! | GGCATCAAACTGTGATGATG+GGG | - | chr1_1:70561067-70561086 | Msa0040400:intron | 45.0% |
| ACTCTGAATGCAGCTTTGCA+AGG | + | chr1_1:70561112-70561131 | None:intergenic | 45.0% | |
| TGCAAAGCTGCATTCAGAGT+TGG | - | chr1_1:70561112-70561131 | Msa0040400:intron | 45.0% | |
| GCAAAGCTGCATTCAGAGTT+GGG | - | chr1_1:70561113-70561132 | Msa0040400:intron | 45.0% | |
| AGAGGATGGAATCTGAAGAG+AGG | - | chr1_1:70561177-70561196 | Msa0040400:intron | 45.0% | |
| GAGGATGGAATCTGAAGAGA+GGG | - | chr1_1:70561178-70561197 | Msa0040400:intron | 45.0% | |
| ATGGAATCTGAAGAGAGGGA+AGG | - | chr1_1:70561182-70561201 | Msa0040400:intron | 45.0% | |
| GGAAGGACCTAACATGATTG+AGG | - | chr1_1:70561199-70561218 | Msa0040400:intron | 45.0% | |
| GAGAAGAACTGAAGAAGCAG+AGG | - | chr1_1:70561256-70561275 | Msa0040400:intron | 45.0% | |
| CAAAGTCATGCTTTCAGGAG+AGG | - | chr1_1:70561411-70561430 | Msa0040400:CDS | 45.0% | |
| ! | ACAATCTAGTTTCCCTCCAG+CGG | - | chr1_1:70561472-70561491 | Msa0040400:CDS | 45.0% |
| TCTGCTCCAGCACAAAGTAT+GGG | + | chr1_1:70561580-70561599 | None:intergenic | 45.0% | |
| TTCTGCTCCAGCACAAAGTA+TGG | + | chr1_1:70561581-70561600 | None:intergenic | 45.0% | |
| TTGTGCTGGAGCAGAACTAA+TGG | - | chr1_1:70561585-70561604 | Msa0040400:CDS | 45.0% | |
| GTCTACTAGTTAGTGCAGCA+TGG | + | chr1_1:70561666-70561685 | None:intergenic | 45.0% | |
| TTGATGAAAATGCAGGGCGG+CGG | - | chr1_1:70557703-70557722 | Msa0040400:three_prime_UTR | 50.0% | |
| CGCTGAAACCTCGTATTCGA+AGG | + | chr1_1:70557773-70557792 | None:intergenic | 50.0% | |
| TCGAATACGAGGTTTCAGCG+TGG | - | chr1_1:70557773-70557792 | Msa0040400:three_prime_UTR | 50.0% | |
| ! | ACAATGACAACGCCGATTGC+AGG | - | chr1_1:70557836-70557855 | Msa0040400:exon | 50.0% |
| TGCTACTCCGGTTATGGAAG+AGG | - | chr1_1:70557871-70557890 | Msa0040400:CDS | 50.0% | |
| TCATCTCAGTCCCCCCAAAA+TGG | + | chr1_1:70558550-70558569 | None:intergenic | 50.0% | |
| !! | AGCTCAACTCTGGGATGCTA+TGG | - | chr1_1:70558705-70558724 | Msa0040400:CDS | 50.0% |
| ACGACGAACTTCCGTGTTAG+CGG | - | chr1_1:70558757-70558776 | Msa0040400:CDS | 50.0% | |
| GAGATGACATGTCAGTCACC+TGG | + | chr1_1:70558984-70559003 | None:intergenic | 50.0% | |
| !! | TTCGCTTTTCTCCTGCCTGT+AGG | + | chr1_1:70560062-70560081 | None:intergenic | 50.0% |
| GGCAGGAGAAAAGCGAAAAG+AGG | - | chr1_1:70560065-70560084 | Msa0040400:intron | 50.0% | |
| GGGTCTGGGTAAAAGTGATG+CGG | - | chr1_1:70560107-70560126 | Msa0040400:intron | 50.0% | |
| TTTGGCGCGTACAGTTCTTG+TGG | - | chr1_1:70560248-70560267 | Msa0040400:intron | 50.0% | |
| TCCAGGCATTCCAGTTCCAA+GGG | + | chr1_1:70560290-70560309 | None:intergenic | 50.0% | |
| TAAGGATTGCAGCTCAGTCC+AGG | + | chr1_1:70560307-70560326 | None:intergenic | 50.0% | |
| ACGATAGGCATTCACAGCAG+CGG | + | chr1_1:70560835-70560854 | None:intergenic | 50.0% | |
| CTGCTGTGAATGCCTATCGT+CGG | - | chr1_1:70560835-70560854 | Msa0040400:intron | 50.0% | |
| TGCTGTGAATGCCTATCGTC+GGG | - | chr1_1:70560836-70560855 | Msa0040400:intron | 50.0% | |
| ACCCAAATGATTCCCGACTG+TGG | - | chr1_1:70560973-70560992 | Msa0040400:intron | 50.0% | |
| TTCCCGACTGTGGATAGCAA+TGG | - | chr1_1:70560983-70561002 | Msa0040400:intron | 50.0% | |
| AGCCATTGCTATCCACAGTC+GGG | + | chr1_1:70560988-70561007 | None:intergenic | 50.0% | |
| GAGCCATTGCTATCCACAGT+CGG | + | chr1_1:70560989-70561008 | None:intergenic | 50.0% | |
| GCTGGAGGGAAACTAGATTG+TGG | + | chr1_1:70561473-70561492 | None:intergenic | 50.0% | |
| GAAGTTCGTCGTGTCACGGT+GGG | + | chr1_1:70558749-70558768 | None:intergenic | 55.0% | |
| CACGGAAGTTCGTCGTGTCA+CGG | + | chr1_1:70558753-70558772 | None:intergenic | 55.0% | |
| ! | TCCGTGTTAGCGGTGCTAAC+TGG | - | chr1_1:70558767-70558786 | Msa0040400:CDS | 55.0% |
| GCCAGTTAGCACCGCTAACA+CGG | + | chr1_1:70558771-70558790 | None:intergenic | 55.0% | |
| ! | CCTGTAGGAAGTGCAGAGCA+TGG | + | chr1_1:70560047-70560066 | None:intergenic | 55.0% |
| CCATGCTCTGCACTTCCTAC+AGG | - | chr1_1:70560044-70560063 | Msa0040400:intron | 55.0% | |
| ACCCTTGGAACTGGAATGCC+TGG | - | chr1_1:70560286-70560305 | Msa0040400:intron | 55.0% | |
| GTCCAGGCATTCCAGTTCCA+AGG | + | chr1_1:70560291-70560310 | None:intergenic | 55.0% | |
| CGATAGGCATTCACAGCAGC+GGG | + | chr1_1:70560834-70560853 | None:intergenic | 55.0% | |
| AGAGTTGGGACGCACTGAAG+AGG | - | chr1_1:70561127-70561146 | Msa0040400:intron | 55.0% | |
| AGTGCTCAACATCCGCTGGA+GGG | + | chr1_1:70561487-70561506 | None:intergenic | 55.0% | |
| AAGTGCTCAACATCCGCTGG+AGG | + | chr1_1:70561488-70561507 | None:intergenic | 55.0% | |
| !! | GGAAAGTGCTCAACATCCGC+TGG | + | chr1_1:70561491-70561510 | None:intergenic | 55.0% |
| CTGGGATGCTATGGCGTGTG+TGG | - | chr1_1:70558714-70558733 | Msa0040400:CDS | 60.0% | |
| GGATGCTATGGCGTGTGTGG+AGG | - | chr1_1:70558717-70558736 | Msa0040400:CDS | 60.0% | |
| GGAAGTTCGTCGTGTCACGG+TGG | + | chr1_1:70558750-70558769 | None:intergenic | 60.0% | |
| GCTCTGCACTTCCTACAGGC+AGG | - | chr1_1:70560048-70560067 | Msa0040400:intron | 60.0% | |
| CCTCATCGAGCTTGCGAAGC+TGG | + | chr1_1:70561028-70561047 | None:intergenic | 60.0% | |
| CCAGCTTCGCAAGCTCGATG+AGG | - | chr1_1:70561025-70561044 | Msa0040400:intron | 60.0% | |
| ATGCAGGGCGGCGGAGCAAT+TGG | - | chr1_1:70557712-70557731 | Msa0040400:three_prime_UTR | 65.0% | |
| AGGGCGGCGGAGCAATTGGT+AGG | - | chr1_1:70557716-70557735 | Msa0040400:three_prime_UTR | 65.0% | |
| GGGGGGACTGAGATGACTGC+AGG | - | chr1_1:70558554-70558573 | Msa0040400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70557517 | 70561838 | 70557517 | ID=Msa0040400;Name=Msa0040400 |
| chr1_1 | mRNA | 70557517 | 70561838 | 70557517 | ID=Msa0040400-mRNA-1;Parent=Msa0040400;Name=Msa0040400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=10|1|1|1|1|1|4|321|578 |
| chr1_1 | exon | 70557517 | 70557927 | 70557517 | ID=Msa0040400-mRNA-1:exon:23245;Parent=Msa0040400-mRNA-1 |
| chr1_1 | exon | 70558042 | 70559289 | 70558042 | ID=Msa0040400-mRNA-1:exon:23244;Parent=Msa0040400-mRNA-1 |
| chr1_1 | exon | 70561325 | 70561637 | 70561325 | ID=Msa0040400-mRNA-1:exon:23243;Parent=Msa0040400-mRNA-1 |
| chr1_1 | exon | 70561743 | 70561838 | 70561743 | ID=Msa0040400-mRNA-1:exon:23242;Parent=Msa0040400-mRNA-1 |
| chr1_1 | five_prime_UTR | 70561829 | 70561838 | 70561829 | ID=Msa0040400-mRNA-1:five_prime_utr;Parent=Msa0040400-mRNA-1 |
| chr1_1 | CDS | 70561743 | 70561828 | 70561743 | ID=Msa0040400-mRNA-1:cds;Parent=Msa0040400-mRNA-1 |
| chr1_1 | CDS | 70561325 | 70561637 | 70561325 | ID=Msa0040400-mRNA-1:cds;Parent=Msa0040400-mRNA-1 |
| chr1_1 | CDS | 70558042 | 70559289 | 70558042 | ID=Msa0040400-mRNA-1:cds;Parent=Msa0040400-mRNA-1 |
| chr1_1 | CDS | 70557838 | 70557927 | 70557838 | ID=Msa0040400-mRNA-1:cds;Parent=Msa0040400-mRNA-1 |
| chr1_1 | three_prime_UTR | 70557517 | 70557837 | 70557517 | ID=Msa0040400-mRNA-1:three_prime_utr;Parent=Msa0040400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
