Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135300 | AAR01224.1 | 97.368 | 342 | 4 | 2 | 97 | 436 | 1 | 339 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135300 | sp|Q2RAC5|CCT13_ORYSJ | 52.261 | 199 | 95 | 0 | 238 | 436 | 38 | 236 | 1.99e-65 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135300 | Q6EEW1 | 97.368 | 342 | 4 | 2 | 97 | 436 | 1 | 339 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040520 | Msa0135300 | 0.945783 | 1.597728e-104 | -8.615850e-47 |
| Msa0135300 | Msa0179800 | 0.909084 | 8.420598e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135300 | MtrunA17_Chr1g0205721 | 95.092 | 326 | 9 | 3 | 97 | 418 | 1 | 323 | 0.0 | 593 |
| Msa0135300 | MtrunA17_Chr4g0043411 | 53.266 | 199 | 93 | 0 | 238 | 436 | 35 | 233 | 5.25e-69 | 229 |
| Msa0135300 | MtrunA17_Chr2g0311581 | 51.256 | 199 | 97 | 0 | 238 | 436 | 34 | 232 | 8.46e-65 | 219 |
| Msa0135300 | MtrunA17_Chr7g0259201 | 44.318 | 176 | 98 | 0 | 238 | 413 | 5 | 180 | 9.85e-49 | 171 |
| Msa0135300 | MtrunA17_Chr5g0422971 | 33.673 | 196 | 116 | 4 | 247 | 435 | 18 | 206 | 5.11e-22 | 97.8 |
| Msa0135300 | MtrunA17_Chr5g0397381 | 32.653 | 196 | 118 | 4 | 247 | 435 | 18 | 206 | 8.83e-21 | 94.4 |
| Msa0135300 | MtrunA17_Chr7g0235101 | 24.242 | 198 | 137 | 2 | 238 | 434 | 14 | 199 | 2.24e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135300 | AT4G19600.1 | 50.754 | 199 | 98 | 0 | 238 | 436 | 34 | 232 | 6.66e-65 | 218 |
| Msa0135300 | AT5G45190.1 | 51.256 | 199 | 97 | 0 | 238 | 436 | 34 | 232 | 3.82e-64 | 216 |
| Msa0135300 | AT5G45190.2 | 47.619 | 210 | 99 | 1 | 238 | 436 | 34 | 243 | 9.61e-59 | 202 |
| Msa0135300 | AT4G19560.1 | 48.947 | 190 | 92 | 2 | 236 | 423 | 30 | 216 | 6.90e-54 | 186 |
| Msa0135300 | AT1G27630.4 | 44.724 | 199 | 109 | 1 | 238 | 436 | 35 | 232 | 1.47e-51 | 175 |
| Msa0135300 | AT1G27630.1 | 44.724 | 199 | 109 | 1 | 238 | 436 | 35 | 232 | 2.81e-51 | 176 |
| Msa0135300 | AT1G35440.1 | 39.216 | 204 | 113 | 3 | 233 | 433 | 3 | 198 | 2.72e-38 | 139 |
| Msa0135300 | AT5G45190.3 | 47.154 | 123 | 65 | 0 | 314 | 436 | 1 | 123 | 1.63e-29 | 120 |
| Msa0135300 | AT1G27630.6 | 41.216 | 148 | 86 | 1 | 289 | 436 | 1 | 147 | 1.85e-29 | 115 |
| Msa0135300 | AT1G27630.3 | 41.216 | 148 | 86 | 1 | 289 | 436 | 1 | 147 | 1.85e-29 | 115 |
| Msa0135300 | AT1G27630.5 | 41.216 | 148 | 86 | 1 | 289 | 436 | 1 | 147 | 1.85e-29 | 115 |
| Msa0135300 | AT1G27630.2 | 41.216 | 148 | 86 | 1 | 289 | 436 | 1 | 147 | 1.85e-29 | 115 |
| Msa0135300 | AT4G19560.2 | 41.880 | 117 | 63 | 2 | 309 | 423 | 31 | 144 | 1.90e-20 | 93.2 |
| Msa0135300 | AT2G26430.4 | 30.244 | 205 | 129 | 4 | 238 | 435 | 9 | 206 | 4.60e-20 | 90.5 |
| Msa0135300 | AT2G26430.1 | 30.457 | 197 | 123 | 4 | 246 | 435 | 17 | 206 | 1.11e-19 | 91.3 |
Find 113 sgRNAs with CRISPR-Local
Find 427 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGCATAATTGGCATAAT+TGG | 0.159054 | 1_3:+66936681 | None:intergenic |
| CAGGTCATCAGTGTTGTTTC+TGG | 0.168482 | 1_3:-66931190 | Msa0135300:three_prime_UTR |
| ACTTGGAATATGCGATTATT+TGG | 0.186755 | 1_3:-66931126 | Msa0135300:three_prime_UTR |
| GAATATCTGGCAAGAGTTTC+AGG | 0.206952 | 1_3:-66931809 | Msa0135300:three_prime_UTR |
| TGAGGCAACATTGGCATAAT+TGG | 0.250561 | 1_3:+66936672 | None:intergenic |
| TTCTTGGATCATTGGTTGTT+GGG | 0.251039 | 1_3:-66937047 | Msa0135300:CDS |
| CGGTGATTGGAATGGGAAAA+AGG | 0.258972 | 1_3:+66937458 | None:intergenic |
| ATTGGTTGTTGGGGAGATTA+TGG | 0.273877 | 1_3:-66937037 | Msa0135300:intron |
| CTCTTGCCAGATATTCTTAT+AGG | 0.278279 | 1_3:+66931816 | None:intergenic |
| ACATCTGTTCTGAACAAATT+AGG | 0.280827 | 1_3:-66935393 | Msa0135300:CDS |
| TGTATTTCAAGGTCAGAAAA+AGG | 0.284030 | 1_3:+66937511 | None:intergenic |
| TCAGTGTTGTTTCTGGAGTT+TGG | 0.286903 | 1_3:-66931183 | Msa0135300:three_prime_UTR |
| TCCTCTGATTATAATGGTTT+CGG | 0.288681 | 1_3:+66936782 | None:intergenic |
| CTTCTTGGATCATTGGTTGT+TGG | 0.311002 | 1_3:-66937048 | Msa0135300:CDS |
| GCAGGCTTCGTAGCTCTCTT+TGG | 0.313661 | 1_3:-66931914 | Msa0135300:intron |
| TATAATTCCTCTGATTATAA+TGG | 0.322076 | 1_3:+66936776 | None:intergenic |
| AGATGTCTCTCAGCAATTAA+TGG | 0.325317 | 1_3:-66931307 | Msa0135300:three_prime_UTR |
| TAGGTTTAGTTGGTAATTCA+TGG | 0.336744 | 1_3:+66937605 | None:intergenic |
| TTTAAAACTTGGGTTGGGTT+AGG | 0.342890 | 1_3:+66937586 | None:intergenic |
| TTGCTGCCTATAAGAATATC+TGG | 0.344912 | 1_3:-66931822 | Msa0135300:three_prime_UTR |
| CAGGCCAACTTTGGCTACTA+TGG | 0.349614 | 1_3:-66936736 | Msa0135300:CDS |
| GTAATTTAAACGGCGGTTAT+CGG | 0.353039 | 1_3:-66936843 | Msa0135300:CDS |
| ATCAGTGTTGTTTCCATCAT+AGG | 0.362225 | 1_3:+66936816 | None:intergenic |
| TGGCTGGAAGAGTGAACTTC+TGG | 0.371306 | 1_3:+66936602 | None:intergenic |
| ATATAGAGAAATCAGGCTTC+AGG | 0.384419 | 1_3:+66936497 | None:intergenic |
| AGGATAAGCTTGAAAATTGC+GGG | 0.386508 | 1_3:+66936555 | None:intergenic |
| AGGTCTTTCAAAGACCGTTT+TGG | 0.405949 | 1_3:-66935373 | Msa0135300:CDS |
| TTCTGGCTTTCTCCACGAAC+AGG | 0.416510 | 1_3:+66936619 | None:intergenic |
| GATAACCGCCGTTTAAATTA+CGG | 0.417471 | 1_3:+66936845 | None:intergenic |
| GAATATGCGATTATTTGGTT+TGG | 0.418814 | 1_3:-66931121 | Msa0135300:three_prime_UTR |
| CAGCTCCAGCAGCAATTTGA+TGG | 0.421370 | 1_3:+66931877 | None:intergenic |
| TGGGTTGGGTTAGGTTTAGT+TGG | 0.421537 | 1_3:+66937595 | None:intergenic |
| ATGATGGAAACAACACTGAT+AGG | 0.434683 | 1_3:-66936813 | Msa0135300:CDS |
| GAAGGGTAGCTTGTATTTCA+AGG | 0.439047 | 1_3:+66937500 | None:intergenic |
| ATCCACTTCGCTGCTTCCTC+AGG | 0.441902 | 1_3:-66937416 | Msa0135300:intron |
| TCATCCCTTGACATAAAGAT+AGG | 0.443536 | 1_3:+66936460 | None:intergenic |
| CAAGGTCCATGTTCAAAACT+TGG | 0.444793 | 1_3:+66931842 | None:intergenic |
| GCTTGAAAATTGCGGGATGA+AGG | 0.445664 | 1_3:+66936562 | None:intergenic |
| AAACCCCATCAAATTGCTGC+TGG | 0.448967 | 1_3:-66931882 | Msa0135300:CDS |
| AGATTGAGAAAGGGTGGGCT+GGG | 0.455946 | 1_3:-66937628 | Msa0135300:CDS |
| GAGATTGAGAAAGGGTGGGC+TGG | 0.457298 | 1_3:-66937629 | Msa0135300:CDS |
| TACAGGCCTCAAACTACCAT+TGG | 0.464526 | 1_3:-66936199 | Msa0135300:intron |
| ACAGATGTAAGAGGTGCATA+TGG | 0.464848 | 1_3:+66935408 | None:intergenic |
| TCATCAAATATAGAGAAATC+AGG | 0.467039 | 1_3:+66936490 | None:intergenic |
| AATTGATCGAGATCGGTGAT+TGG | 0.470340 | 1_3:+66937445 | None:intergenic |
| TTGTTCAGAACAGATGTAAG+AGG | 0.473356 | 1_3:+66935399 | None:intergenic |
| TTATAAGCGATGGATCTTGC+AGG | 0.473953 | 1_3:+66936535 | None:intergenic |
| GGTTATCGGTCCACCTATGA+TGG | 0.475605 | 1_3:-66936829 | Msa0135300:CDS |
| GGTGAATATGGCATTAAACT+TGG | 0.477866 | 1_3:-66935352 | Msa0135300:CDS |
| TATGACAATCAGGCCAACTT+TGG | 0.479227 | 1_3:-66936745 | Msa0135300:CDS |
| TAACAACTACTATGACAATC+AGG | 0.479493 | 1_3:-66936755 | Msa0135300:CDS |
| GTTTGAACAGTATCGTGAAC+GGG | 0.484464 | 1_3:-66935490 | Msa0135300:CDS |
| ATGGATTAATCTATCTAAAA+CGG | 0.485895 | 1_3:+66937543 | None:intergenic |
| AAATATTCAGCTCCTGTTCG+TGG | 0.486093 | 1_3:-66936631 | Msa0135300:CDS |
| TGTGCATTCCTTCAGAATCT+CGG | 0.487420 | 1_3:-66936364 | Msa0135300:CDS |
| ACATAAAATAGTTTGAAACT+TGG | 0.491419 | 1_3:-66931143 | Msa0135300:three_prime_UTR |
| AACTCTCCATCAAGAAAAGA+TGG | 0.491522 | 1_3:-66936427 | Msa0135300:CDS |
| CTTGAAAATTGCGGGATGAA+GGG | 0.492078 | 1_3:+66936563 | None:intergenic |
| TCTACTCTATACTGAAATCA+TGG | 0.493737 | 1_3:+66931251 | None:intergenic |
| GCAACCCCATCTGTTCTTCA+AGG | 0.496041 | 1_3:-66931787 | Msa0135300:intron |
| AGCTCCAGCAGCAATTTGAT+GGG | 0.496152 | 1_3:+66931878 | None:intergenic |
| TTGTTTGTGTAAGATTTCAC+TGG | 0.497574 | 1_3:+66935813 | None:intergenic |
| TCTTGGATCATTGGTTGTTG+GGG | 0.498543 | 1_3:-66937046 | Msa0135300:CDS |
| GTAAATGAAGAGATTGAGAA+AGG | 0.499044 | 1_3:-66937638 | None:intergenic |
| CAGAGATGATGAGGCAACAT+TGG | 0.501968 | 1_3:+66936663 | None:intergenic |
| TCGAGATCGGTGATTGGAAT+GGG | 0.507392 | 1_3:+66937451 | None:intergenic |
| ATCGAGATCGGTGATTGGAA+TGG | 0.508473 | 1_3:+66937450 | None:intergenic |
| GCTGAAGACCGTAATTTAAA+CGG | 0.509517 | 1_3:-66936853 | Msa0135300:CDS |
| TGGCATAGTCAACATTGCAT+TGG | 0.511087 | 1_3:+66936701 | None:intergenic |
| ATACTGTCATAGACTGTGGC+TGG | 0.517066 | 1_3:+66936586 | None:intergenic |
| ACAGGCCTCAAACTACCATT+GGG | 0.525531 | 1_3:-66936198 | Msa0135300:intron |
| GCATTAAACTTGGTCAGTGA+AGG | 0.526256 | 1_3:-66935342 | Msa0135300:CDS |
| GTTCTCAATACGCTATTCAA+AGG | 0.527521 | 1_3:+66935838 | None:intergenic |
| TCCTTCAGAATCTCGGAACA+AGG | 0.531055 | 1_3:-66936357 | Msa0135300:CDS |
| CAGGATAAGCTTGAAAATTG+CGG | 0.532175 | 1_3:+66936554 | None:intergenic |
| TAATGCCATATTCACCAAAA+CGG | 0.532860 | 1_3:+66935359 | None:intergenic |
| TTCTCAATACGCTATTCAAA+GGG | 0.535468 | 1_3:+66935839 | None:intergenic |
| ATAAGCCTATCTTTATGTCA+AGG | 0.539467 | 1_3:-66936465 | Msa0135300:CDS |
| TCTCTTCTTCAGAGATGATG+AGG | 0.541037 | 1_3:+66936654 | None:intergenic |
| ATGAAGAGATTGAGAAAGGG+TGG | 0.547740 | 1_3:-66937634 | Msa0135300:CDS |
| CAACAACCAATGATCCAAGA+AGG | 0.565001 | 1_3:+66937049 | None:intergenic |
| GCCACCATAGTAGCCAAAGT+TGG | 0.567755 | 1_3:+66936732 | None:intergenic |
| ATGTTCAAAACTTGGCAGCA+AGG | 0.575066 | 1_3:+66931850 | None:intergenic |
| AGTGTACCTTGAAGAACAGA+TGG | 0.575995 | 1_3:+66931781 | None:intergenic |
| AACTACCATTGGGACATCCA+TGG | 0.577912 | 1_3:-66936188 | Msa0135300:CDS |
| AGTGTTGTTTCCATCATAGG+TGG | 0.578351 | 1_3:+66936819 | None:intergenic |
| GCCGAAACCATTATAATCAG+AGG | 0.583182 | 1_3:-66936783 | Msa0135300:CDS |
| TTGAGAAGTAGAATTACTAC+AGG | 0.585877 | 1_3:-66931209 | Msa0135300:three_prime_UTR |
| TAAGCCTATCTTTATGTCAA+GGG | 0.590422 | 1_3:-66936464 | Msa0135300:CDS |
| GCTCCAGCAGCAATTTGATG+GGG | 0.593348 | 1_3:+66931879 | None:intergenic |
| AATACGCTATTCAAAGGGCA+TGG | 0.596502 | 1_3:+66935844 | None:intergenic |
| GCCAACTTTGGCTACTATGG+TGG | 0.598804 | 1_3:-66936733 | Msa0135300:CDS |
| GATGTCCCAATGGTAGTTTG+AGG | 0.599085 | 1_3:+66936193 | None:intergenic |
| CATTAAACTTGGTCAGTGAA+GGG | 0.599530 | 1_3:-66935341 | Msa0135300:intron |
| ATCAGGCTTCAGGCTAGCTG+AGG | 0.599685 | 1_3:+66936507 | None:intergenic |
| GTATCGTGAACGGGTGCTTG+AGG | 0.601601 | 1_3:-66935481 | Msa0135300:CDS |
| TAAATGAAGAGATTGAGAAA+GGG | 0.601858 | 1_3:-66937637 | Msa0135300:CDS |
| GGTTTGAACAGTATCGTGAA+CGG | 0.606171 | 1_3:-66935491 | Msa0135300:CDS |
| TGAGGTAGAGTTATAAGCGA+TGG | 0.612383 | 1_3:+66936525 | None:intergenic |
| AACAACCAATGATCCAAGAA+GGG | 0.612992 | 1_3:+66937050 | None:intergenic |
| GTGTACCTTGAAGAACAGAT+GGG | 0.613797 | 1_3:+66931782 | None:intergenic |
| TGAAGAGATTGAGAAAGGGT+GGG | 0.618985 | 1_3:-66937633 | Msa0135300:CDS |
| CAGAACCATGGATGTCCCAA+TGG | 0.621402 | 1_3:+66936183 | None:intergenic |
| TCTGATGAATTGATCGAGAT+CGG | 0.622143 | 1_3:+66937438 | None:intergenic |
| AAAACGGTGGCACAGAACCA+TGG | 0.624859 | 1_3:+66936171 | None:intergenic |
| AGATATTCTTATAGGCAGCA+AGG | 0.627605 | 1_3:+66931824 | None:intergenic |
| TACCTGAGGAAGCAGCGAAG+TGG | 0.641339 | 1_3:+66937414 | None:intergenic |
| GCCTTGTTCCGAGATTCTGA+AGG | 0.646755 | 1_3:+66936356 | None:intergenic |
| TGCTTCATGAAACACACTTG+CGG | 0.665068 | 1_3:-66936396 | Msa0135300:CDS |
| ACTCACAACAGGAAACCAGT+AGG | 0.689885 | 1_3:+66935774 | None:intergenic |
| GAAGACCGTAATTTAAACGG+CGG | 0.704636 | 1_3:-66936850 | Msa0135300:CDS |
| TGTACCTTGAAGAACAGATG+GGG | 0.723899 | 1_3:+66931783 | None:intergenic |
| AGGGATACTGTCATAGACTG+TGG | 0.766838 | 1_3:+66936582 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTCAATTAAGAAAATTT+TGG | + | chr1_3:66931374-66931393 | None:intergenic | 10.0% |
| !!! | AGTTCTTTTTAAATATTAAT+TGG | - | chr1_3:66931577-66931596 | Msa0135300:intron | 10.0% |
| !!! | TATGAATAACATATTTTATT+AGG | - | chr1_3:66937031-66937050 | Msa0135300:intron | 10.0% |
| !!! | AATTGTATGTATAATTTTGT+TGG | - | chr1_3:66931764-66931783 | Msa0135300:intron | 15.0% |
| !!! | ATTGTATGTATAATTTTGTT+GGG | - | chr1_3:66931765-66931784 | Msa0135300:intron | 15.0% |
| !! | AAAAAAACAACTATTTAAAC+AGG | + | chr1_3:66934604-66934623 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTAACATTACT+AGG | - | chr1_3:66934685-66934704 | Msa0135300:intron | 15.0% |
| !!! | TTTAACTTTTAACATTACTA+GGG | - | chr1_3:66934686-66934705 | Msa0135300:intron | 15.0% |
| !!! | ATTTGTTTTTCGAATAAAAA+AGG | - | chr1_3:66937096-66937115 | Msa0135300:intron | 15.0% |
| !!! | TTTGTTTTTCGAATAAAAAA+GGG | - | chr1_3:66937097-66937116 | Msa0135300:intron | 15.0% |
| !!! | ATGGATTAATCTATCTAAAA+CGG | + | chr1_3:66931146-66931165 | None:intergenic | 20.0% |
| !! | TTTCTATATGAATTTGAAAG+TGG | + | chr1_3:66931397-66931416 | None:intergenic | 20.0% |
| !!! | TCTATCTGTTTTTTTTTTCA+TGG | - | chr1_3:66931431-66931450 | Msa0135300:intron | 20.0% |
| !! | ATCGTAAACATTGTATATTT+AGG | - | chr1_3:66931522-66931541 | Msa0135300:intron | 20.0% |
| !!! | TGTTTTCATTAACATTATGT+TGG | - | chr1_3:66931722-66931741 | Msa0135300:intron | 20.0% |
| !! | TATAATTCCTCTGATTATAA+TGG | + | chr1_3:66931913-66931932 | None:intergenic | 20.0% |
| !! | TATTTCAATTAACTTAAGAG+CGG | - | chr1_3:66932734-66932753 | Msa0135300:intron | 20.0% |
| !!! | TAATAGAGGTATAAGAATTA+TGG | + | chr1_3:66933103-66933122 | None:intergenic | 20.0% |
| !! | AATTCTTATACCTCTATTAT+CGG | - | chr1_3:66933104-66933123 | Msa0135300:intron | 20.0% |
| !!! | ATTATTTTGGACCAAAATTT+TGG | + | chr1_3:66933674-66933693 | None:intergenic | 20.0% |
| !! | TTTAACAGAAAATATGTGTT+GGG | + | chr1_3:66933958-66933977 | None:intergenic | 20.0% |
| !! | AACAGTATGAATTTCAAATA+TGG | - | chr1_3:66934054-66934073 | Msa0135300:intron | 20.0% |
| !! | TTTGAAAGGGAAAAAAATAA+AGG | + | chr1_3:66934548-66934567 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTCCCTTTCAAA+TGG | - | chr1_3:66934548-66934567 | Msa0135300:intron | 20.0% |
| !! | ATTAACAAAACCATTTGAAA+GGG | + | chr1_3:66934561-66934580 | None:intergenic | 20.0% |
| !!! | TTTCAACATCATTCATATTT+TGG | + | chr1_3:66934850-66934869 | None:intergenic | 20.0% |
| !! | AATACCTATATTTAACCTAA+TGG | + | chr1_3:66934883-66934902 | None:intergenic | 20.0% |
| !!! | ATATCGTTATTTCTTTGTTT+TGG | - | chr1_3:66935106-66935125 | Msa0135300:intron | 20.0% |
| !! | AATACTCAAAATGTACTTAA+AGG | - | chr1_3:66935483-66935502 | Msa0135300:CDS | 20.0% |
| !!! | GATAAATGAATTTTGTAGTT+TGG | - | chr1_3:66937001-66937020 | Msa0135300:intron | 20.0% |
| !! | TATAGTAATCAAAAGAAATC+AGG | + | chr1_3:66937142-66937161 | None:intergenic | 20.0% |
| !!! | ACATAAAATAGTTTGAAACT+TGG | - | chr1_3:66937543-66937562 | Msa0135300:CDS | 20.0% |
| !!! | GTTAATTTTGTTGTTTTTCT+TGG | - | chr1_3:66937590-66937609 | Msa0135300:CDS | 20.0% |
| !!! | ACCAACTCTTTTTAAAACTT+GGG | + | chr1_3:66931113-66931132 | None:intergenic | 25.0% |
| !!! | TACCAACTCTTTTTAAAACT+TGG | + | chr1_3:66931114-66931133 | None:intergenic | 25.0% |
| !!! | ATTAGGGTTTTGAAAAAGAA+GGG | + | chr1_3:66931206-66931225 | None:intergenic | 25.0% |
| !!! | AATTAGGGTTTTGAAAAAGA+AGG | + | chr1_3:66931207-66931226 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCATGGATCGTTA+TGG | - | chr1_3:66931441-66931460 | Msa0135300:intron | 25.0% |
| ! | GTAAACATTGTATATTTAGG+TGG | - | chr1_3:66931525-66931544 | Msa0135300:intron | 25.0% |
| ! | TCATCAAATATAGAGAAATC+AGG | + | chr1_3:66932199-66932218 | None:intergenic | 25.0% |
| !! | TCTTATATGTTTGTGTTTTG+TGG | - | chr1_3:66932420-66932439 | Msa0135300:intron | 25.0% |
| !! | AAAGCATGAATTTAGAACTA+GGG | + | chr1_3:66932595-66932614 | None:intergenic | 25.0% |
| !! | TAAAGCATGAATTTAGAACT+AGG | + | chr1_3:66932596-66932615 | None:intergenic | 25.0% |
| !! | ACAAAAGAGGAAAGAATTTT+GGG | + | chr1_3:66932951-66932970 | None:intergenic | 25.0% |
| !! | TACAAAAGAGGAAAGAATTT+TGG | + | chr1_3:66932952-66932971 | None:intergenic | 25.0% |
| ! | AAATAAATCAGCATTTCTCT+TGG | - | chr1_3:66933071-66933090 | Msa0135300:intron | 25.0% |
| !! | ACTACTCTAAATTTTGAACT+CGG | - | chr1_3:66933245-66933264 | Msa0135300:intron | 25.0% |
| !! | ACTGTGAATCAACATTATTT+TGG | + | chr1_3:66933687-66933706 | None:intergenic | 25.0% |
| !!! | AATATGACCCTATTTTTGTT+TGG | - | chr1_3:66933911-66933930 | Msa0135300:intron | 25.0% |
| !!! | ATATGACCCTATTTTTGTTT+GGG | - | chr1_3:66933912-66933931 | Msa0135300:intron | 25.0% |
| ! | TTAACAGAAAATATGTGTTG+GGG | + | chr1_3:66933957-66933976 | None:intergenic | 25.0% |
| ! | GTTTAACAGAAAATATGTGT+TGG | + | chr1_3:66933959-66933978 | None:intergenic | 25.0% |
| ! | ATGAATTTCAAATATGGTTC+CGG | - | chr1_3:66934060-66934079 | Msa0135300:intron | 25.0% |
| ! | ATTTGACAACAATAGTATGA+AGG | - | chr1_3:66934330-66934349 | Msa0135300:intron | 25.0% |
| ! | AACAATAGTATGAAGGAAAA+TGG | - | chr1_3:66934337-66934356 | Msa0135300:intron | 25.0% |
| ! | ACAATAGTATGAAGGAAAAT+GGG | - | chr1_3:66934338-66934357 | Msa0135300:intron | 25.0% |
| ! | CATTAACAAAACCATTTGAA+AGG | + | chr1_3:66934562-66934581 | None:intergenic | 25.0% |
| ! | AAAACAACTATTTAAACAGG+TGG | + | chr1_3:66934601-66934620 | None:intergenic | 25.0% |
| ! | TAAAACTTTGATTCAAACAG+AGG | + | chr1_3:66934757-66934776 | None:intergenic | 25.0% |
| !! | TCATACATCATTCACAATTT+TGG | + | chr1_3:66934781-66934800 | None:intergenic | 25.0% |
| ! | AATGCCACTAAGTTAAATAT+AGG | - | chr1_3:66934809-66934828 | Msa0135300:intron | 25.0% |
| !! | GTTACCTATATTTAACTTAG+TGG | + | chr1_3:66934816-66934835 | None:intergenic | 25.0% |
| !!! | TCATATTTTGGCTAAAACTT+CGG | + | chr1_3:66934838-66934857 | None:intergenic | 25.0% |
| ! | AATGCCATTAGGTTAAATAT+AGG | - | chr1_3:66934876-66934895 | Msa0135300:intron | 25.0% |
| ! | TCAATCAATTATTTGTGTCT+TGG | - | chr1_3:66934947-66934966 | Msa0135300:intron | 25.0% |
| ! | TGATCTTATCCTTAATGTTA+TGG | - | chr1_3:66934991-66935010 | Msa0135300:intron | 25.0% |
| ! | GAACAAATTTCAAATCTAAG+AGG | + | chr1_3:66935028-66935047 | None:intergenic | 25.0% |
| !! | TCTGTTTTCAAAAGAAAATC+TGG | - | chr1_3:66935075-66935094 | Msa0135300:intron | 25.0% |
| ! | TAGAAAGAAAAAAAAAACCC+AGG | - | chr1_3:66935175-66935194 | Msa0135300:intron | 25.0% |
| !! | ACTCATTTGAAGTATAATAC+AGG | + | chr1_3:66935347-66935366 | None:intergenic | 25.0% |
| ! | TCAACATGAAATATCAATAG+CGG | - | chr1_3:66935372-66935391 | Msa0135300:CDS | 25.0% |
| ! | ATAAATCCAATAGAAGAGAA+GGG | + | chr1_3:66935657-66935676 | None:intergenic | 25.0% |
| ! | AATAAATCCAATAGAAGAGA+AGG | + | chr1_3:66935658-66935677 | None:intergenic | 25.0% |
| ! | AATGATATATGAAAGACACA+AGG | + | chr1_3:66936036-66936055 | None:intergenic | 25.0% |
| !! | GAGAATTTTTACTCAAATGT+TGG | + | chr1_3:66936063-66936082 | None:intergenic | 25.0% |
| !! | ATTTTCATTGCATAAGTTTC+TGG | - | chr1_3:66936359-66936378 | Msa0135300:CDS | 25.0% |
| !! | GCTACTTGATAATTATAACA+AGG | + | chr1_3:66936941-66936960 | None:intergenic | 25.0% |
| !! | AAAAAAGGGATCTTTATTTG+AGG | - | chr1_3:66937111-66937130 | Msa0135300:intron | 25.0% |
| !! | TCCATTTGAAACTTAGAAAT+TGG | - | chr1_3:66937190-66937209 | Msa0135300:intron | 25.0% |
| ! | ACCAATTTCTAAGTTTCAAA+TGG | + | chr1_3:66937194-66937213 | None:intergenic | 25.0% |
| !! | TAGGTTTAGTTGGTAATTCA+TGG | + | chr1_3:66931084-66931103 | None:intergenic | 30.0% |
| !!! | CTCTTTTTAAAACTTGGGTT+GGG | + | chr1_3:66931108-66931127 | None:intergenic | 30.0% |
| !!! | ACTCTTTTTAAAACTTGGGT+TGG | + | chr1_3:66931109-66931128 | None:intergenic | 30.0% |
| !!! | ACCCAAGTTTTAAAAAGAGT+TGG | - | chr1_3:66931109-66931128 | Msa0135300:three_prime_UTR | 30.0% |
| CAGAAAAAGGAAAGTAAACA+TGG | + | chr1_3:66931165-66931184 | None:intergenic | 30.0% | |
| TGTATTTCAAGGTCAGAAAA+AGG | + | chr1_3:66931178-66931197 | None:intergenic | 30.0% | |
| !! | CAAATTGATGATGAGATGAT+GGG | + | chr1_3:66931313-66931332 | None:intergenic | 30.0% |
| !! | ACAAATTGATGATGAGATGA+TGG | + | chr1_3:66931314-66931333 | None:intergenic | 30.0% |
| !! | TGAAATTCTATGCTTTTTGC+TGG | - | chr1_3:66931486-66931505 | Msa0135300:intron | 30.0% |
| !! | ATGCTTTTTGCTGGTTAATT+TGG | - | chr1_3:66931495-66931514 | Msa0135300:intron | 30.0% |
| !! | TGCTTTTTGCTGGTTAATTT+GGG | - | chr1_3:66931496-66931515 | Msa0135300:intron | 30.0% |
| TCCTCTGATTATAATGGTTT+CGG | + | chr1_3:66931907-66931926 | None:intergenic | 30.0% | |
| TAACAACTACTATGACAATC+AGG | - | chr1_3:66931931-66931950 | Msa0135300:intron | 30.0% | |
| ATTGGCATAATTGGCATAAT+TGG | + | chr1_3:66932008-66932027 | None:intergenic | 30.0% | |
| ATAAGCCTATCTTTATGTCA+AGG | - | chr1_3:66932221-66932240 | Msa0135300:intron | 30.0% | |
| TAAGCCTATCTTTATGTCAA+GGG | - | chr1_3:66932222-66932241 | Msa0135300:intron | 30.0% | |
| ! | TCAATACCATCTTTTCTTGA+TGG | + | chr1_3:66932268-66932287 | None:intergenic | 30.0% |
| ATCGTATCATGTTTGTTTAC+AGG | - | chr1_3:66932470-66932489 | Msa0135300:intron | 30.0% | |
| AAAAACTCACAAATCTGTCA+TGG | + | chr1_3:66932564-66932583 | None:intergenic | 30.0% | |
| TTTGTTGCTCATATCTATGA+AGG | - | chr1_3:66932693-66932712 | Msa0135300:intron | 30.0% | |
| TTCTCAATACGCTATTCAAA+GGG | + | chr1_3:66932850-66932869 | None:intergenic | 30.0% | |
| TTGTTTGTGTAAGATTTCAC+TGG | + | chr1_3:66932876-66932895 | None:intergenic | 30.0% | |
| ! | GTTTGAAATATACTCACAAC+AGG | + | chr1_3:66932926-66932945 | None:intergenic | 30.0% |
| ! | ACATCTGTTCTGAACAAATT+AGG | - | chr1_3:66933293-66933312 | Msa0135300:intron | 30.0% |
| TAATGCCATATTCACCAAAA+CGG | + | chr1_3:66933330-66933349 | None:intergenic | 30.0% | |
| TGTTTATACCATTTATCTCG+AGG | - | chr1_3:66933419-66933438 | Msa0135300:intron | 30.0% | |
| GTTTATACCATTTATCTCGA+GGG | - | chr1_3:66933420-66933439 | Msa0135300:intron | 30.0% | |
| ACATACAAGTTTCATTTGAG+TGG | + | chr1_3:66933457-66933476 | None:intergenic | 30.0% | |
| TGAATGAAAAAACCTAGTCT+AGG | - | chr1_3:66933552-66933571 | Msa0135300:intron | 30.0% | |
| CAAGAAATTATCATGTCTTG+AGG | - | chr1_3:66933607-66933626 | Msa0135300:intron | 30.0% | |
| ! | TTTTGGACCAAAATTTTGGA+GGG | + | chr1_3:66933670-66933689 | None:intergenic | 30.0% |
| ! | ATTTTGGACCAAAATTTTGG+AGG | + | chr1_3:66933671-66933690 | None:intergenic | 30.0% |
| AATAACTACACAGAGAAGTT+GGG | + | chr1_3:66933722-66933741 | None:intergenic | 30.0% | |
| AAATAACTACACAGAGAAGT+TGG | + | chr1_3:66933723-66933742 | None:intergenic | 30.0% | |
| TCTGTGTAGTTATTTGTCAT+GGG | - | chr1_3:66933728-66933747 | Msa0135300:intron | 30.0% | |
| !! | TCATGGGATATTGATTGTTT+TGG | - | chr1_3:66933744-66933763 | Msa0135300:intron | 30.0% |
| AGTTGAATTGCTGATGTTAA+TGG | - | chr1_3:66933874-66933893 | Msa0135300:intron | 30.0% | |
| CAAAAATAGGGTCATATTCA+TGG | + | chr1_3:66933909-66933928 | None:intergenic | 30.0% | |
| GTTTAGCCCAAACAAAAATA+GGG | + | chr1_3:66933921-66933940 | None:intergenic | 30.0% | |
| ! | TCATACTGTTAGCTCATTTT+TGG | + | chr1_3:66934044-66934063 | None:intergenic | 30.0% |
| ! | TTCACAACATAAATTGACTC+TGG | + | chr1_3:66934150-66934169 | None:intergenic | 30.0% |
| CAATGCTTTGTGCTAAATAA+TGG | - | chr1_3:66934253-66934272 | Msa0135300:intron | 30.0% | |
| TTGAAGGAAACTTTCTACTT+TGG | - | chr1_3:66934454-66934473 | Msa0135300:intron | 30.0% | |
| TTGATGAACAAAATTGTTCC+TGG | - | chr1_3:66934490-66934509 | Msa0135300:intron | 30.0% | |
| ATTGTTCCTGGACAAAAAAT+TGG | - | chr1_3:66934502-66934521 | Msa0135300:intron | 30.0% | |
| !!! | ATCAAACCAATTTTTTGTCC+AGG | + | chr1_3:66934511-66934530 | None:intergenic | 30.0% |
| CATACTCGATTTACTTTCAT+TGG | - | chr1_3:66934633-66934652 | Msa0135300:intron | 30.0% | |
| ! | TCTTGATAGTTGGATATTGT+TGG | - | chr1_3:66934715-66934734 | Msa0135300:intron | 30.0% |
| ACAGAGGATTATCAAAAACA+TGG | + | chr1_3:66934741-66934760 | None:intergenic | 30.0% | |
| ! | TGAAAATCTGAAATGCCATT+AGG | - | chr1_3:66934865-66934884 | Msa0135300:intron | 30.0% |
| ! | TCCTTAATGTTATGGTTTGT+AGG | - | chr1_3:66934999-66935018 | Msa0135300:intron | 30.0% |
| TACAACATTTATGGACACAA+TGG | + | chr1_3:66935226-66935245 | None:intergenic | 30.0% | |
| TAAACCAGCTACAACATTTA+TGG | + | chr1_3:66935235-66935254 | None:intergenic | 30.0% | |
| AATACAAATGCATAACAGTG+TGG | + | chr1_3:66935403-66935422 | None:intergenic | 30.0% | |
| CTGTTATGCATTTGTATTGA+AGG | - | chr1_3:66935405-66935424 | Msa0135300:CDS | 30.0% | |
| TTTGAGTATTTGAGCTCATA+AGG | + | chr1_3:66935473-66935492 | None:intergenic | 30.0% | |
| TACTTAAAGGTCTTCTTTGT+TGG | - | chr1_3:66935496-66935515 | Msa0135300:CDS | 30.0% | |
| CTTCTTTACTCTCTTATTCT+GGG | - | chr1_3:66935538-66935557 | Msa0135300:intron | 30.0% | |
| GCTAAAGCACAAGAAAATTA+TGG | + | chr1_3:66935739-66935758 | None:intergenic | 30.0% | |
| ! | TGCTTTAGCATTGAATGATA+AGG | - | chr1_3:66935750-66935769 | Msa0135300:intron | 30.0% |
| ! | TTTAGCATTGAATGATAAGG+AGG | - | chr1_3:66935753-66935772 | Msa0135300:intron | 30.0% |
| ! | TTAGCATTGAATGATAAGGA+GGG | - | chr1_3:66935754-66935773 | Msa0135300:intron | 30.0% |
| ACTGTTGAACCTAATAAAAG+TGG | - | chr1_3:66935955-66935974 | Msa0135300:intron | 30.0% | |
| TTGAACCTAATAAAAGTGGT+AGG | - | chr1_3:66935959-66935978 | Msa0135300:intron | 30.0% | |
| TGAACCTAATAAAAGTGGTA+GGG | - | chr1_3:66935960-66935979 | Msa0135300:intron | 30.0% | |
| ! | TTGCTTCAGTATTTTCCTTT+TGG | - | chr1_3:66936125-66936144 | Msa0135300:intron | 30.0% |
| ! | TGCTTCAGTATTTTCCTTTT+GGG | - | chr1_3:66936126-66936145 | Msa0135300:intron | 30.0% |
| TTAAATTGTCTTTGCCCAAA+AGG | + | chr1_3:66936143-66936162 | None:intergenic | 30.0% | |
| ! | CTCTTGTCAATATTTTGTCT+TGG | + | chr1_3:66936270-66936289 | None:intergenic | 30.0% |
| CAAGACAAAATATTGACAAG+AGG | - | chr1_3:66936268-66936287 | Msa0135300:intron | 30.0% | |
| ! | CAAATGAATTTTCGAAGCTA+AGG | + | chr1_3:66936303-66936322 | None:intergenic | 30.0% |
| GCTTCGAAAATTCATTTGTT+TGG | - | chr1_3:66936305-66936324 | Msa0135300:intron | 30.0% | |
| ! | TATAAGAAAGCATGCATTGA+GGG | + | chr1_3:66936340-66936359 | None:intergenic | 30.0% |
| ! | ATATAAGAAAGCATGCATTG+AGG | + | chr1_3:66936341-66936360 | None:intergenic | 30.0% |
| GTAAGATAGTGCTAATAGTT+TGG | - | chr1_3:66936442-66936461 | Msa0135300:CDS | 30.0% | |
| !! | ATTATAGTTGGTAAGGAACA+TGG | - | chr1_3:66936524-66936543 | Msa0135300:CDS | 30.0% |
| AAAAAAAATCAGCTTCAGCA+AGG | + | chr1_3:66936751-66936770 | None:intergenic | 30.0% | |
| !!! | TGAAGCTGATTTTTTTTTGC+AGG | - | chr1_3:66936754-66936773 | Msa0135300:CDS | 30.0% |
| CTATGGTATAACTTCAAACT+AGG | + | chr1_3:66937217-66937236 | None:intergenic | 30.0% | |
| TTGAAGTTATACCATAGCTT+TGG | - | chr1_3:66937220-66937239 | Msa0135300:intron | 30.0% | |
| TCTACTCTATACTGAAATCA+TGG | + | chr1_3:66937438-66937457 | None:intergenic | 30.0% | |
| TTGAGAAGTAGAATTACTAC+AGG | - | chr1_3:66937477-66937496 | Msa0135300:CDS | 30.0% | |
| ! | AACTATTTTATGTGCATGCA+CGG | + | chr1_3:66937536-66937555 | None:intergenic | 30.0% |
| ACTTGGAATATGCGATTATT+TGG | - | chr1_3:66937560-66937579 | Msa0135300:CDS | 30.0% | |
| GAATATGCGATTATTTGGTT+TGG | - | chr1_3:66937565-66937584 | Msa0135300:CDS | 30.0% | |
| !! | TTTAAAACTTGGGTTGGGTT+AGG | + | chr1_3:66931103-66931122 | None:intergenic | 35.0% |
| GAATGGGAAAAAGGGAATTA+GGG | + | chr1_3:66931222-66931241 | None:intergenic | 35.0% | |
| TCTGATGAATTGATCGAGAT+CGG | + | chr1_3:66931251-66931270 | None:intergenic | 35.0% | |
| TTTGTAAGATTGCATACCTG+AGG | + | chr1_3:66931289-66931308 | None:intergenic | 35.0% | |
| !! | GCTTTTTGCTGGTTAATTTG+GGG | - | chr1_3:66931497-66931516 | Msa0135300:intron | 35.0% |
| !! | CTTTTTGCTGGTTAATTTGG+GGG | - | chr1_3:66931498-66931517 | Msa0135300:intron | 35.0% |
| !!! | AACAGTGTTTTTTCCCTTCT+TGG | - | chr1_3:66931623-66931642 | Msa0135300:intron | 35.0% |
| ! | TTTTTCCCTTCTTGGATCAT+TGG | - | chr1_3:66931631-66931650 | Msa0135300:intron | 35.0% |
| AACAACCAATGATCCAAGAA+GGG | + | chr1_3:66931639-66931658 | None:intergenic | 35.0% | |
| ! | TTCTTGGATCATTGGTTGTT+GGG | - | chr1_3:66931639-66931658 | Msa0135300:intron | 35.0% |
| ! | GTTGGGTTATATGATTTTGC+AGG | - | chr1_3:66931782-66931801 | Msa0135300:intron | 35.0% |
| ! | CAGGAGTTATGTCTTTTGTT+CGG | - | chr1_3:66931801-66931820 | Msa0135300:three_prime_UTR | 35.0% |
| GCTGAAGACCGTAATTTAAA+CGG | - | chr1_3:66931833-66931852 | Msa0135300:three_prime_UTR | 35.0% | |
| GATAACCGCCGTTTAAATTA+CGG | + | chr1_3:66931844-66931863 | None:intergenic | 35.0% | |
| GTAATTTAAACGGCGGTTAT+CGG | - | chr1_3:66931843-66931862 | Msa0135300:exon | 35.0% | |
| !! | ATCAGTGTTGTTTCCATCAT+AGG | + | chr1_3:66931873-66931892 | None:intergenic | 35.0% |
| ! | ATGATGGAAACAACACTGAT+AGG | - | chr1_3:66931873-66931892 | Msa0135300:CDS | 35.0% |
| AGGATAAGCTTGAAAATTGC+GGG | + | chr1_3:66932134-66932153 | None:intergenic | 35.0% | |
| CAGGATAAGCTTGAAAATTG+CGG | + | chr1_3:66932135-66932154 | None:intergenic | 35.0% | |
| ATATAGAGAAATCAGGCTTC+AGG | + | chr1_3:66932192-66932211 | None:intergenic | 35.0% | |
| TCATCCCTTGACATAAAGAT+AGG | + | chr1_3:66932229-66932248 | None:intergenic | 35.0% | |
| AACTCTCCATCAAGAAAAGA+TGG | - | chr1_3:66932259-66932278 | Msa0135300:intron | 35.0% | |
| ! | GTCACATGGATAGTCTTTTT+AGG | - | chr1_3:66932378-66932397 | Msa0135300:intron | 35.0% |
| GTTCTCAATACGCTATTCAA+AGG | + | chr1_3:66932851-66932870 | None:intergenic | 35.0% | |
| ! | ATTTTGCTTTCTTGTCCTAC+TGG | - | chr1_3:66932897-66932916 | Msa0135300:intron | 35.0% |
| TGACAAGCATAGTACAAAAG+AGG | + | chr1_3:66932964-66932983 | None:intergenic | 35.0% | |
| GATTCAGCATACATAGTCAT+GGG | + | chr1_3:66933001-66933020 | None:intergenic | 35.0% | |
| TGATTCAGCATACATAGTCA+TGG | + | chr1_3:66933002-66933021 | None:intergenic | 35.0% | |
| TGACTATGTATGCTGAATCA+CGG | - | chr1_3:66933002-66933021 | Msa0135300:intron | 35.0% | |
| AATCACGGTAAAGTTCAAGA+CGG | - | chr1_3:66933017-66933036 | Msa0135300:intron | 35.0% | |
| !!! | ACTTGATTTGTGTTTTCCAC+AGG | - | chr1_3:66933169-66933188 | Msa0135300:intron | 35.0% |
| ! | ATTTGTGTTTTCCACAGGAT+TGG | - | chr1_3:66933174-66933193 | Msa0135300:intron | 35.0% |
| TTGTTCAGAACAGATGTAAG+AGG | + | chr1_3:66933290-66933309 | None:intergenic | 35.0% | |
| !! | AAAGACCGTTTTGGTGAATA+TGG | - | chr1_3:66933322-66933341 | Msa0135300:intron | 35.0% |
| GGTGAATATGGCATTAAACT+TGG | - | chr1_3:66933334-66933353 | Msa0135300:intron | 35.0% | |
| CATTAAACTTGGTCAGTGAA+GGG | - | chr1_3:66933345-66933364 | Msa0135300:intron | 35.0% | |
| ! | AGTTTTACCCTCGAGATAAA+TGG | + | chr1_3:66933430-66933449 | None:intergenic | 35.0% |
| ! | TCTTCAGGTATCCCTTTTAT+TGG | - | chr1_3:66933498-66933517 | Msa0135300:intron | 35.0% |
| GCTAGTCAGAACCAATAAAA+GGG | + | chr1_3:66933512-66933531 | None:intergenic | 35.0% | |
| AATTATCATGTCTTGAGGTG+TGG | - | chr1_3:66933612-66933631 | Msa0135300:intron | 35.0% | |
| CTCTGTGTAGTTATTTGTCA+TGG | - | chr1_3:66933727-66933746 | Msa0135300:intron | 35.0% | |
| TTTGGCATGCATATAATTGC+AGG | - | chr1_3:66933762-66933781 | Msa0135300:intron | 35.0% | |
| TCTTCACAAGATTATCATGC+TGG | - | chr1_3:66933786-66933805 | Msa0135300:intron | 35.0% | |
| GCTTGTATGATATTCTTAGC+TGG | - | chr1_3:66933808-66933827 | Msa0135300:intron | 35.0% | |
| TGTATGATATTCTTAGCTGG+CGG | - | chr1_3:66933811-66933830 | Msa0135300:intron | 35.0% | |
| GGTTTAGCCCAAACAAAAAT+AGG | + | chr1_3:66933922-66933941 | None:intergenic | 35.0% | |
| AAAATATGTGTTGGGGCATA+GGG | + | chr1_3:66933950-66933969 | None:intergenic | 35.0% | |
| CACAAACAACAACACAATGA+GGG | + | chr1_3:66933981-66934000 | None:intergenic | 35.0% | |
| !! | GTTGTTGTTTGTGCTGATTA+CGG | - | chr1_3:66933988-66934007 | Msa0135300:intron | 35.0% |
| TGAATAACCACAACTCGTTT+AGG | + | chr1_3:66934097-66934116 | None:intergenic | 35.0% | |
| ! | ATAAATTGACTCTGGTGGAA+AGG | + | chr1_3:66934142-66934161 | None:intergenic | 35.0% |
| ! | ACAACATAAATTGACTCTGG+TGG | + | chr1_3:66934147-66934166 | None:intergenic | 35.0% |
| !! | CACAAAGCATTGTCAAATAG+GGG | + | chr1_3:66934245-66934264 | None:intergenic | 35.0% |
| !! | GCACAAAGCATTGTCAAATA+GGG | + | chr1_3:66934246-66934265 | None:intergenic | 35.0% |
| !! | AGCACAAAGCATTGTCAAAT+AGG | + | chr1_3:66934247-66934266 | None:intergenic | 35.0% |
| TGCTAAATAATGGTGTGTTG+CGG | - | chr1_3:66934263-66934282 | Msa0135300:intron | 35.0% | |
| ! | CAAATAGTAGTGCTATTGTG+TGG | + | chr1_3:66934315-66934334 | None:intergenic | 35.0% |
| ! | ATGGGTTTTTATTCTGCTTC+TGG | - | chr1_3:66934356-66934375 | Msa0135300:intron | 35.0% |
| ! | AGGGATTCATTCTTGATAGT+TGG | - | chr1_3:66934705-66934724 | Msa0135300:intron | 35.0% |
| TAAGATCATCACACAATCAC+AGG | + | chr1_3:66934979-66934998 | None:intergenic | 35.0% | |
| GCCTACAAACCATAACATTA+AGG | + | chr1_3:66935003-66935022 | None:intergenic | 35.0% | |
| TGTAAATTCAAGCCTCAACT+TGG | - | chr1_3:66935268-66935287 | Msa0135300:intron | 35.0% | |
| ATCATTTGGCATTTAGTGGT+TGG | - | chr1_3:66935321-66935340 | Msa0135300:intron | 35.0% | |
| ACATGAAATATCAATAGCGG+TGG | - | chr1_3:66935375-66935394 | Msa0135300:CDS | 35.0% | |
| TAAAGGTCTTCTTTGTTGGA+CGG | - | chr1_3:66935500-66935519 | Msa0135300:intron | 35.0% | |
| CCAGAATAAGAGAGTAAAGA+AGG | + | chr1_3:66935540-66935559 | None:intergenic | 35.0% | |
| CCTTCTTTACTCTCTTATTC+TGG | - | chr1_3:66935537-66935556 | Msa0135300:intron | 35.0% | |
| TTACTCTCTTATTCTGGGTT+TGG | - | chr1_3:66935543-66935562 | Msa0135300:intron | 35.0% | |
| TCTTAAATGGATGCAACATG+TGG | - | chr1_3:66935846-66935865 | Msa0135300:CDS | 35.0% | |
| GAACCTAATAAAAGTGGTAG+GGG | - | chr1_3:66935961-66935980 | Msa0135300:intron | 35.0% | |
| !! | ATTCCCCTACCACTTTTATT+AGG | + | chr1_3:66935967-66935986 | None:intergenic | 35.0% |
| ATAAAAGTGGTAGGGGAATA+TGG | - | chr1_3:66935968-66935987 | Msa0135300:intron | 35.0% | |
| TAAAAGTGGTAGGGGAATAT+GGG | - | chr1_3:66935969-66935988 | Msa0135300:intron | 35.0% | |
| TTCGTAATCAAGTCATCTAG+AGG | - | chr1_3:66936098-66936117 | Msa0135300:intron | 35.0% | |
| TCGTAATCAAGTCATCTAGA+GGG | - | chr1_3:66936099-66936118 | Msa0135300:intron | 35.0% | |
| TGTAAGTATCCCAATGTACA+TGG | - | chr1_3:66936232-66936251 | Msa0135300:intron | 35.0% | |
| GACAAAATATTGACAAGAGG+TGG | - | chr1_3:66936271-66936290 | Msa0135300:intron | 35.0% | |
| AACAATCCTACACAGATTCT+TGG | - | chr1_3:66936475-66936494 | Msa0135300:CDS | 35.0% | |
| TGAGTTGCTGCTATTATAGT+TGG | - | chr1_3:66936512-66936531 | Msa0135300:CDS | 35.0% | |
| ! | TGCTGCTATTATAGTTGGTA+AGG | - | chr1_3:66936517-66936536 | Msa0135300:CDS | 35.0% |
| TAAAGCATATGTTGCAACCA+TGG | + | chr1_3:66936620-66936639 | None:intergenic | 35.0% | |
| TTTGTGTATAGCAATGCTAG+CGG | - | chr1_3:66936712-66936731 | Msa0135300:CDS | 35.0% | |
| AGATATTCTTATAGGCAGCA+AGG | + | chr1_3:66936865-66936884 | None:intergenic | 35.0% | |
| TTGCTGCCTATAAGAATATC+TGG | - | chr1_3:66936864-66936883 | Msa0135300:CDS | 35.0% | |
| CTCTTGCCAGATATTCTTAT+AGG | + | chr1_3:66936873-66936892 | None:intergenic | 35.0% | |
| ATTAGGTCAAAATCTTGCAC+AGG | - | chr1_3:66937048-66937067 | Msa0135300:CDS | 35.0% | |
| CAAATTGTTCAACTGATAGC+TGG | + | chr1_3:66937081-66937100 | None:intergenic | 35.0% | |
| TATACAAGATGCCAAAGCTA+TGG | + | chr1_3:66937234-66937253 | None:intergenic | 35.0% | |
| CATCTTGTATAACCTTGTCA+GGG | - | chr1_3:66937243-66937262 | Msa0135300:intron | 35.0% | |
| AGATGTCTCTCAGCAATTAA+TGG | - | chr1_3:66937379-66937398 | Msa0135300:intron | 35.0% | |
| ! | ACTATTTTATGTGCATGCAC+GGG | + | chr1_3:66937535-66937554 | None:intergenic | 35.0% |
| ATGAAGAGATTGAGAAAGGG+TGG | - | chr1_3:66931052-66931071 | Msa0135300:three_prime_UTR | 40.0% | |
| TGAAGAGATTGAGAAAGGGT+GGG | - | chr1_3:66931053-66931072 | Msa0135300:three_prime_UTR | 40.0% | |
| ! | GAAGGGTAGCTTGTATTTCA+AGG | + | chr1_3:66931189-66931208 | None:intergenic | 40.0% |
| GGAATGGGAAAAAGGGAATT+AGG | + | chr1_3:66931223-66931242 | None:intergenic | 40.0% | |
| GGTGATTGGAATGGGAAAAA+GGG | + | chr1_3:66931230-66931249 | None:intergenic | 40.0% | |
| AATTGATCGAGATCGGTGAT+TGG | + | chr1_3:66931244-66931263 | None:intergenic | 40.0% | |
| CAACAACCAATGATCCAAGA+AGG | + | chr1_3:66931640-66931659 | None:intergenic | 40.0% | |
| ! | CTTCTTGGATCATTGGTTGT+TGG | - | chr1_3:66931638-66931657 | Msa0135300:intron | 40.0% |
| ! | TCTTGGATCATTGGTTGTTG+GGG | - | chr1_3:66931640-66931659 | Msa0135300:intron | 40.0% |
| ATTGGTTGTTGGGGAGATTA+TGG | - | chr1_3:66931649-66931668 | Msa0135300:intron | 40.0% | |
| GAAGACCGTAATTTAAACGG+CGG | - | chr1_3:66931836-66931855 | Msa0135300:exon | 40.0% | |
| !! | AGTGTTGTTTCCATCATAGG+TGG | + | chr1_3:66931870-66931889 | None:intergenic | 40.0% |
| GCCGAAACCATTATAATCAG+AGG | - | chr1_3:66931903-66931922 | Msa0135300:CDS | 40.0% | |
| TATGACAATCAGGCCAACTT+TGG | - | chr1_3:66931941-66931960 | Msa0135300:intron | 40.0% | |
| TGGCATAGTCAACATTGCAT+TGG | + | chr1_3:66931988-66932007 | None:intergenic | 40.0% | |
| TGAGGCAACATTGGCATAAT+TGG | + | chr1_3:66932017-66932036 | None:intergenic | 40.0% | |
| TCTCTTCTTCAGAGATGATG+AGG | + | chr1_3:66932035-66932054 | None:intergenic | 40.0% | |
| AAATATTCAGCTCCTGTTCG+TGG | - | chr1_3:66932055-66932074 | Msa0135300:intron | 40.0% | |
| CTTGAAAATTGCGGGATGAA+GGG | + | chr1_3:66932126-66932145 | None:intergenic | 40.0% | |
| TTATAAGCGATGGATCTTGC+AGG | + | chr1_3:66932154-66932173 | None:intergenic | 40.0% | |
| TGAGGTAGAGTTATAAGCGA+TGG | + | chr1_3:66932164-66932183 | None:intergenic | 40.0% | |
| TGCTTCATGAAACACACTTG+CGG | - | chr1_3:66932290-66932309 | Msa0135300:intron | 40.0% | |
| TGTGCATTCCTTCAGAATCT+CGG | - | chr1_3:66932322-66932341 | Msa0135300:intron | 40.0% | |
| GATTCACATTGCTAGTCACA+TGG | - | chr1_3:66932364-66932383 | Msa0135300:intron | 40.0% | |
| !!! | TGTGCCACCGTTTTTTTGTT+CGG | - | chr1_3:66932524-66932543 | Msa0135300:intron | 40.0% |
| AATACGCTATTCAAAGGGCA+TGG | + | chr1_3:66932845-66932864 | None:intergenic | 40.0% | |
| ATCACGGTAAAGTTCAAGAC+GGG | - | chr1_3:66933018-66933037 | Msa0135300:intron | 40.0% | |
| CGAGTATCAACCGATAATAG+AGG | + | chr1_3:66933117-66933136 | None:intergenic | 40.0% | |
| ! | GGTTGATACTCGTCAAACTT+TGG | - | chr1_3:66933125-66933144 | Msa0135300:intron | 40.0% |
| TACTGTTCAAACCAATCCTG+TGG | + | chr1_3:66933188-66933207 | None:intergenic | 40.0% | |
| GGTTTGAACAGTATCGTGAA+CGG | - | chr1_3:66933195-66933214 | Msa0135300:intron | 40.0% | |
| GTTTGAACAGTATCGTGAAC+GGG | - | chr1_3:66933196-66933215 | Msa0135300:intron | 40.0% | |
| ! | ACAGATGTAAGAGGTGCATA+TGG | + | chr1_3:66933281-66933300 | None:intergenic | 40.0% |
| ! | AGGTCTTTCAAAGACCGTTT+TGG | - | chr1_3:66933313-66933332 | Msa0135300:intron | 40.0% |
| GCATTAAACTTGGTCAGTGA+AGG | - | chr1_3:66933344-66933363 | Msa0135300:intron | 40.0% | |
| ! | TTGTATGTGATGTTCTGAGC+TGG | - | chr1_3:66933469-66933488 | Msa0135300:intron | 40.0% |
| ! | GGCTAGTCAGAACCAATAAA+AGG | + | chr1_3:66933513-66933532 | None:intergenic | 40.0% |
| CAAGTCACTCGTTAGATAAC+TGG | + | chr1_3:66933534-66933553 | None:intergenic | 40.0% | |
| CTAGTCTAGGAAACAGTACA+CGG | - | chr1_3:66933565-66933584 | Msa0135300:intron | 40.0% | |
| TAGTCTAGGAAACAGTACAC+GGG | - | chr1_3:66933566-66933585 | Msa0135300:intron | 40.0% | |
| GAAAATATGTGTTGGGGCAT+AGG | + | chr1_3:66933951-66933970 | None:intergenic | 40.0% | |
| GCACAAACAACAACACAATG+AGG | + | chr1_3:66933982-66934001 | None:intergenic | 40.0% | |
| !! | TTGTTTGTGCTGATTACGGT+CGG | - | chr1_3:66933992-66934011 | Msa0135300:intron | 40.0% |
| ! | CGTTTAGGACAACAATAGAC+CGG | + | chr1_3:66934082-66934101 | None:intergenic | 40.0% |
| TTGTTGTCCTAAACGAGTTG+TGG | - | chr1_3:66934087-66934106 | Msa0135300:intron | 40.0% | |
| TGAAGCAGAGTTGTCAATTG+CGG | - | chr1_3:66934166-66934185 | Msa0135300:intron | 40.0% | |
| AAAACACAAACACAGCCATC+AGG | + | chr1_3:66934421-66934440 | None:intergenic | 40.0% | |
| ! | CAGGTGGAAAGTGTAAGAAA+TGG | + | chr1_3:66934585-66934604 | None:intergenic | 40.0% |
| TGTCTGACAGATTAGATGCT+TGG | - | chr1_3:66934919-66934938 | Msa0135300:intron | 40.0% | |
| CAACAACAGATGCATTTCCT+GGG | + | chr1_3:66935195-66935214 | None:intergenic | 40.0% | |
| TCAACAACAGATGCATTTCC+TGG | + | chr1_3:66935196-66935215 | None:intergenic | 40.0% | |
| GTGTCCATAAATGTTGTAGC+TGG | - | chr1_3:66935228-66935247 | Msa0135300:intron | 40.0% | |
| TTCAAGCCTCAACTTGGAAA+TGG | - | chr1_3:66935274-66935293 | Msa0135300:intron | 40.0% | |
| CCAAATGATGAGGAGATGAA+AGG | + | chr1_3:66935310-66935329 | None:intergenic | 40.0% | |
| CCTTTCATCTCCTCATCATT+TGG | - | chr1_3:66935307-66935326 | Msa0135300:intron | 40.0% | |
| CCACTAAATGCCAAATGATG+AGG | + | chr1_3:66935320-66935339 | None:intergenic | 40.0% | |
| CCTCATCATTTGGCATTTAG+TGG | - | chr1_3:66935317-66935336 | Msa0135300:intron | 40.0% | |
| GAGAAGGGTAGAGATAAGAA+GGG | + | chr1_3:66935642-66935661 | None:intergenic | 40.0% | |
| AGAGAAGGGTAGAGATAAGA+AGG | + | chr1_3:66935643-66935662 | None:intergenic | 40.0% | |
| TCTCTACCCTTCTCTTCTAT+TGG | - | chr1_3:66935648-66935667 | Msa0135300:intron | 40.0% | |
| TGAACCTTCAATGAACTCAC+TGG | - | chr1_3:66935688-66935707 | Msa0135300:intron | 40.0% | |
| GTTTCCAGTGAGTTCATTGA+AGG | + | chr1_3:66935695-66935714 | None:intergenic | 40.0% | |
| CATTGAATGATAAGGAGGGT+GGG | - | chr1_3:66935758-66935777 | Msa0135300:intron | 40.0% | |
| AGGGCGATCTGTATCTTAAA+TGG | - | chr1_3:66935833-66935852 | Msa0135300:CDS | 40.0% | |
| ! | AACCTCCTGATCTGAAATCA+GGG | + | chr1_3:66935894-66935913 | None:intergenic | 40.0% |
| ! | AAACCTCCTGATCTGAAATC+AGG | + | chr1_3:66935895-66935914 | None:intergenic | 40.0% |
| ! | ATCAGGAGGTTTTCTTGTGT+CGG | - | chr1_3:66935903-66935922 | Msa0135300:intron | 40.0% |
| AAAAGTGGTAGGGGAATATG+GGG | - | chr1_3:66935970-66935989 | Msa0135300:intron | 40.0% | |
| TCAAAATCCAACCACTGTGT+GGG | + | chr1_3:66936177-66936196 | None:intergenic | 40.0% | |
| TTGAGTTATTCTGCAGTGTG+TGG | - | chr1_3:66936193-66936212 | Msa0135300:CDS | 40.0% | |
| ATATTGACAAGAGGTGGCAT+TGG | - | chr1_3:66936277-66936296 | Msa0135300:intron | 40.0% | |
| ACTATGCCAAGAATCTGTGT+AGG | + | chr1_3:66936484-66936503 | None:intergenic | 40.0% | |
| ATAGCTGATATGATCAGCCA+TGG | - | chr1_3:66936600-66936619 | Msa0135300:CDS | 40.0% | |
| ! | TCTTTTTGTGTTGCGTCGAA+TGG | - | chr1_3:66936655-66936674 | Msa0135300:CDS | 40.0% |
| ATGTTCAAAACTTGGCAGCA+AGG | + | chr1_3:66936839-66936858 | None:intergenic | 40.0% | |
| !!! | TTGCTGCCAAGTTTTGAACA+TGG | - | chr1_3:66936838-66936857 | Msa0135300:CDS | 40.0% |
| CAAGGTCCATGTTCAAAACT+TGG | + | chr1_3:66936847-66936866 | None:intergenic | 40.0% | |
| GAATATCTGGCAAGAGTTTC+AGG | - | chr1_3:66936877-66936896 | Msa0135300:CDS | 40.0% | |
| TGTACCTTGAAGAACAGATG+GGG | + | chr1_3:66936906-66936925 | None:intergenic | 40.0% | |
| GTGTACCTTGAAGAACAGAT+GGG | + | chr1_3:66936907-66936926 | None:intergenic | 40.0% | |
| AGTGTACCTTGAAGAACAGA+TGG | + | chr1_3:66936908-66936927 | None:intergenic | 40.0% | |
| GCATCTTGTATAACCTTGTC+AGG | - | chr1_3:66937242-66937261 | Msa0135300:intron | 40.0% | |
| TTCAAGACAATTCCCTGACA+AGG | + | chr1_3:66937258-66937277 | None:intergenic | 40.0% | |
| !! | TCAGTGTTGTTTCTGGAGTT+TGG | - | chr1_3:66937503-66937522 | Msa0135300:CDS | 40.0% |
| !!! | GTTGTTTTTCTTGGCGTCAT+TGG | - | chr1_3:66937599-66937618 | Msa0135300:CDS | 40.0% |
| ! | TGGGTTGGGTTAGGTTTAGT+TGG | + | chr1_3:66931094-66931113 | None:intergenic | 45.0% |
| CGGTGATTGGAATGGGAAAA+AGG | + | chr1_3:66931231-66931250 | None:intergenic | 45.0% | |
| TCGAGATCGGTGATTGGAAT+GGG | + | chr1_3:66931238-66931257 | None:intergenic | 45.0% | |
| ATCGAGATCGGTGATTGGAA+TGG | + | chr1_3:66931239-66931258 | None:intergenic | 45.0% | |
| CAGAGATGATGAGGCAACAT+TGG | + | chr1_3:66932026-66932045 | None:intergenic | 45.0% | |
| ATACTGTCATAGACTGTGGC+TGG | + | chr1_3:66932103-66932122 | None:intergenic | 45.0% | |
| AGGGATACTGTCATAGACTG+TGG | + | chr1_3:66932107-66932126 | None:intergenic | 45.0% | |
| GCTTGAAAATTGCGGGATGA+AGG | + | chr1_3:66932127-66932146 | None:intergenic | 45.0% | |
| TCCTTCAGAATCTCGGAACA+AGG | - | chr1_3:66932329-66932348 | Msa0135300:intron | 45.0% | |
| TACAGGCCTCAAACTACCAT+TGG | - | chr1_3:66932487-66932506 | Msa0135300:intron | 45.0% | |
| ACAGGCCTCAAACTACCATT+GGG | - | chr1_3:66932488-66932507 | Msa0135300:intron | 45.0% | |
| GATGTCCCAATGGTAGTTTG+AGG | + | chr1_3:66932496-66932515 | None:intergenic | 45.0% | |
| AACTACCATTGGGACATCCA+TGG | - | chr1_3:66932498-66932517 | Msa0135300:intron | 45.0% | |
| ATCGCCGAACAAAAAAACGG+TGG | + | chr1_3:66932531-66932550 | None:intergenic | 45.0% | |
| GCGATCGCCGAACAAAAAAA+CGG | + | chr1_3:66932534-66932553 | None:intergenic | 45.0% | |
| ! | ACTGCTGCTCTTTTTCTTGC+TGG | - | chr1_3:66932803-66932822 | Msa0135300:intron | 45.0% |
| ! | CTGCTGCTCTTTTTCTTGCT+GGG | - | chr1_3:66932804-66932823 | Msa0135300:intron | 45.0% |
| ACTCACAACAGGAAACCAGT+AGG | + | chr1_3:66932915-66932934 | None:intergenic | 45.0% | |
| CGTGTACTGTTTCCTAGACT+AGG | + | chr1_3:66933567-66933586 | None:intergenic | 45.0% | |
| AGTCTAGGAAACAGTACACG+GGG | - | chr1_3:66933567-66933586 | Msa0135300:intron | 45.0% | |
| !! | AAATTTTGGAGGGCCACCAA+GGG | + | chr1_3:66933660-66933679 | None:intergenic | 45.0% |
| !! | AAAATTTTGGAGGGCCACCA+AGG | + | chr1_3:66933661-66933680 | None:intergenic | 45.0% |
| !! | TTGGTGGCCCTCCAAAATTT+TGG | - | chr1_3:66933660-66933679 | Msa0135300:intron | 45.0% |
| ! | GCGGATTGATATGCTGTTCT+TGG | - | chr1_3:66933830-66933849 | Msa0135300:intron | 45.0% |
| AGATTGTCGTCAGCCATGTT+TGG | + | chr1_3:66934018-66934037 | None:intergenic | 45.0% | |
| TGTGAGCCATTTCCAAGTTG+AGG | + | chr1_3:66935283-66935302 | None:intergenic | 45.0% | |
| GCATTGAATGATAAGGAGGG+TGG | - | chr1_3:66935757-66935776 | Msa0135300:intron | 45.0% | |
| AATCGCTTTCCACCTCAGAA+AGG | - | chr1_3:66935813-66935832 | Msa0135300:CDS | 45.0% | |
| ATCGCTTTCCACCTCAGAAA+GGG | - | chr1_3:66935814-66935833 | Msa0135300:CDS | 45.0% | |
| ! | ACCTCCTGATCTGAAATCAG+GGG | + | chr1_3:66935893-66935912 | None:intergenic | 45.0% |
| CTCAAAATCCAACCACTGTG+TGG | + | chr1_3:66936178-66936197 | None:intergenic | 45.0% | |
| TCCCAATGTACATGGTAGCA+AGG | - | chr1_3:66936240-66936259 | Msa0135300:intron | 45.0% | |
| GCCTTGCTACCATGTACATT+GGG | + | chr1_3:66936244-66936263 | None:intergenic | 45.0% | |
| AGCCTTGCTACCATGTACAT+TGG | + | chr1_3:66936245-66936264 | None:intergenic | 45.0% | |
| AAACCCCATCAAATTGCTGC+TGG | - | chr1_3:66936804-66936823 | Msa0135300:CDS | 45.0% | |
| AGCTCCAGCAGCAATTTGAT+GGG | + | chr1_3:66936811-66936830 | None:intergenic | 45.0% | |
| !! | CAGGTCATCAGTGTTGTTTC+TGG | - | chr1_3:66937496-66937515 | Msa0135300:CDS | 45.0% |
| ! | TTTTATGTGCATGCACGGGT+AGG | + | chr1_3:66937531-66937550 | None:intergenic | 45.0% |
| !!! | TTTTTTTAAAAAAAAATTGA+AGG | - | chr1_3:66934438-66934457 | Msa0135300:intron | 5.0% |
| ! | AGATTGAGAAAGGGTGGGCT+GGG | - | chr1_3:66931058-66931077 | Msa0135300:three_prime_UTR | 50.0% |
| GGTTATCGGTCCACCTATGA+TGG | - | chr1_3:66931857-66931876 | Msa0135300:CDS | 50.0% | |
| CAGGCCAACTTTGGCTACTA+TGG | - | chr1_3:66931950-66931969 | Msa0135300:intron | 50.0% | |
| GCCAACTTTGGCTACTATGG+TGG | - | chr1_3:66931953-66931972 | Msa0135300:intron | 50.0% | |
| GCCACCATAGTAGCCAAAGT+TGG | + | chr1_3:66931957-66931976 | None:intergenic | 50.0% | |
| !! | TTCTGGCTTTCTCCACGAAC+AGG | + | chr1_3:66932070-66932089 | None:intergenic | 50.0% |
| TGGCTGGAAGAGTGAACTTC+TGG | + | chr1_3:66932087-66932106 | None:intergenic | 50.0% | |
| ! | GCCTTGTTCCGAGATTCTGA+AGG | + | chr1_3:66932333-66932352 | None:intergenic | 50.0% |
| CAGAACCATGGATGTCCCAA+TGG | + | chr1_3:66932506-66932525 | None:intergenic | 50.0% | |
| AAAACGGTGGCACAGAACCA+TGG | + | chr1_3:66932518-66932537 | None:intergenic | 50.0% | |
| TGATTACGGTCGGCCAAACA+TGG | - | chr1_3:66934002-66934021 | Msa0135300:intron | 50.0% | |
| TTGACTCTGGTGGAAAGGAG+TGG | + | chr1_3:66934137-66934156 | None:intergenic | 50.0% | |
| AGTTGTCAATTGCGGATCGC+AGG | - | chr1_3:66934174-66934193 | Msa0135300:intron | 50.0% | |
| !! | GTTGGACGGATTGTGAACTG+TGG | - | chr1_3:66935514-66935533 | Msa0135300:intron | 50.0% |
| GATACAGATCGCCCTTTCTG+AGG | + | chr1_3:66935828-66935847 | None:intergenic | 50.0% | |
| ACCTCCCCTGATTTCAGATC+AGG | - | chr1_3:66935886-66935905 | Msa0135300:CDS | 50.0% | |
| ! | TCCTGATCTGAAATCAGGGG+AGG | + | chr1_3:66935890-66935909 | None:intergenic | 50.0% |
| TCCCCTGATTTCAGATCAGG+AGG | - | chr1_3:66935889-66935908 | Msa0135300:CDS | 50.0% | |
| GGTGTTCTGTTGCCACGAAA+CGG | - | chr1_3:66935924-66935943 | Msa0135300:intron | 50.0% | |
| CAGTAGAGAGATCCGTTTCG+TGG | + | chr1_3:66935939-66935958 | None:intergenic | 50.0% | |
| TTTCTCCTATGCCCACACAG+TGG | - | chr1_3:66936163-66936182 | Msa0135300:CDS | 50.0% | |
| GCTCCAGCAGCAATTTGATG+GGG | + | chr1_3:66936810-66936829 | None:intergenic | 50.0% | |
| CAGCTCCAGCAGCAATTTGA+TGG | + | chr1_3:66936812-66936831 | None:intergenic | 50.0% | |
| GCAACCCCATCTGTTCTTCA+AGG | - | chr1_3:66936899-66936918 | Msa0135300:intron | 50.0% | |
| GAGATTGAGAAAGGGTGGGC+TGG | - | chr1_3:66931057-66931076 | Msa0135300:three_prime_UTR | 55.0% | |
| ATCCACTTCGCTGCTTCCTC+AGG | - | chr1_3:66931270-66931289 | Msa0135300:three_prime_UTR | 55.0% | |
| TACCTGAGGAAGCAGCGAAG+TGG | + | chr1_3:66931275-66931294 | None:intergenic | 55.0% | |
| ! | ATCAGGCTTCAGGCTAGCTG+AGG | + | chr1_3:66932182-66932201 | None:intergenic | 55.0% |
| GTATCGTGAACGGGTGCTTG+AGG | - | chr1_3:66933205-66933224 | Msa0135300:intron | 55.0% | |
| ! | CTGAGCTGGTGATGCTCTTC+AGG | - | chr1_3:66933483-66933502 | Msa0135300:intron | 55.0% |
| GTGTGGAGATCTTGTCGACG+AGG | - | chr1_3:66933629-66933648 | Msa0135300:intron | 55.0% | |
| TGTCGACGAGGAAGATCCCT+TGG | - | chr1_3:66933641-66933660 | Msa0135300:intron | 55.0% | |
| ATAGACCCTCTGCTGCCTGA+TGG | - | chr1_3:66934403-66934422 | Msa0135300:intron | 55.0% | |
| ! | ACAGATCGCCCTTTCTGAGG+TGG | + | chr1_3:66935825-66935844 | None:intergenic | 55.0% |
| TCCTATGCCCACACAGTGGT+TGG | - | chr1_3:66936167-66936186 | Msa0135300:CDS | 55.0% | |
| TCCAACCACTGTGTGGGCAT+AGG | + | chr1_3:66936171-66936190 | None:intergenic | 55.0% | |
| TCCAGACCCAACTCTGCTGT+GGG | + | chr1_3:66936397-66936416 | None:intergenic | 55.0% | |
| TTCCAGACCCAACTCTGCTG+TGG | + | chr1_3:66936398-66936417 | None:intergenic | 55.0% | |
| GCAGGCTTCGTAGCTCTCTT+TGG | - | chr1_3:66936772-66936791 | Msa0135300:CDS | 55.0% | |
| CGACGAGGAAGATCCCTTGG+TGG | - | chr1_3:66933644-66933663 | Msa0135300:intron | 60.0% | |
| GTGTTGGGGCATAGGGCTCT+TGG | + | chr1_3:66933943-66933962 | None:intergenic | 60.0% | |
| CACAGCCATCAGGCAGCAGA+GGG | + | chr1_3:66934411-66934430 | None:intergenic | 60.0% | |
| ACACAGCCATCAGGCAGCAG+AGG | + | chr1_3:66934412-66934431 | None:intergenic | 60.0% | |
| AGAGCCTCCCACAGCAGAGT+TGG | - | chr1_3:66936387-66936406 | Msa0135300:CDS | 60.0% | |
| GAGCCTCCCACAGCAGAGTT+GGG | - | chr1_3:66936388-66936407 | Msa0135300:CDS | 60.0% | |
| AGACCCAACTCTGCTGTGGG+AGG | + | chr1_3:66936394-66936413 | None:intergenic | 60.0% | |
| TCCCACAGCAGAGTTGGGTC+TGG | - | chr1_3:66936393-66936412 | Msa0135300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66931052 | 66937656 | 66931052 | ID=Msa0135300;Name=Msa0135300 |
| chr1_3 | mRNA | 66931052 | 66937656 | 66931052 | ID=Msa0135300-mRNA-1;Parent=Msa0135300;Name=Msa0135300-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.71|0.75|0.87|0.85|0.87|8|342|436 |
| chr1_3 | exon | 66931052 | 66931327 | 66931052 | ID=Msa0135300-mRNA-1:exon:22945;Parent=Msa0135300-mRNA-1 |
| chr1_3 | exon | 66931788 | 66931932 | 66931788 | ID=Msa0135300-mRNA-1:exon:22944;Parent=Msa0135300-mRNA-1 |
| chr1_3 | exon | 66935342 | 66935517 | 66935342 | ID=Msa0135300-mRNA-1:exon:22943;Parent=Msa0135300-mRNA-1 |
| chr1_3 | exon | 66935780 | 66935914 | 66935780 | ID=Msa0135300-mRNA-1:exon:22942;Parent=Msa0135300-mRNA-1 |
| chr1_3 | exon | 66936135 | 66936216 | 66936135 | ID=Msa0135300-mRNA-1:exon:22941;Parent=Msa0135300-mRNA-1 |
| chr1_3 | exon | 66936349 | 66936904 | 66936349 | ID=Msa0135300-mRNA-1:exon:22940;Parent=Msa0135300-mRNA-1 |
| chr1_3 | exon | 66937038 | 66937080 | 66937038 | ID=Msa0135300-mRNA-1:exon:22939;Parent=Msa0135300-mRNA-1 |
| chr1_3 | exon | 66937417 | 66937656 | 66937417 | ID=Msa0135300-mRNA-1:exon:22938;Parent=Msa0135300-mRNA-1 |
| chr1_3 | CDS | 66937417 | 66937656 | 66937417 | ID=Msa0135300-mRNA-1:cds;Parent=Msa0135300-mRNA-1 |
| chr1_3 | CDS | 66937038 | 66937080 | 66937038 | ID=Msa0135300-mRNA-1:cds;Parent=Msa0135300-mRNA-1 |
| chr1_3 | CDS | 66936349 | 66936904 | 66936349 | ID=Msa0135300-mRNA-1:cds;Parent=Msa0135300-mRNA-1 |
| chr1_3 | CDS | 66936135 | 66936216 | 66936135 | ID=Msa0135300-mRNA-1:cds;Parent=Msa0135300-mRNA-1 |
| chr1_3 | CDS | 66935780 | 66935914 | 66935780 | ID=Msa0135300-mRNA-1:cds;Parent=Msa0135300-mRNA-1 |
| chr1_3 | CDS | 66935342 | 66935517 | 66935342 | ID=Msa0135300-mRNA-1:cds;Parent=Msa0135300-mRNA-1 |
| chr1_3 | CDS | 66931854 | 66931932 | 66931854 | ID=Msa0135300-mRNA-1:cds;Parent=Msa0135300-mRNA-1 |
| chr1_3 | three_prime_UTR | 66931788 | 66931853 | 66931788 | ID=Msa0135300-mRNA-1:three_prime_utr;Parent=Msa0135300-mRNA-1 |
| chr1_3 | three_prime_UTR | 66931052 | 66931327 | 66931052 | ID=Msa0135300-mRNA-1:three_prime_utr;Parent=Msa0135300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
