AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040520 MtrunA17_Chr1g0205721 94.785 326 10 3 68 389 1 323 0.0 594
Msa0040520 MtrunA17_Chr4g0043411 51.709 234 111 1 209 440 35 268 1.17e-78 255
Msa0040520 MtrunA17_Chr2g0311581 50.000 234 115 1 209 440 34 267 1.47e-74 245
Msa0040520 MtrunA17_Chr7g0259201 44.318 176 98 0 209 384 5 180 1.48e-48 171
Msa0040520 MtrunA17_Chr5g0422971 32.174 230 142 4 218 440 18 240 2.36e-25 107
Msa0040520 MtrunA17_Chr5g0397381 31.304 230 144 4 218 440 18 240 4.61e-24 103
Msa0040520 MtrunA17_Chr7g0259191 44.068 118 63 2 326 440 6 123 2.89e-16 80.1
Msa0040520 MtrunA17_Chr7g0235101 22.318 233 165 3 209 440 14 231 5.99e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040520 AT4G19600.1 50.000 234 115 1 209 440 34 267 1.75e-75 246
Msa0040520 AT5G45190.1 50.427 234 114 1 209 440 34 267 1.39e-74 244
Msa0040520 AT5G45190.2 47.347 245 116 2 209 440 34 278 3.55e-69 230
Msa0040520 AT4G19560.1 48.101 237 117 3 207 440 30 263 2.31e-62 209
Msa0040520 AT1G27630.1 42.241 232 133 1 209 440 35 265 3.93e-58 194
Msa0040520 AT1G27630.4 42.793 222 126 1 209 430 35 255 4.83e-56 187
Msa0040520 AT1G35440.1 37.872 235 133 4 211 440 10 236 1.12e-43 154
Msa0040520 AT5G45190.3 46.835 158 82 1 285 440 1 158 2.55e-39 147
Msa0040520 AT1G27630.6 38.674 181 110 1 260 440 1 180 6.32e-36 132
Msa0040520 AT1G27630.3 38.674 181 110 1 260 440 1 180 6.32e-36 132
Msa0040520 AT1G27630.5 38.674 181 110 1 260 440 1 180 6.32e-36 132
Msa0040520 AT1G27630.2 38.674 181 110 1 260 440 1 180 6.32e-36 132
Msa0040520 AT4G19560.2 42.683 164 88 3 280 440 31 191 2.42e-28 115
Msa0040520 AT2G26430.4 29.289 239 155 4 209 440 9 240 1.73e-23 100
Msa0040520 AT2G26430.1 29.437 231 149 4 217 440 17 240 4.66e-23 101
Msa0040520 AT5G48630.2 23.645 203 134 4 241 440 50 234 1.52e-12 67.8
Msa0040520 AT5G48630.1 23.645 203 134 4 241 440 47 231 1.60e-12 67.8
Msa0040520 AT2G26430.3 26.042 192 128 4 256 440 1 185 3.59e-12 67.8
Msa0040520 AT2G26430.2 26.042 192 128 4 256 440 1 185 3.59e-12 67.8

Find 102 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTCATCAGTGTTGTTTC+TGG 0.168482 1_1:-70749523 Msa0040520:three_prime_UTR
ACTTGGAATATGCGATTATT+TGG 0.186755 1_1:-70749459 Msa0040520:three_prime_UTR
GAATATCTGGCAAGAGTTTC+AGG 0.206952 1_1:-70750142 Msa0040520:CDS
TGAGGCAACATTGGCATAAT+TGG 0.250561 1_1:+70755034 None:intergenic
TTCTTGGATCATTGGTTGTT+GGG 0.251039 1_1:-70755409 Msa0040520:CDS
CGGTGATTGGAATGGGAAAA+AGG 0.258972 1_1:+70755820 None:intergenic
ATTGGTTGTTGGGGAGATTA+TGG 0.273877 1_1:-70755399 Msa0040520:intron
CTCTTGCCAGATATTCTTAT+AGG 0.278279 1_1:+70750149 None:intergenic
ACATCTGTTCTGAACAAATT+AGG 0.280827 1_1:-70753755 Msa0040520:CDS
TGTATTTCAAGGTCAGAAAA+AGG 0.284030 1_1:+70755873 None:intergenic
TCAGTGTTGTTTCTGGAGTT+TGG 0.286903 1_1:-70749516 Msa0040520:three_prime_UTR
TCCTCTGATTATAATGGTTT+CGG 0.288681 1_1:+70755144 None:intergenic
CTTCTTGGATCATTGGTTGT+TGG 0.311002 1_1:-70755410 Msa0040520:CDS
GCAGGCTTCGTAGCTCTCTT+TGG 0.313661 1_1:-70750248 Msa0040520:intron
TATAATTCCTCTGATTATAA+TGG 0.322076 1_1:+70755138 None:intergenic
AGATGTCTCTCAGCAATTAA+TGG 0.325317 1_1:-70749640 Msa0040520:CDS
TTTAAAACTTGGGTTGGGTT+AGG 0.342890 1_1:+70755944 None:intergenic
TTGCTGCCTATAAGAATATC+TGG 0.344912 1_1:-70750155 Msa0040520:CDS
CAGGCCAACTTTGGCTACTA+TGG 0.349614 1_1:-70755098 Msa0040520:CDS
GTAATTTAAACGGCGGTTAT+CGG 0.353039 1_1:-70755205 Msa0040520:CDS
ATCAGTGTTGTTTCCATCAT+AGG 0.362225 1_1:+70755178 None:intergenic
TGGCTGGAAGAGTGAACTTC+TGG 0.371306 1_1:+70754964 None:intergenic
ATATAGAGAAATCAGGCTTC+AGG 0.384419 1_1:+70754859 None:intergenic
AGGATAAGCTTGAAAATTGC+GGG 0.386508 1_1:+70754917 None:intergenic
AGGTCTTTCAAAGACCGTTT+TGG 0.405949 1_1:-70753735 Msa0040520:CDS
TTCTGGCTTTCTCCACGAAC+AGG 0.416510 1_1:+70754981 None:intergenic
GATAACCGCCGTTTAAATTA+CGG 0.417471 1_1:+70755207 None:intergenic
GAATATGCGATTATTTGGTT+TGG 0.418814 1_1:-70749454 Msa0040520:three_prime_UTR
CAGCTCCAGCAGCAATTTGA+TGG 0.421370 1_1:+70750211 None:intergenic
ATGATGGAAACAACACTGAT+AGG 0.434683 1_1:-70755175 Msa0040520:CDS
GAAGGGTAGCTTGTATTTCA+AGG 0.439047 1_1:+70755862 None:intergenic
ATCCACTTCGCTGCTTCCTC+AGG 0.441902 1_1:-70755778 Msa0040520:intron
TCATCCCTTGACATAAAGAT+AGG 0.443536 1_1:+70754822 None:intergenic
GCTTGAAAATTGCGGGATGA+AGG 0.445664 1_1:+70754924 None:intergenic
AAACCCCATCAAATTGCTGC+TGG 0.448967 1_1:-70750216 Msa0040520:CDS
TACAGGCCTCAAACTACCAT+TGG 0.464526 1_1:-70754561 Msa0040520:intron
ACAGATGTAAGAGGTGCATA+TGG 0.464848 1_1:+70753770 None:intergenic
TAACAACTACTGTGACAATC+AGG 0.466056 1_1:-70755117 Msa0040520:CDS
TCATCAAATATAGAGAAATC+AGG 0.467039 1_1:+70754852 None:intergenic
AATTGATCGAGATCGGTGAT+TGG 0.470340 1_1:+70755807 None:intergenic
AAACATGGATTAATCTAAAA+CGG 0.472885 1_1:+70755901 None:intergenic
TTGTTCAGAACAGATGTAAG+AGG 0.473356 1_1:+70753761 None:intergenic
TTATAAGCGATGGATCTTGC+AGG 0.473953 1_1:+70754897 None:intergenic
GGTTATCGGTCCACCTATGA+TGG 0.475605 1_1:-70755191 Msa0040520:CDS
GGTGAATATGGCATTAAACT+TGG 0.477866 1_1:-70753714 Msa0040520:CDS
GTTTGAACAGTATCGTGAAC+GGG 0.484464 1_1:-70753852 Msa0040520:CDS
AAATATTCAGCTCCTGTTCG+TGG 0.486093 1_1:-70754993 Msa0040520:CDS
TGTGACAATCAGGCCAACTT+TGG 0.487366 1_1:-70755107 Msa0040520:CDS
TGTGCATTCCTTCAGAATCT+CGG 0.487420 1_1:-70754726 Msa0040520:CDS
ACATAAAATAGTTTGAAACT+TGG 0.491419 1_1:-70749476 Msa0040520:three_prime_UTR
AACTCTCCATCAAGAAAAGA+TGG 0.491522 1_1:-70754789 Msa0040520:CDS
CTTGAAAATTGCGGGATGAA+GGG 0.492078 1_1:+70754925 None:intergenic
TCTACTCTATACTGAAATCA+TGG 0.493737 1_1:+70749584 None:intergenic
GCAACCCCATCTGTTCTTCA+AGG 0.496041 1_1:-70750120 Msa0040520:intron
AGCTCCAGCAGCAATTTGAT+GGG 0.496152 1_1:+70750212 None:intergenic
TTGTTTGTGTAAGATTTCAC+TGG 0.497574 1_1:+70754175 None:intergenic
TCTTGGATCATTGGTTGTTG+GGG 0.498543 1_1:-70755408 Msa0040520:CDS
CAGAGATGATGAGGCAACAT+TGG 0.501968 1_1:+70755025 None:intergenic
TCGAGATCGGTGATTGGAAT+GGG 0.507392 1_1:+70755813 None:intergenic
ATCGAGATCGGTGATTGGAA+TGG 0.508473 1_1:+70755812 None:intergenic
GCTGAAGACCGTAATTTAAA+CGG 0.509517 1_1:-70755215 Msa0040520:CDS
TAGCATAGTCAACATTGCAT+TGG 0.514739 1_1:+70755063 None:intergenic
ATACTGTCATAGACTGTGGC+TGG 0.517066 1_1:+70754948 None:intergenic
ACAGGCCTCAAACTACCATT+GGG 0.525531 1_1:-70754560 Msa0040520:intron
GCATTAAACTTGGTCAGTGA+AGG 0.526256 1_1:-70753704 Msa0040520:CDS
GTTCTCAATACGCTATTCAA+AGG 0.527521 1_1:+70754200 None:intergenic
TCCTTCAGAATCTCGGAACA+AGG 0.531055 1_1:-70754719 Msa0040520:CDS
CAGGATAAGCTTGAAAATTG+CGG 0.532175 1_1:+70754916 None:intergenic
TAATGCCATATTCACCAAAA+CGG 0.532860 1_1:+70753721 None:intergenic
TTCTCAATACGCTATTCAAA+GGG 0.535468 1_1:+70754201 None:intergenic
ATAAGCCTATCTTTATGTCA+AGG 0.539467 1_1:-70754827 Msa0040520:CDS
TCTCTTCTTCAGAGATGATG+AGG 0.541037 1_1:+70755016 None:intergenic
CAACAACCAATGATCCAAGA+AGG 0.565001 1_1:+70755411 None:intergenic
GCCACCATAGTAGCCAAAGT+TGG 0.567755 1_1:+70755094 None:intergenic
AGTGTACCTTGAAGAACAGA+TGG 0.575995 1_1:+70750114 None:intergenic
AACTACCATTGGGACATCCA+TGG 0.577912 1_1:-70754550 Msa0040520:CDS
AGTGTTGTTTCCATCATAGG+TGG 0.578351 1_1:+70755181 None:intergenic
GCCGAAACCATTATAATCAG+AGG 0.583182 1_1:-70755145 Msa0040520:CDS
TTGAGAAGTAGAATTACTAC+AGG 0.585877 1_1:-70749542 Msa0040520:three_prime_UTR
TAAGCCTATCTTTATGTCAA+GGG 0.590422 1_1:-70754826 Msa0040520:CDS
GCTCCAGCAGCAATTTGATG+GGG 0.593348 1_1:+70750213 None:intergenic
AATACGCTATTCAAAGGGCA+TGG 0.596502 1_1:+70754206 None:intergenic
GCCAACTTTGGCTACTATGG+TGG 0.598804 1_1:-70755095 Msa0040520:CDS
GATGTCCCAATGGTAGTTTG+AGG 0.599085 1_1:+70754555 None:intergenic
CATTAAACTTGGTCAGTGAA+GGG 0.599530 1_1:-70753703 Msa0040520:intron
ATCAGGCTTCAGGCTAGCTG+AGG 0.599685 1_1:+70754869 None:intergenic
GTATCGTGAACGGGTGCTTG+AGG 0.601601 1_1:-70753843 Msa0040520:CDS
GGTTTGAACAGTATCGTGAA+CGG 0.606171 1_1:-70753853 Msa0040520:CDS
TGAGGTAGAGTTATAAGCGA+TGG 0.612383 1_1:+70754887 None:intergenic
AACAACCAATGATCCAAGAA+GGG 0.612992 1_1:+70755412 None:intergenic
GTGTACCTTGAAGAACAGAT+GGG 0.613797 1_1:+70750115 None:intergenic
CAGAACCATGGATGTCCCAA+TGG 0.621402 1_1:+70754545 None:intergenic
TCTGATGAATTGATCGAGAT+CGG 0.622143 1_1:+70755800 None:intergenic
AAAACGGTGGCACAGAACCA+TGG 0.624859 1_1:+70754533 None:intergenic
AGATATTCTTATAGGCAGCA+AGG 0.627605 1_1:+70750157 None:intergenic
TACCTGAGGAAGCAGCGAAG+TGG 0.641339 1_1:+70755776 None:intergenic
GCCTTGTTCCGAGATTCTGA+AGG 0.646755 1_1:+70754718 None:intergenic
TGCTTCATGAAACACACTTG+CGG 0.665068 1_1:-70754758 Msa0040520:CDS
ACTCACAACAGGAAACCAGT+AGG 0.689885 1_1:+70754136 None:intergenic
GAAGACCGTAATTTAAACGG+CGG 0.704636 1_1:-70755212 Msa0040520:CDS
TGTACCTTGAAGAACAGATG+GGG 0.723899 1_1:+70750116 None:intergenic
AGGGATACTGTCATAGACTG+TGG 0.766838 1_1:+70754944 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCAATTAAGAAAATTT+TGG + chr1_1:70749657-70749676 None:intergenic 10.0%
!!! AGTTCTTTTTAAATATTAAT+TGG - chr1_1:70749860-70749879 Msa0040520:intron 10.0%
!!! TATGAATAACATATTTTATT+AGG - chr1_1:70755343-70755362 Msa0040520:intron 10.0%
!!! AATTGTATGTATAATTTTGT+TGG - chr1_1:70750047-70750066 Msa0040520:intron 15.0%
!!! ATTGTATGTATAATTTTGTT+GGG - chr1_1:70750048-70750067 Msa0040520:intron 15.0%
!! AAAAAAACAACTATTTAAAC+AGG + chr1_1:70752889-70752908 None:intergenic 15.0%
!!! TTTTAACTTTTAACATTACT+AGG - chr1_1:70752970-70752989 Msa0040520:intron 15.0%
!!! TTTAACTTTTAACATTACTA+GGG - chr1_1:70752971-70752990 Msa0040520:intron 15.0%
!!! ATTTGTTTTTCGAATAAAAA+AGG - chr1_1:70755408-70755427 Msa0040520:CDS 15.0%
!!! TTTGTTTTTCGAATAAAAAA+GGG - chr1_1:70755409-70755428 Msa0040520:CDS 15.0%
!!! AAACATGGATTAATCTAAAA+CGG + chr1_1:70749433-70749452 None:intergenic 20.0%
!! TTTCTATATGAATTTGAAAG+TGG + chr1_1:70749680-70749699 None:intergenic 20.0%
!!! TCTATCTGTTTTTTTTTTCA+TGG - chr1_1:70749714-70749733 Msa0040520:intron 20.0%
!! ATCGTAAACATTGTATATTT+AGG - chr1_1:70749805-70749824 Msa0040520:intron 20.0%
!!! TGTTTTCATTAACATTATGT+TGG - chr1_1:70750005-70750024 Msa0040520:intron 20.0%
!! TATAATTCCTCTGATTATAA+TGG + chr1_1:70750196-70750215 None:intergenic 20.0%
!! TATTTCAATTAACTTAAGAG+CGG - chr1_1:70751017-70751036 Msa0040520:intron 20.0%
!!! TAATAGAGGTATAAGAATTA+TGG + chr1_1:70751386-70751405 None:intergenic 20.0%
!! AATTCTTATACCTCTATTAT+CGG - chr1_1:70751387-70751406 Msa0040520:intron 20.0%
!!! ATTATTTTGGACCAAAATTT+TGG + chr1_1:70751957-70751976 None:intergenic 20.0%
!! TTTAACAGAAAATATGTGTT+GGG + chr1_1:70752241-70752260 None:intergenic 20.0%
!! AACAGTATGAATTTCAAATA+TGG - chr1_1:70752337-70752356 Msa0040520:intron 20.0%
!! TTTGAAAGGGAAAAAAATAA+AGG + chr1_1:70752833-70752852 None:intergenic 20.0%
!!! TTATTTTTTTCCCTTTCAAA+TGG - chr1_1:70752833-70752852 Msa0040520:intron 20.0%
!! ATTAACAAAACCATTTGAAA+GGG + chr1_1:70752846-70752865 None:intergenic 20.0%
!! CATACTTAATTTACTTTCAT+TGG - chr1_1:70752918-70752937 Msa0040520:intron 20.0%
!!! TTTCAACATCATTCATATTT+TGG + chr1_1:70753135-70753154 None:intergenic 20.0%
!! AATACCTATATTTAACCTAA+TGG + chr1_1:70753168-70753187 None:intergenic 20.0%
!!! ATATCGTTATTTCTTTGTTT+TGG - chr1_1:70753391-70753410 Msa0040520:intron 20.0%
!! AATACTCAAAATGTACTTAA+AGG - chr1_1:70753796-70753815 Msa0040520:CDS 20.0%
!!! GATAAATGAATTTTGTAGTT+TGG - chr1_1:70755313-70755332 Msa0040520:intron 20.0%
!! TATAGTAATCAAAAGAAATC+AGG + chr1_1:70755454-70755473 None:intergenic 20.0%
!!! ACATAAAATAGTTTGAAACT+TGG - chr1_1:70755855-70755874 Msa0040520:CDS 20.0%
!!! GTTAATTTTGTTGTTTTTCT+TGG - chr1_1:70755902-70755921 Msa0040520:CDS 20.0%
!!! ACCAACTCTTTTTAAAACTT+GGG + chr1_1:70749400-70749419 None:intergenic 25.0%
!!! TACCAACTCTTTTTAAAACT+TGG + chr1_1:70749401-70749420 None:intergenic 25.0%
!!! ATTAGGGTTTTGAAAAAGAA+GGG + chr1_1:70749489-70749508 None:intergenic 25.0%
!!! AATTAGGGTTTTGAAAAAGA+AGG + chr1_1:70749490-70749509 None:intergenic 25.0%
!!! TTTTTTTTCATGGATCGTTA+TGG - chr1_1:70749724-70749743 Msa0040520:intron 25.0%
! GTAAACATTGTATATTTAGG+TGG - chr1_1:70749808-70749827 Msa0040520:intron 25.0%
! TCATCAAATATAGAGAAATC+AGG + chr1_1:70750482-70750501 None:intergenic 25.0%
!! AAAGCATGAATTTAGAACTA+GGG + chr1_1:70750878-70750897 None:intergenic 25.0%
!! TAAAGCATGAATTTAGAACT+AGG + chr1_1:70750879-70750898 None:intergenic 25.0%
!! ACAAAAGAGGAAAGAATTTT+GGG + chr1_1:70751234-70751253 None:intergenic 25.0%
!! TACAAAAGAGGAAAGAATTT+TGG + chr1_1:70751235-70751254 None:intergenic 25.0%
! AAATAAATCAGCATTTCTCT+TGG - chr1_1:70751354-70751373 Msa0040520:intron 25.0%
!! ACTACTCTAAATTTTGAACT+CGG - chr1_1:70751528-70751547 Msa0040520:intron 25.0%
!! ACTGTGAATCAACATTATTT+TGG + chr1_1:70751970-70751989 None:intergenic 25.0%
!!! AATATGACCCTATTTTTGTT+TGG - chr1_1:70752194-70752213 Msa0040520:intron 25.0%
!!! ATATGACCCTATTTTTGTTT+GGG - chr1_1:70752195-70752214 Msa0040520:intron 25.0%
! TTAACAGAAAATATGTGTTG+GGG + chr1_1:70752240-70752259 None:intergenic 25.0%
! GTTTAACAGAAAATATGTGT+TGG + chr1_1:70752242-70752261 None:intergenic 25.0%
! ATGAATTTCAAATATGGTTC+CGG - chr1_1:70752343-70752362 Msa0040520:intron 25.0%
! ATTTGACAACAATAGTATGA+AGG - chr1_1:70752613-70752632 Msa0040520:intron 25.0%
! AACAATAGTATGAAGGAAAA+TGG - chr1_1:70752620-70752639 Msa0040520:intron 25.0%
! ACAATAGTATGAAGGAAAAT+GGG - chr1_1:70752621-70752640 Msa0040520:intron 25.0%
! CATTAACAAAACCATTTGAA+AGG + chr1_1:70752847-70752866 None:intergenic 25.0%
! AAAACAACTATTTAAACAGG+TGG + chr1_1:70752886-70752905 None:intergenic 25.0%
! TAAAACTTTGATTCAAACAG+AGG + chr1_1:70753042-70753061 None:intergenic 25.0%
!! TCATACATCATTCACAATTT+TGG + chr1_1:70753066-70753085 None:intergenic 25.0%
! AATGCCACTAAGTTAAATAT+AGG - chr1_1:70753094-70753113 Msa0040520:intron 25.0%
!! GTTACCTATATTTAACTTAG+TGG + chr1_1:70753101-70753120 None:intergenic 25.0%
!!! TCATATTTTGGCTAAAACTT+CGG + chr1_1:70753123-70753142 None:intergenic 25.0%
! AATGCCATTAGGTTAAATAT+AGG - chr1_1:70753161-70753180 Msa0040520:intron 25.0%
! TCAATCAATTATTTGTGTCT+TGG - chr1_1:70753232-70753251 Msa0040520:intron 25.0%
! TGATCTTATCCTTAATGTTA+TGG - chr1_1:70753276-70753295 Msa0040520:intron 25.0%
! GAACAAATTTCAAATCTAAG+AGG + chr1_1:70753313-70753332 None:intergenic 25.0%
!! TCTGTTTTCAAAAGAAAATC+TGG - chr1_1:70753360-70753379 Msa0040520:intron 25.0%
! AGAAAGAAAAAAAAAAACCC+AGG - chr1_1:70753461-70753480 Msa0040520:intron 25.0%
!! ACTCATTTGAAGTATAATAC+AGG + chr1_1:70753660-70753679 None:intergenic 25.0%
! TCAACATGAAATATCAATAG+CGG - chr1_1:70753685-70753704 Msa0040520:intron 25.0%
! ATAAATCCAATAGAAGAGAA+GGG + chr1_1:70753970-70753989 None:intergenic 25.0%
! AATAAATCCAATAGAAGAGA+AGG + chr1_1:70753971-70753990 None:intergenic 25.0%
! AATGATATATGAAAGACACA+AGG + chr1_1:70754349-70754368 None:intergenic 25.0%
!! GAGAATTTTTACTCAAATGT+TGG + chr1_1:70754376-70754395 None:intergenic 25.0%
!! ATTTTCATTGCATAAGTTTC+TGG - chr1_1:70754669-70754688 Msa0040520:intron 25.0%
!! GCTACTTGATAATTATAACA+AGG + chr1_1:70755253-70755272 None:intergenic 25.0%
!! AAAAAAGGGATCTTTATTTG+AGG - chr1_1:70755423-70755442 Msa0040520:CDS 25.0%
!! TCCATTTGAAACTTAGAAAT+TGG - chr1_1:70755502-70755521 Msa0040520:intron 25.0%
! ACCAATTTCTAAGTTTCAAA+TGG + chr1_1:70755506-70755525 None:intergenic 25.0%
!!! CTCTTTTTAAAACTTGGGTT+GGG + chr1_1:70749395-70749414 None:intergenic 30.0%
!!! ACTCTTTTTAAAACTTGGGT+TGG + chr1_1:70749396-70749415 None:intergenic 30.0%
!!! ACCCAAGTTTTAAAAAGAGT+TGG - chr1_1:70749396-70749415 Msa0040520:three_prime_UTR 30.0%
CAGAAAAAGGAAAGTAAACA+TGG + chr1_1:70749448-70749467 None:intergenic 30.0%
TGTATTTCAAGGTCAGAAAA+AGG + chr1_1:70749461-70749480 None:intergenic 30.0%
!! CAAATTGATGATGAGATGAT+GGG + chr1_1:70749596-70749615 None:intergenic 30.0%
!! ACAAATTGATGATGAGATGA+TGG + chr1_1:70749597-70749616 None:intergenic 30.0%
!! TGAAATTCTATGCTTTTTGC+TGG - chr1_1:70749769-70749788 Msa0040520:intron 30.0%
!! ATGCTTTTTGCTGGTTAATT+TGG - chr1_1:70749778-70749797 Msa0040520:intron 30.0%
!! TGCTTTTTGCTGGTTAATTT+GGG - chr1_1:70749779-70749798 Msa0040520:intron 30.0%
TCCTCTGATTATAATGGTTT+CGG + chr1_1:70750190-70750209 None:intergenic 30.0%
ATAAGCCTATCTTTATGTCA+AGG - chr1_1:70750504-70750523 Msa0040520:intron 30.0%
TAAGCCTATCTTTATGTCAA+GGG - chr1_1:70750505-70750524 Msa0040520:intron 30.0%
! TCAATACCATCTTTTCTTGA+TGG + chr1_1:70750551-70750570 None:intergenic 30.0%
! GCTTATATGTTTGTGTTTTG+TGG - chr1_1:70750703-70750722 Msa0040520:intron 30.0%
ATCGTATCATGTTTGTTTAC+AGG - chr1_1:70750753-70750772 Msa0040520:intron 30.0%
AAAAACTCACAAATCTGTCA+TGG + chr1_1:70750847-70750866 None:intergenic 30.0%
TTTGTTGCTCATATCTATGA+AGG - chr1_1:70750976-70750995 Msa0040520:intron 30.0%
TTCTCAATACGCTATTCAAA+GGG + chr1_1:70751133-70751152 None:intergenic 30.0%
TTGTTTGTGTAAGATTTCAC+TGG + chr1_1:70751159-70751178 None:intergenic 30.0%
! GTTTGAAATATACTCACAAC+AGG + chr1_1:70751209-70751228 None:intergenic 30.0%
! ACATCTGTTCTGAACAAATT+AGG - chr1_1:70751576-70751595 Msa0040520:intron 30.0%
TAATGCCATATTCACCAAAA+CGG + chr1_1:70751613-70751632 None:intergenic 30.0%
TGTTTATACCATTTATCTCG+AGG - chr1_1:70751702-70751721 Msa0040520:intron 30.0%
GTTTATACCATTTATCTCGA+GGG - chr1_1:70751703-70751722 Msa0040520:intron 30.0%
ACATACAAGTTTCATTTGAG+TGG + chr1_1:70751740-70751759 None:intergenic 30.0%
TGAATGAAAAAACCTAGTCT+AGG - chr1_1:70751835-70751854 Msa0040520:intron 30.0%
CAAGAAATTATCATGTCTTG+AGG - chr1_1:70751890-70751909 Msa0040520:intron 30.0%
! TTTTGGACCAAAATTTTGGA+GGG + chr1_1:70751953-70751972 None:intergenic 30.0%
! ATTTTGGACCAAAATTTTGG+AGG + chr1_1:70751954-70751973 None:intergenic 30.0%
AATAACTACACAGAGAAGTT+GGG + chr1_1:70752005-70752024 None:intergenic 30.0%
AAATAACTACACAGAGAAGT+TGG + chr1_1:70752006-70752025 None:intergenic 30.0%
TCTGTGTAGTTATTTGTCAT+GGG - chr1_1:70752011-70752030 Msa0040520:intron 30.0%
!! TCATGGGATATTGATTGTTT+TGG - chr1_1:70752027-70752046 Msa0040520:intron 30.0%
AGTTGAATTGCTGATGTTAA+TGG - chr1_1:70752157-70752176 Msa0040520:intron 30.0%
CAAAAATAGGGTCATATTCA+TGG + chr1_1:70752192-70752211 None:intergenic 30.0%
GTTTAGCCCAAACAAAAATA+GGG + chr1_1:70752204-70752223 None:intergenic 30.0%
! TCATACTGTTAGCTCATTTT+TGG + chr1_1:70752327-70752346 None:intergenic 30.0%
TGAATAACCAAAACTCGTTT+AGG + chr1_1:70752380-70752399 None:intergenic 30.0%
! TTCACAACATAAATTGACTC+TGG + chr1_1:70752433-70752452 None:intergenic 30.0%
CAATGCTTTGTGCTAAATAA+TGG - chr1_1:70752536-70752555 Msa0040520:intron 30.0%
ATGAAGGAAACTTTCTACTT+TGG - chr1_1:70752739-70752758 Msa0040520:intron 30.0%
TTGATGAACAAAATTGTTCC+TGG - chr1_1:70752775-70752794 Msa0040520:intron 30.0%
ATTGTTCCTGGACAAAAAAT+TGG - chr1_1:70752787-70752806 Msa0040520:intron 30.0%
!!! ATCAAACCAATTTTTTGTCC+AGG + chr1_1:70752796-70752815 None:intergenic 30.0%
! TCTTGATAGTTGGATATTGT+TGG - chr1_1:70753000-70753019 Msa0040520:intron 30.0%
ACAGAGGATTATCAAAAACA+TGG + chr1_1:70753026-70753045 None:intergenic 30.0%
! TGAAAATCTGAAATGCCATT+AGG - chr1_1:70753150-70753169 Msa0040520:intron 30.0%
! TCCTTAATGTTATGGTTTGT+AGG - chr1_1:70753284-70753303 Msa0040520:intron 30.0%
TACAACATTTATGGACACAA+TGG + chr1_1:70753512-70753531 None:intergenic 30.0%
TAAACCAGCTACAACATTTA+TGG + chr1_1:70753521-70753540 None:intergenic 30.0%
AAGACTGACAACATATATTG+TGG + chr1_1:70753562-70753581 None:intergenic 30.0%
AATACAAATGCATAACAGTG+TGG + chr1_1:70753716-70753735 None:intergenic 30.0%
CTGTTATGCATTTGTATTGA+AGG - chr1_1:70753718-70753737 Msa0040520:CDS 30.0%
TTTGAGTATTTGAGCTCATA+AGG + chr1_1:70753786-70753805 None:intergenic 30.0%
TACTTAAAGGTCTTCTTTGT+TGG - chr1_1:70753809-70753828 Msa0040520:CDS 30.0%
CTTCTTTACTCTCTTATTCT+GGG - chr1_1:70753851-70753870 Msa0040520:CDS 30.0%
GCTAAAGCACAAGAAAATTA+TGG + chr1_1:70754052-70754071 None:intergenic 30.0%
! TGCTTTAGCATTGAATGATA+AGG - chr1_1:70754063-70754082 Msa0040520:intron 30.0%
! TTTAGCATTGAATGATAAGG+AGG - chr1_1:70754066-70754085 Msa0040520:intron 30.0%
! TTAGCATTGAATGATAAGGA+GGG - chr1_1:70754067-70754086 Msa0040520:intron 30.0%
ACTGTTGAACCTAATAAAAG+TGG - chr1_1:70754268-70754287 Msa0040520:intron 30.0%
TTGAACCTAATAAAAGTGGT+AGG - chr1_1:70754272-70754291 Msa0040520:intron 30.0%
TGAACCTAATAAAAGTGGTA+GGG - chr1_1:70754273-70754292 Msa0040520:intron 30.0%
! TTGCTTCAGTATTTTCCTTT+TGG - chr1_1:70754438-70754457 Msa0040520:intron 30.0%
! TGCTTCAGTATTTTCCTTTT+GGG - chr1_1:70754439-70754458 Msa0040520:intron 30.0%
TTAAATTGTCTTTGCCCAAA+AGG + chr1_1:70754456-70754475 None:intergenic 30.0%
! CTCTTGTCAATATTTTGTCT+TGG + chr1_1:70754580-70754599 None:intergenic 30.0%
CAAGACAAAATATTGACAAG+AGG - chr1_1:70754578-70754597 Msa0040520:intron 30.0%
! CAAATGAATTTTCGAAGCTA+AGG + chr1_1:70754613-70754632 None:intergenic 30.0%
GCTTCGAAAATTCATTTGTT+TGG - chr1_1:70754615-70754634 Msa0040520:intron 30.0%
! TATAAGAAAGCATGCATTGA+GGG + chr1_1:70754650-70754669 None:intergenic 30.0%
! ATATAAGAAAGCATGCATTG+AGG + chr1_1:70754651-70754670 None:intergenic 30.0%
GTAAGATAGTGCTAATAGTT+TGG - chr1_1:70754752-70754771 Msa0040520:CDS 30.0%
!! ATTATAGTTGGTAAGGAACA+TGG - chr1_1:70754834-70754853 Msa0040520:CDS 30.0%
AAAAAAATTCAGCTTCAGCA+AGG + chr1_1:70755061-70755080 None:intergenic 30.0%
!!! GAAGCTGAATTTTTTTTTGC+AGG - chr1_1:70755065-70755084 Msa0040520:CDS 30.0%
CTATGGTATAACTTCAAACT+AGG + chr1_1:70755529-70755548 None:intergenic 30.0%
TTGAAGTTATACCATAGCTT+TGG - chr1_1:70755532-70755551 Msa0040520:intron 30.0%
TCTACTCTATACTGAAATCA+TGG + chr1_1:70755750-70755769 None:intergenic 30.0%
TTGAGAAGTAGAATTACTAC+AGG - chr1_1:70755789-70755808 Msa0040520:CDS 30.0%
! AACTATTTTATGTGCATGCA+CGG + chr1_1:70755848-70755867 None:intergenic 30.0%
ACTTGGAATATGCGATTATT+TGG - chr1_1:70755872-70755891 Msa0040520:CDS 30.0%
GAATATGCGATTATTTGGTT+TGG - chr1_1:70755877-70755896 Msa0040520:CDS 30.0%
!! TTTAAAACTTGGGTTGGGTT+AGG + chr1_1:70749390-70749409 None:intergenic 35.0%
GAATGGGAAAAAGGGAATTA+GGG + chr1_1:70749505-70749524 None:intergenic 35.0%
TCTGATGAATTGATCGAGAT+CGG + chr1_1:70749534-70749553 None:intergenic 35.0%
TTTGTAAGATTGCATACCTG+AGG + chr1_1:70749572-70749591 None:intergenic 35.0%
!! GCTTTTTGCTGGTTAATTTG+GGG - chr1_1:70749780-70749799 Msa0040520:intron 35.0%
!! CTTTTTGCTGGTTAATTTGG+GGG - chr1_1:70749781-70749800 Msa0040520:intron 35.0%
!!! AACAGTGTTTTTTCCCTTCT+TGG - chr1_1:70749906-70749925 Msa0040520:intron 35.0%
! TTTTTCCCTTCTTGGATCAT+TGG - chr1_1:70749914-70749933 Msa0040520:intron 35.0%
AACAACCAATGATCCAAGAA+GGG + chr1_1:70749922-70749941 None:intergenic 35.0%
! TTCTTGGATCATTGGTTGTT+GGG - chr1_1:70749922-70749941 Msa0040520:intron 35.0%
! GTTGGGTTATATGATTTTGC+AGG - chr1_1:70750065-70750084 Msa0040520:intron 35.0%
! CAGGAGTTATGTCTTTTGTT+CGG - chr1_1:70750084-70750103 Msa0040520:intron 35.0%
GCTGAAGACCGTAATTTAAA+CGG - chr1_1:70750116-70750135 Msa0040520:intron 35.0%
GATAACCGCCGTTTAAATTA+CGG + chr1_1:70750127-70750146 None:intergenic 35.0%
GTAATTTAAACGGCGGTTAT+CGG - chr1_1:70750126-70750145 Msa0040520:CDS 35.0%
!! ATCAGTGTTGTTTCCATCAT+AGG + chr1_1:70750156-70750175 None:intergenic 35.0%
! ATGATGGAAACAACACTGAT+AGG - chr1_1:70750156-70750175 Msa0040520:CDS 35.0%
TAACAACTACTGTGACAATC+AGG - chr1_1:70750214-70750233 Msa0040520:CDS 35.0%
TAGCATAGTCAACATTGCAT+TGG + chr1_1:70750271-70750290 None:intergenic 35.0%
AGGATAAGCTTGAAAATTGC+GGG + chr1_1:70750417-70750436 None:intergenic 35.0%
CAGGATAAGCTTGAAAATTG+CGG + chr1_1:70750418-70750437 None:intergenic 35.0%
ATATAGAGAAATCAGGCTTC+AGG + chr1_1:70750475-70750494 None:intergenic 35.0%
TCATCCCTTGACATAAAGAT+AGG + chr1_1:70750512-70750531 None:intergenic 35.0%
AACTCTCCATCAAGAAAAGA+TGG - chr1_1:70750542-70750561 Msa0040520:intron 35.0%
! GTCACATGGATAGTCTTTTT+AGG - chr1_1:70750661-70750680 Msa0040520:intron 35.0%
GTTCTCAATACGCTATTCAA+AGG + chr1_1:70751134-70751153 None:intergenic 35.0%
! ATTTTGCTTTCTTGTCCTAC+TGG - chr1_1:70751180-70751199 Msa0040520:intron 35.0%
TGACAAGCATAGTACAAAAG+AGG + chr1_1:70751247-70751266 None:intergenic 35.0%
GATTCAGCATACATAGTCAT+GGG + chr1_1:70751284-70751303 None:intergenic 35.0%
TGATTCAGCATACATAGTCA+TGG + chr1_1:70751285-70751304 None:intergenic 35.0%
TGACTATGTATGCTGAATCA+CGG - chr1_1:70751285-70751304 Msa0040520:intron 35.0%
AATCACGGTAAAGTTCAAGA+CGG - chr1_1:70751300-70751319 Msa0040520:intron 35.0%
!!! ACTTGATTTGTGTTTTCCAC+AGG - chr1_1:70751452-70751471 Msa0040520:intron 35.0%
! ATTTGTGTTTTCCACAGGAT+TGG - chr1_1:70751457-70751476 Msa0040520:intron 35.0%
TTGTTCAGAACAGATGTAAG+AGG + chr1_1:70751573-70751592 None:intergenic 35.0%
!! AAAGACCGTTTTGGTGAATA+TGG - chr1_1:70751605-70751624 Msa0040520:intron 35.0%
GGTGAATATGGCATTAAACT+TGG - chr1_1:70751617-70751636 Msa0040520:intron 35.0%
CATTAAACTTGGTCAGTGAA+GGG - chr1_1:70751628-70751647 Msa0040520:intron 35.0%
! AGTTTTACCCTCGAGATAAA+TGG + chr1_1:70751713-70751732 None:intergenic 35.0%
! TCTTCAGGTATCCCTTTTAT+TGG - chr1_1:70751781-70751800 Msa0040520:intron 35.0%
GCTAGTCAGAACCAATAAAA+GGG + chr1_1:70751795-70751814 None:intergenic 35.0%
AATTATCATGTCTTGAGGTG+TGG - chr1_1:70751895-70751914 Msa0040520:intron 35.0%
CTCTGTGTAGTTATTTGTCA+TGG - chr1_1:70752010-70752029 Msa0040520:intron 35.0%
TTTGGCATGCATATAATTGC+AGG - chr1_1:70752045-70752064 Msa0040520:intron 35.0%
TCTTCACAAGATTATCATGC+TGG - chr1_1:70752069-70752088 Msa0040520:intron 35.0%
GCTTGTATGATATTCTTAGC+TGG - chr1_1:70752091-70752110 Msa0040520:intron 35.0%
TGTATGATATTCTTAGCTGG+CGG - chr1_1:70752094-70752113 Msa0040520:intron 35.0%
GGTTTAGCCCAAACAAAAAT+AGG + chr1_1:70752205-70752224 None:intergenic 35.0%
AAAATATGTGTTGGGGCATA+GGG + chr1_1:70752233-70752252 None:intergenic 35.0%
CACAAACAACAACACAATGA+GGG + chr1_1:70752264-70752283 None:intergenic 35.0%
!! GTTGTTGTTTGTGCTGATTA+CGG - chr1_1:70752271-70752290 Msa0040520:intron 35.0%
! TTGTTGTCCTAAACGAGTTT+TGG - chr1_1:70752370-70752389 Msa0040520:intron 35.0%
! ATAAATTGACTCTGGTGGAA+AGG + chr1_1:70752425-70752444 None:intergenic 35.0%
! ACAACATAAATTGACTCTGG+TGG + chr1_1:70752430-70752449 None:intergenic 35.0%
AAGATAACACTGTAGCATAG+CGG + chr1_1:70752504-70752523 None:intergenic 35.0%
!! CACAAAGCATTGTCAAATAG+GGG + chr1_1:70752528-70752547 None:intergenic 35.0%
!! GCACAAAGCATTGTCAAATA+GGG + chr1_1:70752529-70752548 None:intergenic 35.0%
!! AGCACAAAGCATTGTCAAAT+AGG + chr1_1:70752530-70752549 None:intergenic 35.0%
TGCTAAATAATGGTGTGTTG+CGG - chr1_1:70752546-70752565 Msa0040520:intron 35.0%
! CAAATAGTAGTGCTATTGAG+TGG + chr1_1:70752598-70752617 None:intergenic 35.0%
! ATGGGTTTTTATTCTGCTTC+TGG - chr1_1:70752639-70752658 Msa0040520:intron 35.0%
! AGGGATTCATTCTTGATAGT+TGG - chr1_1:70752990-70753009 Msa0040520:intron 35.0%
TGTCTGAAAGATTAGATGCT+TGG - chr1_1:70753204-70753223 Msa0040520:intron 35.0%
TAAGATCATCACACAATCAC+AGG + chr1_1:70753264-70753283 None:intergenic 35.0%
GCCTACAAACCATAACATTA+AGG + chr1_1:70753288-70753307 None:intergenic 35.0%
TGTAAATTCAAGCCTCAACT+TGG - chr1_1:70753581-70753600 Msa0040520:intron 35.0%
ATCATTTGGCATTTAGTGGT+TGG - chr1_1:70753634-70753653 Msa0040520:intron 35.0%
ACATGAAATATCAATAGCGG+TGG - chr1_1:70753688-70753707 Msa0040520:intron 35.0%
TAAAGGTCTTCTTTGTTGGA+CGG - chr1_1:70753813-70753832 Msa0040520:CDS 35.0%
CCAGAATAAGAGAGTAAAGA+AGG + chr1_1:70753853-70753872 None:intergenic 35.0%
CCTTCTTTACTCTCTTATTC+TGG - chr1_1:70753850-70753869 Msa0040520:CDS 35.0%
TTACTCTCTTATTCTGGGTT+TGG - chr1_1:70753856-70753875 Msa0040520:CDS 35.0%
TCTTAAATGGATGCAACATG+TGG - chr1_1:70754159-70754178 Msa0040520:CDS 35.0%
GAACCTAATAAAAGTGGTAG+GGG - chr1_1:70754274-70754293 Msa0040520:intron 35.0%
!! ATTCCCCTACCACTTTTATT+AGG + chr1_1:70754280-70754299 None:intergenic 35.0%
ATAAAAGTGGTAGGGGAATA+TGG - chr1_1:70754281-70754300 Msa0040520:intron 35.0%
TAAAAGTGGTAGGGGAATAT+GGG - chr1_1:70754282-70754301 Msa0040520:intron 35.0%
TTCGTAATCAAGTCATCTAG+AGG - chr1_1:70754411-70754430 Msa0040520:intron 35.0%
TCGTAATCAAGTCATCTAGA+GGG - chr1_1:70754412-70754431 Msa0040520:intron 35.0%
TGTAAGTATCCCAATGTACA+TGG - chr1_1:70754545-70754564 Msa0040520:CDS 35.0%
GACAAAATATTGACAAGAGG+TGG - chr1_1:70754581-70754600 Msa0040520:intron 35.0%
AACAATCCTACACAGATTCT+TGG - chr1_1:70754785-70754804 Msa0040520:CDS 35.0%
TGAGTTGCTGCTATTATAGT+TGG - chr1_1:70754822-70754841 Msa0040520:CDS 35.0%
! TGCTGCTATTATAGTTGGTA+AGG - chr1_1:70754827-70754846 Msa0040520:CDS 35.0%
TAAAGCATATGTTGCAACCA+TGG + chr1_1:70754930-70754949 None:intergenic 35.0%
AAGGTCCATGTTCAAAAACT+TGG + chr1_1:70755158-70755177 None:intergenic 35.0%
AGATATTCTTATAGGCAGCA+AGG + chr1_1:70755177-70755196 None:intergenic 35.0%
TTGCTGCCTATAAGAATATC+TGG - chr1_1:70755176-70755195 Msa0040520:CDS 35.0%
CTCTTGCCAGATATTCTTAT+AGG + chr1_1:70755185-70755204 None:intergenic 35.0%
ATTAGGTCAAAATCTTGCAC+AGG - chr1_1:70755360-70755379 Msa0040520:intron 35.0%
CAAATTGTTCAACTGATAGC+TGG + chr1_1:70755393-70755412 None:intergenic 35.0%
TATACAAGATGCCAAAGCTA+TGG + chr1_1:70755546-70755565 None:intergenic 35.0%
CATCTTGTATAACCTTGTCA+GGG - chr1_1:70755555-70755574 Msa0040520:intron 35.0%
AGATGTCTCTCAGCAATTAA+TGG - chr1_1:70755691-70755710 Msa0040520:intron 35.0%
! ACTATTTTATGTGCATGCAC+GGG + chr1_1:70755847-70755866 None:intergenic 35.0%
! GAAGGGTAGCTTGTATTTCA+AGG + chr1_1:70749472-70749491 None:intergenic 40.0%
GGAATGGGAAAAAGGGAATT+AGG + chr1_1:70749506-70749525 None:intergenic 40.0%
GGTGATTGGAATGGGAAAAA+GGG + chr1_1:70749513-70749532 None:intergenic 40.0%
AATTGATCGAGATCGGTGAT+TGG + chr1_1:70749527-70749546 None:intergenic 40.0%
CAACAACCAATGATCCAAGA+AGG + chr1_1:70749923-70749942 None:intergenic 40.0%
! CTTCTTGGATCATTGGTTGT+TGG - chr1_1:70749921-70749940 Msa0040520:intron 40.0%
! TCTTGGATCATTGGTTGTTG+GGG - chr1_1:70749923-70749942 Msa0040520:intron 40.0%
ATTGGTTGTTGGGGAGATTA+TGG - chr1_1:70749932-70749951 Msa0040520:intron 40.0%
GAAGACCGTAATTTAAACGG+CGG - chr1_1:70750119-70750138 Msa0040520:intron 40.0%
!! AGTGTTGTTTCCATCATAGG+TGG + chr1_1:70750153-70750172 None:intergenic 40.0%
GCCGAAACCATTATAATCAG+AGG - chr1_1:70750186-70750205 Msa0040520:CDS 40.0%
TGAGGCAACATTGGCATAAT+TGG + chr1_1:70750300-70750319 None:intergenic 40.0%
TCTCTTCTTCAGAGATGATG+AGG + chr1_1:70750318-70750337 None:intergenic 40.0%
AAATATTCAGCTCCTGTTCG+TGG - chr1_1:70750338-70750357 Msa0040520:intron 40.0%
CTTGAAAATTGCGGGATGAA+GGG + chr1_1:70750409-70750428 None:intergenic 40.0%
TTATAAGCGATGGATCTTGC+AGG + chr1_1:70750437-70750456 None:intergenic 40.0%
TGAGGTAGAGTTATAAGCGA+TGG + chr1_1:70750447-70750466 None:intergenic 40.0%
TGCTTCATGAAACACACTTG+CGG - chr1_1:70750573-70750592 Msa0040520:intron 40.0%
TGTGCATTCCTTCAGAATCT+CGG - chr1_1:70750605-70750624 Msa0040520:intron 40.0%
GATTCACATTGCTAGTCACA+TGG - chr1_1:70750647-70750666 Msa0040520:intron 40.0%
!!! TGTGCCACCGTTTTTTTGTT+CGG - chr1_1:70750807-70750826 Msa0040520:intron 40.0%
AATACGCTATTCAAAGGGCA+TGG + chr1_1:70751128-70751147 None:intergenic 40.0%
ATCACGGTAAAGTTCAAGAC+GGG - chr1_1:70751301-70751320 Msa0040520:intron 40.0%
CGAGTATCAACCGATAATAG+AGG + chr1_1:70751400-70751419 None:intergenic 40.0%
! GGTTGATACTCGTCAAACTT+TGG - chr1_1:70751408-70751427 Msa0040520:intron 40.0%
TACTGTTCAAACCAATCCTG+TGG + chr1_1:70751471-70751490 None:intergenic 40.0%
GGTTTGAACAGTATCGTGAA+CGG - chr1_1:70751478-70751497 Msa0040520:intron 40.0%
GTTTGAACAGTATCGTGAAC+GGG - chr1_1:70751479-70751498 Msa0040520:intron 40.0%
! ACAGATGTAAGAGGTGCATA+TGG + chr1_1:70751564-70751583 None:intergenic 40.0%
! AGGTCTTTCAAAGACCGTTT+TGG - chr1_1:70751596-70751615 Msa0040520:intron 40.0%
GCATTAAACTTGGTCAGTGA+AGG - chr1_1:70751627-70751646 Msa0040520:intron 40.0%
! TTGTATGTGATGTTCTGAGC+TGG - chr1_1:70751752-70751771 Msa0040520:intron 40.0%
! GGCTAGTCAGAACCAATAAA+AGG + chr1_1:70751796-70751815 None:intergenic 40.0%
CAAGTCACTCGTTAGATAAC+TGG + chr1_1:70751817-70751836 None:intergenic 40.0%
CTAGTCTAGGAAACAGTACA+CGG - chr1_1:70751848-70751867 Msa0040520:intron 40.0%
TAGTCTAGGAAACAGTACAC+GGG - chr1_1:70751849-70751868 Msa0040520:intron 40.0%
GAAAATATGTGTTGGGGCAT+AGG + chr1_1:70752234-70752253 None:intergenic 40.0%
GCACAAACAACAACACAATG+AGG + chr1_1:70752265-70752284 None:intergenic 40.0%
!! TTGTTTGTGCTGATTACGGT+CGG - chr1_1:70752275-70752294 Msa0040520:intron 40.0%
! CGTTTAGGACAACAATAGAC+CGG + chr1_1:70752365-70752384 None:intergenic 40.0%
TGAAGCAGAGTTGTCAATTG+TGG - chr1_1:70752449-70752468 Msa0040520:intron 40.0%
AAAACACAAACACAGCCATC+AGG + chr1_1:70752704-70752723 None:intergenic 40.0%
! CAGGTGGAAAGTGTAAGAAA+TGG + chr1_1:70752870-70752889 None:intergenic 40.0%
CAACAACAGATGCATTTCCT+GGG + chr1_1:70753481-70753500 None:intergenic 40.0%
TCAACAACAGATGCATTTCC+TGG + chr1_1:70753482-70753501 None:intergenic 40.0%
GTGTCCATAAATGTTGTAGC+TGG - chr1_1:70753514-70753533 Msa0040520:intron 40.0%
TTCAAGCCTCAACTTGGAAA+TGG - chr1_1:70753587-70753606 Msa0040520:intron 40.0%
CCAAATGATGAGGAGATGAA+AGG + chr1_1:70753623-70753642 None:intergenic 40.0%
CCTTTCATCTCCTCATCATT+TGG - chr1_1:70753620-70753639 Msa0040520:intron 40.0%
CCACTAAATGCCAAATGATG+AGG + chr1_1:70753633-70753652 None:intergenic 40.0%
CCTCATCATTTGGCATTTAG+TGG - chr1_1:70753630-70753649 Msa0040520:intron 40.0%
GAGAAGGGTAGAGATAAGAA+GGG + chr1_1:70753955-70753974 None:intergenic 40.0%
AGAGAAGGGTAGAGATAAGA+AGG + chr1_1:70753956-70753975 None:intergenic 40.0%
TCTCTACCCTTCTCTTCTAT+TGG - chr1_1:70753961-70753980 Msa0040520:intron 40.0%
TGAACCTTCAATGAACTCAC+TGG - chr1_1:70754001-70754020 Msa0040520:intron 40.0%
GTTTCCAGTGAGTTCATTGA+AGG + chr1_1:70754008-70754027 None:intergenic 40.0%
CATTGAATGATAAGGAGGGT+GGG - chr1_1:70754071-70754090 Msa0040520:intron 40.0%
AGGGCGATCTGTATCTTAAA+TGG - chr1_1:70754146-70754165 Msa0040520:CDS 40.0%
! AACCTCCTGATCTGAAATCA+GGG + chr1_1:70754207-70754226 None:intergenic 40.0%
! AAACCTCCTGATCTGAAATC+AGG + chr1_1:70754208-70754227 None:intergenic 40.0%
! ATCAGGAGGTTTTCTTGTGT+CGG - chr1_1:70754216-70754235 Msa0040520:CDS 40.0%
AAAAGTGGTAGGGGAATATG+GGG - chr1_1:70754283-70754302 Msa0040520:intron 40.0%
TCAAAATCCAACCACTGTGT+GGG + chr1_1:70754490-70754509 None:intergenic 40.0%
TTGAGTTATTCTGCAGTGTG+TGG - chr1_1:70754506-70754525 Msa0040520:CDS 40.0%
ATATTGACAAGAGGTGGCAT+TGG - chr1_1:70754587-70754606 Msa0040520:intron 40.0%
ACTATGCCAAGAATCTGTGT+AGG + chr1_1:70754794-70754813 None:intergenic 40.0%
ATAGCTGATATGATCAGCCA+TGG - chr1_1:70754910-70754929 Msa0040520:CDS 40.0%
! TCTTTTTGTGTTGCCTCGAA+TGG - chr1_1:70754965-70754984 Msa0040520:CDS 40.0%
GTACACAAACTAACCATTCG+AGG + chr1_1:70754981-70755000 None:intergenic 40.0%
TGTTCAAAAACTTGGCAGCA+AGG + chr1_1:70755150-70755169 None:intergenic 40.0%
! TGCTGCCAAGTTTTTGAACA+TGG - chr1_1:70755150-70755169 Msa0040520:CDS 40.0%
GAATATCTGGCAAGAGTTTC+AGG - chr1_1:70755189-70755208 Msa0040520:CDS 40.0%
TGTACCTTGAAGAACAGATG+GGG + chr1_1:70755218-70755237 None:intergenic 40.0%
GTGTACCTTGAAGAACAGAT+GGG + chr1_1:70755219-70755238 None:intergenic 40.0%
AGTGTACCTTGAAGAACAGA+TGG + chr1_1:70755220-70755239 None:intergenic 40.0%
GCATCTTGTATAACCTTGTC+AGG - chr1_1:70755554-70755573 Msa0040520:intron 40.0%
TTCAAGACAATTCCCTGACA+AGG + chr1_1:70755570-70755589 None:intergenic 40.0%
!! TCAGTGTTGTTTCTGGAGTT+TGG - chr1_1:70755815-70755834 Msa0040520:CDS 40.0%
!!! GTTGTTTTTCTTGGCGTCAT+TGG - chr1_1:70755911-70755930 Msa0040520:CDS 40.0%
CGGTGATTGGAATGGGAAAA+AGG + chr1_1:70749514-70749533 None:intergenic 45.0%
TCGAGATCGGTGATTGGAAT+GGG + chr1_1:70749521-70749540 None:intergenic 45.0%
ATCGAGATCGGTGATTGGAA+TGG + chr1_1:70749522-70749541 None:intergenic 45.0%
TGTGACAATCAGGCCAACTT+TGG - chr1_1:70750224-70750243 Msa0040520:CDS 45.0%
CAGAGATGATGAGGCAACAT+TGG + chr1_1:70750309-70750328 None:intergenic 45.0%
ATACTGTCATAGACTGTGGC+TGG + chr1_1:70750386-70750405 None:intergenic 45.0%
AGGGATACTGTCATAGACTG+TGG + chr1_1:70750390-70750409 None:intergenic 45.0%
GCTTGAAAATTGCGGGATGA+AGG + chr1_1:70750410-70750429 None:intergenic 45.0%
TCCTTCAGAATCTCGGAACA+AGG - chr1_1:70750612-70750631 Msa0040520:intron 45.0%
TACAGGCCTCAAACTACCAT+TGG - chr1_1:70750770-70750789 Msa0040520:intron 45.0%
ACAGGCCTCAAACTACCATT+GGG - chr1_1:70750771-70750790 Msa0040520:intron 45.0%
GATGTCCCAATGGTAGTTTG+AGG + chr1_1:70750779-70750798 None:intergenic 45.0%
AACTACCATTGGGACATCCA+TGG - chr1_1:70750781-70750800 Msa0040520:intron 45.0%
ATCGCCGAACAAAAAAACGG+TGG + chr1_1:70750814-70750833 None:intergenic 45.0%
GCGATCGCCGAACAAAAAAA+CGG + chr1_1:70750817-70750836 None:intergenic 45.0%
! ACTGCTGCTCTTTTTCTTGC+TGG - chr1_1:70751086-70751105 Msa0040520:intron 45.0%
! CTGCTGCTCTTTTTCTTGCT+GGG - chr1_1:70751087-70751106 Msa0040520:intron 45.0%
ACTCACAACAGGAAACCAGT+AGG + chr1_1:70751198-70751217 None:intergenic 45.0%
CGTGTACTGTTTCCTAGACT+AGG + chr1_1:70751850-70751869 None:intergenic 45.0%
AGTCTAGGAAACAGTACACG+GGG - chr1_1:70751850-70751869 Msa0040520:intron 45.0%
!! AAATTTTGGAGGGCCACCAA+GGG + chr1_1:70751943-70751962 None:intergenic 45.0%
!! AAAATTTTGGAGGGCCACCA+AGG + chr1_1:70751944-70751963 None:intergenic 45.0%
!! TTGGTGGCCCTCCAAAATTT+TGG - chr1_1:70751943-70751962 Msa0040520:intron 45.0%
! GCGGATTGATATGCTGTTCT+TGG - chr1_1:70752113-70752132 Msa0040520:intron 45.0%
AGATTGTCGTCAGCCATGTT+TGG + chr1_1:70752301-70752320 None:intergenic 45.0%
AGTTGTCAATTGTGGATCGC+AGG - chr1_1:70752457-70752476 Msa0040520:intron 45.0%
TGTGAGCCATTTCCAAGTTG+AGG + chr1_1:70753596-70753615 None:intergenic 45.0%
GCATTGAATGATAAGGAGGG+TGG - chr1_1:70754070-70754089 Msa0040520:intron 45.0%
AATCGCTTTCCACCTCAGAA+AGG - chr1_1:70754126-70754145 Msa0040520:intron 45.0%
ATCGCTTTCCACCTCAGAAA+GGG - chr1_1:70754127-70754146 Msa0040520:intron 45.0%
! ACCTCCTGATCTGAAATCAG+GGG + chr1_1:70754206-70754225 None:intergenic 45.0%
CTCAAAATCCAACCACTGTG+TGG + chr1_1:70754491-70754510 None:intergenic 45.0%
GTATCCCAATGTACATGGCA+AGG - chr1_1:70754550-70754569 Msa0040520:CDS 45.0%
AGAGCCTTGCCATGTACATT+GGG + chr1_1:70754557-70754576 None:intergenic 45.0%
AAACCCCATCAAATTGCTGC+TGG - chr1_1:70755115-70755134 Msa0040520:CDS 45.0%
AGCTCCAGCAGCAATTTGAT+GGG + chr1_1:70755122-70755141 None:intergenic 45.0%
!! CAGGTCATCAGTGTTGTTTC+TGG - chr1_1:70755808-70755827 Msa0040520:CDS 45.0%
! TTTTATGTGCATGCACGGGT+AGG + chr1_1:70755843-70755862 None:intergenic 45.0%
!!! TTTTTTAAAAAAAAAAATGA+AGG - chr1_1:70752723-70752742 Msa0040520:intron 5.0%
GGTTATCGGTCCACCTATGA+TGG - chr1_1:70750140-70750159 Msa0040520:CDS 50.0%
CAGGCCAACTTTGGCTACTA+TGG - chr1_1:70750233-70750252 Msa0040520:CDS 50.0%
GCCAACTTTGGCTACTATGG+TGG - chr1_1:70750236-70750255 Msa0040520:CDS 50.0%
GCCACCATAGTAGCCAAAGT+TGG + chr1_1:70750240-70750259 None:intergenic 50.0%
!! TTCTGGCTTTCTCCACGAAC+AGG + chr1_1:70750353-70750372 None:intergenic 50.0%
TGGCTGGAAGAGTGAACTTC+TGG + chr1_1:70750370-70750389 None:intergenic 50.0%
! GCCTTGTTCCGAGATTCTGA+AGG + chr1_1:70750616-70750635 None:intergenic 50.0%
CAGAACCATGGATGTCCCAA+TGG + chr1_1:70750789-70750808 None:intergenic 50.0%
AAAACGGTGGCACAGAACCA+TGG + chr1_1:70750801-70750820 None:intergenic 50.0%
TGATTACGGTCGGCCAAACA+TGG - chr1_1:70752285-70752304 Msa0040520:intron 50.0%
TTGACTCTGGTGGAAAGGAG+TGG + chr1_1:70752420-70752439 None:intergenic 50.0%
!! GTTGGACGGATTGTGAACTG+TGG - chr1_1:70753827-70753846 Msa0040520:CDS 50.0%
GATACAGATCGCCCTTTCTG+AGG + chr1_1:70754141-70754160 None:intergenic 50.0%
ACCTCCCCTGATTTCAGATC+AGG - chr1_1:70754199-70754218 Msa0040520:CDS 50.0%
! TCCTGATCTGAAATCAGGGG+AGG + chr1_1:70754203-70754222 None:intergenic 50.0%
TCCCCTGATTTCAGATCAGG+AGG - chr1_1:70754202-70754221 Msa0040520:CDS 50.0%
GGTGTTCTGTTGCCACGAAA+CGG - chr1_1:70754237-70754256 Msa0040520:CDS 50.0%
CAGTAGAGAGATCCGTTTCG+TGG + chr1_1:70754252-70754271 None:intergenic 50.0%
TTTCTCCTATGCCCACACAG+TGG - chr1_1:70754476-70754495 Msa0040520:intron 50.0%
GAGAGCCTTGCCATGTACAT+TGG + chr1_1:70754558-70754577 None:intergenic 50.0%
GCTCCAGCAGCAATTTGATG+GGG + chr1_1:70755121-70755140 None:intergenic 50.0%
CAGCTCCAGCAGCAATTTGA+TGG + chr1_1:70755123-70755142 None:intergenic 50.0%
GCAACCCCATCTGTTCTTCA+AGG - chr1_1:70755211-70755230 Msa0040520:CDS 50.0%
ATCCACTTCGCTGCTTCCTC+AGG - chr1_1:70749553-70749572 Msa0040520:three_prime_UTR 55.0%
TACCTGAGGAAGCAGCGAAG+TGG + chr1_1:70749558-70749577 None:intergenic 55.0%
! ATCAGGCTTCAGGCTAGCTG+AGG + chr1_1:70750465-70750484 None:intergenic 55.0%
GTATCGTGAACGGGTGCTTG+AGG - chr1_1:70751488-70751507 Msa0040520:intron 55.0%
! CTGAGCTGGTGATGCTCTTC+AGG - chr1_1:70751766-70751785 Msa0040520:intron 55.0%
GTGTGGAGATCTTGTCGACG+AGG - chr1_1:70751912-70751931 Msa0040520:intron 55.0%
TGTCGACGAGGAAGATCCCT+TGG - chr1_1:70751924-70751943 Msa0040520:intron 55.0%
ATAGACCCTCTGCTGCCTGA+TGG - chr1_1:70752686-70752705 Msa0040520:intron 55.0%
! ACAGATCGCCCTTTCTGAGG+TGG + chr1_1:70754138-70754157 None:intergenic 55.0%
TCCTATGCCCACACAGTGGT+TGG - chr1_1:70754480-70754499 Msa0040520:intron 55.0%
TCCAACCACTGTGTGGGCAT+AGG + chr1_1:70754484-70754503 None:intergenic 55.0%
TCCAGACCCAACTCTGCTGT+GGG + chr1_1:70754707-70754726 None:intergenic 55.0%
TTCCAGACCCAACTCTGCTG+TGG + chr1_1:70754708-70754727 None:intergenic 55.0%
GCAGGCTTCGTAGCTCTCTT+TGG - chr1_1:70755083-70755102 Msa0040520:CDS 55.0%
CGACGAGGAAGATCCCTTGG+TGG - chr1_1:70751927-70751946 Msa0040520:intron 60.0%
GTGTTGGGGCATAGGGCTCT+TGG + chr1_1:70752226-70752245 None:intergenic 60.0%
CACAGCCATCAGGCAGCAGA+GGG + chr1_1:70752694-70752713 None:intergenic 60.0%
ACACAGCCATCAGGCAGCAG+AGG + chr1_1:70752695-70752714 None:intergenic 60.0%
AGAGCCTCCCACAGCAGAGT+TGG - chr1_1:70754697-70754716 Msa0040520:intron 60.0%
GAGCCTCCCACAGCAGAGTT+GGG - chr1_1:70754698-70754717 Msa0040520:intron 60.0%
AGACCCAACTCTGCTGTGGG+AGG + chr1_1:70754704-70754723 None:intergenic 60.0%
TCCCACAGCAGAGTTGGGTC+TGG - chr1_1:70754703-70754722 Msa0040520:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70749385 70755968 70749385 ID=Msa0040520;Name=Msa0040520
chr1_1 mRNA 70749385 70755968 70749385 ID=Msa0040520-mRNA-1;Parent=Msa0040520;Name=Msa0040520-mRNA-1;_AED=0.37;_eAED=0.37;_QI=37|0.71|0.87|0.87|0.85|0.87|8|244|440
chr1_1 exon 70749385 70749660 70749385 ID=Msa0040520-mRNA-1:exon:23355;Parent=Msa0040520-mRNA-1
chr1_1 exon 70750121 70750266 70750121 ID=Msa0040520-mRNA-1:exon:23354;Parent=Msa0040520-mRNA-1
chr1_1 exon 70753704 70753879 70753704 ID=Msa0040520-mRNA-1:exon:23353;Parent=Msa0040520-mRNA-1
chr1_1 exon 70754142 70754276 70754142 ID=Msa0040520-mRNA-1:exon:23352;Parent=Msa0040520-mRNA-1
chr1_1 exon 70754497 70754578 70754497 ID=Msa0040520-mRNA-1:exon:23351;Parent=Msa0040520-mRNA-1
chr1_1 exon 70754711 70755266 70754711 ID=Msa0040520-mRNA-1:exon:23350;Parent=Msa0040520-mRNA-1
chr1_1 exon 70755400 70755442 70755400 ID=Msa0040520-mRNA-1:exon:23349;Parent=Msa0040520-mRNA-1
chr1_1 exon 70755779 70755968 70755779 ID=Msa0040520-mRNA-1:exon:23348;Parent=Msa0040520-mRNA-1
chr1_1 five_prime_UTR 70755932 70755968 70755932 ID=Msa0040520-mRNA-1:five_prime_utr;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70755779 70755931 70755779 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70755400 70755442 70755400 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70754711 70755266 70754711 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70754497 70754578 70754497 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70754142 70754276 70754142 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70753704 70753879 70753704 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70750121 70750266 70750121 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 CDS 70749629 70749660 70749629 ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1
chr1_1 three_prime_UTR 70749385 70749628 70749385 ID=Msa0040520-mRNA-1:three_prime_utr;Parent=Msa0040520-mRNA-1
Gene Sequence

>Msa0040520

ATGCGTTGCCGTTTTAGATTAATCCATGTTTACTTTCCTTTTTCTGACCTTGAAATACAAGCTACCCTTCTTTTTCAAAACCCTAATTCCCTTTTTCCCATTCCAATCACCGATCTCGATCAATTCATCAGATCCACTTCGCTGCTTCCTCAGTGTTTTTTCCCTTCTTGGATCATTGGTTGTTGGGGAGATTATGGAGTTATGTCTTTTGTTCGGAATTTTCAAGCTGAAGACCGTAATTTAAACGGCGGTTATCGGTCCACCTATGATGGAAACAACACTGATAGGAAAAGAAGCCGAAACCATTATAATCAGAGGAATTATAACAACTACTGTGACAATCAGGCCAACTTTGGCTACTATGGTGGCAACTTCAACCAATGCAATGTTGACTATGCTAATTATGCCAATTATGCCAATGTTGCCTCATCATCTCTGAAGAAGAGAAAATATTCAGCTCCTGTTCGTGGAGAAAGCCAGAAGTTCACTCTTCCAGCCACAGTCTATGACAGTATCCCTTCATCCCGCAATTTTCAAGCTTATCCTGCAAGATCCATCGCTTATAACTCTACCTCAGCTAGCCTGAAGCCTGATTTCTCTATATTTGATGATGATAAGCCTATCTTTATGTCAAGGGATGATATTGATAGAAACTCTCCATCAAGAAAAGATGGTATTGATGTGCTTCATGAAACACACTTGCGGTATTCTTATTGTGCATTCCTTCAGAATCTCGGAACAAGGCTTGAGATGCCTCAAACTACCATTGGGACATCCATGGTTCTGTGCCACCGTTTTTTTGTTCGGCGATCGCATGCTTGCCATGACAGATTTTTGATAGCTACTGCTGCTCTTTTTCTTGCTGGGAAGTCTGAAGAATCTCCATGCCCTTTGAATAGCGTATTGAGAACATCCAGTGAAATCTTACACAAACAAGATTTTGCTTTCTTGTCCTACTGGTTTCCTGTTGATTGGTTTGAACAGTATCGTGAACGGGTGCTTGAGGCTGAACAGTTGATACTCACTACTCTAAATTTTGAACTCGGTGTAAAACATCCATATGCACCTCTTACATCTGTTCTGAACAAATTAGGTCTTTCAAAGACCGTTTTGGTGAATATGGCATTAAACTTGGTCAGTGAAGGGCTTCGTAGCTCTCTTTGGCTTCAATTTAAACCCCATCAAATTGCTGCTGGAGCTGCATACCTTGCTGCCAAGTTTTTGAACATGGACCTTGCTGCCTATAAGAATATCTGGCAAGAGTTTCAGGCAACCCCATCTGTTCTTCAAGATGTCTCTCAGCAATTAATGGAGCTCTTTTAG

Protein sequence

>Msa0040520

MRCRFRLIHVYFPFSDLEIQATLLFQNPNSLFPIPITDLDQFIRSTSLLPQCFFPSWIIGCWGDYGVMSFVRNFQAEDRNLNGGYRSTYDGNNTDRKRSRNHYNQRNYNNYCDNQANFGYYGGNFNQCNVDYANYANYANVASSSLKKRKYSAPVRGESQKFTLPATVYDSIPSSRNFQAYPARSIAYNSTSASLKPDFSIFDDDKPIFMSRDDIDRNSPSRKDGIDVLHETHLRYSYCAFLQNLGTRLEMPQTTIGTSMVLCHRFFVRRSHACHDRFLIATAALFLAGKSEESPCPLNSVLRTSSEILHKQDFAFLSYWFPVDWFEQYRERVLEAEQLILTTLNFELGVKHPYAPLTSVLNKLGLSKTVLVNMALNLVSEGLRSSLWLQFKPHQIAAGAAYLAAKFLNMDLAAYKNIWQEFQATPSVLQDVSQQLMELF*