Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135190 | A0A072VR42 | 89.532 | 363 | 31 | 3 | 1 | 359 | 1 | 360 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088170 | Msa0135190 | 0.849640 | 2.840790e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135190 | MtrunA17_Chr1g0205271 | 89.532 | 363 | 31 | 3 | 1 | 359 | 1 | 360 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135190 | AT1G05440.1 | 42.183 | 339 | 168 | 8 | 15 | 336 | 46 | 373 | 3.27e-83 | 258 |
Find 73 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGTATTAGTAGATTT+TGG | 0.178212 | 1_3:-66808087 | Msa0135190:three_prime_UTR |
| CTTCATGGATACAACCAAAA+TGG | 0.183129 | 1_3:-66808343 | Msa0135190:CDS |
| ATTGAAGGTGATGATGGTTT+TGG | 0.185757 | 1_3:-66809209 | Msa0135190:CDS |
| GCAAGATGAAGAAAGATTTC+TGG | 0.232024 | 1_3:-66808190 | Msa0135190:CDS |
| CAATTGAGGAAGTAACAATT+TGG | 0.253903 | 1_3:-66808730 | Msa0135190:CDS |
| ATGGAAGAATCAATGGAAAT+TGG | 0.275671 | 1_3:+66809385 | None:intergenic |
| ACTACTGAGGCACCCCATTT+TGG | 0.276024 | 1_3:+66808329 | None:intergenic |
| AATTTGGTTAAGGCACTATT+AGG | 0.333805 | 1_3:+66809448 | None:intergenic |
| TTCATGGATACAACCAAAAT+GGG | 0.357670 | 1_3:-66808342 | Msa0135190:CDS |
| AATACTATTGACTTCAAGTT+GGG | 0.360170 | 1_3:+66808099 | None:intergenic |
| AAGAAAATCATCAATACAAT+TGG | 0.363470 | 1_3:-66808151 | Msa0135190:CDS |
| TACTCAAGAACCCAAGTATT+AGG | 0.366691 | 1_3:+66808296 | None:intergenic |
| AATTGAGGAAGTAACAATTT+GGG | 0.369740 | 1_3:-66808729 | Msa0135190:CDS |
| GCAAAATTCACAGTTGCAAT+TGG | 0.380706 | 1_3:+66809504 | None:intergenic |
| GAAAGGAAAAGGGTGAAAAT+AGG | 0.385492 | 1_3:-66809255 | Msa0135190:CDS |
| ATGTTATGATTAACAATGTT+GGG | 0.391798 | 1_3:+66809412 | None:intergenic |
| TAGAATTGAAAGAAAGGAAA+AGG | 0.396592 | 1_3:-66809266 | Msa0135190:CDS |
| CATAAAGTTCAAGATTTGAA+TGG | 0.408458 | 1_3:-66809085 | Msa0135190:CDS |
| TGAAGATGAGAATTTGGTTA+AGG | 0.411953 | 1_3:+66809438 | None:intergenic |
| CACTATTAGGCATGAGATCA+AGG | 0.415994 | 1_3:+66809461 | None:intergenic |
| TGCAATTAGATCCTAATACT+TGG | 0.426848 | 1_3:-66808307 | Msa0135190:CDS |
| CTCTGGTTTAGGTTTATTGA+AGG | 0.427099 | 1_3:-66809224 | Msa0135190:CDS |
| ATGGTCTATTATTGAATTCA+AGG | 0.427828 | 1_3:-66808772 | Msa0135190:CDS |
| TTCGGAAGGCGAATACTTCA+TGG | 0.434950 | 1_3:-66808358 | Msa0135190:CDS |
| CGTACACTAACTATCTTGTC+AGG | 0.447830 | 1_3:-66808659 | Msa0135190:CDS |
| ACAGCTGGAATGATCACTAC+TGG | 0.448508 | 1_3:-66808692 | Msa0135190:CDS |
| AATGTTATGATTAACAATGT+TGG | 0.449553 | 1_3:+66809411 | None:intergenic |
| TAATACTATTGACTTCAAGT+TGG | 0.454774 | 1_3:+66808098 | None:intergenic |
| AGGTTTATTGAAGGTGATGA+TGG | 0.457190 | 1_3:-66809215 | Msa0135190:CDS |
| GAATTTGGAGGGATTGTGAA+TGG | 0.459066 | 1_3:-66809040 | Msa0135190:CDS |
| GTCAGAGGATATAGTGAAAA+GGG | 0.462251 | 1_3:-66809122 | Msa0135190:CDS |
| AGCTCAATTGTTGATGGTAA+AGG | 0.463697 | 1_3:-66808266 | Msa0135190:CDS |
| CTTGCAACCAGGGTAGTAGT+AGG | 0.468543 | 1_3:+66809534 | None:intergenic |
| GACAAGTTAGCTATATGATT+CGG | 0.471315 | 1_3:-66808376 | Msa0135190:CDS |
| GAAAGATTTCTGGCAGTTTG+TGG | 0.472904 | 1_3:-66808180 | Msa0135190:CDS |
| GGAGAAAATGGAAGAATCAA+TGG | 0.473186 | 1_3:+66809378 | None:intergenic |
| TGTCAGAGGATATAGTGAAA+AGG | 0.479850 | 1_3:-66809123 | Msa0135190:CDS |
| ATATTGTTTAGTGTTTACTA+AGG | 0.485846 | 1_3:+66807973 | None:intergenic |
| TGGTTCACAACAACAAGCTA+TGG | 0.488760 | 1_3:-66808131 | Msa0135190:CDS |
| TGTTCATAGAATTGAAAGAA+AGG | 0.490935 | 1_3:-66809272 | Msa0135190:CDS |
| GCAATTAGATCCTAATACTT+GGG | 0.494411 | 1_3:-66808306 | Msa0135190:CDS |
| GTAGCTTTACTGATAAATCA+TGG | 0.496205 | 1_3:-66809003 | Msa0135190:CDS |
| TTTATCAAGGGTTGTTTCTG+TGG | 0.502417 | 1_3:-66809161 | Msa0135190:CDS |
| AGAATTGAAAGAAAGGAAAA+GGG | 0.503700 | 1_3:-66809265 | Msa0135190:CDS |
| CTTGGGTTCTTGAGTATCAA+AGG | 0.503835 | 1_3:-66808289 | Msa0135190:CDS |
| CAAAGGAGCTCAATTGTTGA+TGG | 0.507767 | 1_3:-66808272 | Msa0135190:CDS |
| ACTATATCCTCTGACAAAGA+AGG | 0.518859 | 1_3:+66809130 | None:intergenic |
| GTTGCTGTTTAATAGTGGAA+TGG | 0.518871 | 1_3:-66808401 | Msa0135190:intron |
| GGGTGGCCTCTACAAACAGC+TGG | 0.533908 | 1_3:-66808707 | Msa0135190:CDS |
| TTAGCACTTGACTTGATCAC+AGG | 0.540401 | 1_3:+66809307 | None:intergenic |
| ATTGTACAAATCAGCAATTG+AGG | 0.559267 | 1_3:-66808744 | Msa0135190:CDS |
| GGAGCTCCTCACAAGAAATG+AGG | 0.560121 | 1_3:+66808035 | None:intergenic |
| GAGGATATAGTGAAAAGGGT+TGG | 0.561715 | 1_3:-66809118 | Msa0135190:CDS |
| ACACCCGAAAAGAGTTATGA+TGG | 0.562321 | 1_3:-66809355 | Msa0135190:CDS |
| AACAGCTCCTACTACTACCC+TGG | 0.571026 | 1_3:-66809541 | Msa0135190:CDS |
| GACTTGATCACAGGAGTAGA+CGG | 0.579789 | 1_3:+66809316 | None:intergenic |
| CAGCTGGAATGATCACTACT+GGG | 0.580660 | 1_3:-66808691 | Msa0135190:CDS |
| ATCATTCCAGCTGTTTGTAG+AGG | 0.580850 | 1_3:+66808701 | None:intergenic |
| TATAGTGAAAAGGGTTGGTG+AGG | 0.592518 | 1_3:-66809113 | Msa0135190:CDS |
| GAGCTCCTCACAAGAAATGA+GGG | 0.597098 | 1_3:+66808036 | None:intergenic |
| CAAAACCCTCATTTCTTGTG+AGG | 0.597573 | 1_3:-66808041 | Msa0135190:three_prime_UTR |
| ATTGAGGAAGTAACAATTTG+GGG | 0.602488 | 1_3:-66808728 | Msa0135190:CDS |
| GGTTCACAACAACAAGCTAT+GGG | 0.612900 | 1_3:-66808130 | Msa0135190:CDS |
| ACTATTAGGCATGAGATCAA+GGG | 0.627357 | 1_3:+66809462 | None:intergenic |
| ATACTATTGACTTCAAGTTG+GGG | 0.631468 | 1_3:+66808100 | None:intergenic |
| TAAATCATGGAAAATCAACC+AGG | 0.642725 | 1_3:-66808990 | Msa0135190:intron |
| AGGATCTAATTGCACTACTG+AGG | 0.655302 | 1_3:+66808316 | None:intergenic |
| GCTGTTTAATAGTGGAATGG+TGG | 0.659502 | 1_3:-66808398 | Msa0135190:intron |
| AGTTAGCTATATGATTCGGA+AGG | 0.662338 | 1_3:-66808372 | Msa0135190:CDS |
| TTGAGGAAGTAACAATTTGG+GGG | 0.680273 | 1_3:-66808727 | Msa0135190:CDS |
| TTGATGAAGGTGGAATCTCA+TGG | 0.695968 | 1_3:+66809603 | None:intergenic |
| CTTGTCAGGAAGAGTTACCG+AGG | 0.701822 | 1_3:-66808645 | Msa0135190:intron |
| TCATGGATACAACCAAAATG+GGG | 0.715904 | 1_3:-66808341 | Msa0135190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGCATTTTTTATTTCT+TGG | - | chr1_3:66808671-66808690 | Msa0135190:CDS | 15.0% |
| !!! | TTTTGCATTTTTTATTTCTT+GGG | - | chr1_3:66808672-66808691 | Msa0135190:CDS | 15.0% |
| !!! | ATTTTGCATTTTTTATTTCT+TGG | - | chr1_3:66808671-66808690 | Msa0135190:CDS | 15.0% |
| !!! | TTTTGCATTTTTTATTTCTT+GGG | - | chr1_3:66808672-66808691 | Msa0135190:CDS | 15.0% |
| !! | ATGTTATGATTAACAATGTT+GGG | + | chr1_3:66808167-66808186 | None:intergenic | 20.0% |
| !! | AATGTTATGATTAACAATGT+TGG | + | chr1_3:66808168-66808187 | None:intergenic | 20.0% |
| !! | CATCAACTAAAATTGTATAT+AGG | - | chr1_3:66808781-66808800 | Msa0135190:intron | 20.0% |
| !! | AACTAAAATTGTATATAGGA+TGG | - | chr1_3:66808785-66808804 | Msa0135190:intron | 20.0% |
| !!! | ATACATTGAATGTAATGTTT+TGG | - | chr1_3:66809034-66809053 | Msa0135190:CDS | 20.0% |
| !! | AAGAAAATCATCAATACAAT+TGG | - | chr1_3:66809425-66809444 | Msa0135190:CDS | 20.0% |
| !!! | TCAATAGTATTAGTAGATTT+TGG | - | chr1_3:66809489-66809508 | Msa0135190:CDS | 20.0% |
| !! | ATATTGTTTAGTGTTTACTA+AGG | + | chr1_3:66809606-66809625 | None:intergenic | 20.0% |
| !! | ATGTTATGATTAACAATGTT+GGG | + | chr1_3:66808167-66808186 | None:intergenic | 20.0% |
| !! | AATGTTATGATTAACAATGT+TGG | + | chr1_3:66808168-66808187 | None:intergenic | 20.0% |
| !! | CATCAACTAAAATTGTATAT+AGG | - | chr1_3:66808781-66808800 | Msa0135190:intron | 20.0% |
| !! | AACTAAAATTGTATATAGGA+TGG | - | chr1_3:66808785-66808804 | Msa0135190:intron | 20.0% |
| !!! | ATACATTGAATGTAATGTTT+TGG | - | chr1_3:66809034-66809053 | Msa0135190:CDS | 20.0% |
| !! | AAGAAAATCATCAATACAAT+TGG | - | chr1_3:66809425-66809444 | Msa0135190:CDS | 20.0% |
| !!! | TCAATAGTATTAGTAGATTT+TGG | - | chr1_3:66809489-66809508 | Msa0135190:CDS | 20.0% |
| !! | ATATTGTTTAGTGTTTACTA+AGG | + | chr1_3:66809606-66809625 | None:intergenic | 20.0% |
| !!! | TGTTAGATTTTGATTGATGA+AGG | + | chr1_3:66807989-66808008 | None:intergenic | 25.0% |
| ! | TGTTCATAGAATTGAAAGAA+AGG | - | chr1_3:66808304-66808323 | Msa0135190:CDS | 25.0% |
| ! | TAGAATTGAAAGAAAGGAAA+AGG | - | chr1_3:66808310-66808329 | Msa0135190:CDS | 25.0% |
| ! | AGAATTGAAAGAAAGGAAAA+GGG | - | chr1_3:66808311-66808330 | Msa0135190:CDS | 25.0% |
| ! | CATAAAGTTCAAGATTTGAA+TGG | - | chr1_3:66808491-66808510 | Msa0135190:intron | 25.0% |
| ! | TCTACAAACAATATAATACC+TGG | + | chr1_3:66808607-66808626 | None:intergenic | 25.0% |
| ! | ATGGTCTATTATTGAATTCA+AGG | - | chr1_3:66808804-66808823 | Msa0135190:intron | 25.0% |
| ! | AATTGAGGAAGTAACAATTT+GGG | - | chr1_3:66808847-66808866 | Msa0135190:intron | 25.0% |
| !! | CATAGAAAAGGAAAACATTT+TGG | + | chr1_3:66808965-66808984 | None:intergenic | 25.0% |
| !! | CAACATTGAATGTAATGTTT+TGG | + | chr1_3:66809136-66809155 | None:intergenic | 25.0% |
| !!! | TTTTCAAGTATAGGATTTCA+AGG | - | chr1_3:66809356-66809375 | Msa0135190:CDS | 25.0% |
| !!! | AATACTATTGACTTCAAGTT+GGG | + | chr1_3:66809480-66809499 | None:intergenic | 25.0% |
| !!! | TAATACTATTGACTTCAAGT+TGG | + | chr1_3:66809481-66809500 | None:intergenic | 25.0% |
| !!! | TCCAACTTTTTTACTTGTAA+AGG | - | chr1_3:66809561-66809580 | Msa0135190:CDS | 25.0% |
| ! | ACCTTTACAAGTAAAAAAGT+TGG | + | chr1_3:66809565-66809584 | None:intergenic | 25.0% |
| !!! | TGTTAGATTTTGATTGATGA+AGG | + | chr1_3:66807989-66808008 | None:intergenic | 25.0% |
| ! | TGTTCATAGAATTGAAAGAA+AGG | - | chr1_3:66808304-66808323 | Msa0135190:CDS | 25.0% |
| ! | TAGAATTGAAAGAAAGGAAA+AGG | - | chr1_3:66808310-66808329 | Msa0135190:CDS | 25.0% |
| ! | AGAATTGAAAGAAAGGAAAA+GGG | - | chr1_3:66808311-66808330 | Msa0135190:CDS | 25.0% |
| ! | CATAAAGTTCAAGATTTGAA+TGG | - | chr1_3:66808491-66808510 | Msa0135190:intron | 25.0% |
| ! | TCTACAAACAATATAATACC+TGG | + | chr1_3:66808607-66808626 | None:intergenic | 25.0% |
| ! | ATGGTCTATTATTGAATTCA+AGG | - | chr1_3:66808804-66808823 | Msa0135190:intron | 25.0% |
| ! | AATTGAGGAAGTAACAATTT+GGG | - | chr1_3:66808847-66808866 | Msa0135190:intron | 25.0% |
| !! | CATAGAAAAGGAAAACATTT+TGG | + | chr1_3:66808965-66808984 | None:intergenic | 25.0% |
| !! | CAACATTGAATGTAATGTTT+TGG | + | chr1_3:66809136-66809155 | None:intergenic | 25.0% |
| !!! | TTTTCAAGTATAGGATTTCA+AGG | - | chr1_3:66809356-66809375 | Msa0135190:CDS | 25.0% |
| !!! | AATACTATTGACTTCAAGTT+GGG | + | chr1_3:66809480-66809499 | None:intergenic | 25.0% |
| !!! | TAATACTATTGACTTCAAGT+TGG | + | chr1_3:66809481-66809500 | None:intergenic | 25.0% |
| !!! | TCCAACTTTTTTACTTGTAA+AGG | - | chr1_3:66809561-66809580 | Msa0135190:CDS | 25.0% |
| ! | ACCTTTACAAGTAAAAAAGT+TGG | + | chr1_3:66809565-66809584 | None:intergenic | 25.0% |
| !!! | TAGATTTTGATTGATGAAGG+TGG | + | chr1_3:66807986-66808005 | None:intergenic | 30.0% |
| ! | AATTTGGTTAAGGCACTATT+AGG | + | chr1_3:66808131-66808150 | None:intergenic | 30.0% |
| TGAAGATGAGAATTTGGTTA+AGG | + | chr1_3:66808141-66808160 | None:intergenic | 30.0% | |
| ATGGAAGAATCAATGGAAAT+TGG | + | chr1_3:66808194-66808213 | None:intergenic | 30.0% | |
| ! | TACACCATCATAACTCTTTT+CGG | + | chr1_3:66808228-66808247 | None:intergenic | 30.0% |
| !! | GAAAATAGGTGTTTTTACTC+TGG | - | chr1_3:66808335-66808354 | Msa0135190:CDS | 30.0% |
| !!! | TTGCTGATGTTGTTTTATCA+AGG | - | chr1_3:66808402-66808421 | Msa0135190:intron | 30.0% |
| !!! | TGCTGATGTTGTTTTATCAA+GGG | - | chr1_3:66808403-66808422 | Msa0135190:intron | 30.0% |
| ! | AAAGTTGAAGTTTTTGCAGA+AGG | - | chr1_3:66808514-66808533 | Msa0135190:intron | 30.0% |
| ! | AAGTTTTTGCAGAAGGAATT+TGG | - | chr1_3:66808521-66808540 | Msa0135190:intron | 30.0% |
| ! | GTAGCTTTACTGATAAATCA+TGG | - | chr1_3:66808573-66808592 | Msa0135190:intron | 30.0% |
| TAAATCATGGAAAATCAACC+AGG | - | chr1_3:66808586-66808605 | Msa0135190:intron | 30.0% | |
| ATTGTACAAATCAGCAATTG+AGG | - | chr1_3:66808832-66808851 | Msa0135190:intron | 30.0% | |
| CAATTGAGGAAGTAACAATT+TGG | - | chr1_3:66808846-66808865 | Msa0135190:intron | 30.0% | |
| ATTGAGGAAGTAACAATTTG+GGG | - | chr1_3:66808848-66808867 | Msa0135190:intron | 30.0% | |
| !! | ACATTTTGGAGAATTTACCT+CGG | + | chr1_3:66808951-66808970 | None:intergenic | 30.0% |
| AACGACAAATCACATAGAAA+AGG | + | chr1_3:66808977-66808996 | None:intergenic | 30.0% | |
| TTGATTGAAATCACATACAC+CGG | - | chr1_3:66808995-66809014 | Msa0135190:CDS | 30.0% | |
| !!! | GTTTTGTTGCTGTTTAATAG+TGG | - | chr1_3:66809170-66809189 | Msa0135190:CDS | 30.0% |
| GACAAGTTAGCTATATGATT+CGG | - | chr1_3:66809200-66809219 | Msa0135190:CDS | 30.0% | |
| TTCATGGATACAACCAAAAT+GGG | - | chr1_3:66809234-66809253 | Msa0135190:CDS | 30.0% | |
| TGCAATTAGATCCTAATACT+TGG | - | chr1_3:66809269-66809288 | Msa0135190:CDS | 30.0% | |
| GCAATTAGATCCTAATACTT+GGG | - | chr1_3:66809270-66809289 | Msa0135190:CDS | 30.0% | |
| !! | ATACTATTGACTTCAAGTTG+GGG | + | chr1_3:66809479-66809498 | None:intergenic | 30.0% |
| !!! | TAGATTTTGATTGATGAAGG+TGG | + | chr1_3:66807986-66808005 | None:intergenic | 30.0% |
| ! | AATTTGGTTAAGGCACTATT+AGG | + | chr1_3:66808131-66808150 | None:intergenic | 30.0% |
| TGAAGATGAGAATTTGGTTA+AGG | + | chr1_3:66808141-66808160 | None:intergenic | 30.0% | |
| ATGGAAGAATCAATGGAAAT+TGG | + | chr1_3:66808194-66808213 | None:intergenic | 30.0% | |
| ! | TACACCATCATAACTCTTTT+CGG | + | chr1_3:66808228-66808247 | None:intergenic | 30.0% |
| !! | GAAAATAGGTGTTTTTACTC+TGG | - | chr1_3:66808335-66808354 | Msa0135190:CDS | 30.0% |
| !!! | TTGCTGATGTTGTTTTATCA+AGG | - | chr1_3:66808402-66808421 | Msa0135190:intron | 30.0% |
| !!! | TGCTGATGTTGTTTTATCAA+GGG | - | chr1_3:66808403-66808422 | Msa0135190:intron | 30.0% |
| ! | AAAGTTGAAGTTTTTGCAGA+AGG | - | chr1_3:66808514-66808533 | Msa0135190:intron | 30.0% |
| ! | AAGTTTTTGCAGAAGGAATT+TGG | - | chr1_3:66808521-66808540 | Msa0135190:intron | 30.0% |
| ! | GTAGCTTTACTGATAAATCA+TGG | - | chr1_3:66808573-66808592 | Msa0135190:intron | 30.0% |
| TAAATCATGGAAAATCAACC+AGG | - | chr1_3:66808586-66808605 | Msa0135190:intron | 30.0% | |
| ATTGTACAAATCAGCAATTG+AGG | - | chr1_3:66808832-66808851 | Msa0135190:intron | 30.0% | |
| CAATTGAGGAAGTAACAATT+TGG | - | chr1_3:66808846-66808865 | Msa0135190:intron | 30.0% | |
| ATTGAGGAAGTAACAATTTG+GGG | - | chr1_3:66808848-66808867 | Msa0135190:intron | 30.0% | |
| !! | ACATTTTGGAGAATTTACCT+CGG | + | chr1_3:66808951-66808970 | None:intergenic | 30.0% |
| AACGACAAATCACATAGAAA+AGG | + | chr1_3:66808977-66808996 | None:intergenic | 30.0% | |
| TTGATTGAAATCACATACAC+CGG | - | chr1_3:66808995-66809014 | Msa0135190:CDS | 30.0% | |
| !!! | GTTTTGTTGCTGTTTAATAG+TGG | - | chr1_3:66809170-66809189 | Msa0135190:CDS | 30.0% |
| GACAAGTTAGCTATATGATT+CGG | - | chr1_3:66809200-66809219 | Msa0135190:CDS | 30.0% | |
| TTCATGGATACAACCAAAAT+GGG | - | chr1_3:66809234-66809253 | Msa0135190:CDS | 30.0% | |
| TGCAATTAGATCCTAATACT+TGG | - | chr1_3:66809269-66809288 | Msa0135190:CDS | 30.0% | |
| GCAATTAGATCCTAATACTT+GGG | - | chr1_3:66809270-66809289 | Msa0135190:CDS | 30.0% | |
| !! | ATACTATTGACTTCAAGTTG+GGG | + | chr1_3:66809479-66809498 | None:intergenic | 30.0% |
| GCAAAATTCACAGTTGCAAT+TGG | + | chr1_3:66808075-66808094 | None:intergenic | 35.0% | |
| ACTATTAGGCATGAGATCAA+GGG | + | chr1_3:66808117-66808136 | None:intergenic | 35.0% | |
| !!! | GGGTTTTGAAGATGAGAATT+TGG | + | chr1_3:66808147-66808166 | None:intergenic | 35.0% |
| GGAGAAAATGGAAGAATCAA+TGG | + | chr1_3:66808201-66808220 | None:intergenic | 35.0% | |
| ! | ACACCATCATAACTCTTTTC+GGG | + | chr1_3:66808227-66808246 | None:intergenic | 35.0% |
| GAAAGGAAAAGGGTGAAAAT+AGG | - | chr1_3:66808321-66808340 | Msa0135190:CDS | 35.0% | |
| !! | AGGTGTTTTTACTCTGGTTT+AGG | - | chr1_3:66808341-66808360 | Msa0135190:CDS | 35.0% |
| ! | CTCTGGTTTAGGTTTATTGA+AGG | - | chr1_3:66808352-66808371 | Msa0135190:CDS | 35.0% |
| AGGTTTATTGAAGGTGATGA+TGG | - | chr1_3:66808361-66808380 | Msa0135190:CDS | 35.0% | |
| !!! | ATTGAAGGTGATGATGGTTT+TGG | - | chr1_3:66808367-66808386 | Msa0135190:CDS | 35.0% |
| !!! | TTGAAGGTGATGATGGTTTT+GGG | - | chr1_3:66808368-66808387 | Msa0135190:CDS | 35.0% |
| !! | TTTATCAAGGGTTGTTTCTG+TGG | - | chr1_3:66808415-66808434 | Msa0135190:intron | 35.0% |
| ! | TTTTCAACCTTCTTTGTCAG+AGG | - | chr1_3:66808439-66808458 | Msa0135190:intron | 35.0% |
| ACTATATCCTCTGACAAAGA+AGG | + | chr1_3:66808449-66808468 | None:intergenic | 35.0% | |
| TGTCAGAGGATATAGTGAAA+AGG | - | chr1_3:66808453-66808472 | Msa0135190:intron | 35.0% | |
| GTCAGAGGATATAGTGAAAA+GGG | - | chr1_3:66808454-66808473 | Msa0135190:intron | 35.0% | |
| ! | TTTTTGCAGAAGGAATTTGG+AGG | - | chr1_3:66808524-66808543 | Msa0135190:intron | 35.0% |
| ! | TTTTGCAGAAGGAATTTGGA+GGG | - | chr1_3:66808525-66808544 | Msa0135190:intron | 35.0% |
| TTGAGGAAGTAACAATTTGG+GGG | - | chr1_3:66808849-66808868 | Msa0135190:intron | 35.0% | |
| TCACGAACACTTTAGATTGA+AGG | + | chr1_3:66809100-66809119 | None:intergenic | 35.0% | |
| !! | GTTGCTGTTTAATAGTGGAA+TGG | - | chr1_3:66809175-66809194 | Msa0135190:CDS | 35.0% |
| ! | AGTTAGCTATATGATTCGGA+AGG | - | chr1_3:66809204-66809223 | Msa0135190:CDS | 35.0% |
| CTTCATGGATACAACCAAAA+TGG | - | chr1_3:66809233-66809252 | Msa0135190:CDS | 35.0% | |
| TCATGGATACAACCAAAATG+GGG | - | chr1_3:66809235-66809254 | Msa0135190:CDS | 35.0% | |
| TACTCAAGAACCCAAGTATT+AGG | + | chr1_3:66809283-66809302 | None:intergenic | 35.0% | |
| !! | AGCTCAATTGTTGATGGTAA+AGG | - | chr1_3:66809310-66809329 | Msa0135190:CDS | 35.0% |
| !!! | CGTTGGAGATTTTCAAGTAT+AGG | - | chr1_3:66809347-66809366 | Msa0135190:CDS | 35.0% |
| GCAAGATGAAGAAAGATTTC+TGG | - | chr1_3:66809386-66809405 | Msa0135190:CDS | 35.0% | |
| ATCTCATGGTTGAATTCTTG+AGG | + | chr1_3:66807962-66807981 | None:intergenic | 35.0% | |
| GCAAAATTCACAGTTGCAAT+TGG | + | chr1_3:66808075-66808094 | None:intergenic | 35.0% | |
| ACTATTAGGCATGAGATCAA+GGG | + | chr1_3:66808117-66808136 | None:intergenic | 35.0% | |
| !!! | GGGTTTTGAAGATGAGAATT+TGG | + | chr1_3:66808147-66808166 | None:intergenic | 35.0% |
| GGAGAAAATGGAAGAATCAA+TGG | + | chr1_3:66808201-66808220 | None:intergenic | 35.0% | |
| ! | ACACCATCATAACTCTTTTC+GGG | + | chr1_3:66808227-66808246 | None:intergenic | 35.0% |
| GAAAGGAAAAGGGTGAAAAT+AGG | - | chr1_3:66808321-66808340 | Msa0135190:CDS | 35.0% | |
| !! | AGGTGTTTTTACTCTGGTTT+AGG | - | chr1_3:66808341-66808360 | Msa0135190:CDS | 35.0% |
| ! | CTCTGGTTTAGGTTTATTGA+AGG | - | chr1_3:66808352-66808371 | Msa0135190:CDS | 35.0% |
| AGGTTTATTGAAGGTGATGA+TGG | - | chr1_3:66808361-66808380 | Msa0135190:CDS | 35.0% | |
| !!! | ATTGAAGGTGATGATGGTTT+TGG | - | chr1_3:66808367-66808386 | Msa0135190:CDS | 35.0% |
| !!! | TTGAAGGTGATGATGGTTTT+GGG | - | chr1_3:66808368-66808387 | Msa0135190:CDS | 35.0% |
| !! | TTTATCAAGGGTTGTTTCTG+TGG | - | chr1_3:66808415-66808434 | Msa0135190:intron | 35.0% |
| ! | TTTTCAACCTTCTTTGTCAG+AGG | - | chr1_3:66808439-66808458 | Msa0135190:intron | 35.0% |
| ACTATATCCTCTGACAAAGA+AGG | + | chr1_3:66808449-66808468 | None:intergenic | 35.0% | |
| TGTCAGAGGATATAGTGAAA+AGG | - | chr1_3:66808453-66808472 | Msa0135190:intron | 35.0% | |
| GTCAGAGGATATAGTGAAAA+GGG | - | chr1_3:66808454-66808473 | Msa0135190:intron | 35.0% | |
| ! | TTTTTGCAGAAGGAATTTGG+AGG | - | chr1_3:66808524-66808543 | Msa0135190:intron | 35.0% |
| ! | TTTTGCAGAAGGAATTTGGA+GGG | - | chr1_3:66808525-66808544 | Msa0135190:intron | 35.0% |
| TTGAGGAAGTAACAATTTGG+GGG | - | chr1_3:66808849-66808868 | Msa0135190:intron | 35.0% | |
| TCACGAACACTTTAGATTGA+AGG | + | chr1_3:66809100-66809119 | None:intergenic | 35.0% | |
| !! | GTTGCTGTTTAATAGTGGAA+TGG | - | chr1_3:66809175-66809194 | Msa0135190:CDS | 35.0% |
| ! | AGTTAGCTATATGATTCGGA+AGG | - | chr1_3:66809204-66809223 | Msa0135190:CDS | 35.0% |
| CTTCATGGATACAACCAAAA+TGG | - | chr1_3:66809233-66809252 | Msa0135190:CDS | 35.0% | |
| TCATGGATACAACCAAAATG+GGG | - | chr1_3:66809235-66809254 | Msa0135190:CDS | 35.0% | |
| TACTCAAGAACCCAAGTATT+AGG | + | chr1_3:66809283-66809302 | None:intergenic | 35.0% | |
| !! | AGCTCAATTGTTGATGGTAA+AGG | - | chr1_3:66809310-66809329 | Msa0135190:CDS | 35.0% |
| !!! | CGTTGGAGATTTTCAAGTAT+AGG | - | chr1_3:66809347-66809366 | Msa0135190:CDS | 35.0% |
| GCAAGATGAAGAAAGATTTC+TGG | - | chr1_3:66809386-66809405 | Msa0135190:CDS | 35.0% | |
| TTGATGAAGGTGGAATCTCA+TGG | + | chr1_3:66807976-66807995 | None:intergenic | 40.0% | |
| CACTATTAGGCATGAGATCA+AGG | + | chr1_3:66808118-66808137 | None:intergenic | 40.0% | |
| !!! | ATCATAACTCTTTTCGGGTG+TGG | + | chr1_3:66808222-66808241 | None:intergenic | 40.0% |
| ACACCCGAAAAGAGTTATGA+TGG | - | chr1_3:66808221-66808240 | Msa0135190:CDS | 40.0% | |
| ! | TTAGCACTTGACTTGATCAC+AGG | + | chr1_3:66808272-66808291 | None:intergenic | 40.0% |
| !!! | TGAAGGTGATGATGGTTTTG+GGG | - | chr1_3:66808369-66808388 | Msa0135190:CDS | 40.0% |
| GAGGATATAGTGAAAAGGGT+TGG | - | chr1_3:66808458-66808477 | Msa0135190:intron | 40.0% | |
| !! | TATAGTGAAAAGGGTTGGTG+AGG | - | chr1_3:66808463-66808482 | Msa0135190:intron | 40.0% |
| GAATTTGGAGGGATTGTGAA+TGG | - | chr1_3:66808536-66808555 | Msa0135190:intron | 40.0% | |
| ATCATTCCAGCTGTTTGTAG+AGG | + | chr1_3:66808878-66808897 | None:intergenic | 40.0% | |
| CGTACACTAACTATCTTGTC+AGG | - | chr1_3:66808917-66808936 | Msa0135190:intron | 40.0% | |
| TATAGTGTCATGTCTAGTGC+CGG | + | chr1_3:66809017-66809036 | None:intergenic | 40.0% | |
| GTCTAACATTAGTCGCACAT+CGG | - | chr1_3:66809069-66809088 | Msa0135190:CDS | 40.0% | |
| ! | GCTGTTTAATAGTGGAATGG+TGG | - | chr1_3:66809178-66809197 | Msa0135190:CDS | 40.0% |
| AGGATCTAATTGCACTACTG+AGG | + | chr1_3:66809263-66809282 | None:intergenic | 40.0% | |
| CTTGGGTTCTTGAGTATCAA+AGG | - | chr1_3:66809287-66809306 | Msa0135190:CDS | 40.0% | |
| CAAAGGAGCTCAATTGTTGA+TGG | - | chr1_3:66809304-66809323 | Msa0135190:CDS | 40.0% | |
| ! | AGGATTGTTTTCTACAGCGT+TGG | - | chr1_3:66809330-66809349 | Msa0135190:CDS | 40.0% |
| !! | GAAAGATTTCTGGCAGTTTG+TGG | - | chr1_3:66809396-66809415 | Msa0135190:CDS | 40.0% |
| TGGTTCACAACAACAAGCTA+TGG | - | chr1_3:66809445-66809464 | Msa0135190:CDS | 40.0% | |
| GGTTCACAACAACAAGCTAT+GGG | - | chr1_3:66809446-66809465 | Msa0135190:CDS | 40.0% | |
| CAAAACCCTCATTTCTTGTG+AGG | - | chr1_3:66809535-66809554 | Msa0135190:CDS | 40.0% | |
| TTGATGAAGGTGGAATCTCA+TGG | + | chr1_3:66807976-66807995 | None:intergenic | 40.0% | |
| CACTATTAGGCATGAGATCA+AGG | + | chr1_3:66808118-66808137 | None:intergenic | 40.0% | |
| !!! | ATCATAACTCTTTTCGGGTG+TGG | + | chr1_3:66808222-66808241 | None:intergenic | 40.0% |
| ACACCCGAAAAGAGTTATGA+TGG | - | chr1_3:66808221-66808240 | Msa0135190:CDS | 40.0% | |
| ! | TTAGCACTTGACTTGATCAC+AGG | + | chr1_3:66808272-66808291 | None:intergenic | 40.0% |
| !!! | TGAAGGTGATGATGGTTTTG+GGG | - | chr1_3:66808369-66808388 | Msa0135190:CDS | 40.0% |
| GAGGATATAGTGAAAAGGGT+TGG | - | chr1_3:66808458-66808477 | Msa0135190:intron | 40.0% | |
| !! | TATAGTGAAAAGGGTTGGTG+AGG | - | chr1_3:66808463-66808482 | Msa0135190:intron | 40.0% |
| GAATTTGGAGGGATTGTGAA+TGG | - | chr1_3:66808536-66808555 | Msa0135190:intron | 40.0% | |
| ATCATTCCAGCTGTTTGTAG+AGG | + | chr1_3:66808878-66808897 | None:intergenic | 40.0% | |
| CGTACACTAACTATCTTGTC+AGG | - | chr1_3:66808917-66808936 | Msa0135190:intron | 40.0% | |
| TATAGTGTCATGTCTAGTGC+CGG | + | chr1_3:66809017-66809036 | None:intergenic | 40.0% | |
| GTCTAACATTAGTCGCACAT+CGG | - | chr1_3:66809069-66809088 | Msa0135190:CDS | 40.0% | |
| ! | GCTGTTTAATAGTGGAATGG+TGG | - | chr1_3:66809178-66809197 | Msa0135190:CDS | 40.0% |
| AGGATCTAATTGCACTACTG+AGG | + | chr1_3:66809263-66809282 | None:intergenic | 40.0% | |
| CTTGGGTTCTTGAGTATCAA+AGG | - | chr1_3:66809287-66809306 | Msa0135190:CDS | 40.0% | |
| CAAAGGAGCTCAATTGTTGA+TGG | - | chr1_3:66809304-66809323 | Msa0135190:CDS | 40.0% | |
| ! | AGGATTGTTTTCTACAGCGT+TGG | - | chr1_3:66809330-66809349 | Msa0135190:CDS | 40.0% |
| !! | GAAAGATTTCTGGCAGTTTG+TGG | - | chr1_3:66809396-66809415 | Msa0135190:CDS | 40.0% |
| TGGTTCACAACAACAAGCTA+TGG | - | chr1_3:66809445-66809464 | Msa0135190:CDS | 40.0% | |
| GGTTCACAACAACAAGCTAT+GGG | - | chr1_3:66809446-66809465 | Msa0135190:CDS | 40.0% | |
| CAAAACCCTCATTTCTTGTG+AGG | - | chr1_3:66809535-66809554 | Msa0135190:CDS | 40.0% | |
| ! | TGGCGTTTTTCTTGCAACCA+GGG | + | chr1_3:66808055-66808074 | None:intergenic | 45.0% |
| ! | TTGGCGTTTTTCTTGCAACC+AGG | + | chr1_3:66808056-66808075 | None:intergenic | 45.0% |
| !!! | CTTTTCGGGTGTGGAGAAAA+TGG | + | chr1_3:66808213-66808232 | None:intergenic | 45.0% |
| GACTTGATCACAGGAGTAGA+CGG | + | chr1_3:66808263-66808282 | None:intergenic | 45.0% | |
| !!! | GAAGGTGATGATGGTTTTGG+GGG | - | chr1_3:66808370-66808389 | Msa0135190:CDS | 45.0% |
| AGGAAGTAACAATTTGGGGG+TGG | - | chr1_3:66808852-66808871 | Msa0135190:intron | 45.0% | |
| ACAGCTGGAATGATCACTAC+TGG | - | chr1_3:66808884-66808903 | Msa0135190:intron | 45.0% | |
| CAGCTGGAATGATCACTACT+GGG | - | chr1_3:66808885-66808904 | Msa0135190:intron | 45.0% | |
| TTCGGAAGGCGAATACTTCA+TGG | - | chr1_3:66809218-66809237 | Msa0135190:CDS | 45.0% | |
| GAGCTCCTCACAAGAAATGA+GGG | + | chr1_3:66809543-66809562 | None:intergenic | 45.0% | |
| ! | TGGCGTTTTTCTTGCAACCA+GGG | + | chr1_3:66808055-66808074 | None:intergenic | 45.0% |
| ! | TTGGCGTTTTTCTTGCAACC+AGG | + | chr1_3:66808056-66808075 | None:intergenic | 45.0% |
| !!! | CTTTTCGGGTGTGGAGAAAA+TGG | + | chr1_3:66808213-66808232 | None:intergenic | 45.0% |
| GACTTGATCACAGGAGTAGA+CGG | + | chr1_3:66808263-66808282 | None:intergenic | 45.0% | |
| !!! | GAAGGTGATGATGGTTTTGG+GGG | - | chr1_3:66808370-66808389 | Msa0135190:CDS | 45.0% |
| AGGAAGTAACAATTTGGGGG+TGG | - | chr1_3:66808852-66808871 | Msa0135190:intron | 45.0% | |
| ACAGCTGGAATGATCACTAC+TGG | - | chr1_3:66808884-66808903 | Msa0135190:intron | 45.0% | |
| CAGCTGGAATGATCACTACT+GGG | - | chr1_3:66808885-66808904 | Msa0135190:intron | 45.0% | |
| TTCGGAAGGCGAATACTTCA+TGG | - | chr1_3:66809218-66809237 | Msa0135190:CDS | 45.0% | |
| GAGCTCCTCACAAGAAATGA+GGG | + | chr1_3:66809543-66809562 | None:intergenic | 45.0% | |
| AACAGCTCCTACTACTACCC+TGG | - | chr1_3:66808035-66808054 | Msa0135190:three_prime_UTR | 50.0% | |
| CTTGCAACCAGGGTAGTAGT+AGG | + | chr1_3:66808045-66808064 | None:intergenic | 50.0% | |
| CTTGTCAGGAAGAGTTACCG+AGG | - | chr1_3:66808931-66808950 | Msa0135190:intron | 50.0% | |
| !! | ACTACTGAGGCACCCCATTT+TGG | + | chr1_3:66809250-66809269 | None:intergenic | 50.0% |
| GGAGCTCCTCACAAGAAATG+AGG | + | chr1_3:66809544-66809563 | None:intergenic | 50.0% | |
| AACAGCTCCTACTACTACCC+TGG | - | chr1_3:66808035-66808054 | Msa0135190:three_prime_UTR | 50.0% | |
| CTTGCAACCAGGGTAGTAGT+AGG | + | chr1_3:66808045-66808064 | None:intergenic | 50.0% | |
| CTTGTCAGGAAGAGTTACCG+AGG | - | chr1_3:66808931-66808950 | Msa0135190:intron | 50.0% | |
| !! | ACTACTGAGGCACCCCATTT+TGG | + | chr1_3:66809250-66809269 | None:intergenic | 50.0% |
| GGAGCTCCTCACAAGAAATG+AGG | + | chr1_3:66809544-66809563 | None:intergenic | 50.0% | |
| GGGTGGCCTCTACAAACAGC+TGG | - | chr1_3:66808869-66808888 | Msa0135190:intron | 60.0% | |
| GGGTGGCCTCTACAAACAGC+TGG | - | chr1_3:66808869-66808888 | Msa0135190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66807962 | 66809636 | 66807962 | ID=Msa0135190;Name=Msa0135190 |
| chr1_3 | mRNA | 66807962 | 66809636 | 66807962 | ID=Msa0135190-mRNA-1;Parent=Msa0135190;Name=Msa0135190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=13|1|1|1|1|1|3|150|359 |
| chr1_3 | exon | 66807962 | 66808408 | 66807962 | ID=Msa0135190-mRNA-1:exon:22856;Parent=Msa0135190-mRNA-1 |
| chr1_3 | exon | 66808646 | 66808795 | 66808646 | ID=Msa0135190-mRNA-1:exon:22855;Parent=Msa0135190-mRNA-1 |
| chr1_3 | exon | 66808991 | 66809636 | 66808991 | ID=Msa0135190-mRNA-1:exon:22854;Parent=Msa0135190-mRNA-1 |
| chr1_3 | five_prime_UTR | 66809624 | 66809636 | 66809624 | ID=Msa0135190-mRNA-1:five_prime_utr;Parent=Msa0135190-mRNA-1 |
| chr1_3 | CDS | 66808991 | 66809623 | 66808991 | ID=Msa0135190-mRNA-1:cds;Parent=Msa0135190-mRNA-1 |
| chr1_3 | CDS | 66808646 | 66808795 | 66808646 | ID=Msa0135190-mRNA-1:cds;Parent=Msa0135190-mRNA-1 |
| chr1_3 | CDS | 66808112 | 66808408 | 66808112 | ID=Msa0135190-mRNA-1:cds;Parent=Msa0135190-mRNA-1 |
| chr1_3 | three_prime_UTR | 66807962 | 66808111 | 66807962 | ID=Msa0135190-mRNA-1:three_prime_utr;Parent=Msa0135190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
