Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136130 | sp|Q7XHI9|BH084_ARATH | 51.064 | 188 | 67 | 4 | 40 | 210 | 144 | 323 | 3.13e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136130 | G7IE61 | 93.981 | 216 | 13 | 0 | 1 | 216 | 115 | 330 | 7.50e-143 | 411 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0136130 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0136130 | Msa0136140 | 0.806400 | 8.379985e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136130 | MtrunA17_Chr1g0207301 | 93.981 | 216 | 13 | 0 | 1 | 216 | 165 | 380 | 1.08e-145 | 410 |
| Msa0136130 | MtrunA17_Chr5g0393721 | 64.000 | 175 | 59 | 3 | 43 | 215 | 143 | 315 | 5.06e-65 | 204 |
| Msa0136130 | MtrunA17_Chr1g0207311 | 51.905 | 210 | 90 | 5 | 2 | 210 | 83 | 282 | 2.53e-55 | 177 |
| Msa0136130 | MtrunA17_Chr3g0134741 | 52.147 | 163 | 77 | 1 | 47 | 209 | 153 | 314 | 2.43e-49 | 163 |
| Msa0136130 | MtrunA17_Chr1g0152651 | 51.235 | 162 | 69 | 2 | 38 | 199 | 198 | 349 | 8.49e-42 | 145 |
| Msa0136130 | MtrunA17_Chr5g0435021 | 70.000 | 60 | 18 | 0 | 133 | 192 | 227 | 286 | 1.17e-24 | 98.6 |
| Msa0136130 | MtrunA17_Chr8g0384141 | 64.286 | 56 | 20 | 0 | 133 | 188 | 123 | 178 | 1.19e-18 | 81.6 |
| Msa0136130 | MtrunA17_Chr4g0074161 | 43.333 | 90 | 49 | 1 | 100 | 187 | 180 | 269 | 1.88e-17 | 80.1 |
| Msa0136130 | MtrunA17_Chr7g0243041 | 58.182 | 55 | 23 | 0 | 131 | 185 | 33 | 87 | 3.46e-17 | 75.5 |
| Msa0136130 | MtrunA17_Chr3g0134001 | 49.254 | 67 | 34 | 0 | 120 | 186 | 167 | 233 | 5.86e-17 | 77.4 |
| Msa0136130 | MtrunA17_Chr1g0190731 | 47.059 | 68 | 36 | 0 | 120 | 187 | 189 | 256 | 3.40e-14 | 70.5 |
| Msa0136130 | MtrunA17_Chr5g0402031 | 42.105 | 76 | 44 | 0 | 140 | 215 | 121 | 196 | 1.40e-12 | 65.9 |
| Msa0136130 | MtrunA17_Chr1g0153241 | 43.548 | 62 | 35 | 0 | 140 | 201 | 101 | 162 | 1.50e-12 | 65.1 |
| Msa0136130 | MtrunA17_Chr1g0193321 | 50.000 | 48 | 24 | 0 | 140 | 187 | 478 | 525 | 5.01e-12 | 64.7 |
| Msa0136130 | MtrunA17_Chr3g0095391 | 36.264 | 91 | 46 | 3 | 110 | 193 | 288 | 373 | 1.43e-11 | 63.2 |
| Msa0136130 | MtrunA17_Chr1g0182791 | 36.145 | 83 | 46 | 1 | 112 | 187 | 298 | 380 | 5.37e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136130 | AT2G14760.1 | 51.064 | 188 | 67 | 4 | 40 | 210 | 144 | 323 | 3.18e-52 | 171 |
| Msa0136130 | AT2G14760.3 | 47.761 | 201 | 67 | 5 | 40 | 210 | 144 | 336 | 1.71e-48 | 162 |
| Msa0136130 | AT4G33880.1 | 78.652 | 89 | 19 | 0 | 118 | 206 | 260 | 348 | 1.47e-46 | 157 |
| Msa0136130 | AT1G27740.1 | 53.642 | 151 | 52 | 3 | 62 | 211 | 121 | 254 | 2.41e-46 | 154 |
| Msa0136130 | AT5G43175.1 | 54.140 | 157 | 57 | 2 | 70 | 211 | 63 | 219 | 3.11e-46 | 152 |
| Msa0136130 | AT5G37800.1 | 61.039 | 77 | 27 | 1 | 116 | 192 | 196 | 269 | 4.15e-25 | 100 |
| Msa0136130 | AT1G66470.1 | 69.841 | 63 | 19 | 0 | 130 | 192 | 201 | 263 | 4.36e-25 | 100 |
| Msa0136130 | AT4G30980.2 | 45.783 | 83 | 45 | 0 | 105 | 187 | 159 | 241 | 1.18e-17 | 80.5 |
| Msa0136130 | AT4G30980.1 | 45.783 | 83 | 45 | 0 | 105 | 187 | 111 | 193 | 1.35e-17 | 80.1 |
| Msa0136130 | AT2G24260.2 | 57.627 | 59 | 25 | 0 | 129 | 187 | 40 | 98 | 2.07e-17 | 78.6 |
| Msa0136130 | AT5G01305.1 | 48.649 | 74 | 33 | 1 | 123 | 191 | 36 | 109 | 4.59e-17 | 75.9 |
| Msa0136130 | AT2G24260.1 | 57.627 | 59 | 25 | 0 | 129 | 187 | 143 | 201 | 6.94e-17 | 78.2 |
| Msa0136130 | AT3G21330.1 | 55.357 | 56 | 25 | 0 | 131 | 186 | 276 | 331 | 1.48e-16 | 77.8 |
| Msa0136130 | AT5G58010.1 | 47.143 | 70 | 37 | 0 | 118 | 187 | 93 | 162 | 8.11e-16 | 74.7 |
| Msa0136130 | AT4G00120.1 | 51.852 | 54 | 26 | 0 | 133 | 186 | 121 | 174 | 1.91e-15 | 72.4 |
| Msa0136130 | AT4G36930.1 | 39.189 | 74 | 45 | 0 | 131 | 204 | 198 | 271 | 4.21e-12 | 64.7 |
| Msa0136130 | AT2G20180.7 | 38.824 | 85 | 41 | 2 | 140 | 215 | 223 | 305 | 5.27e-12 | 64.7 |
| Msa0136130 | AT2G20180.1 | 38.824 | 85 | 41 | 2 | 140 | 215 | 223 | 305 | 5.27e-12 | 64.7 |
| Msa0136130 | AT2G20180.5 | 38.824 | 85 | 41 | 2 | 140 | 215 | 223 | 305 | 5.27e-12 | 64.7 |
| Msa0136130 | AT1G09530.3 | 39.394 | 66 | 40 | 0 | 140 | 205 | 353 | 418 | 5.89e-12 | 64.7 |
| Msa0136130 | AT1G09530.2 | 39.394 | 66 | 40 | 0 | 140 | 205 | 353 | 418 | 5.89e-12 | 64.7 |
| Msa0136130 | AT1G09530.5 | 39.394 | 66 | 40 | 0 | 140 | 205 | 353 | 418 | 5.89e-12 | 64.7 |
| Msa0136130 | AT1G09530.1 | 39.394 | 66 | 40 | 0 | 140 | 205 | 353 | 418 | 5.89e-12 | 64.7 |
| Msa0136130 | AT1G09530.4 | 39.394 | 66 | 40 | 0 | 140 | 205 | 353 | 418 | 5.89e-12 | 64.7 |
| Msa0136130 | AT1G09530.6 | 39.394 | 66 | 40 | 0 | 140 | 205 | 353 | 418 | 5.89e-12 | 64.7 |
| Msa0136130 | AT2G20180.4 | 38.824 | 85 | 41 | 2 | 140 | 215 | 294 | 376 | 8.94e-12 | 63.9 |
| Msa0136130 | AT2G20180.6 | 38.824 | 85 | 41 | 2 | 140 | 215 | 294 | 376 | 8.94e-12 | 63.9 |
| Msa0136130 | AT2G20180.2 | 38.824 | 85 | 41 | 2 | 140 | 215 | 294 | 376 | 8.94e-12 | 63.9 |
| Msa0136130 | AT2G20180.3 | 38.824 | 85 | 41 | 2 | 140 | 215 | 294 | 376 | 8.94e-12 | 63.9 |
| Msa0136130 | AT4G28790.1 | 38.095 | 84 | 44 | 2 | 140 | 216 | 287 | 369 | 1.69e-11 | 63.2 |
| Msa0136130 | AT4G00050.2 | 50.000 | 48 | 24 | 0 | 140 | 187 | 121 | 168 | 3.56e-11 | 61.6 |
| Msa0136130 | AT4G00050.1 | 50.000 | 48 | 24 | 0 | 140 | 187 | 223 | 270 | 5.28e-11 | 61.6 |
| Msa0136130 | AT4G00050.3 | 50.000 | 48 | 24 | 0 | 140 | 187 | 223 | 270 | 6.57e-11 | 61.2 |
| Msa0136130 | AT2G46970.1 | 31.034 | 87 | 53 | 2 | 137 | 216 | 236 | 322 | 6.60e-11 | 61.2 |
| Msa0136130 | AT2G46970.2 | 31.034 | 87 | 53 | 2 | 137 | 216 | 205 | 291 | 6.78e-11 | 61.2 |
| Msa0136130 | AT2G46970.3 | 31.034 | 87 | 53 | 2 | 137 | 216 | 214 | 300 | 8.31e-11 | 61.2 |
Find 37 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACAGATTTGAAGTTAA+AGG | 0.203807 | 1_3:-67928799 | Msa0136130:CDS |
| TCAAATCTGTTGAATCATTC+TGG | 0.235168 | 1_3:+67928808 | Msa0136120:intron |
| CATTAGGGACTAGGCTTTGC+AGG | 0.277798 | 1_3:+67928551 | Msa0136120:intron |
| AACACTATAAGTGCTAAAAT+TGG | 0.312512 | 1_3:+67929406 | Msa0136120:intron |
| TTCATTCCATTGTAAGCAAT+TGG | 0.326950 | 1_3:+67928190 | Msa0136120:intron |
| TCAACAGATTTGAAGTTAAA+GGG | 0.332099 | 1_3:-67928798 | Msa0136130:CDS |
| CCTTGGTTCCATTAGGGACT+AGG | 0.345834 | 1_3:+67928542 | Msa0136120:intron |
| GAAAACACTTCTGAAGAGTT+TGG | 0.361815 | 1_3:-67929356 | Msa0136130:CDS |
| TTTAGCACTTATAGTGTTCA+AGG | 0.374420 | 1_3:-67929401 | Msa0136130:CDS |
| AAAGCTACCTTGGTTCCATT+AGG | 0.376583 | 1_3:+67928535 | Msa0136120:intron |
| GGATGAAAGTCATGATCTTC+AGG | 0.377305 | 1_3:-67928907 | Msa0136130:CDS |
| ACAAGAGAAATGTGAAATCT+AGG | 0.391427 | 1_3:-67928968 | Msa0136130:CDS |
| AAGCTACCTTGGTTCCATTA+GGG | 0.399329 | 1_3:+67928536 | Msa0136120:intron |
| GCTATATATCTATGGTAGTT+CGG | 0.420297 | 1_3:+67928138 | Msa0136120:intron |
| CTGCAAAGCCTAGTCCCTAA+TGG | 0.420311 | 1_3:-67928550 | Msa0136130:CDS |
| AGAGTTTGGTAAGATGTGTT+TGG | 0.424823 | 1_3:-67929342 | Msa0136130:CDS |
| TATATCTATGGTAGTTCGGT+TGG | 0.463306 | 1_3:+67928142 | Msa0136120:intron |
| AAGGGAAAATCAAAATGTAA+TGG | 0.488727 | 1_3:-67928780 | Msa0136130:CDS |
| ATATCTATGGTAGTTCGGTT+GGG | 0.502830 | 1_3:+67928143 | Msa0136120:intron |
| AAGATCTAGGAGCTCGATGA+AGG | 0.519130 | 1_3:-67929273 | Msa0136130:intron |
| TTCTGAGCTCTGATGATCAC+TGG | 0.521996 | 1_3:-67928222 | Msa0136130:CDS |
| GCTTACAATGGAATGAACAT+TGG | 0.525606 | 1_3:-67928184 | Msa0136130:CDS |
| GTTCGGTTGGGATAATGTTG+AGG | 0.541601 | 1_3:+67928155 | Msa0136120:intron |
| GTTCAAAAGCAACGCTGACG+AGG | 0.565933 | 1_3:-67928928 | Msa0136130:CDS |
| GTTCTTGATACACTCTTTCG+CGG | 0.570482 | 1_3:+67929316 | Msa0136120:intron |
| TCAGGAGCAGAATTTGAGCT+CGG | 0.588142 | 1_3:-67928889 | Msa0136130:CDS |
| GCTTTAAAGAAGCTAAATGC+AGG | 0.589797 | 1_3:-67928849 | Msa0136130:CDS |
| GGATATCAGCACCATGCTTG+AGG | 0.592275 | 1_3:-67928432 | Msa0136130:CDS |
| TATGCTCCAATTGCTTACAA+TGG | 0.606083 | 1_3:-67928196 | Msa0136130:CDS |
| GGAAAATCAAAATGTAATGG+AGG | 0.608687 | 1_3:-67928777 | Msa0136130:CDS |
| TTGCACAGCTTCCTCAAGCA+TGG | 0.610000 | 1_3:+67928421 | Msa0136120:intron |
| ATAGACACCTTGTGGATCAG+AGG | 0.616647 | 1_3:+67928749 | Msa0136120:intron |
| ATCTAGGAAGAAACCAAAGT+CGG | 0.617908 | 1_3:-67928952 | Msa0136130:CDS |
| CCTAGTCCCTAATGGAACCA+AGG | 0.646129 | 1_3:-67928542 | Msa0136130:intron |
| GGTTCTGCCTCTGATCCACA+AGG | 0.648330 | 1_3:-67928756 | Msa0136130:CDS |
| GGAGCAGAATTTGAGCTCGG+AGG | 0.653936 | 1_3:-67928886 | Msa0136130:CDS |
| AGAGTGTATCAAGAACAACC+TGG | 0.703200 | 1_3:-67929309 | Msa0136130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAACTATTTTTAAATAAT+TGG | - | chr1_3:67929059-67929078 | Msa0136130:intron | 10.0% |
| !! | TATTTCAAGAATATATAATA+TGG | + | chr1_3:67929271-67929290 | Msa0136120:intron | 10.0% |
| !!! | TTCAACTATTTTTAAATAAT+TGG | - | chr1_3:67929059-67929078 | Msa0136130:intron | 10.0% |
| !! | TATTTCAAGAATATATAATA+TGG | + | chr1_3:67929271-67929290 | Msa0136120:intron | 10.0% |
| !! | TAAATTTATGATTCATATCA+AGG | + | chr1_3:67929228-67929247 | Msa0136120:intron | 15.0% |
| !! | TAAATTTATGATTCATATCA+AGG | + | chr1_3:67929228-67929247 | Msa0136120:intron | 15.0% |
| !! | GGTATTATGTATAAGAAAAA+AGG | - | chr1_3:67928354-67928373 | Msa0136130:intron | 20.0% |
| !! | AACAAATAGAAACATGTATT+TGG | + | chr1_3:67928404-67928423 | Msa0136120:intron | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | - | chr1_3:67928416-67928435 | Msa0136130:CDS | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | - | chr1_3:67928560-67928579 | Msa0136130:CDS | 20.0% |
| !!! | TTATTAGCAATGGTATTTTT+AGG | + | chr1_3:67928864-67928883 | Msa0136120:intron | 20.0% |
| !!! | CTGTGATTTTGAATTATTAA+AGG | - | chr1_3:67928914-67928933 | Msa0136130:CDS | 20.0% |
| !!! | TTTTCTTACTCATGAAATAT+AGG | - | chr1_3:67929104-67929123 | Msa0136130:intron | 20.0% |
| !!! | CTTATGTTTTTACCTTAATT+TGG | + | chr1_3:67929185-67929204 | Msa0136120:intron | 20.0% |
| !! | CAAATTAAGGTAAAAACATA+AGG | - | chr1_3:67929183-67929202 | Msa0136130:intron | 20.0% |
| !! | GGTATTATGTATAAGAAAAA+AGG | - | chr1_3:67928354-67928373 | Msa0136130:intron | 20.0% |
| !! | AACAAATAGAAACATGTATT+TGG | + | chr1_3:67928404-67928423 | Msa0136120:intron | 20.0% |
| !!! | TATTTGTTTACATTTAAGAC+CGG | - | chr1_3:67928416-67928435 | Msa0136130:CDS | 20.0% |
| !!! | TTTTGATTTAATGATTCCAT+AGG | - | chr1_3:67928560-67928579 | Msa0136130:CDS | 20.0% |
| !!! | TTATTAGCAATGGTATTTTT+AGG | + | chr1_3:67928864-67928883 | Msa0136120:intron | 20.0% |
| !!! | CTGTGATTTTGAATTATTAA+AGG | - | chr1_3:67928914-67928933 | Msa0136130:CDS | 20.0% |
| !!! | TTTTCTTACTCATGAAATAT+AGG | - | chr1_3:67929104-67929123 | Msa0136130:intron | 20.0% |
| !!! | CTTATGTTTTTACCTTAATT+TGG | + | chr1_3:67929185-67929204 | Msa0136120:intron | 20.0% |
| !! | CAAATTAAGGTAAAAACATA+AGG | - | chr1_3:67929183-67929202 | Msa0136130:intron | 20.0% |
| ! | AACACTATAAGTGCTAAAAT+TGG | + | chr1_3:67928157-67928176 | Msa0136120:intron | 25.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | - | chr1_3:67928274-67928293 | Msa0136130:intron | 25.0% |
| ! | TTCTTATACATAATACCAGA+GGG | + | chr1_3:67928351-67928370 | Msa0136120:intron | 25.0% |
| ! | TTTCTTATACATAATACCAG+AGG | + | chr1_3:67928352-67928371 | Msa0136120:intron | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | - | chr1_3:67928517-67928536 | Msa0136130:intron | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | - | chr1_3:67928761-67928780 | Msa0136130:CDS | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | - | chr1_3:67928762-67928781 | Msa0136130:CDS | 25.0% |
| ! | AAGGGAAAATCAAAATGTAA+TGG | - | chr1_3:67928780-67928799 | Msa0136130:CDS | 25.0% |
| !!! | GTATTTTTAGGAAATGCAAT+TGG | + | chr1_3:67928852-67928871 | Msa0136120:intron | 25.0% |
| ! | GGACATAAAATTATTAGCAA+TGG | + | chr1_3:67928874-67928893 | Msa0136120:intron | 25.0% |
| ! | AATTCAAAATCACAGTACTT+TGG | + | chr1_3:67928909-67928928 | Msa0136120:intron | 25.0% |
| ! | AACACTATAAGTGCTAAAAT+TGG | + | chr1_3:67928157-67928176 | Msa0136120:intron | 25.0% |
| ! | AAAAATCAGGAAAAAGATCT+AGG | - | chr1_3:67928274-67928293 | Msa0136130:intron | 25.0% |
| ! | TTCTTATACATAATACCAGA+GGG | + | chr1_3:67928351-67928370 | Msa0136120:intron | 25.0% |
| ! | TTTCTTATACATAATACCAG+AGG | + | chr1_3:67928352-67928371 | Msa0136120:intron | 25.0% |
| !!! | TCAATGTGTTTAATTTTGTC+TGG | - | chr1_3:67928517-67928536 | Msa0136130:intron | 25.0% |
| !! | TTCAACAGATTTGAAGTTAA+AGG | - | chr1_3:67928761-67928780 | Msa0136130:CDS | 25.0% |
| !! | TCAACAGATTTGAAGTTAAA+GGG | - | chr1_3:67928762-67928781 | Msa0136130:CDS | 25.0% |
| ! | AAGGGAAAATCAAAATGTAA+TGG | - | chr1_3:67928780-67928799 | Msa0136130:CDS | 25.0% |
| !!! | GTATTTTTAGGAAATGCAAT+TGG | + | chr1_3:67928852-67928871 | Msa0136120:intron | 25.0% |
| ! | GGACATAAAATTATTAGCAA+TGG | + | chr1_3:67928874-67928893 | Msa0136120:intron | 25.0% |
| ! | AATTCAAAATCACAGTACTT+TGG | + | chr1_3:67928909-67928928 | Msa0136120:intron | 25.0% |
| TTTAGCACTTATAGTGTTCA+AGG | - | chr1_3:67928159-67928178 | Msa0136130:CDS | 30.0% | |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | + | chr1_3:67928194-67928213 | Msa0136120:intron | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | + | chr1_3:67928272-67928291 | Msa0136120:intron | 30.0% |
| ACAAGAGAAATGTGAAATCT+AGG | - | chr1_3:67928592-67928611 | Msa0136130:intron | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | + | chr1_3:67928755-67928774 | Msa0136120:intron | 30.0% | |
| GGAAAATCAAAATGTAATGG+AGG | - | chr1_3:67928783-67928802 | Msa0136130:CDS | 30.0% | |
| GTACTTTGGACAAAAATTCA+AGG | + | chr1_3:67928895-67928914 | Msa0136120:intron | 30.0% | |
| TCTTACTCATGAAATATAGG+TGG | - | chr1_3:67929107-67929126 | Msa0136130:intron | 30.0% | |
| ! | GCAATATGTGAAGTTTTTAC+AGG | - | chr1_3:67929158-67929177 | Msa0136130:intron | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | - | chr1_3:67929170-67929189 | Msa0136130:intron | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1_3:67929373-67929392 | Msa0136120:intron | 30.0% | |
| TTTAGCACTTATAGTGTTCA+AGG | - | chr1_3:67928159-67928178 | Msa0136130:CDS | 30.0% | |
| ! | AAGTGTTTTCAGTTATCTGT+TGG | + | chr1_3:67928194-67928213 | Msa0136120:intron | 30.0% |
| ! | ATCTTTTTCCTGATTTTTCC+AGG | + | chr1_3:67928272-67928291 | Msa0136120:intron | 30.0% |
| ACAAGAGAAATGTGAAATCT+AGG | - | chr1_3:67928592-67928611 | Msa0136130:intron | 30.0% | |
| TCAAATCTGTTGAATCATTC+TGG | + | chr1_3:67928755-67928774 | Msa0136120:intron | 30.0% | |
| GGAAAATCAAAATGTAATGG+AGG | - | chr1_3:67928783-67928802 | Msa0136130:CDS | 30.0% | |
| GTACTTTGGACAAAAATTCA+AGG | + | chr1_3:67928895-67928914 | Msa0136120:intron | 30.0% | |
| TCTTACTCATGAAATATAGG+TGG | - | chr1_3:67929107-67929126 | Msa0136130:intron | 30.0% | |
| ! | GCAATATGTGAAGTTTTTAC+AGG | - | chr1_3:67929158-67929177 | Msa0136130:intron | 30.0% |
| ! | GTTTTTACAGGTCCAAATTA+AGG | - | chr1_3:67929170-67929189 | Msa0136130:intron | 30.0% |
| TTCATTCCATTGTAAGCAAT+TGG | + | chr1_3:67929373-67929392 | Msa0136120:intron | 30.0% | |
| ! | GAAAACACTTCTGAAGAGTT+TGG | - | chr1_3:67928204-67928223 | Msa0136130:CDS | 35.0% |
| AGAGTTTGGTAAGATGTGTT+TGG | - | chr1_3:67928218-67928237 | Msa0136130:CDS | 35.0% | |
| AAGAACAACCTGGAAAAATC+AGG | - | chr1_3:67928261-67928280 | Msa0136130:intron | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | - | chr1_3:67928333-67928352 | Msa0136130:intron | 35.0% | |
| ! | TTGTTTACATTTAAGACCGG+AGG | - | chr1_3:67928419-67928438 | Msa0136130:CDS | 35.0% |
| ! | TGTTTACATTTAAGACCGGA+GGG | - | chr1_3:67928420-67928439 | Msa0136130:CDS | 35.0% |
| !!! | TCCTGCTTTTTTTATAGTCC+TGG | - | chr1_3:67928454-67928473 | Msa0136130:intron | 35.0% |
| ACCAGGACTATAAAAAAAGC+AGG | + | chr1_3:67928458-67928477 | Msa0136120:intron | 35.0% | |
| GTGATATTGTGACAAGCATT+TGG | - | chr1_3:67928476-67928495 | Msa0136130:intron | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | + | chr1_3:67928579-67928598 | Msa0136120:intron | 35.0% |
| ATCTAGGAAGAAACCAAAGT+CGG | - | chr1_3:67928608-67928627 | Msa0136130:intron | 35.0% | |
| !! | GCTTTAAAGAAGCTAAATGC+AGG | - | chr1_3:67928711-67928730 | Msa0136130:intron | 35.0% |
| ATGATTCATATCAAGGCCTA+AGG | + | chr1_3:67929221-67929240 | Msa0136120:intron | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_3:67929364-67929383 | Msa0136130:CDS | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr1_3:67929376-67929395 | Msa0136130:CDS | 35.0% | |
| ! | GAAAACACTTCTGAAGAGTT+TGG | - | chr1_3:67928204-67928223 | Msa0136130:CDS | 35.0% |
| AGAGTTTGGTAAGATGTGTT+TGG | - | chr1_3:67928218-67928237 | Msa0136130:CDS | 35.0% | |
| AAGAACAACCTGGAAAAATC+AGG | - | chr1_3:67928261-67928280 | Msa0136130:intron | 35.0% | |
| TCTTTGTAAATTACTCCCTC+TGG | - | chr1_3:67928333-67928352 | Msa0136130:intron | 35.0% | |
| ! | TTGTTTACATTTAAGACCGG+AGG | - | chr1_3:67928419-67928438 | Msa0136130:CDS | 35.0% |
| ! | TGTTTACATTTAAGACCGGA+GGG | - | chr1_3:67928420-67928439 | Msa0136130:CDS | 35.0% |
| !!! | TCCTGCTTTTTTTATAGTCC+TGG | - | chr1_3:67928454-67928473 | Msa0136130:intron | 35.0% |
| ACCAGGACTATAAAAAAAGC+AGG | + | chr1_3:67928458-67928477 | Msa0136120:intron | 35.0% | |
| GTGATATTGTGACAAGCATT+TGG | - | chr1_3:67928476-67928495 | Msa0136130:intron | 35.0% | |
| ! | CTCTTGTTCTTTTGTACCTA+TGG | + | chr1_3:67928579-67928598 | Msa0136120:intron | 35.0% |
| ATCTAGGAAGAAACCAAAGT+CGG | - | chr1_3:67928608-67928627 | Msa0136130:intron | 35.0% | |
| !! | GCTTTAAAGAAGCTAAATGC+AGG | - | chr1_3:67928711-67928730 | Msa0136130:intron | 35.0% |
| ATGATTCATATCAAGGCCTA+AGG | + | chr1_3:67929221-67929240 | Msa0136120:intron | 35.0% | |
| TATGCTCCAATTGCTTACAA+TGG | - | chr1_3:67929364-67929383 | Msa0136130:CDS | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr1_3:67929376-67929395 | Msa0136130:CDS | 35.0% | |
| GTTCTTGATACACTCTTTCG+CGG | + | chr1_3:67928247-67928266 | Msa0136120:intron | 40.0% | |
| AGAGTGTATCAAGAACAACC+TGG | - | chr1_3:67928251-67928270 | Msa0136130:intron | 40.0% | |
| ! | AAGAAAAAAGGTGCGTGTGT+TGG | - | chr1_3:67928366-67928385 | Msa0136130:intron | 40.0% |
| ATGCTTGTCACAATATCACC+AGG | + | chr1_3:67928475-67928494 | Msa0136120:intron | 40.0% | |
| !! | TTGCTTTTGAACTCCGACTT+TGG | + | chr1_3:67928624-67928643 | Msa0136120:intron | 40.0% |
| GGATGAAAGTCATGATCTTC+AGG | - | chr1_3:67928653-67928672 | Msa0136130:intron | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | + | chr1_3:67928822-67928841 | Msa0136120:intron | 40.0% |
| AAGCTACCTTGGTTCCATTA+GGG | + | chr1_3:67929027-67929046 | Msa0136120:intron | 40.0% | |
| AAAGCTACCTTGGTTCCATT+AGG | + | chr1_3:67929028-67929047 | Msa0136120:intron | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | + | chr1_3:67929038-67929057 | Msa0136120:intron | 40.0% | |
| ATTCATATCAAGGCCTAAGG+AGG | + | chr1_3:67929218-67929237 | Msa0136120:intron | 40.0% | |
| GTTCTTGATACACTCTTTCG+CGG | + | chr1_3:67928247-67928266 | Msa0136120:intron | 40.0% | |
| AGAGTGTATCAAGAACAACC+TGG | - | chr1_3:67928251-67928270 | Msa0136130:intron | 40.0% | |
| ! | AAGAAAAAAGGTGCGTGTGT+TGG | - | chr1_3:67928366-67928385 | Msa0136130:intron | 40.0% |
| ATGCTTGTCACAATATCACC+AGG | + | chr1_3:67928475-67928494 | Msa0136120:intron | 40.0% | |
| !! | TTGCTTTTGAACTCCGACTT+TGG | + | chr1_3:67928624-67928643 | Msa0136120:intron | 40.0% |
| GGATGAAAGTCATGATCTTC+AGG | - | chr1_3:67928653-67928672 | Msa0136130:intron | 40.0% | |
| ! | ACTTTTGCATAGACACCTTG+TGG | + | chr1_3:67928822-67928841 | Msa0136120:intron | 40.0% |
| AAGCTACCTTGGTTCCATTA+GGG | + | chr1_3:67929027-67929046 | Msa0136120:intron | 40.0% | |
| AAAGCTACCTTGGTTCCATT+AGG | + | chr1_3:67929028-67929047 | Msa0136120:intron | 40.0% | |
| TGTCATTGAGAAAGCTACCT+TGG | + | chr1_3:67929038-67929057 | Msa0136120:intron | 40.0% | |
| ATTCATATCAAGGCCTAAGG+AGG | + | chr1_3:67929218-67929237 | Msa0136120:intron | 40.0% | |
| AAGATCTAGGAGCTCGATGA+AGG | - | chr1_3:67928287-67928306 | Msa0136130:intron | 45.0% | |
| TCAGGAGCAGAATTTGAGCT+CGG | - | chr1_3:67928671-67928690 | Msa0136130:intron | 45.0% | |
| ATAGACACCTTGTGGATCAG+AGG | + | chr1_3:67928814-67928833 | Msa0136120:intron | 45.0% | |
| AAGGATCCTCATTCCTCCTT+AGG | - | chr1_3:67929202-67929221 | Msa0136130:intron | 45.0% | |
| ! | TTCTGAGCTCTGATGATCAC+TGG | - | chr1_3:67929338-67929357 | Msa0136130:CDS | 45.0% |
| GTTCGGTTGGGATAATGTTG+AGG | + | chr1_3:67929408-67929427 | Msa0136120:intron | 45.0% | |
| AAGATCTAGGAGCTCGATGA+AGG | - | chr1_3:67928287-67928306 | Msa0136130:intron | 45.0% | |
| TCAGGAGCAGAATTTGAGCT+CGG | - | chr1_3:67928671-67928690 | Msa0136130:intron | 45.0% | |
| ATAGACACCTTGTGGATCAG+AGG | + | chr1_3:67928814-67928833 | Msa0136120:intron | 45.0% | |
| AAGGATCCTCATTCCTCCTT+AGG | - | chr1_3:67929202-67929221 | Msa0136130:intron | 45.0% | |
| ! | TTCTGAGCTCTGATGATCAC+TGG | - | chr1_3:67929338-67929357 | Msa0136130:CDS | 45.0% |
| GTTCGGTTGGGATAATGTTG+AGG | + | chr1_3:67929408-67929427 | Msa0136120:intron | 45.0% | |
| TCTAGGAGCTCGATGAAGGT+AGG | - | chr1_3:67928291-67928310 | Msa0136130:intron | 50.0% | |
| AGGAAGTGACTTACTCCCTC+CGG | + | chr1_3:67928438-67928457 | Msa0136120:intron | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | - | chr1_3:67928632-67928651 | Msa0136130:intron | 50.0% | |
| CATTAGGGACTAGGCTTTGC+AGG | + | chr1_3:67929012-67929031 | Msa0136120:intron | 50.0% | |
| CTGCAAAGCCTAGTCCCTAA+TGG | - | chr1_3:67929010-67929029 | Msa0136130:intron | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | + | chr1_3:67929021-67929040 | Msa0136120:intron | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | - | chr1_3:67929018-67929037 | Msa0136130:intron | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr1_3:67929128-67929147 | Msa0136130:intron | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | + | chr1_3:67929142-67929161 | Msa0136120:intron | 50.0% | |
| TCAAGGCCTAAGGAGGAATG+AGG | + | chr1_3:67929211-67929230 | Msa0136120:intron | 50.0% | |
| TCTAGGAGCTCGATGAAGGT+AGG | - | chr1_3:67928291-67928310 | Msa0136130:intron | 50.0% | |
| AGGAAGTGACTTACTCCCTC+CGG | + | chr1_3:67928438-67928457 | Msa0136120:intron | 50.0% | |
| GTTCAAAAGCAACGCTGACG+AGG | - | chr1_3:67928632-67928651 | Msa0136130:intron | 50.0% | |
| CATTAGGGACTAGGCTTTGC+AGG | + | chr1_3:67929012-67929031 | Msa0136120:intron | 50.0% | |
| CTGCAAAGCCTAGTCCCTAA+TGG | - | chr1_3:67929010-67929029 | Msa0136130:intron | 50.0% | |
| CCTTGGTTCCATTAGGGACT+AGG | + | chr1_3:67929021-67929040 | Msa0136120:intron | 50.0% | |
| CCTAGTCCCTAATGGAACCA+AGG | - | chr1_3:67929018-67929037 | Msa0136130:intron | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr1_3:67929128-67929147 | Msa0136130:intron | 50.0% | |
| TTGCACAGCTTCCTCAAGCA+TGG | + | chr1_3:67929142-67929161 | Msa0136120:intron | 50.0% | |
| TCAAGGCCTAAGGAGGAATG+AGG | + | chr1_3:67929211-67929230 | Msa0136120:intron | 50.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | - | chr1_3:67928674-67928693 | Msa0136130:intron | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | - | chr1_3:67928804-67928823 | Msa0136130:CDS | 55.0% | |
| GGAGCAGAATTTGAGCTCGG+AGG | - | chr1_3:67928674-67928693 | Msa0136130:intron | 55.0% | |
| GGTTCTGCCTCTGATCCACA+AGG | - | chr1_3:67928804-67928823 | Msa0136130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67928147 | 67929435 | 67928147 | ID=Msa0136130;Name=Msa0136130 |
| chr1_3 | mRNA | 67928147 | 67929435 | 67928147 | ID=Msa0136130-mRNA-1;Parent=Msa0136130;Name=Msa0136130-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|5|0|216 |
| chr1_3 | exon | 67929274 | 67929435 | 67929274 | ID=Msa0136130-mRNA-1:exon:23448;Parent=Msa0136130-mRNA-1 |
| chr1_3 | exon | 67928743 | 67929000 | 67928743 | ID=Msa0136130-mRNA-1:exon:23447;Parent=Msa0136130-mRNA-1 |
| chr1_3 | exon | 67928543 | 67928608 | 67928543 | ID=Msa0136130-mRNA-1:exon:23446;Parent=Msa0136130-mRNA-1 |
| chr1_3 | exon | 67928391 | 67928456 | 67928391 | ID=Msa0136130-mRNA-1:exon:23445;Parent=Msa0136130-mRNA-1 |
| chr1_3 | exon | 67928147 | 67928245 | 67928147 | ID=Msa0136130-mRNA-1:exon:23444;Parent=Msa0136130-mRNA-1 |
| chr1_3 | CDS | 67929274 | 67929435 | 67929274 | ID=Msa0136130-mRNA-1:cds;Parent=Msa0136130-mRNA-1 |
| chr1_3 | CDS | 67928743 | 67929000 | 67928743 | ID=Msa0136130-mRNA-1:cds;Parent=Msa0136130-mRNA-1 |
| chr1_3 | CDS | 67928543 | 67928608 | 67928543 | ID=Msa0136130-mRNA-1:cds;Parent=Msa0136130-mRNA-1 |
| chr1_3 | CDS | 67928391 | 67928456 | 67928391 | ID=Msa0136130-mRNA-1:cds;Parent=Msa0136130-mRNA-1 |
| chr1_3 | CDS | 67928147 | 67928245 | 67928147 | ID=Msa0136130-mRNA-1:cds;Parent=Msa0136130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
