Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088170 | XP_013469825.1 | 89.807 | 363 | 30 | 3 | 1 | 359 | 1 | 360 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088170 | A0A072VR42 | 89.807 | 363 | 30 | 3 | 1 | 359 | 1 | 360 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088170 | Msa0135190 | 0.849640 | 2.840790e-60 | -8.615850e-47 |
| Msa0088170 | Msa0179390 | 0.818896 | 1.542861e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088170 | MtrunA17_Chr1g0205271 | 89.807 | 363 | 30 | 3 | 1 | 359 | 1 | 360 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088170 | AT1G05440.1 | 42.183 | 339 | 168 | 8 | 15 | 336 | 46 | 373 | 2.84e-83 | 258 |
Find 75 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGTATTAGTAGATTT+TGG | 0.178212 | 1_2:+69221237 | Msa0088170:three_prime_UTR |
| CTTCATGGATACAACCAAAA+TGG | 0.183129 | 1_2:+69220981 | Msa0088170:CDS |
| ATTGAAGGTGATGATGGTTT+TGG | 0.185757 | 1_2:+69220138 | Msa0088170:CDS |
| GCAAGATGAAGAAAGATTTC+TGG | 0.232024 | 1_2:+69221134 | Msa0088170:CDS |
| ATGGAAGAATCAATGGAAAT+TGG | 0.275671 | 1_2:-69219962 | None:intergenic |
| ACTACTGAGGCACCCCATTT+TGG | 0.276024 | 1_2:-69220995 | None:intergenic |
| CAATTGAGGAGGTAACAATT+TGG | 0.305174 | 1_2:+69220617 | Msa0088170:CDS |
| AATTGAGGAGGTAACAATTT+GGG | 0.313088 | 1_2:+69220618 | Msa0088170:CDS |
| AATTTGGTTAAGGCACTATT+AGG | 0.333805 | 1_2:-69219899 | None:intergenic |
| TTCATGGATACAACCAAAAT+GGG | 0.357670 | 1_2:+69220982 | Msa0088170:CDS |
| AATACTATTGACTTCAAGTT+GGG | 0.360170 | 1_2:-69221225 | None:intergenic |
| AAGAAAATCATCAATACAAT+TGG | 0.363470 | 1_2:+69221173 | Msa0088170:CDS |
| TACTCAAGAACCCAAGTATT+AGG | 0.366691 | 1_2:-69221028 | None:intergenic |
| CGGACACTAACTATCTTATC+AGG | 0.375119 | 1_2:+69220688 | Msa0088170:CDS |
| GCAAAATTCACAGTTGCAAT+TGG | 0.380706 | 1_2:-69219843 | None:intergenic |
| TCACTACTGGGATGTCTATT+CGG | 0.384798 | 1_2:+69220668 | Msa0088170:CDS |
| GAAAGGAAAAGGGTGAAAAT+AGG | 0.385492 | 1_2:+69220092 | Msa0088170:CDS |
| ATGTTATGATTAACAATGTT+GGG | 0.391798 | 1_2:-69219935 | None:intergenic |
| TAGAATTGAAAGAAAGGAAA+AGG | 0.396592 | 1_2:+69220081 | Msa0088170:CDS |
| CATAAAGTTCAAGATTTGAA+TGG | 0.408458 | 1_2:+69220262 | Msa0088170:CDS |
| TGAAGATGAGAATTTGGTTA+AGG | 0.411953 | 1_2:-69219909 | None:intergenic |
| CACTATTAGGCATGAGATCA+AGG | 0.415994 | 1_2:-69219886 | None:intergenic |
| TGCAATTAGATCCTAATACT+TGG | 0.426848 | 1_2:+69221017 | Msa0088170:CDS |
| CTCTGGTTTAGGTTTATTGA+AGG | 0.427099 | 1_2:+69220123 | Msa0088170:CDS |
| ATGGTCTATTATTGAATTCA+AGG | 0.427828 | 1_2:+69220575 | Msa0088170:CDS |
| TTCGGAAGGCGAATACTTCA+TGG | 0.434950 | 1_2:+69220966 | Msa0088170:CDS |
| ACAGCTGGAATGATCACTAC+TGG | 0.448508 | 1_2:+69220655 | Msa0088170:CDS |
| AATGTTATGATTAACAATGT+TGG | 0.449553 | 1_2:-69219936 | None:intergenic |
| TAATACTATTGACTTCAAGT+TGG | 0.454774 | 1_2:-69221226 | None:intergenic |
| AGGTTTATTGAAGGTGATGA+TGG | 0.457190 | 1_2:+69220132 | Msa0088170:CDS |
| GAATTTGGAGGGATTGTGAA+TGG | 0.459066 | 1_2:+69220307 | Msa0088170:CDS |
| GTCAGAGGATATAGTGAAAA+GGG | 0.462251 | 1_2:+69220225 | Msa0088170:CDS |
| AGCTCAATTGTTGATGGTAA+AGG | 0.463697 | 1_2:+69221058 | Msa0088170:CDS |
| CTTGCAACCAGGGTAGTAGT+AGG | 0.468543 | 1_2:-69219813 | None:intergenic |
| GACAAGTTAGCTATATGATT+CGG | 0.471315 | 1_2:+69220948 | Msa0088170:CDS |
| GAAAGATTTCTGGCAGTTTG+TGG | 0.472904 | 1_2:+69221144 | Msa0088170:CDS |
| GGAGAAAATGGAAGAATCAA+TGG | 0.473186 | 1_2:-69219969 | None:intergenic |
| TGTCAGAGGATATAGTGAAA+AGG | 0.479850 | 1_2:+69220224 | Msa0088170:CDS |
| ATATTGTTTAGTGTTTACTA+AGG | 0.485846 | 1_2:-69221351 | None:intergenic |
| TGGTTCACAACAACAAGCTA+TGG | 0.488760 | 1_2:+69221193 | Msa0088170:CDS |
| TGTTCATAGAATTGAAAGAA+AGG | 0.490935 | 1_2:+69220075 | Msa0088170:CDS |
| GCAATTAGATCCTAATACTT+GGG | 0.494411 | 1_2:+69221018 | Msa0088170:CDS |
| GTAGCTTTACTGATAAATCA+TGG | 0.496205 | 1_2:+69220344 | Msa0088170:CDS |
| TTTATCAAGGGTTGTTTCTG+TGG | 0.502417 | 1_2:+69220186 | Msa0088170:CDS |
| AGAATTGAAAGAAAGGAAAA+GGG | 0.503700 | 1_2:+69220082 | Msa0088170:CDS |
| CTTGGGTTCTTGAGTATCAA+AGG | 0.503835 | 1_2:+69221035 | Msa0088170:CDS |
| CAAAGGAGCTCAATTGTTGA+TGG | 0.507767 | 1_2:+69221052 | Msa0088170:CDS |
| ACTATATCCTCTGACAAAGA+AGG | 0.518859 | 1_2:-69220217 | None:intergenic |
| GTTGCTGTTTAATAGTGGAA+TGG | 0.518871 | 1_2:+69220923 | Msa0088170:intron |
| GGGTGGCCTCTACAAACAGC+TGG | 0.533908 | 1_2:+69220640 | Msa0088170:CDS |
| TTAGCACTTGACTTGATCAC+AGG | 0.540401 | 1_2:-69220040 | None:intergenic |
| GGAGCTCCTCACAAGAAATG+AGG | 0.560121 | 1_2:-69221289 | None:intergenic |
| GAGGATATAGTGAAAAGGGT+TGG | 0.561715 | 1_2:+69220229 | Msa0088170:CDS |
| ACACCCGAAAAGAGTTATGA+TGG | 0.562321 | 1_2:+69219992 | Msa0088170:CDS |
| AACAGCTCCTACTACTACCC+TGG | 0.571026 | 1_2:+69219806 | Msa0088170:CDS |
| ATTGTACAAATCAGCAATTG+AGG | 0.571638 | 1_2:+69220603 | Msa0088170:CDS |
| ATTGAGGAGGTAACAATTTG+GGG | 0.571809 | 1_2:+69220619 | Msa0088170:CDS |
| GACTTGATCACAGGAGTAGA+CGG | 0.579789 | 1_2:-69220031 | None:intergenic |
| CAGCTGGAATGATCACTACT+GGG | 0.580660 | 1_2:+69220656 | Msa0088170:CDS |
| ATCATTCCAGCTGTTTGTAG+AGG | 0.580850 | 1_2:-69220646 | None:intergenic |
| TATAGTGAAAAGGGTTGGTG+AGG | 0.592518 | 1_2:+69220234 | Msa0088170:CDS |
| GAGCTCCTCACAAGAAATGA+GGG | 0.597098 | 1_2:-69221288 | None:intergenic |
| CAAAACCCTCATTTCTTGTG+AGG | 0.597573 | 1_2:+69221283 | Msa0088170:three_prime_UTR |
| GGTTCACAACAACAAGCTAT+GGG | 0.612900 | 1_2:+69221194 | Msa0088170:CDS |
| ACTATTAGGCATGAGATCAA+GGG | 0.627357 | 1_2:-69219885 | None:intergenic |
| ATACTATTGACTTCAAGTTG+GGG | 0.631468 | 1_2:-69221224 | None:intergenic |
| TAAATCATGGAAAATCAACC+AGG | 0.642725 | 1_2:+69220357 | Msa0088170:CDS |
| AGGATCTAATTGCACTACTG+AGG | 0.655302 | 1_2:-69221008 | None:intergenic |
| GCTGTTTAATAGTGGAATGG+TGG | 0.659502 | 1_2:+69220926 | Msa0088170:intron |
| AGTTAGCTATATGATTCGGA+AGG | 0.662338 | 1_2:+69220952 | Msa0088170:CDS |
| CTTATCAGGAAGAGTTACTG+AGG | 0.667601 | 1_2:+69220702 | Msa0088170:CDS |
| GTACAAATCAGCAATTGAGG+AGG | 0.679432 | 1_2:+69220606 | Msa0088170:CDS |
| TTGATGAAGGTGGAATCTCA+TGG | 0.695968 | 1_2:-69219744 | None:intergenic |
| TTGAGGAGGTAACAATTTGG+GGG | 0.703782 | 1_2:+69220620 | Msa0088170:CDS |
| TCATGGATACAACCAAAATG+GGG | 0.715904 | 1_2:+69220983 | Msa0088170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGCATTTTTTATTTCT+TGG | + | chr1_2:69220442-69220461 | Msa0088170:intron | 15.0% |
| !!! | TTTTGCATTTTTTATTTCTT+GGG | + | chr1_2:69220443-69220462 | Msa0088170:intron | 15.0% |
| !!! | ATTTTGCATTTTTTATTTCT+TGG | + | chr1_2:69220442-69220461 | Msa0088170:intron | 15.0% |
| !!! | TTTTGCATTTTTTATTTCTT+GGG | + | chr1_2:69220443-69220462 | Msa0088170:intron | 15.0% |
| !! | ATGTTATGATTAACAATGTT+GGG | - | chr1_2:69219938-69219957 | None:intergenic | 20.0% |
| !! | AATGTTATGATTAACAATGT+TGG | - | chr1_2:69219939-69219958 | None:intergenic | 20.0% |
| !! | CATCAACTAAAATTGTATAT+AGG | + | chr1_2:69220552-69220571 | Msa0088170:intron | 20.0% |
| !! | AACTAAAATTGTATATAGGA+TGG | + | chr1_2:69220556-69220575 | Msa0088170:intron | 20.0% |
| !!! | AATAAAAAGGGAAAACATTT+TGG | - | chr1_2:69220736-69220755 | None:intergenic | 20.0% |
| !!! | TTTCCCTTTTTATTTGATTT+AGG | + | chr1_2:69220742-69220761 | Msa0088170:intron | 20.0% |
| !!! | TTCCCTTTTTATTTGATTTA+GGG | + | chr1_2:69220743-69220762 | Msa0088170:intron | 20.0% |
| !!! | ACTAATTGAATGTAATGTTT+TGG | + | chr1_2:69220801-69220820 | Msa0088170:intron | 20.0% |
| !! | AAGAAAATCATCAATACAAT+TGG | + | chr1_2:69221173-69221192 | Msa0088170:CDS | 20.0% |
| !!! | TCAATAGTATTAGTAGATTT+TGG | + | chr1_2:69221237-69221256 | Msa0088170:three_prime_UTR | 20.0% |
| !! | ATATTGTTTAGTGTTTACTA+AGG | - | chr1_2:69221354-69221373 | None:intergenic | 20.0% |
| !! | ATGTTATGATTAACAATGTT+GGG | - | chr1_2:69219938-69219957 | None:intergenic | 20.0% |
| !! | AATGTTATGATTAACAATGT+TGG | - | chr1_2:69219939-69219958 | None:intergenic | 20.0% |
| !! | CATCAACTAAAATTGTATAT+AGG | + | chr1_2:69220552-69220571 | Msa0088170:intron | 20.0% |
| !! | AACTAAAATTGTATATAGGA+TGG | + | chr1_2:69220556-69220575 | Msa0088170:intron | 20.0% |
| !!! | AATAAAAAGGGAAAACATTT+TGG | - | chr1_2:69220736-69220755 | None:intergenic | 20.0% |
| !!! | TTTCCCTTTTTATTTGATTT+AGG | + | chr1_2:69220742-69220761 | Msa0088170:intron | 20.0% |
| !!! | TTCCCTTTTTATTTGATTTA+GGG | + | chr1_2:69220743-69220762 | Msa0088170:intron | 20.0% |
| !!! | ACTAATTGAATGTAATGTTT+TGG | + | chr1_2:69220801-69220820 | Msa0088170:intron | 20.0% |
| !! | AAGAAAATCATCAATACAAT+TGG | + | chr1_2:69221173-69221192 | Msa0088170:CDS | 20.0% |
| !!! | TCAATAGTATTAGTAGATTT+TGG | + | chr1_2:69221237-69221256 | Msa0088170:three_prime_UTR | 20.0% |
| !! | ATATTGTTTAGTGTTTACTA+AGG | - | chr1_2:69221354-69221373 | None:intergenic | 20.0% |
| !!! | TGTTAGATTTTGATTGATGA+AGG | - | chr1_2:69219760-69219779 | None:intergenic | 25.0% |
| ! | TGTTCATAGAATTGAAAGAA+AGG | + | chr1_2:69220075-69220094 | Msa0088170:CDS | 25.0% |
| ! | TAGAATTGAAAGAAAGGAAA+AGG | + | chr1_2:69220081-69220100 | Msa0088170:CDS | 25.0% |
| ! | AGAATTGAAAGAAAGGAAAA+GGG | + | chr1_2:69220082-69220101 | Msa0088170:CDS | 25.0% |
| ! | CATAAAGTTCAAGATTTGAA+TGG | + | chr1_2:69220262-69220281 | Msa0088170:CDS | 25.0% |
| ! | TCTACAAACAATATAATACC+TGG | - | chr1_2:69220378-69220397 | None:intergenic | 25.0% |
| ! | ATGGTCTATTATTGAATTCA+AGG | + | chr1_2:69220575-69220594 | Msa0088170:CDS | 25.0% |
| ! | GTCCCTAAATCAAATAAAAA+GGG | - | chr1_2:69220748-69220767 | None:intergenic | 25.0% |
| ! | TGTCCCTAAATCAAATAAAA+AGG | - | chr1_2:69220749-69220768 | None:intergenic | 25.0% |
| !! | CCATTTTATCAAATTATCAC+CGG | - | chr1_2:69220781-69220800 | None:intergenic | 25.0% |
| !!! | TTTTCAAGTATAGGATTTCA+AGG | + | chr1_2:69221104-69221123 | Msa0088170:CDS | 25.0% |
| !!! | AATACTATTGACTTCAAGTT+GGG | - | chr1_2:69221228-69221247 | None:intergenic | 25.0% |
| !!! | TAATACTATTGACTTCAAGT+TGG | - | chr1_2:69221229-69221248 | None:intergenic | 25.0% |
| !!! | TCCAACTTTTTTACTTGTAA+AGG | + | chr1_2:69221309-69221328 | Msa0088170:three_prime_UTR | 25.0% |
| ! | ACCTTTACAAGTAAAAAAGT+TGG | - | chr1_2:69221313-69221332 | None:intergenic | 25.0% |
| !!! | TGTTAGATTTTGATTGATGA+AGG | - | chr1_2:69219760-69219779 | None:intergenic | 25.0% |
| ! | TGTTCATAGAATTGAAAGAA+AGG | + | chr1_2:69220075-69220094 | Msa0088170:CDS | 25.0% |
| ! | TAGAATTGAAAGAAAGGAAA+AGG | + | chr1_2:69220081-69220100 | Msa0088170:CDS | 25.0% |
| ! | AGAATTGAAAGAAAGGAAAA+GGG | + | chr1_2:69220082-69220101 | Msa0088170:CDS | 25.0% |
| ! | CATAAAGTTCAAGATTTGAA+TGG | + | chr1_2:69220262-69220281 | Msa0088170:CDS | 25.0% |
| ! | TCTACAAACAATATAATACC+TGG | - | chr1_2:69220378-69220397 | None:intergenic | 25.0% |
| ! | ATGGTCTATTATTGAATTCA+AGG | + | chr1_2:69220575-69220594 | Msa0088170:CDS | 25.0% |
| ! | GTCCCTAAATCAAATAAAAA+GGG | - | chr1_2:69220748-69220767 | None:intergenic | 25.0% |
| ! | TGTCCCTAAATCAAATAAAA+AGG | - | chr1_2:69220749-69220768 | None:intergenic | 25.0% |
| !! | CCATTTTATCAAATTATCAC+CGG | - | chr1_2:69220781-69220800 | None:intergenic | 25.0% |
| !!! | TTTTCAAGTATAGGATTTCA+AGG | + | chr1_2:69221104-69221123 | Msa0088170:CDS | 25.0% |
| !!! | AATACTATTGACTTCAAGTT+GGG | - | chr1_2:69221228-69221247 | None:intergenic | 25.0% |
| !!! | TAATACTATTGACTTCAAGT+TGG | - | chr1_2:69221229-69221248 | None:intergenic | 25.0% |
| !!! | TCCAACTTTTTTACTTGTAA+AGG | + | chr1_2:69221309-69221328 | Msa0088170:three_prime_UTR | 25.0% |
| ! | ACCTTTACAAGTAAAAAAGT+TGG | - | chr1_2:69221313-69221332 | None:intergenic | 25.0% |
| !!! | TAGATTTTGATTGATGAAGG+TGG | - | chr1_2:69219757-69219776 | None:intergenic | 30.0% |
| ! | AATTTGGTTAAGGCACTATT+AGG | - | chr1_2:69219902-69219921 | None:intergenic | 30.0% |
| TGAAGATGAGAATTTGGTTA+AGG | - | chr1_2:69219912-69219931 | None:intergenic | 30.0% | |
| ATGGAAGAATCAATGGAAAT+TGG | - | chr1_2:69219965-69219984 | None:intergenic | 30.0% | |
| ! | TACACCATCATAACTCTTTT+CGG | - | chr1_2:69219999-69220018 | None:intergenic | 30.0% |
| !! | GAAAATAGGTGTTTTTACTC+TGG | + | chr1_2:69220106-69220125 | Msa0088170:CDS | 30.0% |
| !!! | TTGCTGATGTTGTTTTATCA+AGG | + | chr1_2:69220173-69220192 | Msa0088170:CDS | 30.0% |
| !!! | TGCTGATGTTGTTTTATCAA+GGG | + | chr1_2:69220174-69220193 | Msa0088170:CDS | 30.0% |
| ! | AAAGTTGAAGTTTTTGCAGA+AGG | + | chr1_2:69220285-69220304 | Msa0088170:CDS | 30.0% |
| ! | AAGTTTTTGCAGAAGGAATT+TGG | + | chr1_2:69220292-69220311 | Msa0088170:CDS | 30.0% |
| ! | GTAGCTTTACTGATAAATCA+TGG | + | chr1_2:69220344-69220363 | Msa0088170:CDS | 30.0% |
| TAAATCATGGAAAATCAACC+AGG | + | chr1_2:69220357-69220376 | Msa0088170:CDS | 30.0% | |
| ATTGTACAAATCAGCAATTG+AGG | + | chr1_2:69220603-69220622 | Msa0088170:CDS | 30.0% | |
| AATTGAGGAGGTAACAATTT+GGG | + | chr1_2:69220618-69220637 | Msa0088170:CDS | 30.0% | |
| CCGGTGATAATTTGATAAAA+TGG | + | chr1_2:69220778-69220797 | Msa0088170:intron | 30.0% | |
| !!! | GTTTTGTTGCTGTTTAATAG+TGG | + | chr1_2:69220918-69220937 | Msa0088170:intron | 30.0% |
| GACAAGTTAGCTATATGATT+CGG | + | chr1_2:69220948-69220967 | Msa0088170:CDS | 30.0% | |
| TTCATGGATACAACCAAAAT+GGG | + | chr1_2:69220982-69221001 | Msa0088170:CDS | 30.0% | |
| TGCAATTAGATCCTAATACT+TGG | + | chr1_2:69221017-69221036 | Msa0088170:CDS | 30.0% | |
| GCAATTAGATCCTAATACTT+GGG | + | chr1_2:69221018-69221037 | Msa0088170:CDS | 30.0% | |
| !! | ATACTATTGACTTCAAGTTG+GGG | - | chr1_2:69221227-69221246 | None:intergenic | 30.0% |
| !!! | TAGATTTTGATTGATGAAGG+TGG | - | chr1_2:69219757-69219776 | None:intergenic | 30.0% |
| ! | AATTTGGTTAAGGCACTATT+AGG | - | chr1_2:69219902-69219921 | None:intergenic | 30.0% |
| TGAAGATGAGAATTTGGTTA+AGG | - | chr1_2:69219912-69219931 | None:intergenic | 30.0% | |
| ATGGAAGAATCAATGGAAAT+TGG | - | chr1_2:69219965-69219984 | None:intergenic | 30.0% | |
| ! | TACACCATCATAACTCTTTT+CGG | - | chr1_2:69219999-69220018 | None:intergenic | 30.0% |
| !! | GAAAATAGGTGTTTTTACTC+TGG | + | chr1_2:69220106-69220125 | Msa0088170:CDS | 30.0% |
| !!! | TTGCTGATGTTGTTTTATCA+AGG | + | chr1_2:69220173-69220192 | Msa0088170:CDS | 30.0% |
| !!! | TGCTGATGTTGTTTTATCAA+GGG | + | chr1_2:69220174-69220193 | Msa0088170:CDS | 30.0% |
| ! | AAAGTTGAAGTTTTTGCAGA+AGG | + | chr1_2:69220285-69220304 | Msa0088170:CDS | 30.0% |
| ! | AAGTTTTTGCAGAAGGAATT+TGG | + | chr1_2:69220292-69220311 | Msa0088170:CDS | 30.0% |
| ! | GTAGCTTTACTGATAAATCA+TGG | + | chr1_2:69220344-69220363 | Msa0088170:CDS | 30.0% |
| TAAATCATGGAAAATCAACC+AGG | + | chr1_2:69220357-69220376 | Msa0088170:CDS | 30.0% | |
| ATTGTACAAATCAGCAATTG+AGG | + | chr1_2:69220603-69220622 | Msa0088170:CDS | 30.0% | |
| AATTGAGGAGGTAACAATTT+GGG | + | chr1_2:69220618-69220637 | Msa0088170:CDS | 30.0% | |
| CCGGTGATAATTTGATAAAA+TGG | + | chr1_2:69220778-69220797 | Msa0088170:intron | 30.0% | |
| !!! | GTTTTGTTGCTGTTTAATAG+TGG | + | chr1_2:69220918-69220937 | Msa0088170:intron | 30.0% |
| GACAAGTTAGCTATATGATT+CGG | + | chr1_2:69220948-69220967 | Msa0088170:CDS | 30.0% | |
| TTCATGGATACAACCAAAAT+GGG | + | chr1_2:69220982-69221001 | Msa0088170:CDS | 30.0% | |
| TGCAATTAGATCCTAATACT+TGG | + | chr1_2:69221017-69221036 | Msa0088170:CDS | 30.0% | |
| GCAATTAGATCCTAATACTT+GGG | + | chr1_2:69221018-69221037 | Msa0088170:CDS | 30.0% | |
| !! | ATACTATTGACTTCAAGTTG+GGG | - | chr1_2:69221227-69221246 | None:intergenic | 30.0% |
| GCAAAATTCACAGTTGCAAT+TGG | - | chr1_2:69219846-69219865 | None:intergenic | 35.0% | |
| ACTATTAGGCATGAGATCAA+GGG | - | chr1_2:69219888-69219907 | None:intergenic | 35.0% | |
| !!! | GGGTTTTGAAGATGAGAATT+TGG | - | chr1_2:69219918-69219937 | None:intergenic | 35.0% |
| GGAGAAAATGGAAGAATCAA+TGG | - | chr1_2:69219972-69219991 | None:intergenic | 35.0% | |
| ! | ACACCATCATAACTCTTTTC+GGG | - | chr1_2:69219998-69220017 | None:intergenic | 35.0% |
| GAAAGGAAAAGGGTGAAAAT+AGG | + | chr1_2:69220092-69220111 | Msa0088170:CDS | 35.0% | |
| !! | AGGTGTTTTTACTCTGGTTT+AGG | + | chr1_2:69220112-69220131 | Msa0088170:CDS | 35.0% |
| ! | CTCTGGTTTAGGTTTATTGA+AGG | + | chr1_2:69220123-69220142 | Msa0088170:CDS | 35.0% |
| AGGTTTATTGAAGGTGATGA+TGG | + | chr1_2:69220132-69220151 | Msa0088170:CDS | 35.0% | |
| !!! | ATTGAAGGTGATGATGGTTT+TGG | + | chr1_2:69220138-69220157 | Msa0088170:CDS | 35.0% |
| !!! | TTGAAGGTGATGATGGTTTT+GGG | + | chr1_2:69220139-69220158 | Msa0088170:CDS | 35.0% |
| !! | TTTATCAAGGGTTGTTTCTG+TGG | + | chr1_2:69220186-69220205 | Msa0088170:CDS | 35.0% |
| ! | TTTTCAACCTTCTTTGTCAG+AGG | + | chr1_2:69220210-69220229 | Msa0088170:CDS | 35.0% |
| ACTATATCCTCTGACAAAGA+AGG | - | chr1_2:69220220-69220239 | None:intergenic | 35.0% | |
| TGTCAGAGGATATAGTGAAA+AGG | + | chr1_2:69220224-69220243 | Msa0088170:CDS | 35.0% | |
| GTCAGAGGATATAGTGAAAA+GGG | + | chr1_2:69220225-69220244 | Msa0088170:CDS | 35.0% | |
| ! | TTTTTGCAGAAGGAATTTGG+AGG | + | chr1_2:69220295-69220314 | Msa0088170:CDS | 35.0% |
| ! | TTTTGCAGAAGGAATTTGGA+GGG | + | chr1_2:69220296-69220315 | Msa0088170:CDS | 35.0% |
| CAATTGAGGAGGTAACAATT+TGG | + | chr1_2:69220617-69220636 | Msa0088170:CDS | 35.0% | |
| ATTGAGGAGGTAACAATTTG+GGG | + | chr1_2:69220619-69220638 | Msa0088170:CDS | 35.0% | |
| TTTAGGGACACAATACAAAC+CGG | + | chr1_2:69220759-69220778 | Msa0088170:intron | 35.0% | |
| TCACGAACACTTTAGATTGA+AGG | - | chr1_2:69220867-69220886 | None:intergenic | 35.0% | |
| !! | GTTGCTGTTTAATAGTGGAA+TGG | + | chr1_2:69220923-69220942 | Msa0088170:intron | 35.0% |
| ! | AGTTAGCTATATGATTCGGA+AGG | + | chr1_2:69220952-69220971 | Msa0088170:CDS | 35.0% |
| CTTCATGGATACAACCAAAA+TGG | + | chr1_2:69220981-69221000 | Msa0088170:CDS | 35.0% | |
| TCATGGATACAACCAAAATG+GGG | + | chr1_2:69220983-69221002 | Msa0088170:CDS | 35.0% | |
| TACTCAAGAACCCAAGTATT+AGG | - | chr1_2:69221031-69221050 | None:intergenic | 35.0% | |
| !! | AGCTCAATTGTTGATGGTAA+AGG | + | chr1_2:69221058-69221077 | Msa0088170:CDS | 35.0% |
| !!! | CGTTGGAGATTTTCAAGTAT+AGG | + | chr1_2:69221095-69221114 | Msa0088170:CDS | 35.0% |
| GCAAGATGAAGAAAGATTTC+TGG | + | chr1_2:69221134-69221153 | Msa0088170:CDS | 35.0% | |
| ATCTCATGGTTGAATTCTTG+AGG | - | chr1_2:69219733-69219752 | None:intergenic | 35.0% | |
| GCAAAATTCACAGTTGCAAT+TGG | - | chr1_2:69219846-69219865 | None:intergenic | 35.0% | |
| ACTATTAGGCATGAGATCAA+GGG | - | chr1_2:69219888-69219907 | None:intergenic | 35.0% | |
| !!! | GGGTTTTGAAGATGAGAATT+TGG | - | chr1_2:69219918-69219937 | None:intergenic | 35.0% |
| GGAGAAAATGGAAGAATCAA+TGG | - | chr1_2:69219972-69219991 | None:intergenic | 35.0% | |
| ! | ACACCATCATAACTCTTTTC+GGG | - | chr1_2:69219998-69220017 | None:intergenic | 35.0% |
| GAAAGGAAAAGGGTGAAAAT+AGG | + | chr1_2:69220092-69220111 | Msa0088170:CDS | 35.0% | |
| !! | AGGTGTTTTTACTCTGGTTT+AGG | + | chr1_2:69220112-69220131 | Msa0088170:CDS | 35.0% |
| ! | CTCTGGTTTAGGTTTATTGA+AGG | + | chr1_2:69220123-69220142 | Msa0088170:CDS | 35.0% |
| AGGTTTATTGAAGGTGATGA+TGG | + | chr1_2:69220132-69220151 | Msa0088170:CDS | 35.0% | |
| !!! | ATTGAAGGTGATGATGGTTT+TGG | + | chr1_2:69220138-69220157 | Msa0088170:CDS | 35.0% |
| !!! | TTGAAGGTGATGATGGTTTT+GGG | + | chr1_2:69220139-69220158 | Msa0088170:CDS | 35.0% |
| !! | TTTATCAAGGGTTGTTTCTG+TGG | + | chr1_2:69220186-69220205 | Msa0088170:CDS | 35.0% |
| ! | TTTTCAACCTTCTTTGTCAG+AGG | + | chr1_2:69220210-69220229 | Msa0088170:CDS | 35.0% |
| ACTATATCCTCTGACAAAGA+AGG | - | chr1_2:69220220-69220239 | None:intergenic | 35.0% | |
| TGTCAGAGGATATAGTGAAA+AGG | + | chr1_2:69220224-69220243 | Msa0088170:CDS | 35.0% | |
| GTCAGAGGATATAGTGAAAA+GGG | + | chr1_2:69220225-69220244 | Msa0088170:CDS | 35.0% | |
| ! | TTTTTGCAGAAGGAATTTGG+AGG | + | chr1_2:69220295-69220314 | Msa0088170:CDS | 35.0% |
| ! | TTTTGCAGAAGGAATTTGGA+GGG | + | chr1_2:69220296-69220315 | Msa0088170:CDS | 35.0% |
| CAATTGAGGAGGTAACAATT+TGG | + | chr1_2:69220617-69220636 | Msa0088170:CDS | 35.0% | |
| ATTGAGGAGGTAACAATTTG+GGG | + | chr1_2:69220619-69220638 | Msa0088170:CDS | 35.0% | |
| TTTAGGGACACAATACAAAC+CGG | + | chr1_2:69220759-69220778 | Msa0088170:intron | 35.0% | |
| TCACGAACACTTTAGATTGA+AGG | - | chr1_2:69220867-69220886 | None:intergenic | 35.0% | |
| !! | GTTGCTGTTTAATAGTGGAA+TGG | + | chr1_2:69220923-69220942 | Msa0088170:intron | 35.0% |
| ! | AGTTAGCTATATGATTCGGA+AGG | + | chr1_2:69220952-69220971 | Msa0088170:CDS | 35.0% |
| CTTCATGGATACAACCAAAA+TGG | + | chr1_2:69220981-69221000 | Msa0088170:CDS | 35.0% | |
| TCATGGATACAACCAAAATG+GGG | + | chr1_2:69220983-69221002 | Msa0088170:CDS | 35.0% | |
| TACTCAAGAACCCAAGTATT+AGG | - | chr1_2:69221031-69221050 | None:intergenic | 35.0% | |
| !! | AGCTCAATTGTTGATGGTAA+AGG | + | chr1_2:69221058-69221077 | Msa0088170:CDS | 35.0% |
| !!! | CGTTGGAGATTTTCAAGTAT+AGG | + | chr1_2:69221095-69221114 | Msa0088170:CDS | 35.0% |
| GCAAGATGAAGAAAGATTTC+TGG | + | chr1_2:69221134-69221153 | Msa0088170:CDS | 35.0% | |
| TTGATGAAGGTGGAATCTCA+TGG | - | chr1_2:69219747-69219766 | None:intergenic | 40.0% | |
| CACTATTAGGCATGAGATCA+AGG | - | chr1_2:69219889-69219908 | None:intergenic | 40.0% | |
| !!! | ATCATAACTCTTTTCGGGTG+TGG | - | chr1_2:69219993-69220012 | None:intergenic | 40.0% |
| ACACCCGAAAAGAGTTATGA+TGG | + | chr1_2:69219992-69220011 | Msa0088170:CDS | 40.0% | |
| ! | TTAGCACTTGACTTGATCAC+AGG | - | chr1_2:69220043-69220062 | None:intergenic | 40.0% |
| !!! | TGAAGGTGATGATGGTTTTG+GGG | + | chr1_2:69220140-69220159 | Msa0088170:CDS | 40.0% |
| GAGGATATAGTGAAAAGGGT+TGG | + | chr1_2:69220229-69220248 | Msa0088170:CDS | 40.0% | |
| !! | TATAGTGAAAAGGGTTGGTG+AGG | + | chr1_2:69220234-69220253 | Msa0088170:CDS | 40.0% |
| GAATTTGGAGGGATTGTGAA+TGG | + | chr1_2:69220307-69220326 | Msa0088170:CDS | 40.0% | |
| GTACAAATCAGCAATTGAGG+AGG | + | chr1_2:69220606-69220625 | Msa0088170:CDS | 40.0% | |
| TTGAGGAGGTAACAATTTGG+GGG | + | chr1_2:69220620-69220639 | Msa0088170:CDS | 40.0% | |
| ATCATTCCAGCTGTTTGTAG+AGG | - | chr1_2:69220649-69220668 | None:intergenic | 40.0% | |
| TCACTACTGGGATGTCTATT+CGG | + | chr1_2:69220668-69220687 | Msa0088170:CDS | 40.0% | |
| CGGACACTAACTATCTTATC+AGG | + | chr1_2:69220688-69220707 | Msa0088170:CDS | 40.0% | |
| CTTATCAGGAAGAGTTACTG+AGG | + | chr1_2:69220702-69220721 | Msa0088170:CDS | 40.0% | |
| GTCTAACATTAGTCGCACAT+CGG | + | chr1_2:69220836-69220855 | Msa0088170:intron | 40.0% | |
| ! | GCTGTTTAATAGTGGAATGG+TGG | + | chr1_2:69220926-69220945 | Msa0088170:intron | 40.0% |
| AGGATCTAATTGCACTACTG+AGG | - | chr1_2:69221011-69221030 | None:intergenic | 40.0% | |
| CTTGGGTTCTTGAGTATCAA+AGG | + | chr1_2:69221035-69221054 | Msa0088170:CDS | 40.0% | |
| CAAAGGAGCTCAATTGTTGA+TGG | + | chr1_2:69221052-69221071 | Msa0088170:CDS | 40.0% | |
| ! | AGGATTGTTTTCTACAGCGT+TGG | + | chr1_2:69221078-69221097 | Msa0088170:CDS | 40.0% |
| !! | GAAAGATTTCTGGCAGTTTG+TGG | + | chr1_2:69221144-69221163 | Msa0088170:CDS | 40.0% |
| TGGTTCACAACAACAAGCTA+TGG | + | chr1_2:69221193-69221212 | Msa0088170:CDS | 40.0% | |
| GGTTCACAACAACAAGCTAT+GGG | + | chr1_2:69221194-69221213 | Msa0088170:CDS | 40.0% | |
| CAAAACCCTCATTTCTTGTG+AGG | + | chr1_2:69221283-69221302 | Msa0088170:three_prime_UTR | 40.0% | |
| TTGATGAAGGTGGAATCTCA+TGG | - | chr1_2:69219747-69219766 | None:intergenic | 40.0% | |
| CACTATTAGGCATGAGATCA+AGG | - | chr1_2:69219889-69219908 | None:intergenic | 40.0% | |
| !!! | ATCATAACTCTTTTCGGGTG+TGG | - | chr1_2:69219993-69220012 | None:intergenic | 40.0% |
| ACACCCGAAAAGAGTTATGA+TGG | + | chr1_2:69219992-69220011 | Msa0088170:CDS | 40.0% | |
| ! | TTAGCACTTGACTTGATCAC+AGG | - | chr1_2:69220043-69220062 | None:intergenic | 40.0% |
| !!! | TGAAGGTGATGATGGTTTTG+GGG | + | chr1_2:69220140-69220159 | Msa0088170:CDS | 40.0% |
| GAGGATATAGTGAAAAGGGT+TGG | + | chr1_2:69220229-69220248 | Msa0088170:CDS | 40.0% | |
| !! | TATAGTGAAAAGGGTTGGTG+AGG | + | chr1_2:69220234-69220253 | Msa0088170:CDS | 40.0% |
| GAATTTGGAGGGATTGTGAA+TGG | + | chr1_2:69220307-69220326 | Msa0088170:CDS | 40.0% | |
| GTACAAATCAGCAATTGAGG+AGG | + | chr1_2:69220606-69220625 | Msa0088170:CDS | 40.0% | |
| TTGAGGAGGTAACAATTTGG+GGG | + | chr1_2:69220620-69220639 | Msa0088170:CDS | 40.0% | |
| ATCATTCCAGCTGTTTGTAG+AGG | - | chr1_2:69220649-69220668 | None:intergenic | 40.0% | |
| TCACTACTGGGATGTCTATT+CGG | + | chr1_2:69220668-69220687 | Msa0088170:CDS | 40.0% | |
| CGGACACTAACTATCTTATC+AGG | + | chr1_2:69220688-69220707 | Msa0088170:CDS | 40.0% | |
| CTTATCAGGAAGAGTTACTG+AGG | + | chr1_2:69220702-69220721 | Msa0088170:CDS | 40.0% | |
| GTCTAACATTAGTCGCACAT+CGG | + | chr1_2:69220836-69220855 | Msa0088170:intron | 40.0% | |
| ! | GCTGTTTAATAGTGGAATGG+TGG | + | chr1_2:69220926-69220945 | Msa0088170:intron | 40.0% |
| AGGATCTAATTGCACTACTG+AGG | - | chr1_2:69221011-69221030 | None:intergenic | 40.0% | |
| CTTGGGTTCTTGAGTATCAA+AGG | + | chr1_2:69221035-69221054 | Msa0088170:CDS | 40.0% | |
| CAAAGGAGCTCAATTGTTGA+TGG | + | chr1_2:69221052-69221071 | Msa0088170:CDS | 40.0% | |
| ! | AGGATTGTTTTCTACAGCGT+TGG | + | chr1_2:69221078-69221097 | Msa0088170:CDS | 40.0% |
| !! | GAAAGATTTCTGGCAGTTTG+TGG | + | chr1_2:69221144-69221163 | Msa0088170:CDS | 40.0% |
| TGGTTCACAACAACAAGCTA+TGG | + | chr1_2:69221193-69221212 | Msa0088170:CDS | 40.0% | |
| GGTTCACAACAACAAGCTAT+GGG | + | chr1_2:69221194-69221213 | Msa0088170:CDS | 40.0% | |
| CAAAACCCTCATTTCTTGTG+AGG | + | chr1_2:69221283-69221302 | Msa0088170:three_prime_UTR | 40.0% | |
| ! | TGGCGTTTTTCTTGCAACCA+GGG | - | chr1_2:69219826-69219845 | None:intergenic | 45.0% |
| ! | TTGGCGTTTTTCTTGCAACC+AGG | - | chr1_2:69219827-69219846 | None:intergenic | 45.0% |
| !!! | CTTTTCGGGTGTGGAGAAAA+TGG | - | chr1_2:69219984-69220003 | None:intergenic | 45.0% |
| GACTTGATCACAGGAGTAGA+CGG | - | chr1_2:69220034-69220053 | None:intergenic | 45.0% | |
| !!! | GAAGGTGATGATGGTTTTGG+GGG | + | chr1_2:69220141-69220160 | Msa0088170:CDS | 45.0% |
| ACAGCTGGAATGATCACTAC+TGG | + | chr1_2:69220655-69220674 | Msa0088170:CDS | 45.0% | |
| CAGCTGGAATGATCACTACT+GGG | + | chr1_2:69220656-69220675 | Msa0088170:CDS | 45.0% | |
| TTCGGAAGGCGAATACTTCA+TGG | + | chr1_2:69220966-69220985 | Msa0088170:CDS | 45.0% | |
| GAGCTCCTCACAAGAAATGA+GGG | - | chr1_2:69221291-69221310 | None:intergenic | 45.0% | |
| ! | TGGCGTTTTTCTTGCAACCA+GGG | - | chr1_2:69219826-69219845 | None:intergenic | 45.0% |
| ! | TTGGCGTTTTTCTTGCAACC+AGG | - | chr1_2:69219827-69219846 | None:intergenic | 45.0% |
| !!! | CTTTTCGGGTGTGGAGAAAA+TGG | - | chr1_2:69219984-69220003 | None:intergenic | 45.0% |
| GACTTGATCACAGGAGTAGA+CGG | - | chr1_2:69220034-69220053 | None:intergenic | 45.0% | |
| !!! | GAAGGTGATGATGGTTTTGG+GGG | + | chr1_2:69220141-69220160 | Msa0088170:CDS | 45.0% |
| ACAGCTGGAATGATCACTAC+TGG | + | chr1_2:69220655-69220674 | Msa0088170:CDS | 45.0% | |
| CAGCTGGAATGATCACTACT+GGG | + | chr1_2:69220656-69220675 | Msa0088170:CDS | 45.0% | |
| TTCGGAAGGCGAATACTTCA+TGG | + | chr1_2:69220966-69220985 | Msa0088170:CDS | 45.0% | |
| GAGCTCCTCACAAGAAATGA+GGG | - | chr1_2:69221291-69221310 | None:intergenic | 45.0% | |
| AACAGCTCCTACTACTACCC+TGG | + | chr1_2:69219806-69219825 | Msa0088170:CDS | 50.0% | |
| CTTGCAACCAGGGTAGTAGT+AGG | - | chr1_2:69219816-69219835 | None:intergenic | 50.0% | |
| AGGAGGTAACAATTTGGGGG+TGG | + | chr1_2:69220623-69220642 | Msa0088170:CDS | 50.0% | |
| !! | ACTACTGAGGCACCCCATTT+TGG | - | chr1_2:69220998-69221017 | None:intergenic | 50.0% |
| GGAGCTCCTCACAAGAAATG+AGG | - | chr1_2:69221292-69221311 | None:intergenic | 50.0% | |
| AACAGCTCCTACTACTACCC+TGG | + | chr1_2:69219806-69219825 | Msa0088170:CDS | 50.0% | |
| CTTGCAACCAGGGTAGTAGT+AGG | - | chr1_2:69219816-69219835 | None:intergenic | 50.0% | |
| AGGAGGTAACAATTTGGGGG+TGG | + | chr1_2:69220623-69220642 | Msa0088170:CDS | 50.0% | |
| !! | ACTACTGAGGCACCCCATTT+TGG | - | chr1_2:69220998-69221017 | None:intergenic | 50.0% |
| GGAGCTCCTCACAAGAAATG+AGG | - | chr1_2:69221292-69221311 | None:intergenic | 50.0% | |
| GGGTGGCCTCTACAAACAGC+TGG | + | chr1_2:69220640-69220659 | Msa0088170:CDS | 60.0% | |
| GGGTGGCCTCTACAAACAGC+TGG | + | chr1_2:69220640-69220659 | Msa0088170:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69219733 | 69221384 | 69219733 | ID=Msa0088170;Name=Msa0088170 |
| chr1_2 | mRNA | 69219733 | 69221384 | 69219733 | ID=Msa0088170-mRNA-1;Parent=Msa0088170;Name=Msa0088170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=13|1|1|1|1|1|3|150|359 |
| chr1_2 | exon | 69219733 | 69220378 | 69219733 | ID=Msa0088170-mRNA-1:exon:23742;Parent=Msa0088170-mRNA-1 |
| chr1_2 | exon | 69220574 | 69220723 | 69220574 | ID=Msa0088170-mRNA-1:exon:23743;Parent=Msa0088170-mRNA-1 |
| chr1_2 | exon | 69220938 | 69221384 | 69220938 | ID=Msa0088170-mRNA-1:exon:23744;Parent=Msa0088170-mRNA-1 |
| chr1_2 | five_prime_UTR | 69219733 | 69219745 | 69219733 | ID=Msa0088170-mRNA-1:five_prime_utr;Parent=Msa0088170-mRNA-1 |
| chr1_2 | CDS | 69219746 | 69220378 | 69219746 | ID=Msa0088170-mRNA-1:cds;Parent=Msa0088170-mRNA-1 |
| chr1_2 | CDS | 69220574 | 69220723 | 69220574 | ID=Msa0088170-mRNA-1:cds;Parent=Msa0088170-mRNA-1 |
| chr1_2 | CDS | 69220938 | 69221234 | 69220938 | ID=Msa0088170-mRNA-1:cds;Parent=Msa0088170-mRNA-1 |
| chr1_2 | three_prime_UTR | 69221235 | 69221384 | 69221235 | ID=Msa0088170-mRNA-1:three_prime_utr;Parent=Msa0088170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
