Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040520 | sp|Q2RAC5|CCT13_ORYSJ | 50.855 | 234 | 113 | 1 | 209 | 440 | 38 | 271 | 2.33e-75 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0040520 | -0.812133 | 4.942006e-51 | -8.615850e-47 |
| Msa0012460 | Msa0040520 | -0.802092 | 6.610072e-49 | -8.615850e-47 |
| Msa0040520 | Msa0043680 | -0.809675 | 1.683193e-50 | -8.615850e-47 |
| Msa0040520 | Msa0077910 | -0.800323 | 1.520931e-48 | -8.615850e-47 |
| Msa0040520 | Msa0122210 | -0.822916 | 1.833265e-53 | -8.615850e-47 |
| Msa0040520 | Msa0125800 | -0.801642 | 8.178040e-49 | -8.615850e-47 |
| Msa0040520 | Msa0135300 | 0.945783 | 1.597728e-104 | -8.615850e-47 |
| Msa0040520 | Msa0137030 | -0.802914 | 4.474078e-49 | -8.615850e-47 |
| Msa0040520 | Msa0146470 | -0.804623 | 1.976301e-49 | -8.615850e-47 |
| Msa0040520 | Msa0155550 | -0.801545 | 8.561214e-49 | -8.615850e-47 |
| Msa0040520 | Msa0157350 | -0.809983 | 1.444931e-50 | -8.615850e-47 |
| Msa0040520 | Msa0157780 | 0.805085 | 1.582467e-49 | -8.615850e-47 |
| Msa0040520 | Msa0170440 | -0.801969 | 7.005185e-49 | -8.615850e-47 |
| Msa0040520 | Msa0179800 | 0.941298 | 5.303725e-101 | -8.615850e-47 |
| Msa0040520 | Msa0182270 | -0.806293 | 8.827005e-50 | -8.615850e-47 |
| Msa0040520 | Msa0259330 | -0.808157 | 3.555048e-50 | -8.615850e-47 |
| Msa0040520 | Msa0261440 | -0.816804 | 4.577419e-52 | -8.615850e-47 |
| Msa0040520 | Msa0280120 | -0.803317 | 3.693276e-49 | -8.615850e-47 |
| Msa0040520 | Msa0307460 | -0.837044 | 6.555865e-57 | -8.615850e-47 |
| Msa0040520 | Msa0343920 | -0.821993 | 3.003819e-53 | -8.615850e-47 |
| Msa0040520 | Msa0379110 | -0.829153 | 6.034730e-55 | -8.615850e-47 |
| Msa0040520 | Msa0417630 | -0.824643 | 7.222387e-54 | -8.615850e-47 |
| Msa0040520 | Msa0444340 | -0.825636 | 4.208400e-54 | -8.615850e-47 |
| Msa0040520 | Msa0519200 | -0.811105 | 8.268866e-51 | -8.615850e-47 |
| Msa0040520 | Msa0577110 | -0.835424 | 1.691377e-56 | -8.615850e-47 |
| Msa0040520 | Msa0598080 | -0.816969 | 4.203168e-52 | -8.615850e-47 |
| Msa0040520 | Msa0646710 | -0.827973 | 1.163822e-54 | -8.615850e-47 |
| Msa0040520 | Msa0647110 | -0.811230 | 7.769450e-51 | -8.615850e-47 |
| Msa0040520 | Msa0647460 | -0.805844 | 1.097154e-49 | -8.615850e-47 |
| Msa0040520 | Msa0690500 | -0.812898 | 3.363255e-51 | -8.615850e-47 |
| Msa0040520 | Msa0704720 | -0.834639 | 2.667585e-56 | -8.615850e-47 |
| Msa0040520 | Msa0716670 | -0.802617 | 5.153951e-49 | -8.615850e-47 |
| Msa0040520 | Msa0717090 | -0.824497 | 7.816772e-54 | -8.615850e-47 |
| Msa0040520 | Msa0720380 | -0.813108 | 3.024465e-51 | -8.615850e-47 |
| Msa0040520 | Msa0804110 | -0.809557 | 1.784407e-50 | -8.615850e-47 |
| Msa0040520 | Msa0842660 | -0.802120 | 6.522112e-49 | -8.615850e-47 |
| Msa0040520 | Msa0900320 | -0.844461 | 7.453786e-59 | -8.615850e-47 |
| Msa0040520 | Msa0926860 | -0.806221 | 9.138135e-50 | -8.615850e-47 |
| Msa0040520 | Msa0965960 | -0.832534 | 8.950016e-56 | -8.615850e-47 |
| Msa0040520 | Msa0972730 | -0.836130 | 1.120870e-56 | -8.615850e-47 |
| Msa0040520 | Msa0992570 | -0.808619 | 2.833326e-50 | -8.615850e-47 |
| Msa0040520 | Msa0992590 | -0.810170 | 1.316665e-50 | -8.615850e-47 |
| Msa0040520 | Msa1022310 | -0.811768 | 5.935292e-51 | -8.615850e-47 |
| Msa0040520 | Msa1045440 | -0.812338 | 4.457302e-51 | -8.615850e-47 |
| Msa0040520 | Msa1050240 | -0.811542 | 6.646128e-51 | -8.615850e-47 |
| Msa0040520 | Msa1061310 | -0.812163 | 4.866848e-51 | -8.615850e-47 |
| Msa0040520 | Msa1085590 | 0.804837 | 1.783234e-49 | -8.615850e-47 |
| Msa0040520 | Msa1149960 | -0.807312 | 5.374347e-50 | -8.615850e-47 |
| Msa0040520 | Msa1208750 | -0.806958 | 6.387909e-50 | -8.615850e-47 |
| Msa0040520 | Msa1215530 | -0.839448 | 1.574894e-57 | -8.615850e-47 |
| Msa0040520 | Msa1222390 | -0.816712 | 4.799877e-52 | -8.615850e-47 |
| Msa0040520 | Msa1228950 | -0.812045 | 5.165289e-51 | -8.615850e-47 |
| Msa0040520 | Msa1271600 | -0.806008 | 1.013131e-49 | -8.615850e-47 |
| Msa0040520 | Msa1286910 | -0.825826 | 3.792584e-54 | -8.615850e-47 |
| Msa0040520 | Msa1339250 | -0.806374 | 8.485041e-50 | -8.615850e-47 |
| Msa0040520 | Msa1361840 | -0.815227 | 1.029737e-51 | -8.615850e-47 |
| Msa0040520 | Msa1367810 | -0.802847 | 4.620169e-49 | -8.615850e-47 |
| Msa0040520 | Msa1404790 | -0.833428 | 5.363692e-56 | -8.615850e-47 |
| Msa0040520 | Msa1422490 | -0.803930 | 2.756161e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040520 | MtrunA17_Chr1g0205721 | 94.785 | 326 | 10 | 3 | 68 | 389 | 1 | 323 | 0.0 | 594 |
| Msa0040520 | MtrunA17_Chr4g0043411 | 51.709 | 234 | 111 | 1 | 209 | 440 | 35 | 268 | 1.17e-78 | 255 |
| Msa0040520 | MtrunA17_Chr2g0311581 | 50.000 | 234 | 115 | 1 | 209 | 440 | 34 | 267 | 1.47e-74 | 245 |
| Msa0040520 | MtrunA17_Chr7g0259201 | 44.318 | 176 | 98 | 0 | 209 | 384 | 5 | 180 | 1.48e-48 | 171 |
| Msa0040520 | MtrunA17_Chr5g0422971 | 32.174 | 230 | 142 | 4 | 218 | 440 | 18 | 240 | 2.36e-25 | 107 |
| Msa0040520 | MtrunA17_Chr5g0397381 | 31.304 | 230 | 144 | 4 | 218 | 440 | 18 | 240 | 4.61e-24 | 103 |
| Msa0040520 | MtrunA17_Chr7g0259191 | 44.068 | 118 | 63 | 2 | 326 | 440 | 6 | 123 | 2.89e-16 | 80.1 |
| Msa0040520 | MtrunA17_Chr7g0235101 | 22.318 | 233 | 165 | 3 | 209 | 440 | 14 | 231 | 5.99e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040520 | AT4G19600.1 | 50.000 | 234 | 115 | 1 | 209 | 440 | 34 | 267 | 1.75e-75 | 246 |
| Msa0040520 | AT5G45190.1 | 50.427 | 234 | 114 | 1 | 209 | 440 | 34 | 267 | 1.39e-74 | 244 |
| Msa0040520 | AT5G45190.2 | 47.347 | 245 | 116 | 2 | 209 | 440 | 34 | 278 | 3.55e-69 | 230 |
| Msa0040520 | AT4G19560.1 | 48.101 | 237 | 117 | 3 | 207 | 440 | 30 | 263 | 2.31e-62 | 209 |
| Msa0040520 | AT1G27630.1 | 42.241 | 232 | 133 | 1 | 209 | 440 | 35 | 265 | 3.93e-58 | 194 |
| Msa0040520 | AT1G27630.4 | 42.793 | 222 | 126 | 1 | 209 | 430 | 35 | 255 | 4.83e-56 | 187 |
| Msa0040520 | AT1G35440.1 | 37.872 | 235 | 133 | 4 | 211 | 440 | 10 | 236 | 1.12e-43 | 154 |
| Msa0040520 | AT5G45190.3 | 46.835 | 158 | 82 | 1 | 285 | 440 | 1 | 158 | 2.55e-39 | 147 |
| Msa0040520 | AT1G27630.6 | 38.674 | 181 | 110 | 1 | 260 | 440 | 1 | 180 | 6.32e-36 | 132 |
| Msa0040520 | AT1G27630.3 | 38.674 | 181 | 110 | 1 | 260 | 440 | 1 | 180 | 6.32e-36 | 132 |
| Msa0040520 | AT1G27630.5 | 38.674 | 181 | 110 | 1 | 260 | 440 | 1 | 180 | 6.32e-36 | 132 |
| Msa0040520 | AT1G27630.2 | 38.674 | 181 | 110 | 1 | 260 | 440 | 1 | 180 | 6.32e-36 | 132 |
| Msa0040520 | AT4G19560.2 | 42.683 | 164 | 88 | 3 | 280 | 440 | 31 | 191 | 2.42e-28 | 115 |
| Msa0040520 | AT2G26430.4 | 29.289 | 239 | 155 | 4 | 209 | 440 | 9 | 240 | 1.73e-23 | 100 |
| Msa0040520 | AT2G26430.1 | 29.437 | 231 | 149 | 4 | 217 | 440 | 17 | 240 | 4.66e-23 | 101 |
| Msa0040520 | AT5G48630.2 | 23.645 | 203 | 134 | 4 | 241 | 440 | 50 | 234 | 1.52e-12 | 67.8 |
| Msa0040520 | AT5G48630.1 | 23.645 | 203 | 134 | 4 | 241 | 440 | 47 | 231 | 1.60e-12 | 67.8 |
| Msa0040520 | AT2G26430.3 | 26.042 | 192 | 128 | 4 | 256 | 440 | 1 | 185 | 3.59e-12 | 67.8 |
| Msa0040520 | AT2G26430.2 | 26.042 | 192 | 128 | 4 | 256 | 440 | 1 | 185 | 3.59e-12 | 67.8 |
Find 102 sgRNAs with CRISPR-Local
Find 422 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGTCATCAGTGTTGTTTC+TGG | 0.168482 | 1_1:-70749523 | Msa0040520:three_prime_UTR |
| ACTTGGAATATGCGATTATT+TGG | 0.186755 | 1_1:-70749459 | Msa0040520:three_prime_UTR |
| GAATATCTGGCAAGAGTTTC+AGG | 0.206952 | 1_1:-70750142 | Msa0040520:CDS |
| TGAGGCAACATTGGCATAAT+TGG | 0.250561 | 1_1:+70755034 | None:intergenic |
| TTCTTGGATCATTGGTTGTT+GGG | 0.251039 | 1_1:-70755409 | Msa0040520:CDS |
| CGGTGATTGGAATGGGAAAA+AGG | 0.258972 | 1_1:+70755820 | None:intergenic |
| ATTGGTTGTTGGGGAGATTA+TGG | 0.273877 | 1_1:-70755399 | Msa0040520:intron |
| CTCTTGCCAGATATTCTTAT+AGG | 0.278279 | 1_1:+70750149 | None:intergenic |
| ACATCTGTTCTGAACAAATT+AGG | 0.280827 | 1_1:-70753755 | Msa0040520:CDS |
| TGTATTTCAAGGTCAGAAAA+AGG | 0.284030 | 1_1:+70755873 | None:intergenic |
| TCAGTGTTGTTTCTGGAGTT+TGG | 0.286903 | 1_1:-70749516 | Msa0040520:three_prime_UTR |
| TCCTCTGATTATAATGGTTT+CGG | 0.288681 | 1_1:+70755144 | None:intergenic |
| CTTCTTGGATCATTGGTTGT+TGG | 0.311002 | 1_1:-70755410 | Msa0040520:CDS |
| GCAGGCTTCGTAGCTCTCTT+TGG | 0.313661 | 1_1:-70750248 | Msa0040520:intron |
| TATAATTCCTCTGATTATAA+TGG | 0.322076 | 1_1:+70755138 | None:intergenic |
| AGATGTCTCTCAGCAATTAA+TGG | 0.325317 | 1_1:-70749640 | Msa0040520:CDS |
| TTTAAAACTTGGGTTGGGTT+AGG | 0.342890 | 1_1:+70755944 | None:intergenic |
| TTGCTGCCTATAAGAATATC+TGG | 0.344912 | 1_1:-70750155 | Msa0040520:CDS |
| CAGGCCAACTTTGGCTACTA+TGG | 0.349614 | 1_1:-70755098 | Msa0040520:CDS |
| GTAATTTAAACGGCGGTTAT+CGG | 0.353039 | 1_1:-70755205 | Msa0040520:CDS |
| ATCAGTGTTGTTTCCATCAT+AGG | 0.362225 | 1_1:+70755178 | None:intergenic |
| TGGCTGGAAGAGTGAACTTC+TGG | 0.371306 | 1_1:+70754964 | None:intergenic |
| ATATAGAGAAATCAGGCTTC+AGG | 0.384419 | 1_1:+70754859 | None:intergenic |
| AGGATAAGCTTGAAAATTGC+GGG | 0.386508 | 1_1:+70754917 | None:intergenic |
| AGGTCTTTCAAAGACCGTTT+TGG | 0.405949 | 1_1:-70753735 | Msa0040520:CDS |
| TTCTGGCTTTCTCCACGAAC+AGG | 0.416510 | 1_1:+70754981 | None:intergenic |
| GATAACCGCCGTTTAAATTA+CGG | 0.417471 | 1_1:+70755207 | None:intergenic |
| GAATATGCGATTATTTGGTT+TGG | 0.418814 | 1_1:-70749454 | Msa0040520:three_prime_UTR |
| CAGCTCCAGCAGCAATTTGA+TGG | 0.421370 | 1_1:+70750211 | None:intergenic |
| ATGATGGAAACAACACTGAT+AGG | 0.434683 | 1_1:-70755175 | Msa0040520:CDS |
| GAAGGGTAGCTTGTATTTCA+AGG | 0.439047 | 1_1:+70755862 | None:intergenic |
| ATCCACTTCGCTGCTTCCTC+AGG | 0.441902 | 1_1:-70755778 | Msa0040520:intron |
| TCATCCCTTGACATAAAGAT+AGG | 0.443536 | 1_1:+70754822 | None:intergenic |
| GCTTGAAAATTGCGGGATGA+AGG | 0.445664 | 1_1:+70754924 | None:intergenic |
| AAACCCCATCAAATTGCTGC+TGG | 0.448967 | 1_1:-70750216 | Msa0040520:CDS |
| TACAGGCCTCAAACTACCAT+TGG | 0.464526 | 1_1:-70754561 | Msa0040520:intron |
| ACAGATGTAAGAGGTGCATA+TGG | 0.464848 | 1_1:+70753770 | None:intergenic |
| TAACAACTACTGTGACAATC+AGG | 0.466056 | 1_1:-70755117 | Msa0040520:CDS |
| TCATCAAATATAGAGAAATC+AGG | 0.467039 | 1_1:+70754852 | None:intergenic |
| AATTGATCGAGATCGGTGAT+TGG | 0.470340 | 1_1:+70755807 | None:intergenic |
| AAACATGGATTAATCTAAAA+CGG | 0.472885 | 1_1:+70755901 | None:intergenic |
| TTGTTCAGAACAGATGTAAG+AGG | 0.473356 | 1_1:+70753761 | None:intergenic |
| TTATAAGCGATGGATCTTGC+AGG | 0.473953 | 1_1:+70754897 | None:intergenic |
| GGTTATCGGTCCACCTATGA+TGG | 0.475605 | 1_1:-70755191 | Msa0040520:CDS |
| GGTGAATATGGCATTAAACT+TGG | 0.477866 | 1_1:-70753714 | Msa0040520:CDS |
| GTTTGAACAGTATCGTGAAC+GGG | 0.484464 | 1_1:-70753852 | Msa0040520:CDS |
| AAATATTCAGCTCCTGTTCG+TGG | 0.486093 | 1_1:-70754993 | Msa0040520:CDS |
| TGTGACAATCAGGCCAACTT+TGG | 0.487366 | 1_1:-70755107 | Msa0040520:CDS |
| TGTGCATTCCTTCAGAATCT+CGG | 0.487420 | 1_1:-70754726 | Msa0040520:CDS |
| ACATAAAATAGTTTGAAACT+TGG | 0.491419 | 1_1:-70749476 | Msa0040520:three_prime_UTR |
| AACTCTCCATCAAGAAAAGA+TGG | 0.491522 | 1_1:-70754789 | Msa0040520:CDS |
| CTTGAAAATTGCGGGATGAA+GGG | 0.492078 | 1_1:+70754925 | None:intergenic |
| TCTACTCTATACTGAAATCA+TGG | 0.493737 | 1_1:+70749584 | None:intergenic |
| GCAACCCCATCTGTTCTTCA+AGG | 0.496041 | 1_1:-70750120 | Msa0040520:intron |
| AGCTCCAGCAGCAATTTGAT+GGG | 0.496152 | 1_1:+70750212 | None:intergenic |
| TTGTTTGTGTAAGATTTCAC+TGG | 0.497574 | 1_1:+70754175 | None:intergenic |
| TCTTGGATCATTGGTTGTTG+GGG | 0.498543 | 1_1:-70755408 | Msa0040520:CDS |
| CAGAGATGATGAGGCAACAT+TGG | 0.501968 | 1_1:+70755025 | None:intergenic |
| TCGAGATCGGTGATTGGAAT+GGG | 0.507392 | 1_1:+70755813 | None:intergenic |
| ATCGAGATCGGTGATTGGAA+TGG | 0.508473 | 1_1:+70755812 | None:intergenic |
| GCTGAAGACCGTAATTTAAA+CGG | 0.509517 | 1_1:-70755215 | Msa0040520:CDS |
| TAGCATAGTCAACATTGCAT+TGG | 0.514739 | 1_1:+70755063 | None:intergenic |
| ATACTGTCATAGACTGTGGC+TGG | 0.517066 | 1_1:+70754948 | None:intergenic |
| ACAGGCCTCAAACTACCATT+GGG | 0.525531 | 1_1:-70754560 | Msa0040520:intron |
| GCATTAAACTTGGTCAGTGA+AGG | 0.526256 | 1_1:-70753704 | Msa0040520:CDS |
| GTTCTCAATACGCTATTCAA+AGG | 0.527521 | 1_1:+70754200 | None:intergenic |
| TCCTTCAGAATCTCGGAACA+AGG | 0.531055 | 1_1:-70754719 | Msa0040520:CDS |
| CAGGATAAGCTTGAAAATTG+CGG | 0.532175 | 1_1:+70754916 | None:intergenic |
| TAATGCCATATTCACCAAAA+CGG | 0.532860 | 1_1:+70753721 | None:intergenic |
| TTCTCAATACGCTATTCAAA+GGG | 0.535468 | 1_1:+70754201 | None:intergenic |
| ATAAGCCTATCTTTATGTCA+AGG | 0.539467 | 1_1:-70754827 | Msa0040520:CDS |
| TCTCTTCTTCAGAGATGATG+AGG | 0.541037 | 1_1:+70755016 | None:intergenic |
| CAACAACCAATGATCCAAGA+AGG | 0.565001 | 1_1:+70755411 | None:intergenic |
| GCCACCATAGTAGCCAAAGT+TGG | 0.567755 | 1_1:+70755094 | None:intergenic |
| AGTGTACCTTGAAGAACAGA+TGG | 0.575995 | 1_1:+70750114 | None:intergenic |
| AACTACCATTGGGACATCCA+TGG | 0.577912 | 1_1:-70754550 | Msa0040520:CDS |
| AGTGTTGTTTCCATCATAGG+TGG | 0.578351 | 1_1:+70755181 | None:intergenic |
| GCCGAAACCATTATAATCAG+AGG | 0.583182 | 1_1:-70755145 | Msa0040520:CDS |
| TTGAGAAGTAGAATTACTAC+AGG | 0.585877 | 1_1:-70749542 | Msa0040520:three_prime_UTR |
| TAAGCCTATCTTTATGTCAA+GGG | 0.590422 | 1_1:-70754826 | Msa0040520:CDS |
| GCTCCAGCAGCAATTTGATG+GGG | 0.593348 | 1_1:+70750213 | None:intergenic |
| AATACGCTATTCAAAGGGCA+TGG | 0.596502 | 1_1:+70754206 | None:intergenic |
| GCCAACTTTGGCTACTATGG+TGG | 0.598804 | 1_1:-70755095 | Msa0040520:CDS |
| GATGTCCCAATGGTAGTTTG+AGG | 0.599085 | 1_1:+70754555 | None:intergenic |
| CATTAAACTTGGTCAGTGAA+GGG | 0.599530 | 1_1:-70753703 | Msa0040520:intron |
| ATCAGGCTTCAGGCTAGCTG+AGG | 0.599685 | 1_1:+70754869 | None:intergenic |
| GTATCGTGAACGGGTGCTTG+AGG | 0.601601 | 1_1:-70753843 | Msa0040520:CDS |
| GGTTTGAACAGTATCGTGAA+CGG | 0.606171 | 1_1:-70753853 | Msa0040520:CDS |
| TGAGGTAGAGTTATAAGCGA+TGG | 0.612383 | 1_1:+70754887 | None:intergenic |
| AACAACCAATGATCCAAGAA+GGG | 0.612992 | 1_1:+70755412 | None:intergenic |
| GTGTACCTTGAAGAACAGAT+GGG | 0.613797 | 1_1:+70750115 | None:intergenic |
| CAGAACCATGGATGTCCCAA+TGG | 0.621402 | 1_1:+70754545 | None:intergenic |
| TCTGATGAATTGATCGAGAT+CGG | 0.622143 | 1_1:+70755800 | None:intergenic |
| AAAACGGTGGCACAGAACCA+TGG | 0.624859 | 1_1:+70754533 | None:intergenic |
| AGATATTCTTATAGGCAGCA+AGG | 0.627605 | 1_1:+70750157 | None:intergenic |
| TACCTGAGGAAGCAGCGAAG+TGG | 0.641339 | 1_1:+70755776 | None:intergenic |
| GCCTTGTTCCGAGATTCTGA+AGG | 0.646755 | 1_1:+70754718 | None:intergenic |
| TGCTTCATGAAACACACTTG+CGG | 0.665068 | 1_1:-70754758 | Msa0040520:CDS |
| ACTCACAACAGGAAACCAGT+AGG | 0.689885 | 1_1:+70754136 | None:intergenic |
| GAAGACCGTAATTTAAACGG+CGG | 0.704636 | 1_1:-70755212 | Msa0040520:CDS |
| TGTACCTTGAAGAACAGATG+GGG | 0.723899 | 1_1:+70750116 | None:intergenic |
| AGGGATACTGTCATAGACTG+TGG | 0.766838 | 1_1:+70754944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTCAATTAAGAAAATTT+TGG | + | chr1_1:70749657-70749676 | None:intergenic | 10.0% |
| !!! | AGTTCTTTTTAAATATTAAT+TGG | - | chr1_1:70749860-70749879 | Msa0040520:intron | 10.0% |
| !!! | TATGAATAACATATTTTATT+AGG | - | chr1_1:70755343-70755362 | Msa0040520:intron | 10.0% |
| !!! | AATTGTATGTATAATTTTGT+TGG | - | chr1_1:70750047-70750066 | Msa0040520:intron | 15.0% |
| !!! | ATTGTATGTATAATTTTGTT+GGG | - | chr1_1:70750048-70750067 | Msa0040520:intron | 15.0% |
| !! | AAAAAAACAACTATTTAAAC+AGG | + | chr1_1:70752889-70752908 | None:intergenic | 15.0% |
| !!! | TTTTAACTTTTAACATTACT+AGG | - | chr1_1:70752970-70752989 | Msa0040520:intron | 15.0% |
| !!! | TTTAACTTTTAACATTACTA+GGG | - | chr1_1:70752971-70752990 | Msa0040520:intron | 15.0% |
| !!! | ATTTGTTTTTCGAATAAAAA+AGG | - | chr1_1:70755408-70755427 | Msa0040520:CDS | 15.0% |
| !!! | TTTGTTTTTCGAATAAAAAA+GGG | - | chr1_1:70755409-70755428 | Msa0040520:CDS | 15.0% |
| !!! | AAACATGGATTAATCTAAAA+CGG | + | chr1_1:70749433-70749452 | None:intergenic | 20.0% |
| !! | TTTCTATATGAATTTGAAAG+TGG | + | chr1_1:70749680-70749699 | None:intergenic | 20.0% |
| !!! | TCTATCTGTTTTTTTTTTCA+TGG | - | chr1_1:70749714-70749733 | Msa0040520:intron | 20.0% |
| !! | ATCGTAAACATTGTATATTT+AGG | - | chr1_1:70749805-70749824 | Msa0040520:intron | 20.0% |
| !!! | TGTTTTCATTAACATTATGT+TGG | - | chr1_1:70750005-70750024 | Msa0040520:intron | 20.0% |
| !! | TATAATTCCTCTGATTATAA+TGG | + | chr1_1:70750196-70750215 | None:intergenic | 20.0% |
| !! | TATTTCAATTAACTTAAGAG+CGG | - | chr1_1:70751017-70751036 | Msa0040520:intron | 20.0% |
| !!! | TAATAGAGGTATAAGAATTA+TGG | + | chr1_1:70751386-70751405 | None:intergenic | 20.0% |
| !! | AATTCTTATACCTCTATTAT+CGG | - | chr1_1:70751387-70751406 | Msa0040520:intron | 20.0% |
| !!! | ATTATTTTGGACCAAAATTT+TGG | + | chr1_1:70751957-70751976 | None:intergenic | 20.0% |
| !! | TTTAACAGAAAATATGTGTT+GGG | + | chr1_1:70752241-70752260 | None:intergenic | 20.0% |
| !! | AACAGTATGAATTTCAAATA+TGG | - | chr1_1:70752337-70752356 | Msa0040520:intron | 20.0% |
| !! | TTTGAAAGGGAAAAAAATAA+AGG | + | chr1_1:70752833-70752852 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTCCCTTTCAAA+TGG | - | chr1_1:70752833-70752852 | Msa0040520:intron | 20.0% |
| !! | ATTAACAAAACCATTTGAAA+GGG | + | chr1_1:70752846-70752865 | None:intergenic | 20.0% |
| !! | CATACTTAATTTACTTTCAT+TGG | - | chr1_1:70752918-70752937 | Msa0040520:intron | 20.0% |
| !!! | TTTCAACATCATTCATATTT+TGG | + | chr1_1:70753135-70753154 | None:intergenic | 20.0% |
| !! | AATACCTATATTTAACCTAA+TGG | + | chr1_1:70753168-70753187 | None:intergenic | 20.0% |
| !!! | ATATCGTTATTTCTTTGTTT+TGG | - | chr1_1:70753391-70753410 | Msa0040520:intron | 20.0% |
| !! | AATACTCAAAATGTACTTAA+AGG | - | chr1_1:70753796-70753815 | Msa0040520:CDS | 20.0% |
| !!! | GATAAATGAATTTTGTAGTT+TGG | - | chr1_1:70755313-70755332 | Msa0040520:intron | 20.0% |
| !! | TATAGTAATCAAAAGAAATC+AGG | + | chr1_1:70755454-70755473 | None:intergenic | 20.0% |
| !!! | ACATAAAATAGTTTGAAACT+TGG | - | chr1_1:70755855-70755874 | Msa0040520:CDS | 20.0% |
| !!! | GTTAATTTTGTTGTTTTTCT+TGG | - | chr1_1:70755902-70755921 | Msa0040520:CDS | 20.0% |
| !!! | ACCAACTCTTTTTAAAACTT+GGG | + | chr1_1:70749400-70749419 | None:intergenic | 25.0% |
| !!! | TACCAACTCTTTTTAAAACT+TGG | + | chr1_1:70749401-70749420 | None:intergenic | 25.0% |
| !!! | ATTAGGGTTTTGAAAAAGAA+GGG | + | chr1_1:70749489-70749508 | None:intergenic | 25.0% |
| !!! | AATTAGGGTTTTGAAAAAGA+AGG | + | chr1_1:70749490-70749509 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCATGGATCGTTA+TGG | - | chr1_1:70749724-70749743 | Msa0040520:intron | 25.0% |
| ! | GTAAACATTGTATATTTAGG+TGG | - | chr1_1:70749808-70749827 | Msa0040520:intron | 25.0% |
| ! | TCATCAAATATAGAGAAATC+AGG | + | chr1_1:70750482-70750501 | None:intergenic | 25.0% |
| !! | AAAGCATGAATTTAGAACTA+GGG | + | chr1_1:70750878-70750897 | None:intergenic | 25.0% |
| !! | TAAAGCATGAATTTAGAACT+AGG | + | chr1_1:70750879-70750898 | None:intergenic | 25.0% |
| !! | ACAAAAGAGGAAAGAATTTT+GGG | + | chr1_1:70751234-70751253 | None:intergenic | 25.0% |
| !! | TACAAAAGAGGAAAGAATTT+TGG | + | chr1_1:70751235-70751254 | None:intergenic | 25.0% |
| ! | AAATAAATCAGCATTTCTCT+TGG | - | chr1_1:70751354-70751373 | Msa0040520:intron | 25.0% |
| !! | ACTACTCTAAATTTTGAACT+CGG | - | chr1_1:70751528-70751547 | Msa0040520:intron | 25.0% |
| !! | ACTGTGAATCAACATTATTT+TGG | + | chr1_1:70751970-70751989 | None:intergenic | 25.0% |
| !!! | AATATGACCCTATTTTTGTT+TGG | - | chr1_1:70752194-70752213 | Msa0040520:intron | 25.0% |
| !!! | ATATGACCCTATTTTTGTTT+GGG | - | chr1_1:70752195-70752214 | Msa0040520:intron | 25.0% |
| ! | TTAACAGAAAATATGTGTTG+GGG | + | chr1_1:70752240-70752259 | None:intergenic | 25.0% |
| ! | GTTTAACAGAAAATATGTGT+TGG | + | chr1_1:70752242-70752261 | None:intergenic | 25.0% |
| ! | ATGAATTTCAAATATGGTTC+CGG | - | chr1_1:70752343-70752362 | Msa0040520:intron | 25.0% |
| ! | ATTTGACAACAATAGTATGA+AGG | - | chr1_1:70752613-70752632 | Msa0040520:intron | 25.0% |
| ! | AACAATAGTATGAAGGAAAA+TGG | - | chr1_1:70752620-70752639 | Msa0040520:intron | 25.0% |
| ! | ACAATAGTATGAAGGAAAAT+GGG | - | chr1_1:70752621-70752640 | Msa0040520:intron | 25.0% |
| ! | CATTAACAAAACCATTTGAA+AGG | + | chr1_1:70752847-70752866 | None:intergenic | 25.0% |
| ! | AAAACAACTATTTAAACAGG+TGG | + | chr1_1:70752886-70752905 | None:intergenic | 25.0% |
| ! | TAAAACTTTGATTCAAACAG+AGG | + | chr1_1:70753042-70753061 | None:intergenic | 25.0% |
| !! | TCATACATCATTCACAATTT+TGG | + | chr1_1:70753066-70753085 | None:intergenic | 25.0% |
| ! | AATGCCACTAAGTTAAATAT+AGG | - | chr1_1:70753094-70753113 | Msa0040520:intron | 25.0% |
| !! | GTTACCTATATTTAACTTAG+TGG | + | chr1_1:70753101-70753120 | None:intergenic | 25.0% |
| !!! | TCATATTTTGGCTAAAACTT+CGG | + | chr1_1:70753123-70753142 | None:intergenic | 25.0% |
| ! | AATGCCATTAGGTTAAATAT+AGG | - | chr1_1:70753161-70753180 | Msa0040520:intron | 25.0% |
| ! | TCAATCAATTATTTGTGTCT+TGG | - | chr1_1:70753232-70753251 | Msa0040520:intron | 25.0% |
| ! | TGATCTTATCCTTAATGTTA+TGG | - | chr1_1:70753276-70753295 | Msa0040520:intron | 25.0% |
| ! | GAACAAATTTCAAATCTAAG+AGG | + | chr1_1:70753313-70753332 | None:intergenic | 25.0% |
| !! | TCTGTTTTCAAAAGAAAATC+TGG | - | chr1_1:70753360-70753379 | Msa0040520:intron | 25.0% |
| ! | AGAAAGAAAAAAAAAAACCC+AGG | - | chr1_1:70753461-70753480 | Msa0040520:intron | 25.0% |
| !! | ACTCATTTGAAGTATAATAC+AGG | + | chr1_1:70753660-70753679 | None:intergenic | 25.0% |
| ! | TCAACATGAAATATCAATAG+CGG | - | chr1_1:70753685-70753704 | Msa0040520:intron | 25.0% |
| ! | ATAAATCCAATAGAAGAGAA+GGG | + | chr1_1:70753970-70753989 | None:intergenic | 25.0% |
| ! | AATAAATCCAATAGAAGAGA+AGG | + | chr1_1:70753971-70753990 | None:intergenic | 25.0% |
| ! | AATGATATATGAAAGACACA+AGG | + | chr1_1:70754349-70754368 | None:intergenic | 25.0% |
| !! | GAGAATTTTTACTCAAATGT+TGG | + | chr1_1:70754376-70754395 | None:intergenic | 25.0% |
| !! | ATTTTCATTGCATAAGTTTC+TGG | - | chr1_1:70754669-70754688 | Msa0040520:intron | 25.0% |
| !! | GCTACTTGATAATTATAACA+AGG | + | chr1_1:70755253-70755272 | None:intergenic | 25.0% |
| !! | AAAAAAGGGATCTTTATTTG+AGG | - | chr1_1:70755423-70755442 | Msa0040520:CDS | 25.0% |
| !! | TCCATTTGAAACTTAGAAAT+TGG | - | chr1_1:70755502-70755521 | Msa0040520:intron | 25.0% |
| ! | ACCAATTTCTAAGTTTCAAA+TGG | + | chr1_1:70755506-70755525 | None:intergenic | 25.0% |
| !!! | CTCTTTTTAAAACTTGGGTT+GGG | + | chr1_1:70749395-70749414 | None:intergenic | 30.0% |
| !!! | ACTCTTTTTAAAACTTGGGT+TGG | + | chr1_1:70749396-70749415 | None:intergenic | 30.0% |
| !!! | ACCCAAGTTTTAAAAAGAGT+TGG | - | chr1_1:70749396-70749415 | Msa0040520:three_prime_UTR | 30.0% |
| CAGAAAAAGGAAAGTAAACA+TGG | + | chr1_1:70749448-70749467 | None:intergenic | 30.0% | |
| TGTATTTCAAGGTCAGAAAA+AGG | + | chr1_1:70749461-70749480 | None:intergenic | 30.0% | |
| !! | CAAATTGATGATGAGATGAT+GGG | + | chr1_1:70749596-70749615 | None:intergenic | 30.0% |
| !! | ACAAATTGATGATGAGATGA+TGG | + | chr1_1:70749597-70749616 | None:intergenic | 30.0% |
| !! | TGAAATTCTATGCTTTTTGC+TGG | - | chr1_1:70749769-70749788 | Msa0040520:intron | 30.0% |
| !! | ATGCTTTTTGCTGGTTAATT+TGG | - | chr1_1:70749778-70749797 | Msa0040520:intron | 30.0% |
| !! | TGCTTTTTGCTGGTTAATTT+GGG | - | chr1_1:70749779-70749798 | Msa0040520:intron | 30.0% |
| TCCTCTGATTATAATGGTTT+CGG | + | chr1_1:70750190-70750209 | None:intergenic | 30.0% | |
| ATAAGCCTATCTTTATGTCA+AGG | - | chr1_1:70750504-70750523 | Msa0040520:intron | 30.0% | |
| TAAGCCTATCTTTATGTCAA+GGG | - | chr1_1:70750505-70750524 | Msa0040520:intron | 30.0% | |
| ! | TCAATACCATCTTTTCTTGA+TGG | + | chr1_1:70750551-70750570 | None:intergenic | 30.0% |
| ! | GCTTATATGTTTGTGTTTTG+TGG | - | chr1_1:70750703-70750722 | Msa0040520:intron | 30.0% |
| ATCGTATCATGTTTGTTTAC+AGG | - | chr1_1:70750753-70750772 | Msa0040520:intron | 30.0% | |
| AAAAACTCACAAATCTGTCA+TGG | + | chr1_1:70750847-70750866 | None:intergenic | 30.0% | |
| TTTGTTGCTCATATCTATGA+AGG | - | chr1_1:70750976-70750995 | Msa0040520:intron | 30.0% | |
| TTCTCAATACGCTATTCAAA+GGG | + | chr1_1:70751133-70751152 | None:intergenic | 30.0% | |
| TTGTTTGTGTAAGATTTCAC+TGG | + | chr1_1:70751159-70751178 | None:intergenic | 30.0% | |
| ! | GTTTGAAATATACTCACAAC+AGG | + | chr1_1:70751209-70751228 | None:intergenic | 30.0% |
| ! | ACATCTGTTCTGAACAAATT+AGG | - | chr1_1:70751576-70751595 | Msa0040520:intron | 30.0% |
| TAATGCCATATTCACCAAAA+CGG | + | chr1_1:70751613-70751632 | None:intergenic | 30.0% | |
| TGTTTATACCATTTATCTCG+AGG | - | chr1_1:70751702-70751721 | Msa0040520:intron | 30.0% | |
| GTTTATACCATTTATCTCGA+GGG | - | chr1_1:70751703-70751722 | Msa0040520:intron | 30.0% | |
| ACATACAAGTTTCATTTGAG+TGG | + | chr1_1:70751740-70751759 | None:intergenic | 30.0% | |
| TGAATGAAAAAACCTAGTCT+AGG | - | chr1_1:70751835-70751854 | Msa0040520:intron | 30.0% | |
| CAAGAAATTATCATGTCTTG+AGG | - | chr1_1:70751890-70751909 | Msa0040520:intron | 30.0% | |
| ! | TTTTGGACCAAAATTTTGGA+GGG | + | chr1_1:70751953-70751972 | None:intergenic | 30.0% |
| ! | ATTTTGGACCAAAATTTTGG+AGG | + | chr1_1:70751954-70751973 | None:intergenic | 30.0% |
| AATAACTACACAGAGAAGTT+GGG | + | chr1_1:70752005-70752024 | None:intergenic | 30.0% | |
| AAATAACTACACAGAGAAGT+TGG | + | chr1_1:70752006-70752025 | None:intergenic | 30.0% | |
| TCTGTGTAGTTATTTGTCAT+GGG | - | chr1_1:70752011-70752030 | Msa0040520:intron | 30.0% | |
| !! | TCATGGGATATTGATTGTTT+TGG | - | chr1_1:70752027-70752046 | Msa0040520:intron | 30.0% |
| AGTTGAATTGCTGATGTTAA+TGG | - | chr1_1:70752157-70752176 | Msa0040520:intron | 30.0% | |
| CAAAAATAGGGTCATATTCA+TGG | + | chr1_1:70752192-70752211 | None:intergenic | 30.0% | |
| GTTTAGCCCAAACAAAAATA+GGG | + | chr1_1:70752204-70752223 | None:intergenic | 30.0% | |
| ! | TCATACTGTTAGCTCATTTT+TGG | + | chr1_1:70752327-70752346 | None:intergenic | 30.0% |
| TGAATAACCAAAACTCGTTT+AGG | + | chr1_1:70752380-70752399 | None:intergenic | 30.0% | |
| ! | TTCACAACATAAATTGACTC+TGG | + | chr1_1:70752433-70752452 | None:intergenic | 30.0% |
| CAATGCTTTGTGCTAAATAA+TGG | - | chr1_1:70752536-70752555 | Msa0040520:intron | 30.0% | |
| ATGAAGGAAACTTTCTACTT+TGG | - | chr1_1:70752739-70752758 | Msa0040520:intron | 30.0% | |
| TTGATGAACAAAATTGTTCC+TGG | - | chr1_1:70752775-70752794 | Msa0040520:intron | 30.0% | |
| ATTGTTCCTGGACAAAAAAT+TGG | - | chr1_1:70752787-70752806 | Msa0040520:intron | 30.0% | |
| !!! | ATCAAACCAATTTTTTGTCC+AGG | + | chr1_1:70752796-70752815 | None:intergenic | 30.0% |
| ! | TCTTGATAGTTGGATATTGT+TGG | - | chr1_1:70753000-70753019 | Msa0040520:intron | 30.0% |
| ACAGAGGATTATCAAAAACA+TGG | + | chr1_1:70753026-70753045 | None:intergenic | 30.0% | |
| ! | TGAAAATCTGAAATGCCATT+AGG | - | chr1_1:70753150-70753169 | Msa0040520:intron | 30.0% |
| ! | TCCTTAATGTTATGGTTTGT+AGG | - | chr1_1:70753284-70753303 | Msa0040520:intron | 30.0% |
| TACAACATTTATGGACACAA+TGG | + | chr1_1:70753512-70753531 | None:intergenic | 30.0% | |
| TAAACCAGCTACAACATTTA+TGG | + | chr1_1:70753521-70753540 | None:intergenic | 30.0% | |
| AAGACTGACAACATATATTG+TGG | + | chr1_1:70753562-70753581 | None:intergenic | 30.0% | |
| AATACAAATGCATAACAGTG+TGG | + | chr1_1:70753716-70753735 | None:intergenic | 30.0% | |
| CTGTTATGCATTTGTATTGA+AGG | - | chr1_1:70753718-70753737 | Msa0040520:CDS | 30.0% | |
| TTTGAGTATTTGAGCTCATA+AGG | + | chr1_1:70753786-70753805 | None:intergenic | 30.0% | |
| TACTTAAAGGTCTTCTTTGT+TGG | - | chr1_1:70753809-70753828 | Msa0040520:CDS | 30.0% | |
| CTTCTTTACTCTCTTATTCT+GGG | - | chr1_1:70753851-70753870 | Msa0040520:CDS | 30.0% | |
| GCTAAAGCACAAGAAAATTA+TGG | + | chr1_1:70754052-70754071 | None:intergenic | 30.0% | |
| ! | TGCTTTAGCATTGAATGATA+AGG | - | chr1_1:70754063-70754082 | Msa0040520:intron | 30.0% |
| ! | TTTAGCATTGAATGATAAGG+AGG | - | chr1_1:70754066-70754085 | Msa0040520:intron | 30.0% |
| ! | TTAGCATTGAATGATAAGGA+GGG | - | chr1_1:70754067-70754086 | Msa0040520:intron | 30.0% |
| ACTGTTGAACCTAATAAAAG+TGG | - | chr1_1:70754268-70754287 | Msa0040520:intron | 30.0% | |
| TTGAACCTAATAAAAGTGGT+AGG | - | chr1_1:70754272-70754291 | Msa0040520:intron | 30.0% | |
| TGAACCTAATAAAAGTGGTA+GGG | - | chr1_1:70754273-70754292 | Msa0040520:intron | 30.0% | |
| ! | TTGCTTCAGTATTTTCCTTT+TGG | - | chr1_1:70754438-70754457 | Msa0040520:intron | 30.0% |
| ! | TGCTTCAGTATTTTCCTTTT+GGG | - | chr1_1:70754439-70754458 | Msa0040520:intron | 30.0% |
| TTAAATTGTCTTTGCCCAAA+AGG | + | chr1_1:70754456-70754475 | None:intergenic | 30.0% | |
| ! | CTCTTGTCAATATTTTGTCT+TGG | + | chr1_1:70754580-70754599 | None:intergenic | 30.0% |
| CAAGACAAAATATTGACAAG+AGG | - | chr1_1:70754578-70754597 | Msa0040520:intron | 30.0% | |
| ! | CAAATGAATTTTCGAAGCTA+AGG | + | chr1_1:70754613-70754632 | None:intergenic | 30.0% |
| GCTTCGAAAATTCATTTGTT+TGG | - | chr1_1:70754615-70754634 | Msa0040520:intron | 30.0% | |
| ! | TATAAGAAAGCATGCATTGA+GGG | + | chr1_1:70754650-70754669 | None:intergenic | 30.0% |
| ! | ATATAAGAAAGCATGCATTG+AGG | + | chr1_1:70754651-70754670 | None:intergenic | 30.0% |
| GTAAGATAGTGCTAATAGTT+TGG | - | chr1_1:70754752-70754771 | Msa0040520:CDS | 30.0% | |
| !! | ATTATAGTTGGTAAGGAACA+TGG | - | chr1_1:70754834-70754853 | Msa0040520:CDS | 30.0% |
| AAAAAAATTCAGCTTCAGCA+AGG | + | chr1_1:70755061-70755080 | None:intergenic | 30.0% | |
| !!! | GAAGCTGAATTTTTTTTTGC+AGG | - | chr1_1:70755065-70755084 | Msa0040520:CDS | 30.0% |
| CTATGGTATAACTTCAAACT+AGG | + | chr1_1:70755529-70755548 | None:intergenic | 30.0% | |
| TTGAAGTTATACCATAGCTT+TGG | - | chr1_1:70755532-70755551 | Msa0040520:intron | 30.0% | |
| TCTACTCTATACTGAAATCA+TGG | + | chr1_1:70755750-70755769 | None:intergenic | 30.0% | |
| TTGAGAAGTAGAATTACTAC+AGG | - | chr1_1:70755789-70755808 | Msa0040520:CDS | 30.0% | |
| ! | AACTATTTTATGTGCATGCA+CGG | + | chr1_1:70755848-70755867 | None:intergenic | 30.0% |
| ACTTGGAATATGCGATTATT+TGG | - | chr1_1:70755872-70755891 | Msa0040520:CDS | 30.0% | |
| GAATATGCGATTATTTGGTT+TGG | - | chr1_1:70755877-70755896 | Msa0040520:CDS | 30.0% | |
| !! | TTTAAAACTTGGGTTGGGTT+AGG | + | chr1_1:70749390-70749409 | None:intergenic | 35.0% |
| GAATGGGAAAAAGGGAATTA+GGG | + | chr1_1:70749505-70749524 | None:intergenic | 35.0% | |
| TCTGATGAATTGATCGAGAT+CGG | + | chr1_1:70749534-70749553 | None:intergenic | 35.0% | |
| TTTGTAAGATTGCATACCTG+AGG | + | chr1_1:70749572-70749591 | None:intergenic | 35.0% | |
| !! | GCTTTTTGCTGGTTAATTTG+GGG | - | chr1_1:70749780-70749799 | Msa0040520:intron | 35.0% |
| !! | CTTTTTGCTGGTTAATTTGG+GGG | - | chr1_1:70749781-70749800 | Msa0040520:intron | 35.0% |
| !!! | AACAGTGTTTTTTCCCTTCT+TGG | - | chr1_1:70749906-70749925 | Msa0040520:intron | 35.0% |
| ! | TTTTTCCCTTCTTGGATCAT+TGG | - | chr1_1:70749914-70749933 | Msa0040520:intron | 35.0% |
| AACAACCAATGATCCAAGAA+GGG | + | chr1_1:70749922-70749941 | None:intergenic | 35.0% | |
| ! | TTCTTGGATCATTGGTTGTT+GGG | - | chr1_1:70749922-70749941 | Msa0040520:intron | 35.0% |
| ! | GTTGGGTTATATGATTTTGC+AGG | - | chr1_1:70750065-70750084 | Msa0040520:intron | 35.0% |
| ! | CAGGAGTTATGTCTTTTGTT+CGG | - | chr1_1:70750084-70750103 | Msa0040520:intron | 35.0% |
| GCTGAAGACCGTAATTTAAA+CGG | - | chr1_1:70750116-70750135 | Msa0040520:intron | 35.0% | |
| GATAACCGCCGTTTAAATTA+CGG | + | chr1_1:70750127-70750146 | None:intergenic | 35.0% | |
| GTAATTTAAACGGCGGTTAT+CGG | - | chr1_1:70750126-70750145 | Msa0040520:CDS | 35.0% | |
| !! | ATCAGTGTTGTTTCCATCAT+AGG | + | chr1_1:70750156-70750175 | None:intergenic | 35.0% |
| ! | ATGATGGAAACAACACTGAT+AGG | - | chr1_1:70750156-70750175 | Msa0040520:CDS | 35.0% |
| TAACAACTACTGTGACAATC+AGG | - | chr1_1:70750214-70750233 | Msa0040520:CDS | 35.0% | |
| TAGCATAGTCAACATTGCAT+TGG | + | chr1_1:70750271-70750290 | None:intergenic | 35.0% | |
| AGGATAAGCTTGAAAATTGC+GGG | + | chr1_1:70750417-70750436 | None:intergenic | 35.0% | |
| CAGGATAAGCTTGAAAATTG+CGG | + | chr1_1:70750418-70750437 | None:intergenic | 35.0% | |
| ATATAGAGAAATCAGGCTTC+AGG | + | chr1_1:70750475-70750494 | None:intergenic | 35.0% | |
| TCATCCCTTGACATAAAGAT+AGG | + | chr1_1:70750512-70750531 | None:intergenic | 35.0% | |
| AACTCTCCATCAAGAAAAGA+TGG | - | chr1_1:70750542-70750561 | Msa0040520:intron | 35.0% | |
| ! | GTCACATGGATAGTCTTTTT+AGG | - | chr1_1:70750661-70750680 | Msa0040520:intron | 35.0% |
| GTTCTCAATACGCTATTCAA+AGG | + | chr1_1:70751134-70751153 | None:intergenic | 35.0% | |
| ! | ATTTTGCTTTCTTGTCCTAC+TGG | - | chr1_1:70751180-70751199 | Msa0040520:intron | 35.0% |
| TGACAAGCATAGTACAAAAG+AGG | + | chr1_1:70751247-70751266 | None:intergenic | 35.0% | |
| GATTCAGCATACATAGTCAT+GGG | + | chr1_1:70751284-70751303 | None:intergenic | 35.0% | |
| TGATTCAGCATACATAGTCA+TGG | + | chr1_1:70751285-70751304 | None:intergenic | 35.0% | |
| TGACTATGTATGCTGAATCA+CGG | - | chr1_1:70751285-70751304 | Msa0040520:intron | 35.0% | |
| AATCACGGTAAAGTTCAAGA+CGG | - | chr1_1:70751300-70751319 | Msa0040520:intron | 35.0% | |
| !!! | ACTTGATTTGTGTTTTCCAC+AGG | - | chr1_1:70751452-70751471 | Msa0040520:intron | 35.0% |
| ! | ATTTGTGTTTTCCACAGGAT+TGG | - | chr1_1:70751457-70751476 | Msa0040520:intron | 35.0% |
| TTGTTCAGAACAGATGTAAG+AGG | + | chr1_1:70751573-70751592 | None:intergenic | 35.0% | |
| !! | AAAGACCGTTTTGGTGAATA+TGG | - | chr1_1:70751605-70751624 | Msa0040520:intron | 35.0% |
| GGTGAATATGGCATTAAACT+TGG | - | chr1_1:70751617-70751636 | Msa0040520:intron | 35.0% | |
| CATTAAACTTGGTCAGTGAA+GGG | - | chr1_1:70751628-70751647 | Msa0040520:intron | 35.0% | |
| ! | AGTTTTACCCTCGAGATAAA+TGG | + | chr1_1:70751713-70751732 | None:intergenic | 35.0% |
| ! | TCTTCAGGTATCCCTTTTAT+TGG | - | chr1_1:70751781-70751800 | Msa0040520:intron | 35.0% |
| GCTAGTCAGAACCAATAAAA+GGG | + | chr1_1:70751795-70751814 | None:intergenic | 35.0% | |
| AATTATCATGTCTTGAGGTG+TGG | - | chr1_1:70751895-70751914 | Msa0040520:intron | 35.0% | |
| CTCTGTGTAGTTATTTGTCA+TGG | - | chr1_1:70752010-70752029 | Msa0040520:intron | 35.0% | |
| TTTGGCATGCATATAATTGC+AGG | - | chr1_1:70752045-70752064 | Msa0040520:intron | 35.0% | |
| TCTTCACAAGATTATCATGC+TGG | - | chr1_1:70752069-70752088 | Msa0040520:intron | 35.0% | |
| GCTTGTATGATATTCTTAGC+TGG | - | chr1_1:70752091-70752110 | Msa0040520:intron | 35.0% | |
| TGTATGATATTCTTAGCTGG+CGG | - | chr1_1:70752094-70752113 | Msa0040520:intron | 35.0% | |
| GGTTTAGCCCAAACAAAAAT+AGG | + | chr1_1:70752205-70752224 | None:intergenic | 35.0% | |
| AAAATATGTGTTGGGGCATA+GGG | + | chr1_1:70752233-70752252 | None:intergenic | 35.0% | |
| CACAAACAACAACACAATGA+GGG | + | chr1_1:70752264-70752283 | None:intergenic | 35.0% | |
| !! | GTTGTTGTTTGTGCTGATTA+CGG | - | chr1_1:70752271-70752290 | Msa0040520:intron | 35.0% |
| ! | TTGTTGTCCTAAACGAGTTT+TGG | - | chr1_1:70752370-70752389 | Msa0040520:intron | 35.0% |
| ! | ATAAATTGACTCTGGTGGAA+AGG | + | chr1_1:70752425-70752444 | None:intergenic | 35.0% |
| ! | ACAACATAAATTGACTCTGG+TGG | + | chr1_1:70752430-70752449 | None:intergenic | 35.0% |
| AAGATAACACTGTAGCATAG+CGG | + | chr1_1:70752504-70752523 | None:intergenic | 35.0% | |
| !! | CACAAAGCATTGTCAAATAG+GGG | + | chr1_1:70752528-70752547 | None:intergenic | 35.0% |
| !! | GCACAAAGCATTGTCAAATA+GGG | + | chr1_1:70752529-70752548 | None:intergenic | 35.0% |
| !! | AGCACAAAGCATTGTCAAAT+AGG | + | chr1_1:70752530-70752549 | None:intergenic | 35.0% |
| TGCTAAATAATGGTGTGTTG+CGG | - | chr1_1:70752546-70752565 | Msa0040520:intron | 35.0% | |
| ! | CAAATAGTAGTGCTATTGAG+TGG | + | chr1_1:70752598-70752617 | None:intergenic | 35.0% |
| ! | ATGGGTTTTTATTCTGCTTC+TGG | - | chr1_1:70752639-70752658 | Msa0040520:intron | 35.0% |
| ! | AGGGATTCATTCTTGATAGT+TGG | - | chr1_1:70752990-70753009 | Msa0040520:intron | 35.0% |
| TGTCTGAAAGATTAGATGCT+TGG | - | chr1_1:70753204-70753223 | Msa0040520:intron | 35.0% | |
| TAAGATCATCACACAATCAC+AGG | + | chr1_1:70753264-70753283 | None:intergenic | 35.0% | |
| GCCTACAAACCATAACATTA+AGG | + | chr1_1:70753288-70753307 | None:intergenic | 35.0% | |
| TGTAAATTCAAGCCTCAACT+TGG | - | chr1_1:70753581-70753600 | Msa0040520:intron | 35.0% | |
| ATCATTTGGCATTTAGTGGT+TGG | - | chr1_1:70753634-70753653 | Msa0040520:intron | 35.0% | |
| ACATGAAATATCAATAGCGG+TGG | - | chr1_1:70753688-70753707 | Msa0040520:intron | 35.0% | |
| TAAAGGTCTTCTTTGTTGGA+CGG | - | chr1_1:70753813-70753832 | Msa0040520:CDS | 35.0% | |
| CCAGAATAAGAGAGTAAAGA+AGG | + | chr1_1:70753853-70753872 | None:intergenic | 35.0% | |
| CCTTCTTTACTCTCTTATTC+TGG | - | chr1_1:70753850-70753869 | Msa0040520:CDS | 35.0% | |
| TTACTCTCTTATTCTGGGTT+TGG | - | chr1_1:70753856-70753875 | Msa0040520:CDS | 35.0% | |
| TCTTAAATGGATGCAACATG+TGG | - | chr1_1:70754159-70754178 | Msa0040520:CDS | 35.0% | |
| GAACCTAATAAAAGTGGTAG+GGG | - | chr1_1:70754274-70754293 | Msa0040520:intron | 35.0% | |
| !! | ATTCCCCTACCACTTTTATT+AGG | + | chr1_1:70754280-70754299 | None:intergenic | 35.0% |
| ATAAAAGTGGTAGGGGAATA+TGG | - | chr1_1:70754281-70754300 | Msa0040520:intron | 35.0% | |
| TAAAAGTGGTAGGGGAATAT+GGG | - | chr1_1:70754282-70754301 | Msa0040520:intron | 35.0% | |
| TTCGTAATCAAGTCATCTAG+AGG | - | chr1_1:70754411-70754430 | Msa0040520:intron | 35.0% | |
| TCGTAATCAAGTCATCTAGA+GGG | - | chr1_1:70754412-70754431 | Msa0040520:intron | 35.0% | |
| TGTAAGTATCCCAATGTACA+TGG | - | chr1_1:70754545-70754564 | Msa0040520:CDS | 35.0% | |
| GACAAAATATTGACAAGAGG+TGG | - | chr1_1:70754581-70754600 | Msa0040520:intron | 35.0% | |
| AACAATCCTACACAGATTCT+TGG | - | chr1_1:70754785-70754804 | Msa0040520:CDS | 35.0% | |
| TGAGTTGCTGCTATTATAGT+TGG | - | chr1_1:70754822-70754841 | Msa0040520:CDS | 35.0% | |
| ! | TGCTGCTATTATAGTTGGTA+AGG | - | chr1_1:70754827-70754846 | Msa0040520:CDS | 35.0% |
| TAAAGCATATGTTGCAACCA+TGG | + | chr1_1:70754930-70754949 | None:intergenic | 35.0% | |
| AAGGTCCATGTTCAAAAACT+TGG | + | chr1_1:70755158-70755177 | None:intergenic | 35.0% | |
| AGATATTCTTATAGGCAGCA+AGG | + | chr1_1:70755177-70755196 | None:intergenic | 35.0% | |
| TTGCTGCCTATAAGAATATC+TGG | - | chr1_1:70755176-70755195 | Msa0040520:CDS | 35.0% | |
| CTCTTGCCAGATATTCTTAT+AGG | + | chr1_1:70755185-70755204 | None:intergenic | 35.0% | |
| ATTAGGTCAAAATCTTGCAC+AGG | - | chr1_1:70755360-70755379 | Msa0040520:intron | 35.0% | |
| CAAATTGTTCAACTGATAGC+TGG | + | chr1_1:70755393-70755412 | None:intergenic | 35.0% | |
| TATACAAGATGCCAAAGCTA+TGG | + | chr1_1:70755546-70755565 | None:intergenic | 35.0% | |
| CATCTTGTATAACCTTGTCA+GGG | - | chr1_1:70755555-70755574 | Msa0040520:intron | 35.0% | |
| AGATGTCTCTCAGCAATTAA+TGG | - | chr1_1:70755691-70755710 | Msa0040520:intron | 35.0% | |
| ! | ACTATTTTATGTGCATGCAC+GGG | + | chr1_1:70755847-70755866 | None:intergenic | 35.0% |
| ! | GAAGGGTAGCTTGTATTTCA+AGG | + | chr1_1:70749472-70749491 | None:intergenic | 40.0% |
| GGAATGGGAAAAAGGGAATT+AGG | + | chr1_1:70749506-70749525 | None:intergenic | 40.0% | |
| GGTGATTGGAATGGGAAAAA+GGG | + | chr1_1:70749513-70749532 | None:intergenic | 40.0% | |
| AATTGATCGAGATCGGTGAT+TGG | + | chr1_1:70749527-70749546 | None:intergenic | 40.0% | |
| CAACAACCAATGATCCAAGA+AGG | + | chr1_1:70749923-70749942 | None:intergenic | 40.0% | |
| ! | CTTCTTGGATCATTGGTTGT+TGG | - | chr1_1:70749921-70749940 | Msa0040520:intron | 40.0% |
| ! | TCTTGGATCATTGGTTGTTG+GGG | - | chr1_1:70749923-70749942 | Msa0040520:intron | 40.0% |
| ATTGGTTGTTGGGGAGATTA+TGG | - | chr1_1:70749932-70749951 | Msa0040520:intron | 40.0% | |
| GAAGACCGTAATTTAAACGG+CGG | - | chr1_1:70750119-70750138 | Msa0040520:intron | 40.0% | |
| !! | AGTGTTGTTTCCATCATAGG+TGG | + | chr1_1:70750153-70750172 | None:intergenic | 40.0% |
| GCCGAAACCATTATAATCAG+AGG | - | chr1_1:70750186-70750205 | Msa0040520:CDS | 40.0% | |
| TGAGGCAACATTGGCATAAT+TGG | + | chr1_1:70750300-70750319 | None:intergenic | 40.0% | |
| TCTCTTCTTCAGAGATGATG+AGG | + | chr1_1:70750318-70750337 | None:intergenic | 40.0% | |
| AAATATTCAGCTCCTGTTCG+TGG | - | chr1_1:70750338-70750357 | Msa0040520:intron | 40.0% | |
| CTTGAAAATTGCGGGATGAA+GGG | + | chr1_1:70750409-70750428 | None:intergenic | 40.0% | |
| TTATAAGCGATGGATCTTGC+AGG | + | chr1_1:70750437-70750456 | None:intergenic | 40.0% | |
| TGAGGTAGAGTTATAAGCGA+TGG | + | chr1_1:70750447-70750466 | None:intergenic | 40.0% | |
| TGCTTCATGAAACACACTTG+CGG | - | chr1_1:70750573-70750592 | Msa0040520:intron | 40.0% | |
| TGTGCATTCCTTCAGAATCT+CGG | - | chr1_1:70750605-70750624 | Msa0040520:intron | 40.0% | |
| GATTCACATTGCTAGTCACA+TGG | - | chr1_1:70750647-70750666 | Msa0040520:intron | 40.0% | |
| !!! | TGTGCCACCGTTTTTTTGTT+CGG | - | chr1_1:70750807-70750826 | Msa0040520:intron | 40.0% |
| AATACGCTATTCAAAGGGCA+TGG | + | chr1_1:70751128-70751147 | None:intergenic | 40.0% | |
| ATCACGGTAAAGTTCAAGAC+GGG | - | chr1_1:70751301-70751320 | Msa0040520:intron | 40.0% | |
| CGAGTATCAACCGATAATAG+AGG | + | chr1_1:70751400-70751419 | None:intergenic | 40.0% | |
| ! | GGTTGATACTCGTCAAACTT+TGG | - | chr1_1:70751408-70751427 | Msa0040520:intron | 40.0% |
| TACTGTTCAAACCAATCCTG+TGG | + | chr1_1:70751471-70751490 | None:intergenic | 40.0% | |
| GGTTTGAACAGTATCGTGAA+CGG | - | chr1_1:70751478-70751497 | Msa0040520:intron | 40.0% | |
| GTTTGAACAGTATCGTGAAC+GGG | - | chr1_1:70751479-70751498 | Msa0040520:intron | 40.0% | |
| ! | ACAGATGTAAGAGGTGCATA+TGG | + | chr1_1:70751564-70751583 | None:intergenic | 40.0% |
| ! | AGGTCTTTCAAAGACCGTTT+TGG | - | chr1_1:70751596-70751615 | Msa0040520:intron | 40.0% |
| GCATTAAACTTGGTCAGTGA+AGG | - | chr1_1:70751627-70751646 | Msa0040520:intron | 40.0% | |
| ! | TTGTATGTGATGTTCTGAGC+TGG | - | chr1_1:70751752-70751771 | Msa0040520:intron | 40.0% |
| ! | GGCTAGTCAGAACCAATAAA+AGG | + | chr1_1:70751796-70751815 | None:intergenic | 40.0% |
| CAAGTCACTCGTTAGATAAC+TGG | + | chr1_1:70751817-70751836 | None:intergenic | 40.0% | |
| CTAGTCTAGGAAACAGTACA+CGG | - | chr1_1:70751848-70751867 | Msa0040520:intron | 40.0% | |
| TAGTCTAGGAAACAGTACAC+GGG | - | chr1_1:70751849-70751868 | Msa0040520:intron | 40.0% | |
| GAAAATATGTGTTGGGGCAT+AGG | + | chr1_1:70752234-70752253 | None:intergenic | 40.0% | |
| GCACAAACAACAACACAATG+AGG | + | chr1_1:70752265-70752284 | None:intergenic | 40.0% | |
| !! | TTGTTTGTGCTGATTACGGT+CGG | - | chr1_1:70752275-70752294 | Msa0040520:intron | 40.0% |
| ! | CGTTTAGGACAACAATAGAC+CGG | + | chr1_1:70752365-70752384 | None:intergenic | 40.0% |
| TGAAGCAGAGTTGTCAATTG+TGG | - | chr1_1:70752449-70752468 | Msa0040520:intron | 40.0% | |
| AAAACACAAACACAGCCATC+AGG | + | chr1_1:70752704-70752723 | None:intergenic | 40.0% | |
| ! | CAGGTGGAAAGTGTAAGAAA+TGG | + | chr1_1:70752870-70752889 | None:intergenic | 40.0% |
| CAACAACAGATGCATTTCCT+GGG | + | chr1_1:70753481-70753500 | None:intergenic | 40.0% | |
| TCAACAACAGATGCATTTCC+TGG | + | chr1_1:70753482-70753501 | None:intergenic | 40.0% | |
| GTGTCCATAAATGTTGTAGC+TGG | - | chr1_1:70753514-70753533 | Msa0040520:intron | 40.0% | |
| TTCAAGCCTCAACTTGGAAA+TGG | - | chr1_1:70753587-70753606 | Msa0040520:intron | 40.0% | |
| CCAAATGATGAGGAGATGAA+AGG | + | chr1_1:70753623-70753642 | None:intergenic | 40.0% | |
| CCTTTCATCTCCTCATCATT+TGG | - | chr1_1:70753620-70753639 | Msa0040520:intron | 40.0% | |
| CCACTAAATGCCAAATGATG+AGG | + | chr1_1:70753633-70753652 | None:intergenic | 40.0% | |
| CCTCATCATTTGGCATTTAG+TGG | - | chr1_1:70753630-70753649 | Msa0040520:intron | 40.0% | |
| GAGAAGGGTAGAGATAAGAA+GGG | + | chr1_1:70753955-70753974 | None:intergenic | 40.0% | |
| AGAGAAGGGTAGAGATAAGA+AGG | + | chr1_1:70753956-70753975 | None:intergenic | 40.0% | |
| TCTCTACCCTTCTCTTCTAT+TGG | - | chr1_1:70753961-70753980 | Msa0040520:intron | 40.0% | |
| TGAACCTTCAATGAACTCAC+TGG | - | chr1_1:70754001-70754020 | Msa0040520:intron | 40.0% | |
| GTTTCCAGTGAGTTCATTGA+AGG | + | chr1_1:70754008-70754027 | None:intergenic | 40.0% | |
| CATTGAATGATAAGGAGGGT+GGG | - | chr1_1:70754071-70754090 | Msa0040520:intron | 40.0% | |
| AGGGCGATCTGTATCTTAAA+TGG | - | chr1_1:70754146-70754165 | Msa0040520:CDS | 40.0% | |
| ! | AACCTCCTGATCTGAAATCA+GGG | + | chr1_1:70754207-70754226 | None:intergenic | 40.0% |
| ! | AAACCTCCTGATCTGAAATC+AGG | + | chr1_1:70754208-70754227 | None:intergenic | 40.0% |
| ! | ATCAGGAGGTTTTCTTGTGT+CGG | - | chr1_1:70754216-70754235 | Msa0040520:CDS | 40.0% |
| AAAAGTGGTAGGGGAATATG+GGG | - | chr1_1:70754283-70754302 | Msa0040520:intron | 40.0% | |
| TCAAAATCCAACCACTGTGT+GGG | + | chr1_1:70754490-70754509 | None:intergenic | 40.0% | |
| TTGAGTTATTCTGCAGTGTG+TGG | - | chr1_1:70754506-70754525 | Msa0040520:CDS | 40.0% | |
| ATATTGACAAGAGGTGGCAT+TGG | - | chr1_1:70754587-70754606 | Msa0040520:intron | 40.0% | |
| ACTATGCCAAGAATCTGTGT+AGG | + | chr1_1:70754794-70754813 | None:intergenic | 40.0% | |
| ATAGCTGATATGATCAGCCA+TGG | - | chr1_1:70754910-70754929 | Msa0040520:CDS | 40.0% | |
| ! | TCTTTTTGTGTTGCCTCGAA+TGG | - | chr1_1:70754965-70754984 | Msa0040520:CDS | 40.0% |
| GTACACAAACTAACCATTCG+AGG | + | chr1_1:70754981-70755000 | None:intergenic | 40.0% | |
| TGTTCAAAAACTTGGCAGCA+AGG | + | chr1_1:70755150-70755169 | None:intergenic | 40.0% | |
| ! | TGCTGCCAAGTTTTTGAACA+TGG | - | chr1_1:70755150-70755169 | Msa0040520:CDS | 40.0% |
| GAATATCTGGCAAGAGTTTC+AGG | - | chr1_1:70755189-70755208 | Msa0040520:CDS | 40.0% | |
| TGTACCTTGAAGAACAGATG+GGG | + | chr1_1:70755218-70755237 | None:intergenic | 40.0% | |
| GTGTACCTTGAAGAACAGAT+GGG | + | chr1_1:70755219-70755238 | None:intergenic | 40.0% | |
| AGTGTACCTTGAAGAACAGA+TGG | + | chr1_1:70755220-70755239 | None:intergenic | 40.0% | |
| GCATCTTGTATAACCTTGTC+AGG | - | chr1_1:70755554-70755573 | Msa0040520:intron | 40.0% | |
| TTCAAGACAATTCCCTGACA+AGG | + | chr1_1:70755570-70755589 | None:intergenic | 40.0% | |
| !! | TCAGTGTTGTTTCTGGAGTT+TGG | - | chr1_1:70755815-70755834 | Msa0040520:CDS | 40.0% |
| !!! | GTTGTTTTTCTTGGCGTCAT+TGG | - | chr1_1:70755911-70755930 | Msa0040520:CDS | 40.0% |
| CGGTGATTGGAATGGGAAAA+AGG | + | chr1_1:70749514-70749533 | None:intergenic | 45.0% | |
| TCGAGATCGGTGATTGGAAT+GGG | + | chr1_1:70749521-70749540 | None:intergenic | 45.0% | |
| ATCGAGATCGGTGATTGGAA+TGG | + | chr1_1:70749522-70749541 | None:intergenic | 45.0% | |
| TGTGACAATCAGGCCAACTT+TGG | - | chr1_1:70750224-70750243 | Msa0040520:CDS | 45.0% | |
| CAGAGATGATGAGGCAACAT+TGG | + | chr1_1:70750309-70750328 | None:intergenic | 45.0% | |
| ATACTGTCATAGACTGTGGC+TGG | + | chr1_1:70750386-70750405 | None:intergenic | 45.0% | |
| AGGGATACTGTCATAGACTG+TGG | + | chr1_1:70750390-70750409 | None:intergenic | 45.0% | |
| GCTTGAAAATTGCGGGATGA+AGG | + | chr1_1:70750410-70750429 | None:intergenic | 45.0% | |
| TCCTTCAGAATCTCGGAACA+AGG | - | chr1_1:70750612-70750631 | Msa0040520:intron | 45.0% | |
| TACAGGCCTCAAACTACCAT+TGG | - | chr1_1:70750770-70750789 | Msa0040520:intron | 45.0% | |
| ACAGGCCTCAAACTACCATT+GGG | - | chr1_1:70750771-70750790 | Msa0040520:intron | 45.0% | |
| GATGTCCCAATGGTAGTTTG+AGG | + | chr1_1:70750779-70750798 | None:intergenic | 45.0% | |
| AACTACCATTGGGACATCCA+TGG | - | chr1_1:70750781-70750800 | Msa0040520:intron | 45.0% | |
| ATCGCCGAACAAAAAAACGG+TGG | + | chr1_1:70750814-70750833 | None:intergenic | 45.0% | |
| GCGATCGCCGAACAAAAAAA+CGG | + | chr1_1:70750817-70750836 | None:intergenic | 45.0% | |
| ! | ACTGCTGCTCTTTTTCTTGC+TGG | - | chr1_1:70751086-70751105 | Msa0040520:intron | 45.0% |
| ! | CTGCTGCTCTTTTTCTTGCT+GGG | - | chr1_1:70751087-70751106 | Msa0040520:intron | 45.0% |
| ACTCACAACAGGAAACCAGT+AGG | + | chr1_1:70751198-70751217 | None:intergenic | 45.0% | |
| CGTGTACTGTTTCCTAGACT+AGG | + | chr1_1:70751850-70751869 | None:intergenic | 45.0% | |
| AGTCTAGGAAACAGTACACG+GGG | - | chr1_1:70751850-70751869 | Msa0040520:intron | 45.0% | |
| !! | AAATTTTGGAGGGCCACCAA+GGG | + | chr1_1:70751943-70751962 | None:intergenic | 45.0% |
| !! | AAAATTTTGGAGGGCCACCA+AGG | + | chr1_1:70751944-70751963 | None:intergenic | 45.0% |
| !! | TTGGTGGCCCTCCAAAATTT+TGG | - | chr1_1:70751943-70751962 | Msa0040520:intron | 45.0% |
| ! | GCGGATTGATATGCTGTTCT+TGG | - | chr1_1:70752113-70752132 | Msa0040520:intron | 45.0% |
| AGATTGTCGTCAGCCATGTT+TGG | + | chr1_1:70752301-70752320 | None:intergenic | 45.0% | |
| AGTTGTCAATTGTGGATCGC+AGG | - | chr1_1:70752457-70752476 | Msa0040520:intron | 45.0% | |
| TGTGAGCCATTTCCAAGTTG+AGG | + | chr1_1:70753596-70753615 | None:intergenic | 45.0% | |
| GCATTGAATGATAAGGAGGG+TGG | - | chr1_1:70754070-70754089 | Msa0040520:intron | 45.0% | |
| AATCGCTTTCCACCTCAGAA+AGG | - | chr1_1:70754126-70754145 | Msa0040520:intron | 45.0% | |
| ATCGCTTTCCACCTCAGAAA+GGG | - | chr1_1:70754127-70754146 | Msa0040520:intron | 45.0% | |
| ! | ACCTCCTGATCTGAAATCAG+GGG | + | chr1_1:70754206-70754225 | None:intergenic | 45.0% |
| CTCAAAATCCAACCACTGTG+TGG | + | chr1_1:70754491-70754510 | None:intergenic | 45.0% | |
| GTATCCCAATGTACATGGCA+AGG | - | chr1_1:70754550-70754569 | Msa0040520:CDS | 45.0% | |
| AGAGCCTTGCCATGTACATT+GGG | + | chr1_1:70754557-70754576 | None:intergenic | 45.0% | |
| AAACCCCATCAAATTGCTGC+TGG | - | chr1_1:70755115-70755134 | Msa0040520:CDS | 45.0% | |
| AGCTCCAGCAGCAATTTGAT+GGG | + | chr1_1:70755122-70755141 | None:intergenic | 45.0% | |
| !! | CAGGTCATCAGTGTTGTTTC+TGG | - | chr1_1:70755808-70755827 | Msa0040520:CDS | 45.0% |
| ! | TTTTATGTGCATGCACGGGT+AGG | + | chr1_1:70755843-70755862 | None:intergenic | 45.0% |
| !!! | TTTTTTAAAAAAAAAAATGA+AGG | - | chr1_1:70752723-70752742 | Msa0040520:intron | 5.0% |
| GGTTATCGGTCCACCTATGA+TGG | - | chr1_1:70750140-70750159 | Msa0040520:CDS | 50.0% | |
| CAGGCCAACTTTGGCTACTA+TGG | - | chr1_1:70750233-70750252 | Msa0040520:CDS | 50.0% | |
| GCCAACTTTGGCTACTATGG+TGG | - | chr1_1:70750236-70750255 | Msa0040520:CDS | 50.0% | |
| GCCACCATAGTAGCCAAAGT+TGG | + | chr1_1:70750240-70750259 | None:intergenic | 50.0% | |
| !! | TTCTGGCTTTCTCCACGAAC+AGG | + | chr1_1:70750353-70750372 | None:intergenic | 50.0% |
| TGGCTGGAAGAGTGAACTTC+TGG | + | chr1_1:70750370-70750389 | None:intergenic | 50.0% | |
| ! | GCCTTGTTCCGAGATTCTGA+AGG | + | chr1_1:70750616-70750635 | None:intergenic | 50.0% |
| CAGAACCATGGATGTCCCAA+TGG | + | chr1_1:70750789-70750808 | None:intergenic | 50.0% | |
| AAAACGGTGGCACAGAACCA+TGG | + | chr1_1:70750801-70750820 | None:intergenic | 50.0% | |
| TGATTACGGTCGGCCAAACA+TGG | - | chr1_1:70752285-70752304 | Msa0040520:intron | 50.0% | |
| TTGACTCTGGTGGAAAGGAG+TGG | + | chr1_1:70752420-70752439 | None:intergenic | 50.0% | |
| !! | GTTGGACGGATTGTGAACTG+TGG | - | chr1_1:70753827-70753846 | Msa0040520:CDS | 50.0% |
| GATACAGATCGCCCTTTCTG+AGG | + | chr1_1:70754141-70754160 | None:intergenic | 50.0% | |
| ACCTCCCCTGATTTCAGATC+AGG | - | chr1_1:70754199-70754218 | Msa0040520:CDS | 50.0% | |
| ! | TCCTGATCTGAAATCAGGGG+AGG | + | chr1_1:70754203-70754222 | None:intergenic | 50.0% |
| TCCCCTGATTTCAGATCAGG+AGG | - | chr1_1:70754202-70754221 | Msa0040520:CDS | 50.0% | |
| GGTGTTCTGTTGCCACGAAA+CGG | - | chr1_1:70754237-70754256 | Msa0040520:CDS | 50.0% | |
| CAGTAGAGAGATCCGTTTCG+TGG | + | chr1_1:70754252-70754271 | None:intergenic | 50.0% | |
| TTTCTCCTATGCCCACACAG+TGG | - | chr1_1:70754476-70754495 | Msa0040520:intron | 50.0% | |
| GAGAGCCTTGCCATGTACAT+TGG | + | chr1_1:70754558-70754577 | None:intergenic | 50.0% | |
| GCTCCAGCAGCAATTTGATG+GGG | + | chr1_1:70755121-70755140 | None:intergenic | 50.0% | |
| CAGCTCCAGCAGCAATTTGA+TGG | + | chr1_1:70755123-70755142 | None:intergenic | 50.0% | |
| GCAACCCCATCTGTTCTTCA+AGG | - | chr1_1:70755211-70755230 | Msa0040520:CDS | 50.0% | |
| ATCCACTTCGCTGCTTCCTC+AGG | - | chr1_1:70749553-70749572 | Msa0040520:three_prime_UTR | 55.0% | |
| TACCTGAGGAAGCAGCGAAG+TGG | + | chr1_1:70749558-70749577 | None:intergenic | 55.0% | |
| ! | ATCAGGCTTCAGGCTAGCTG+AGG | + | chr1_1:70750465-70750484 | None:intergenic | 55.0% |
| GTATCGTGAACGGGTGCTTG+AGG | - | chr1_1:70751488-70751507 | Msa0040520:intron | 55.0% | |
| ! | CTGAGCTGGTGATGCTCTTC+AGG | - | chr1_1:70751766-70751785 | Msa0040520:intron | 55.0% |
| GTGTGGAGATCTTGTCGACG+AGG | - | chr1_1:70751912-70751931 | Msa0040520:intron | 55.0% | |
| TGTCGACGAGGAAGATCCCT+TGG | - | chr1_1:70751924-70751943 | Msa0040520:intron | 55.0% | |
| ATAGACCCTCTGCTGCCTGA+TGG | - | chr1_1:70752686-70752705 | Msa0040520:intron | 55.0% | |
| ! | ACAGATCGCCCTTTCTGAGG+TGG | + | chr1_1:70754138-70754157 | None:intergenic | 55.0% |
| TCCTATGCCCACACAGTGGT+TGG | - | chr1_1:70754480-70754499 | Msa0040520:intron | 55.0% | |
| TCCAACCACTGTGTGGGCAT+AGG | + | chr1_1:70754484-70754503 | None:intergenic | 55.0% | |
| TCCAGACCCAACTCTGCTGT+GGG | + | chr1_1:70754707-70754726 | None:intergenic | 55.0% | |
| TTCCAGACCCAACTCTGCTG+TGG | + | chr1_1:70754708-70754727 | None:intergenic | 55.0% | |
| GCAGGCTTCGTAGCTCTCTT+TGG | - | chr1_1:70755083-70755102 | Msa0040520:CDS | 55.0% | |
| CGACGAGGAAGATCCCTTGG+TGG | - | chr1_1:70751927-70751946 | Msa0040520:intron | 60.0% | |
| GTGTTGGGGCATAGGGCTCT+TGG | + | chr1_1:70752226-70752245 | None:intergenic | 60.0% | |
| CACAGCCATCAGGCAGCAGA+GGG | + | chr1_1:70752694-70752713 | None:intergenic | 60.0% | |
| ACACAGCCATCAGGCAGCAG+AGG | + | chr1_1:70752695-70752714 | None:intergenic | 60.0% | |
| AGAGCCTCCCACAGCAGAGT+TGG | - | chr1_1:70754697-70754716 | Msa0040520:intron | 60.0% | |
| GAGCCTCCCACAGCAGAGTT+GGG | - | chr1_1:70754698-70754717 | Msa0040520:intron | 60.0% | |
| AGACCCAACTCTGCTGTGGG+AGG | + | chr1_1:70754704-70754723 | None:intergenic | 60.0% | |
| TCCCACAGCAGAGTTGGGTC+TGG | - | chr1_1:70754703-70754722 | Msa0040520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70749385 | 70755968 | 70749385 | ID=Msa0040520;Name=Msa0040520 |
| chr1_1 | mRNA | 70749385 | 70755968 | 70749385 | ID=Msa0040520-mRNA-1;Parent=Msa0040520;Name=Msa0040520-mRNA-1;_AED=0.37;_eAED=0.37;_QI=37|0.71|0.87|0.87|0.85|0.87|8|244|440 |
| chr1_1 | exon | 70749385 | 70749660 | 70749385 | ID=Msa0040520-mRNA-1:exon:23355;Parent=Msa0040520-mRNA-1 |
| chr1_1 | exon | 70750121 | 70750266 | 70750121 | ID=Msa0040520-mRNA-1:exon:23354;Parent=Msa0040520-mRNA-1 |
| chr1_1 | exon | 70753704 | 70753879 | 70753704 | ID=Msa0040520-mRNA-1:exon:23353;Parent=Msa0040520-mRNA-1 |
| chr1_1 | exon | 70754142 | 70754276 | 70754142 | ID=Msa0040520-mRNA-1:exon:23352;Parent=Msa0040520-mRNA-1 |
| chr1_1 | exon | 70754497 | 70754578 | 70754497 | ID=Msa0040520-mRNA-1:exon:23351;Parent=Msa0040520-mRNA-1 |
| chr1_1 | exon | 70754711 | 70755266 | 70754711 | ID=Msa0040520-mRNA-1:exon:23350;Parent=Msa0040520-mRNA-1 |
| chr1_1 | exon | 70755400 | 70755442 | 70755400 | ID=Msa0040520-mRNA-1:exon:23349;Parent=Msa0040520-mRNA-1 |
| chr1_1 | exon | 70755779 | 70755968 | 70755779 | ID=Msa0040520-mRNA-1:exon:23348;Parent=Msa0040520-mRNA-1 |
| chr1_1 | five_prime_UTR | 70755932 | 70755968 | 70755932 | ID=Msa0040520-mRNA-1:five_prime_utr;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70755779 | 70755931 | 70755779 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70755400 | 70755442 | 70755400 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70754711 | 70755266 | 70754711 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70754497 | 70754578 | 70754497 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70754142 | 70754276 | 70754142 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70753704 | 70753879 | 70753704 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70750121 | 70750266 | 70750121 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | CDS | 70749629 | 70749660 | 70749629 | ID=Msa0040520-mRNA-1:cds;Parent=Msa0040520-mRNA-1 |
| chr1_1 | three_prime_UTR | 70749385 | 70749628 | 70749385 | ID=Msa0040520-mRNA-1:three_prime_utr;Parent=Msa0040520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
