AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0136170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136170 MtrunA17_Chr1g0207331 99.115 339 3 0 1 339 1 339 0.0 701
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0136170 AT2G14835.2 68.696 345 94 5 1 334 1 342 6.92e-172 481
Msa0136170 AT2G14835.1 68.696 345 94 5 1 334 1 342 6.92e-172 481

Find 119 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAGCATTGCTTCCTTTC+TGG 0.064409 1_3:-67963921 Msa0136170:CDS
CTATATGTTGTTCACTTATT+TGG 0.067901 1_3:-67962990 Msa0136170:three_prime_UTR
TCCCGAATCTTTCACGCTTT+TGG 0.189747 1_3:+67965407 None:intergenic
CCAAATACCTTGTGAGAATT+AGG 0.197104 1_3:+67963235 None:intergenic
TATATCATATCAGATTTAAT+TGG 0.202488 1_3:-67968094 Msa0136170:five_prime_UTR
TGGATTATGTTGTAATTATC+TGG 0.219578 1_3:-67962970 Msa0136170:three_prime_UTR
CAGGGCATGCATGGCAACTA+TGG 0.234748 1_3:-67963333 Msa0136170:CDS
TTTGATCCATCTTTCCTTGC+AGG 0.244898 1_3:+67963865 None:intergenic
TTGCTCTTTGCCCTCAGTTT+TGG 0.259577 1_3:-67963045 Msa0136170:three_prime_UTR
CTGAGGGCAAAGAGCAAATA+TGG 0.284386 1_3:+67963051 None:intergenic
CTTCTGATCCATTGATTAGT+AGG 0.287933 1_3:-67964521 Msa0136170:CDS
CAGACCACCATTGCATTGAT+TGG 0.289175 1_3:+67968052 None:intergenic
ATGATATAATATATGATATA+TGG 0.289689 1_3:+67968109 None:intergenic
GAAATTGTTGAAAATCAATT+AGG 0.298839 1_3:+67968222 None:intergenic
TTAGAATAGAGTCGCTGTTT+TGG 0.314380 1_3:-67963144 Msa0136170:intron
GCTTGGCATTGGCAGCATTT+AGG 0.323299 1_3:+67967331 None:intergenic
GAGATAGACGGTGCTAATTC+AGG 0.324401 1_3:-67964429 Msa0136170:CDS
GGCATGGAAAAGAATATCTT+TGG 0.336820 1_3:-67964600 Msa0136170:CDS
TCTGTCACTGACAACGAAAC+TGG 0.344971 1_3:+67964570 None:intergenic
CCCAAAAGCGTGAAAGATTC+GGG 0.362290 1_3:-67965408 Msa0136170:CDS
AGAAGAGAAGAGAAGGGGTT+TGG 0.363625 1_3:-67968268 Msa0136170:five_prime_UTR
AGAAGAGAAGGGGTTTGGTT+TGG 0.366431 1_3:-67968263 Msa0136170:five_prime_UTR
GATAGCTTACCACGCAGATT+TGG 0.369392 1_3:+67967710 None:intergenic
AGATATTCTCTTACACCAAC+TGG 0.380780 1_3:+67964381 None:intergenic
GTTGAAGGAAGCTATCTTGC+AGG 0.388901 1_3:-67965367 Msa0136170:intron
GACTAGTACAACGGGGTCCT+GGG 0.389521 1_3:-67963295 Msa0136170:CDS
TGTACGAACTTCTGAGGTTT+CGG 0.391409 1_3:+67963837 None:intergenic
TCCCAAAAGCGTGAAAGATT+CGG 0.399151 1_3:-67965409 Msa0136170:CDS
TCGTCTTCATTCCAAGTTGA+AGG 0.408468 1_3:-67965382 Msa0136170:CDS
ACCACGCAGATTTGGTGCTC+TGG 0.410092 1_3:+67967718 None:intergenic
TATTCAGAATGGGTTATTGA+TGG 0.410636 1_3:-67967370 Msa0136170:CDS
TTGATTAGTAGGGAAAATCT+TGG 0.410939 1_3:-67964510 Msa0136170:CDS
TTCCTTGCAGGTGCAGTCAC+TGG 0.414028 1_3:+67963877 None:intergenic
CAAATACCTTGTGAGAATTA+GGG 0.416437 1_3:+67963236 None:intergenic
GAAGGGGTTTGGTTTGGTAT+TGG 0.418958 1_3:-67968257 Msa0136170:five_prime_UTR
ATCTGGAATATTACAAACCT+TGG 0.419290 1_3:-67962953 Msa0136170:three_prime_UTR
ATCTGCAATTACATTTCAAA+TGG 0.419792 1_3:+67963019 None:intergenic
AGACTAGTACAACGGGGTCC+TGG 0.427228 1_3:-67963296 Msa0136170:CDS
GTATTACAGACTAGTACAAC+GGG 0.430590 1_3:-67963303 Msa0136170:CDS
ACAGATCAGGTTTAAAAGAT+AGG 0.432047 1_3:+67968389 None:intergenic
CAAGATAGCTTCCTTCAACT+TGG 0.441693 1_3:+67965371 None:intergenic
CCCTTCCTTGTGGTAGCACC+AGG 0.456807 1_3:+67964207 None:intergenic
TTATTGATGGGGAGTATGAT+TGG 0.463089 1_3:-67967357 Msa0136170:CDS
GAACCCTGAACCTACAGATC+AGG 0.463850 1_3:+67968376 None:intergenic
CTTCTAGAACGGCTTGGCAT+TGG 0.469839 1_3:+67967320 None:intergenic
TTCTGATCCATTGATTAGTA+GGG 0.483130 1_3:-67964520 Msa0136170:CDS
TGCATTGATTGGATTGATTG+AGG 0.488713 1_3:+67968063 None:intergenic
ATTCAGAATGGGTTATTGAT+GGG 0.488916 1_3:-67967369 Msa0136170:CDS
TGGCATTGGCAGCATTTAGG+CGG 0.489781 1_3:+67967334 None:intergenic
GAAACGTAGAAGAGAAGAGA+AGG 0.492166 1_3:-67968275 Msa0136170:five_prime_UTR
AAACGTAGAAGAGAAGAGAA+GGG 0.493328 1_3:-67968274 Msa0136170:five_prime_UTR
TATCCTGCTGGGGCAGTATG+TGG 0.497132 1_3:+67967086 None:intergenic
GCATTGATTGGATTGATTGA+GGG 0.500356 1_3:+67968064 None:intergenic
ACTTTCAGTTACAGATATTG+TGG 0.501532 1_3:-67964451 Msa0136170:CDS
GAAGGACACACATATCCTGC+TGG 0.504125 1_3:+67967074 None:intergenic
CTAAGAAACTTGTGGTGGAA+TGG 0.507503 1_3:+67963940 None:intergenic
CCACGCAGATTTGGTGCTCT+GGG 0.511130 1_3:+67967719 None:intergenic
ACTGCACCTGCAAGGAAAGA+TGG 0.512141 1_3:-67963871 Msa0136170:CDS
TGGGCAAACATACAAGTAGC+TGG 0.514330 1_3:-67963124 Msa0136170:three_prime_UTR
ATCCATTTGCAGGGCATGCA+TGG 0.515594 1_3:-67963342 Msa0136170:intron
TGTTATCCACACAAATTGCT+TGG 0.517336 1_3:-67967132 Msa0136170:CDS
CAGGTTTAAAAGATAGGTCT+CGG 0.523635 1_3:+67968395 None:intergenic
CTTAATAATGATGAATTGCA+TGG 0.525608 1_3:-67963263 Msa0136170:CDS
TGGAGCTCAATTTGTCTCGA+CGG 0.542971 1_3:-67962933 Msa0136170:three_prime_UTR
GATACGGACATATTCAGAAT+GGG 0.546378 1_3:-67967380 Msa0136170:CDS
TGCCAAGCCGTTCTAGAAGA+GGG 0.546452 1_3:-67967316 Msa0136170:CDS
ATGTATCACGTCACTGACAT+AGG 0.547129 1_3:+67963079 None:intergenic
CCTCCACATACTGCCCCAGC+AGG 0.550193 1_3:-67967089 Msa0136170:CDS
GGAAAGTCAGTGTCAGCAGA+TGG 0.550608 1_3:-67964489 Msa0136170:CDS
GCCAAGCCGTTCTAGAAGAG+GGG 0.553049 1_3:-67967315 Msa0136170:CDS
GTTCACAAAGTTCCTGTCTG+TGG 0.555780 1_3:-67967757 Msa0136170:CDS
AACGTAGAAGAGAAGAGAAG+GGG 0.555864 1_3:-67968273 Msa0136170:five_prime_UTR
AGATACGGACATATTCAGAA+TGG 0.556224 1_3:-67967381 Msa0136170:CDS
GCCTGGTGCTACCACAAGGA+AGG 0.559496 1_3:-67964208 Msa0136170:CDS
ATGTCGTGTACGAACTTCTG+AGG 0.560911 1_3:+67963831 None:intergenic
CACGACATCAAAAGTCATCA+AGG 0.563320 1_3:-67963816 Msa0136170:CDS
TTCAGAATGGGTTATTGATG+GGG 0.569881 1_3:-67967368 Msa0136170:CDS
GGTGCAGTCACTGGAAGAGT+AGG 0.570101 1_3:+67963886 None:intergenic
AAGGACACACATATCCTGCT+GGG 0.572344 1_3:+67967075 None:intergenic
GGCAAAGCACTGGACCAGAA+AGG 0.574957 1_3:+67963907 None:intergenic
CAGATACATTCTCCACAGAC+AGG 0.580352 1_3:+67967745 None:intergenic
AGCTCCACATTTACTACCTG+TGG 0.580849 1_3:-67962875 Msa0136170:three_prime_UTR
AGGGCATGCATGGCAACTAT+GGG 0.588860 1_3:-67963332 Msa0136170:CDS
AATCAATCCAATCAATGCAA+TGG 0.589211 1_3:-67968059 Msa0136170:exon
TGGAAGAGTAGGCAAAGCAC+TGG 0.590680 1_3:+67963897 None:intergenic
TTCCAGTGACTGCACCTGCA+AGG 0.590873 1_3:-67963879 Msa0136170:CDS
ATGAAAAGCTCAAGTCCAGT+TGG 0.593953 1_3:-67964396 Msa0136170:CDS
TGTATTACAGACTAGTACAA+CGG 0.595900 1_3:-67963304 Msa0136170:CDS
GGGCAAAGAGCAAATATGGA+TGG 0.598622 1_3:+67963055 None:intergenic
GTGTCCTTCATGTTCAACTT+CGG 0.599941 1_3:-67967060 Msa0136170:intron
ATGCCAAGCCGTTCTAGAAG+AGG 0.600749 1_3:-67967317 Msa0136170:CDS
ACATCAAAAGTCATCAAGGA+TGG 0.600997 1_3:-67963812 Msa0136170:CDS
CCAAGCCGTTCTAGAAGAGG+GGG 0.607499 1_3:-67967314 Msa0136170:CDS
CCTGGTGCTACCACAAGGAA+GGG 0.608644 1_3:-67964207 Msa0136170:CDS
ACAGATATTGTGGAGATAGA+CGG 0.608658 1_3:-67964441 Msa0136170:CDS
ACAGCCACAGGTAGTAAATG+TGG 0.610994 1_3:+67962871 None:intergenic
CAATCCAATCAATGCAATGG+TGG 0.617279 1_3:-67968056 Msa0136170:exon
TTATTAAGAAGCTCATCCCC+AGG 0.618095 1_3:+67963278 None:intergenic
ACTAGTACAACGGGGTCCTG+GGG 0.620830 1_3:-67963294 Msa0136170:CDS
CTTACCGAAGTTGAACATGA+AGG 0.624033 1_3:+67967056 None:intergenic
GGATCTGAAACTACTCGACT+CGG 0.629457 1_3:-67967289 Msa0136170:CDS
TCGAGACAAATTGAGCTCCA+AGG 0.630507 1_3:+67962936 None:intergenic
CAAATGGACACCAAAACTGA+GGG 0.631698 1_3:+67963035 None:intergenic
ATGGATTGATCCCTTCCTTG+TGG 0.640632 1_3:+67964197 None:intergenic
ATGCTCTAAGAAACTTGTGG+TGG 0.645972 1_3:+67963935 None:intergenic
GGTGGTCTGCAAATGTCGCA+AGG 0.649874 1_3:-67968038 Msa0136170:intron
TTTAGCCTGGTGCTACCACA+AGG 0.651460 1_3:-67964212 Msa0136170:intron
ATTCTGTATGAAACAGCCAC+AGG 0.651639 1_3:+67962859 None:intergenic
GAGAGACCAAGCAATTTGTG+TGG 0.652514 1_3:+67967126 None:intergenic
TCAAATGGACACCAAAACTG+AGG 0.655197 1_3:+67963034 None:intergenic
AAGGAAAGATGGATCAAATG+TGG 0.655485 1_3:-67963860 Msa0136170:CDS
CCTGCTGGGGCAGTATGTGG+AGG 0.661513 1_3:+67967089 None:intergenic
ATAGACGGTGCTAATTCAGG+AGG 0.686513 1_3:-67964426 Msa0136170:CDS
GCAATGCTCTAAGAAACTTG+TGG 0.693603 1_3:+67963932 None:intergenic
GGAGTGCCCTAATTCTCACA+AGG 0.699162 1_3:-67963242 Msa0136170:intron
AGGACACACATATCCTGCTG+GGG 0.714027 1_3:+67967076 None:intergenic
CCCAGAGCACCAAATCTGCG+TGG 0.718188 1_3:-67967719 Msa0136170:intron
CAAGCCGTTCTAGAAGAGGG+GGG 0.740108 1_3:-67967313 Msa0136170:CDS
TATTACAGACTAGTACAACG+GGG 0.851289 1_3:-67963302 Msa0136170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAAAAATTATA+TGG - chr1_3:67962920-67962939 Msa0136170:three_prime_UTR 0.0%
!! TCATGAATTAATTAAAAAAA+CGG - chr1_3:67963029-67963048 Msa0136170:three_prime_UTR 10.0%
!! ATGATATAATATATGATATA+TGG + chr1_3:67963236-67963255 None:intergenic 10.0%
!!! ATTATTTGAAATTGAAATAA+CGG + chr1_3:67963865-67963884 None:intergenic 10.0%
!! AGAAAAAAAATAGTAAAAAA+AGG + chr1_3:67966035-67966054 None:intergenic 10.0%
!! ATAAAACAAGAAAAAAATTT+AGG + chr1_3:67967038-67967057 None:intergenic 10.0%
!!! AACTTTTGAGAAAAAATAAT+TGG + chr1_3:67963207-67963226 None:intergenic 15.0%
!! TATATCATATCAGATTTAAT+TGG - chr1_3:67963248-67963267 Msa0136170:exon 15.0%
!! TAAATTAATTGAGAATAAGA+TGG - chr1_3:67963815-67963834 Msa0136170:CDS 15.0%
!!! TTATAAAGGTTTTATTTGAA+AGG + chr1_3:67964110-67964129 None:intergenic 15.0%
!! TCGTTATTACATATTAAAAA+GGG - chr1_3:67964137-67964156 Msa0136170:CDS 15.0%
!! AAAGAAAGAACAAAAAATAA+GGG + chr1_3:67964522-67964541 None:intergenic 15.0%
!! AAAAGAAAGAACAAAAAATA+AGG + chr1_3:67964523-67964542 None:intergenic 15.0%
!! AAATATACACTATTATAATC+TGG + chr1_3:67966060-67966079 None:intergenic 15.0%
!! TTTGCGAAATAATATAATAT+GGG - chr1_3:67966282-67966301 Msa0136170:intron 15.0%
!!! GTACATTTTTGTAATAAAAA+AGG + chr1_3:67966613-67966632 None:intergenic 15.0%
!! TAATACACATAATGATAAAT+AGG - chr1_3:67967611-67967630 Msa0136170:intron 15.0%
!! ATGAAACTCAAAAAAAAATC+AGG + chr1_3:67963013-67963032 None:intergenic 20.0%
!! GAAATTGTTGAAAATCAATT+AGG + chr1_3:67963123-67963142 None:intergenic 20.0%
!! TTTGAGAAAAAATAATTGGA+AGG + chr1_3:67963203-67963222 None:intergenic 20.0%
!!! TTTGGGTTTTCTATTAATTT+AGG - chr1_3:67963542-67963561 Msa0136170:intron 20.0%
!! TAGTAATTATTGAGTGAAAA+CGG + chr1_3:67963729-67963748 None:intergenic 20.0%
!! ATAATAATCAACTCCAAATA+TGG - chr1_3:67963880-67963899 Msa0136170:CDS 20.0%
!! CTCGTTATTACATATTAAAA+AGG - chr1_3:67964136-67964155 Msa0136170:CDS 20.0%
!! CTAATGCATAAAGAATATAT+AGG - chr1_3:67964611-67964630 Msa0136170:intron 20.0%
!!! ATAATGCTTTTAAAGTAACA+AGG + chr1_3:67965481-67965500 None:intergenic 20.0%
!!! ATAATGTTTTTAAAGCAACA+AGG + chr1_3:67965661-67965680 None:intergenic 20.0%
!! AATTACAATATTAGTTCAAC+AGG + chr1_3:67965792-67965811 None:intergenic 20.0%
!!! AGAGTTTTTTTTTCATGTAT+TGG - chr1_3:67965827-67965846 Msa0136170:intron 20.0%
!!! TTTTTTTTCATGTATTGGTA+TGG - chr1_3:67965832-67965851 Msa0136170:intron 20.0%
!!! TTAATTTTTTATGTCTCATG+TGG - chr1_3:67965884-67965903 Msa0136170:intron 20.0%
!!! TAATTTTTTATGTCTCATGT+GGG - chr1_3:67965885-67965904 Msa0136170:intron 20.0%
!! CTTTGCGAAATAATATAATA+TGG - chr1_3:67966281-67966300 Msa0136170:intron 20.0%
!! GTAACATAAATTCATGTAAT+AGG + chr1_3:67966342-67966361 None:intergenic 20.0%
!! CACCTGATATATTTATTAAA+TGG - chr1_3:67966519-67966538 Msa0136170:intron 20.0%
!!! ATCAATAGAAGAATTTTTCT+GGG + chr1_3:67967558-67967577 None:intergenic 20.0%
!!! AATCAATAGAAGAATTTTTC+TGG + chr1_3:67967559-67967578 None:intergenic 20.0%
!! TATCATTATGTGTATTATAC+AGG + chr1_3:67967608-67967627 None:intergenic 20.0%
! GCTTCAAATATCATATAGAT+CGG - chr1_3:67963373-67963392 Msa0136170:intron 25.0%
!!! TTCATTTCTTCGTTATTTTC+TGG - chr1_3:67963471-67963490 Msa0136170:intron 25.0%
! TACAAAGTTAGAAGAACTTA+TGG - chr1_3:67963511-67963530 Msa0136170:intron 25.0%
! CCTAAAAGAAACAAAAATGA+TGG + chr1_3:67963681-67963700 None:intergenic 25.0%
!!! CCATCATTTTTGTTTCTTTT+AGG - chr1_3:67963678-67963697 Msa0136170:intron 25.0%
!! ATAACGAGTTCAAGTTATAA+AGG + chr1_3:67964124-67964143 None:intergenic 25.0%
! AACTTCAAAATATCGTTCAT+AGG - chr1_3:67964432-67964451 Msa0136170:CDS 25.0%
!!! TTGAGGTTTTAGATAATCAA+GGG + chr1_3:67964661-67964680 None:intergenic 25.0%
!!! ATGATTTGTTGTACTTATGT+AGG - chr1_3:67964710-67964729 Msa0136170:intron 25.0%
! ATGAATAAAATGAAGAGAGT+GGG + chr1_3:67965054-67965073 None:intergenic 25.0%
!! GTAATACACATTCACAATTT+TGG - chr1_3:67965425-67965444 Msa0136170:intron 25.0%
! TATATTTAATGACATGCCTT+AGG - chr1_3:67965498-67965517 Msa0136170:intron 25.0%
! ATATTTAATGACATGCCTTA+GGG - chr1_3:67965499-67965518 Msa0136170:intron 25.0%
! AACCTATATTCCATAATAGT+GGG + chr1_3:67966161-67966180 None:intergenic 25.0%
! AAACCTATATTCCATAATAG+TGG + chr1_3:67966162-67966181 None:intergenic 25.0%
!! AATATAGGTTTGAAACGATT+GGG - chr1_3:67966171-67966190 Msa0136170:intron 25.0%
! CGCCATTTAATAAATATATC+AGG + chr1_3:67966524-67966543 None:intergenic 25.0%
! AAAGAAGAGGAAAAAAATTG+TGG + chr1_3:67966668-67966687 None:intergenic 25.0%
! TAATGAAAAGAGAAAAGAAG+AGG + chr1_3:67966681-67966700 None:intergenic 25.0%
! TTTAGGTCTACTCATTATAA+TGG + chr1_3:67967021-67967040 None:intergenic 25.0%
! TTATTGCAAATAATTTAGCC+TGG - chr1_3:67967117-67967136 Msa0136170:CDS 25.0%
! CGCAAAAAATATACAAAAAG+AGG - chr1_3:67967222-67967241 Msa0136170:intron 25.0%
!! TCAATAGAAGAATTTTTCTG+GGG + chr1_3:67967557-67967576 None:intergenic 25.0%
! CTTAACATTATTCCTTATGA+GGG + chr1_3:67967703-67967722 None:intergenic 25.0%
! CTCATAAGGAATAATGTTAA+GGG - chr1_3:67967702-67967721 Msa0136170:intron 25.0%
! TCTCAGAAAAAAGAAAAGAA+AGG - chr1_3:67967860-67967879 Msa0136170:intron 25.0%
! CTTAATAATGATGAATTGCA+TGG - chr1_3:67968079-67968098 Msa0136170:five_prime_UTR 25.0%
! GTAACAAGCAATATCAAAAA+TGG + chr1_3:67968138-67968157 None:intergenic 25.0%
!!! TTTTTGATATTGCTTGTTAC+TGG - chr1_3:67968138-67968157 Msa0136170:five_prime_UTR 25.0%
! ATCTGCAATTACATTTCAAA+TGG + chr1_3:67968326-67968345 None:intergenic 25.0%
! CTATATGTTGTTCACTTATT+TGG - chr1_3:67968352-67968371 Msa0136170:intron 25.0%
! TGGATTATGTTGTAATTATC+TGG - chr1_3:67968372-67968391 Msa0136170:intron 25.0%
ACAGATCAGGTTTAAAAGAT+AGG + chr1_3:67962956-67962975 None:intergenic 30.0%
! ATCTTTTAAACCTGATCTGT+AGG - chr1_3:67962956-67962975 Msa0136170:three_prime_UTR 30.0%
TCAAACCTGACAAAAAAAAC+CGG - chr1_3:67962987-67963006 Msa0136170:three_prime_UTR 30.0%
AACTCAAAAAAAAATCAGGC+CGG + chr1_3:67963009-67963028 None:intergenic 30.0%
AATCAATCCAATCAATGCAA+TGG - chr1_3:67963283-67963302 Msa0136170:CDS 30.0%
GCAAACAGAGATTGAAATTA+GGG + chr1_3:67963355-67963374 None:intergenic 30.0%
AGCAAACAGAGATTGAAATT+AGG + chr1_3:67963356-67963375 None:intergenic 30.0%
TTGAATAGATCGTCAGAATA+AGG + chr1_3:67963439-67963458 None:intergenic 30.0%
TTAGAAGAACTTATGGAATG+TGG - chr1_3:67963518-67963537 Msa0136170:intron 30.0%
! AACTTATGGAATGTGGTTTT+GGG - chr1_3:67963525-67963544 Msa0136170:intron 30.0%
AAACGGACAATTACAAAACA+CGG + chr1_3:67963712-67963731 None:intergenic 30.0%
!! TATTCAGAATGGGTTATTGA+TGG - chr1_3:67963972-67963991 Msa0136170:intron 30.0%
!! ATTCAGAATGGGTTATTGAT+GGG - chr1_3:67963973-67963992 Msa0136170:intron 30.0%
GAAAGACTGAAAACATTTGA+AGG + chr1_3:67964317-67964336 None:intergenic 30.0%
! TACATTAAAAGCATGTACAC+AGG + chr1_3:67964372-67964391 None:intergenic 30.0%
! CATGCTTTTAATGTAGATAG+TGG - chr1_3:67964377-67964396 Msa0136170:intron 30.0%
! TAGATAGTGGTTATGTTATG+TGG - chr1_3:67964390-67964409 Msa0136170:intron 30.0%
TTGAACAAAGTGTACAAACA+GGG - chr1_3:67964468-67964487 Msa0136170:CDS 30.0%
! GGGAAAATAACATGACATTT+TGG + chr1_3:67964502-67964521 None:intergenic 30.0%
! ATTCTTTATGCATTAGCTTG+AGG + chr1_3:67964607-67964626 None:intergenic 30.0%
!!! TGAGGTTTTAGATAATCAAG+GGG + chr1_3:67964660-67964679 None:intergenic 30.0%
!!! CTTGAGGTTTTAGATAATCA+AGG + chr1_3:67964662-67964681 None:intergenic 30.0%
! TATCTAAAACCTCAAGCTAA+TGG - chr1_3:67964666-67964685 Msa0136170:intron 30.0%
AAATCATGACAATATTCGCT+AGG + chr1_3:67964697-67964716 None:intergenic 30.0%
!! ATGTTTAGAAGGTGGATTTT+TGG - chr1_3:67964933-67964952 Msa0136170:intron 30.0%
TGAATAAAATGAAGAGAGTG+GGG + chr1_3:67965053-67965072 None:intergenic 30.0%
GATGAATAAAATGAAGAGAG+TGG + chr1_3:67965055-67965074 None:intergenic 30.0%
TGTAGATAGAAACTCCTATA+AGG - chr1_3:67965104-67965123 Msa0136170:intron 30.0%
CAGAATAGCAATATCCTTAT+AGG + chr1_3:67965121-67965140 None:intergenic 30.0%
! AAGGATATTGCTATTCTGAT+AGG - chr1_3:67965123-67965142 Msa0136170:intron 30.0%
AACTAACTCCAGTAGTTATA+AGG - chr1_3:67965275-67965294 Msa0136170:intron 30.0%
TCCAGTAGTTATAAGGAATA+GGG - chr1_3:67965282-67965301 Msa0136170:intron 30.0%
TTATAAGGAATAGGGGATAA+TGG - chr1_3:67965290-67965309 Msa0136170:intron 30.0%
AAGAGGGTTACAAGAAAAAA+GGG + chr1_3:67965385-67965404 None:intergenic 30.0%
AAAGAGGGTTACAAGAAAAA+AGG + chr1_3:67965386-67965405 None:intergenic 30.0%
TACTGAATCACTATGAAAGA+GGG + chr1_3:67965401-67965420 None:intergenic 30.0%
TTACTGAATCACTATGAAAG+AGG + chr1_3:67965402-67965421 None:intergenic 30.0%
TATTTAATGACATGCCTTAG+GGG - chr1_3:67965500-67965519 Msa0136170:intron 30.0%
AAGCACAGTATGTATTTGAA+AGG - chr1_3:67965544-67965563 Msa0136170:intron 30.0%
! GGTTACAATATTAGTTTGAC+AGG + chr1_3:67965626-67965645 None:intergenic 30.0%
! CATGTATGTTATCTAAGACA+AGG + chr1_3:67965690-67965709 None:intergenic 30.0%
AGTGTATGATAAGTTTCTTC+TGG + chr1_3:67966098-67966117 None:intergenic 30.0%
AGAAGAAACTTATCATACAC+TGG - chr1_3:67966097-67966116 Msa0136170:intron 30.0%
ATATTTCAGTCCCACTATTA+TGG - chr1_3:67966148-67966167 Msa0136170:intron 30.0%
! GAATATAGGTTTGAAACGAT+TGG - chr1_3:67966170-67966189 Msa0136170:intron 30.0%
TGTTTATGAATGTATCCATC+TGG - chr1_3:67966476-67966495 Msa0136170:intron 30.0%
!!! CACGGATCTATTTTTATAGT+GGG - chr1_3:67966567-67966586 Msa0136170:intron 30.0%
! TTCTGATCCATTGATTAGTA+GGG - chr1_3:67966822-67966841 Msa0136170:intron 30.0%
! AGATTTTCCCTACTAATCAA+TGG + chr1_3:67966832-67966851 None:intergenic 30.0%
TTGATTAGTAGGGAAAATCT+TGG - chr1_3:67966832-67966851 Msa0136170:intron 30.0%
ACTTTCAGTTACAGATATTG+TGG - chr1_3:67966891-67966910 Msa0136170:intron 30.0%
AACAGAGTTACAATTCACAT+TGG + chr1_3:67967062-67967081 None:intergenic 30.0%
!! ATGAGATTTCAGAGTTTTGT+CGG + chr1_3:67967176-67967195 None:intergenic 30.0%
!! ATTTTCCTCTTTGAAAGTGT+AGG - chr1_3:67967378-67967397 Msa0136170:CDS 30.0%
TATGTGTATTATACAGGAAG+AGG + chr1_3:67967602-67967621 None:intergenic 30.0%
CCTTAACATTATTCCTTATG+AGG + chr1_3:67967704-67967723 None:intergenic 30.0%
CCTCATAAGGAATAATGTTA+AGG - chr1_3:67967701-67967720 Msa0136170:intron 30.0%
AATAATGTTAAGGGTGATGT+GGG - chr1_3:67967711-67967730 Msa0136170:intron 30.0%
ATACTACACAGGCAATAAAA+TGG + chr1_3:67967759-67967778 None:intergenic 30.0%
GTATATTCCCATATGGTTAA+AGG - chr1_3:67967775-67967794 Msa0136170:CDS 30.0%
! AGTTGTTATTATCCATTTGC+AGG - chr1_3:67967990-67968009 Msa0136170:intron 30.0%
! GTTGTTATTATCCATTTGCA+GGG - chr1_3:67967991-67968010 Msa0136170:intron 30.0%
TGTATTACAGACTAGTACAA+CGG - chr1_3:67968038-67968057 Msa0136170:intron 30.0%
CAAATACCTTGTGAGAATTA+GGG + chr1_3:67968109-67968128 None:intergenic 30.0%
! ATCTGGAATATTACAAACCT+TGG - chr1_3:67968389-67968408 Msa0136170:intron 30.0%
CAGGTTTAAAAGATAGGTCT+CGG + chr1_3:67962950-67962969 None:intergenic 35.0%
TAAAAAAACGGATCTCAGCT+CGG - chr1_3:67963041-67963060 Msa0136170:three_prime_UTR 35.0%
AAACGTAGAAGAGAAGAGAA+GGG - chr1_3:67963068-67963087 Msa0136170:three_prime_UTR 35.0%
!! GCATTGATTGGATTGATTGA+GGG + chr1_3:67963281-67963300 None:intergenic 35.0%
!! TGCATTGATTGGATTGATTG+AGG + chr1_3:67963282-67963301 None:intergenic 35.0%
! GAACTTATGGAATGTGGTTT+TGG - chr1_3:67963524-67963543 Msa0136170:intron 35.0%
TTTGTCGTCTTTCACAGATA+CGG - chr1_3:67963946-67963965 Msa0136170:intron 35.0%
AGATACGGACATATTCAGAA+TGG - chr1_3:67963961-67963980 Msa0136170:intron 35.0%
GATACGGACATATTCAGAAT+GGG - chr1_3:67963962-67963981 Msa0136170:intron 35.0%
!! TTCAGAATGGGTTATTGATG+GGG - chr1_3:67963974-67963993 Msa0136170:intron 35.0%
! TTATTGATGGGGAGTATGAT+TGG - chr1_3:67963985-67964004 Msa0136170:intron 35.0%
ATGTAATCAATAGCTGCACA+AGG + chr1_3:67964166-67964185 None:intergenic 35.0%
TGTTATCCACACAAATTGCT+TGG - chr1_3:67964210-67964229 Msa0136170:CDS 35.0%
CTGTTTGTACACTTTGTTCA+AGG + chr1_3:67964469-67964488 None:intergenic 35.0%
CTTGAACAAAGTGTACAAAC+AGG - chr1_3:67964467-67964486 Msa0136170:CDS 35.0%
GACACTAGCAATCTTCTTTA+TGG + chr1_3:67964574-67964593 None:intergenic 35.0%
ATGTCGTAAAATCAGAAGTC+TGG - chr1_3:67964770-67964789 Msa0136170:intron 35.0%
CAACACTATACAATAGTTCG+AGG + chr1_3:67964809-67964828 None:intergenic 35.0%
CTGGCAAAAAATTCACAATG+GGG + chr1_3:67964854-67964873 None:intergenic 35.0%
GCTGGCAAAAAATTCACAAT+GGG + chr1_3:67964855-67964874 None:intergenic 35.0%
AGATACATGGCGGTTATAAT+AGG + chr1_3:67964895-67964914 None:intergenic 35.0%
ACAACATCATGTTTAGAAGG+TGG - chr1_3:67964925-67964944 Msa0136170:intron 35.0%
AGTAAACCTTGAGAACTTTC+AGG + chr1_3:67965170-67965189 None:intergenic 35.0%
TTCTCAAGGTTTACTCTCAT+AGG - chr1_3:67965175-67965194 Msa0136170:intron 35.0%
CTCCAGTAGTTATAAGGAAT+AGG - chr1_3:67965281-67965300 Msa0136170:intron 35.0%
CCAGTAGTTATAAGGAATAG+GGG - chr1_3:67965283-67965302 Msa0136170:intron 35.0%
CTGGTTATAATTCTGTGTGT+TGG - chr1_3:67965324-67965343 Msa0136170:intron 35.0%
AGAGGGTTACAAGAAAAAAG+GGG + chr1_3:67965384-67965403 None:intergenic 35.0%
ATTTAATGACATGCCTTAGG+GGG - chr1_3:67965501-67965520 Msa0136170:intron 35.0%
ATTACAATAGCAGTTCGAAC+AGG + chr1_3:67965576-67965595 None:intergenic 35.0%
GTCCCACTATTATGGAATAT+AGG - chr1_3:67966156-67966175 Msa0136170:intron 35.0%
! GGGACTTCAATGATTTTTAC+TGG - chr1_3:67966191-67966210 Msa0136170:intron 35.0%
GTAGAATTCCATAATGTCTC+TGG - chr1_3:67966230-67966249 Msa0136170:intron 35.0%
! CCAAAAATGAGTTTTCCAGA+TGG + chr1_3:67966494-67966513 None:intergenic 35.0%
! CCATCTGGAAAACTCATTTT+TGG - chr1_3:67966491-67966510 Msa0136170:intron 35.0%
TCAATATTTGTGATGCACCA+CGG - chr1_3:67966549-67966568 Msa0136170:intron 35.0%
CCACTATAAAAATAGATCCG+TGG + chr1_3:67966569-67966588 None:intergenic 35.0%
!!! CCACGGATCTATTTTTATAG+TGG - chr1_3:67966566-67966585 Msa0136170:intron 35.0%
! TTTATAGTGGGAGATTGTTC+TGG - chr1_3:67966579-67966598 Msa0136170:intron 35.0%
GGAAAAAAATTGTGGTGCAT+AGG + chr1_3:67966660-67966679 None:intergenic 35.0%
!! TTACCTACTTTTGTGTAGAC+TGG - chr1_3:67966721-67966740 Msa0136170:intron 35.0%
GGCATGGAAAAGAATATCTT+TGG - chr1_3:67966742-67966761 Msa0136170:intron 35.0%
AATGGATCAGAAGAAAAAGC+AGG + chr1_3:67966814-67966833 None:intergenic 35.0%
! CTTCTGATCCATTGATTAGT+AGG - chr1_3:67966821-67966840 Msa0136170:intron 35.0%
ACAGATATTGTGGAGATAGA+CGG - chr1_3:67966901-67966920 Msa0136170:intron 35.0%
AGATATTCTCTTACACCAAC+TGG + chr1_3:67966964-67966983 None:intergenic 35.0%
AAGGAAAGATGGATCAAATG+TGG - chr1_3:67967482-67967501 Msa0136170:intron 35.0%
ACATCAAAAGTCATCAAGGA+TGG - chr1_3:67967530-67967549 Msa0136170:intron 35.0%
GAATAATGTTAAGGGTGATG+TGG - chr1_3:67967710-67967729 Msa0136170:intron 35.0%
ATAATGTTAAGGGTGATGTG+GGG - chr1_3:67967712-67967731 Msa0136170:intron 35.0%
CATATGGGAATATACTACAC+AGG + chr1_3:67967770-67967789 None:intergenic 35.0%
CTGTGTAGTATATTCCCATA+TGG - chr1_3:67967768-67967787 Msa0136170:CDS 35.0%
ACAAGCTCCTTTAACCATAT+GGG + chr1_3:67967785-67967804 None:intergenic 35.0%
TACAAGCTCCTTTAACCATA+TGG + chr1_3:67967786-67967805 None:intergenic 35.0%
ATATGGTTAAAGGAGCTTGT+AGG - chr1_3:67967785-67967804 Msa0136170:intron 35.0%
GAACAGACAGTTCTATATAC+AGG + chr1_3:67967934-67967953 None:intergenic 35.0%
CTAGCAGTAGACTACATAAT+TGG + chr1_3:67967956-67967975 None:intergenic 35.0%
GTATTACAGACTAGTACAAC+GGG - chr1_3:67968039-67968058 Msa0136170:CDS 35.0%
TATTACAGACTAGTACAACG+GGG - chr1_3:67968040-67968059 Msa0136170:CDS 35.0%
CCAAATACCTTGTGAGAATT+AGG + chr1_3:67968110-67968129 None:intergenic 35.0%
! CCTAATTCTCACAAGGTATT+TGG - chr1_3:67968107-67968126 Msa0136170:five_prime_UTR 35.0%
! AATTCTCACAAGGTATTTGG+CGG - chr1_3:67968110-67968129 Msa0136170:five_prime_UTR 35.0%
! TTAGAATAGAGTCGCTGTTT+TGG - chr1_3:67968198-67968217 Msa0136170:five_prime_UTR 35.0%
!! TAGAATAGAGTCGCTGTTTT+GGG - chr1_3:67968199-67968218 Msa0136170:five_prime_UTR 35.0%
TAAACCTGATCTGTAGGTTC+AGG - chr1_3:67962962-67962981 Msa0136170:three_prime_UTR 40.0%
AAACCTGATCTGTAGGTTCA+GGG - chr1_3:67962963-67962982 Msa0136170:three_prime_UTR 40.0%
GAAACGTAGAAGAGAAGAGA+AGG - chr1_3:67963067-67963086 Msa0136170:three_prime_UTR 40.0%
AACGTAGAAGAGAAGAGAAG+GGG - chr1_3:67963069-67963088 Msa0136170:three_prime_UTR 40.0%
CAATCCAATCAATGCAATGG+TGG - chr1_3:67963286-67963305 Msa0136170:CDS 40.0%
GTGTCCTTCATGTTCAACTT+CGG - chr1_3:67964282-67964301 Msa0136170:intron 40.0%
CTTACCGAAGTTGAACATGA+AGG + chr1_3:67964289-67964308 None:intergenic 40.0%
ATATCGTTCATAGGCGTTCT+AGG - chr1_3:67964441-67964460 Msa0136170:CDS 40.0%
! TAGGACAAACCATTAGCTTG+AGG + chr1_3:67964678-67964697 None:intergenic 40.0%
TCGTAAAATCAGAAGTCTGG+TGG - chr1_3:67964773-67964792 Msa0136170:intron 40.0%
ATACAATAGTTCGAGGAACC+TGG + chr1_3:67964802-67964821 None:intergenic 40.0%
GGCTGGCAAAAAATTCACAA+TGG + chr1_3:67964856-67964875 None:intergenic 40.0%
!!! AATTTTTTGCCAGCCTCCAT+AGG - chr1_3:67964861-67964880 Msa0136170:intron 40.0%
AAACATGATGTTGTCGCCTA+TGG + chr1_3:67964919-67964938 None:intergenic 40.0%
GCGACAACATCATGTTTAGA+AGG - chr1_3:67964922-67964941 Msa0136170:intron 40.0%
!!! TTAGAAGGTGGATTTTTGGC+TGG - chr1_3:67964937-67964956 Msa0136170:intron 40.0%
TGTGGATGGCATAGTAGATA+TGG + chr1_3:67964966-67964985 None:intergenic 40.0%
TCAGTGTTATCAACTGTGGA+TGG + chr1_3:67964980-67964999 None:intergenic 40.0%
!! TCCACAGTTGATAACACTGA+CGG - chr1_3:67964980-67964999 Msa0136170:intron 40.0%
! CAGAAAGCTTTTGGACCTTT+CGG + chr1_3:67965201-67965220 None:intergenic 40.0%
AAAGGTCCAAAAGCTTTCTG+AGG - chr1_3:67965201-67965220 Msa0136170:intron 40.0%
! CTAATGCCTCAGAAAGCTTT+TGG + chr1_3:67965210-67965229 None:intergenic 40.0%
!! CAAAAGCTTTCTGAGGCATT+AGG - chr1_3:67965208-67965227 Msa0136170:intron 40.0%
CCCCTATTCCTTATAACTAC+TGG + chr1_3:67965286-67965305 None:intergenic 40.0%
! ACTTTTCATGTAACCCCCTA+AGG + chr1_3:67965517-67965536 None:intergenic 40.0%
! GCAACAAGGCATTAAAAGCA+TGG + chr1_3:67965647-67965666 None:intergenic 40.0%
TGAAACAACTCGTGCAGATA+TGG - chr1_3:67965908-67965927 Msa0136170:intron 40.0%
! TCCCAAAAGCGTGAAAGATT+CGG - chr1_3:67965933-67965952 Msa0136170:intron 40.0%
! TCGTCTTCATTCCAAGTTGA+AGG - chr1_3:67965960-67965979 Msa0136170:intron 40.0%
CAAGATAGCTTCCTTCAACT+TGG + chr1_3:67965974-67965993 None:intergenic 40.0%
TTGCAGGTAACTTATGAGAC+TGG - chr1_3:67965991-67966010 Msa0136170:intron 40.0%
CTTATGAGACTGGCACTATT+TGG - chr1_3:67966001-67966020 Msa0136170:intron 40.0%
GACAAAGACCAGAGACATTA+TGG + chr1_3:67966241-67966260 None:intergenic 40.0%
TGTCAACATTCTTCACTGTC+AGG - chr1_3:67966306-67966325 Msa0136170:intron 40.0%
! ACTAAAAGTGCGATAGGTGT+GGG + chr1_3:67966424-67966443 None:intergenic 40.0%
! AACTAAAAGTGCGATAGGTG+TGG + chr1_3:67966425-67966444 None:intergenic 40.0%
! TGCTGAACTAAAAGTGCGAT+AGG + chr1_3:67966430-67966449 None:intergenic 40.0%
CAGCAACTTAACGATTTCTG+CGG - chr1_3:67966445-67966464 Msa0136170:intron 40.0%
ATGCCAGTCTACACAAAAGT+AGG + chr1_3:67966727-67966746 None:intergenic 40.0%
! TACTTTTGTGTAGACTGGCA+TGG - chr1_3:67966726-67966745 Msa0136170:intron 40.0%
ATGAAAAGCTCAAGTCCAGT+TGG - chr1_3:67966946-67966965 Msa0136170:intron 40.0%
TTGTAACTCTGTTGTGCGTT+TGG - chr1_3:67967069-67967088 Msa0136170:CDS 40.0%
! TCTTTTGTGCAGAACTTGTC+TGG - chr1_3:67967337-67967356 Msa0136170:CDS 40.0%
ATGGACCTACACTTTCAAAG+AGG + chr1_3:67967386-67967405 None:intergenic 40.0%
! CTAAGAAACTTGTGGTGGAA+TGG + chr1_3:67967405-67967424 None:intergenic 40.0%
!! ATGCTCTAAGAAACTTGTGG+TGG + chr1_3:67967410-67967429 None:intergenic 40.0%
!! GCAATGCTCTAAGAAACTTG+TGG + chr1_3:67967413-67967432 None:intergenic 40.0%
!! TTAGAGCATTGCTTCCTTTC+TGG - chr1_3:67967421-67967440 Msa0136170:intron 40.0%
TTTGATCCATCTTTCCTTGC+AGG + chr1_3:67967480-67967499 None:intergenic 40.0%
!! TGTACGAACTTCTGAGGTTT+CGG + chr1_3:67967508-67967527 None:intergenic 40.0%
CACGACATCAAAAGTCATCA+AGG - chr1_3:67967526-67967545 Msa0136170:intron 40.0%
TTATTAAGAAGCTCATCCCC+AGG + chr1_3:67968067-67968086 None:intergenic 40.0%
CAACTGCTTGCTTATCTGTT+TGG - chr1_3:67968166-67968185 Msa0136170:five_prime_UTR 40.0%
ATGTATCACGTCACTGACAT+AGG + chr1_3:67968266-67968285 None:intergenic 40.0%
CAAATGGACACCAAAACTGA+GGG + chr1_3:67968310-67968329 None:intergenic 40.0%
TCAAATGGACACCAAAACTG+AGG + chr1_3:67968311-67968330 None:intergenic 40.0%
ATTCTGTATGAAACAGCCAC+AGG + chr1_3:67968486-67968505 None:intergenic 40.0%
!!! TCAGGCCGGTTTTTTTTGTC+AGG + chr1_3:67962995-67963014 None:intergenic 45.0%
AGAAGAGAAGAGAAGGGGTT+TGG - chr1_3:67963074-67963093 Msa0136170:three_prime_UTR 45.0%
! AGAAGAGAAGGGGTTTGGTT+TGG - chr1_3:67963079-67963098 Msa0136170:three_prime_UTR 45.0%
!! GAAGGGGTTTGGTTTGGTAT+TGG - chr1_3:67963085-67963104 Msa0136170:three_prime_UTR 45.0%
! CAGACCACCATTGCATTGAT+TGG + chr1_3:67963293-67963312 None:intergenic 45.0%
GTTCACAAAGTTCCTGTCTG+TGG - chr1_3:67963585-67963604 Msa0136170:intron 45.0%
CAGATACATTCTCCACAGAC+AGG + chr1_3:67963600-67963619 None:intergenic 45.0%
GATAGCTTACCACGCAGATT+TGG + chr1_3:67963635-67963654 None:intergenic 45.0%
CAGCTCGGTACAACCATATT+TGG + chr1_3:67963896-67963915 None:intergenic 45.0%
AATATGGTTGTACCGAGCTG+TGG - chr1_3:67963896-67963915 Msa0136170:CDS 45.0%
TACCGAGCTGTGGTGTTTAT+GGG - chr1_3:67963906-67963925 Msa0136170:CDS 45.0%
AACCCATAAACACCACAGCT+CGG + chr1_3:67963911-67963930 None:intergenic 45.0%
! GGATCTGAAACTACTCGACT+CGG - chr1_3:67964053-67964072 Msa0136170:intron 45.0%
GAGAGACCAAGCAATTTGTG+TGG + chr1_3:67964219-67964238 None:intergenic 45.0%
AAGGACACACATATCCTGCT+GGG + chr1_3:67964270-67964289 None:intergenic 45.0%
! ATAATAGGTGTTGCGGCCTA+TGG + chr1_3:67964880-67964899 None:intergenic 45.0%
! GGCGGTTATAATAGGTGTTG+CGG + chr1_3:67964887-67964906 None:intergenic 45.0%
AACCGCCATGTATCTACCAT+AGG - chr1_3:67964900-67964919 Msa0136170:intron 45.0%
TGTCGCCTATGGTAGATACA+TGG + chr1_3:67964908-67964927 None:intergenic 45.0%
GGATGGCATAGTAGATATGG+TGG + chr1_3:67964963-67964982 None:intergenic 45.0%
ACCGTCAGTGTTATCAACTG+TGG + chr1_3:67964984-67965003 None:intergenic 45.0%
TAACACTGACGGTACAAGCT+AGG - chr1_3:67964991-67965010 Msa0136170:intron 45.0%
GTTTACTCTCATAGGCCGAA+AGG - chr1_3:67965183-67965202 Msa0136170:intron 45.0%
!! AAGCTTTCTGAGGCATTAGG+AGG - chr1_3:67965211-67965230 Msa0136170:intron 45.0%
!! AGCTTTCTGAGGCATTAGGA+GGG - chr1_3:67965212-67965231 Msa0136170:intron 45.0%
GCGGGAGTCTGAATTAGTAA+TGG - chr1_3:67965243-67965262 Msa0136170:intron 45.0%
!! AGGAATAGGGGATAATGGAG+AGG - chr1_3:67965295-67965314 Msa0136170:intron 45.0%
!! GGAATAGGGGATAATGGAGA+GGG - chr1_3:67965296-67965315 Msa0136170:intron 45.0%
!! GAATAGGGGATAATGGAGAG+GGG - chr1_3:67965297-67965316 Msa0136170:intron 45.0%
TTGGAGACGAGAGTTAACTC+TGG - chr1_3:67965343-67965362 Msa0136170:intron 45.0%
!! AGAGTTAACTCTGGCTTGGA+AGG - chr1_3:67965352-67965371 Msa0136170:intron 45.0%
!! GAGTTAACTCTGGCTTGGAA+GGG - chr1_3:67965353-67965372 Msa0136170:intron 45.0%
! GAATCTTTCACGCTTTTGGG+AGG + chr1_3:67965934-67965953 None:intergenic 45.0%
! CCCGAATCTTTCACGCTTTT+GGG + chr1_3:67965937-67965956 None:intergenic 45.0%
! CCCAAAAGCGTGAAAGATTC+GGG - chr1_3:67965934-67965953 Msa0136170:intron 45.0%
! TCCCGAATCTTTCACGCTTT+TGG + chr1_3:67965938-67965957 None:intergenic 45.0%
GTTGAAGGAAGCTATCTTGC+AGG - chr1_3:67965975-67965994 Msa0136170:intron 45.0%
ATGAGACTGGCACTATTTGG+CGG - chr1_3:67966004-67966023 Msa0136170:intron 45.0%
TCTGTCACTGACAACGAAAC+TGG + chr1_3:67966775-67966794 None:intergenic 45.0%
TCAGAAGAAAAAGCAGGAGG+AGG + chr1_3:67966808-67966827 None:intergenic 45.0%
GGATCAGAAGAAAAAGCAGG+AGG + chr1_3:67966811-67966830 None:intergenic 45.0%
! GAGATAGACGGTGCTAATTC+AGG - chr1_3:67966913-67966932 Msa0136170:intron 45.0%
! ATAGACGGTGCTAATTCAGG+AGG - chr1_3:67966916-67966935 Msa0136170:intron 45.0%
! ATGGATTGATCCCTTCCTTG+TGG + chr1_3:67967148-67967167 None:intergenic 45.0%
!! CAGAGTTTTGTCGGTCAACA+TGG + chr1_3:67967167-67967186 None:intergenic 45.0%
ATGTCATCTGCTGTTCATGC+TGG - chr1_3:67967304-67967323 Msa0136170:CDS 45.0%
!! CTGTTCATGCTGGCTTTCTT+TGG - chr1_3:67967314-67967333 Msa0136170:CDS 45.0%
ATGTCGTGTACGAACTTCTG+AGG + chr1_3:67967514-67967533 None:intergenic 45.0%
! GTGACTTGTAAGCCCTCATA+AGG - chr1_3:67967688-67967707 Msa0136170:intron 45.0%
TGGGCAAACATACAAGTAGC+TGG - chr1_3:67968218-67968237 Msa0136170:five_prime_UTR 45.0%
GGGCAAAGAGCAAATATGGA+TGG + chr1_3:67968290-67968309 None:intergenic 45.0%
CTGAGGGCAAAGAGCAAATA+TGG + chr1_3:67968294-67968313 None:intergenic 45.0%
! TTGCTCTTTGCCCTCAGTTT+TGG - chr1_3:67968297-67968316 Msa0136170:five_prime_UTR 45.0%
TCGAGACAAATTGAGCTCCA+AGG + chr1_3:67968409-67968428 None:intergenic 45.0%
TGGAGCTCAATTTGTCTCGA+CGG - chr1_3:67968409-67968428 Msa0136170:five_prime_UTR 45.0%
AGCTCCACATTTACTACCTG+TGG - chr1_3:67968467-67968486 Msa0136170:five_prime_UTR 45.0%
ACAGCCACAGGTAGTAAATG+TGG + chr1_3:67968474-67968493 None:intergenic 45.0%
GAACCCTGAACCTACAGATC+AGG + chr1_3:67962969-67962988 None:intergenic 50.0%
GTACCGAGCTGTGGTGTTTA+TGG - chr1_3:67963905-67963924 Msa0136170:CDS 50.0%
!! TGGCATTGGCAGCATTTAGG+CGG + chr1_3:67964011-67964030 None:intergenic 50.0%
!! GCTTGGCATTGGCAGCATTT+AGG + chr1_3:67964014-67964033 None:intergenic 50.0%
!! CTTCTAGAACGGCTTGGCAT+TGG + chr1_3:67964025-67964044 None:intergenic 50.0%
!! ATGCCAAGCCGTTCTAGAAG+AGG - chr1_3:67964025-67964044 Msa0136170:intron 50.0%
!! TGCCAAGCCGTTCTAGAAGA+GGG - chr1_3:67964026-67964045 Msa0136170:intron 50.0%
AGGACACACATATCCTGCTG+GGG + chr1_3:67964269-67964288 None:intergenic 50.0%
GAAGGACACACATATCCTGC+TGG + chr1_3:67964271-67964290 None:intergenic 50.0%
! GTAACACCGTGGCGGAAATT+GGG + chr1_3:67964832-67964851 None:intergenic 50.0%
TTCACAATGGGGTAACACCG+TGG + chr1_3:67964843-67964862 None:intergenic 50.0%
CGCCTATGGTAGATACATGG+CGG + chr1_3:67964905-67964924 None:intergenic 50.0%
GAGAGTGGGGTTGAGAACTT+GGG + chr1_3:67965040-67965059 None:intergenic 50.0%
AGAGAGTGGGGTTGAGAACT+TGG + chr1_3:67965041-67965060 None:intergenic 50.0%
ATAGGATCCCACACAACCCA+GGG - chr1_3:67965141-67965160 Msa0136170:intron 50.0%
AGGCATTAGGAGGGAGTTGT+AGG - chr1_3:67965221-67965240 Msa0136170:intron 50.0%
CATTAGGAGGGAGTTGTAGG+CGG - chr1_3:67965224-67965243 Msa0136170:intron 50.0%
ATTAGGAGGGAGTTGTAGGC+GGG - chr1_3:67965225-67965244 Msa0136170:intron 50.0%
!! GATAATGGAGAGGGGTATGC+TGG - chr1_3:67965305-67965324 Msa0136170:intron 50.0%
GACGAGAGTTAACTCTGGCT+TGG - chr1_3:67965348-67965367 Msa0136170:intron 50.0%
TGAGACTGGCACTATTTGGC+GGG - chr1_3:67966005-67966024 Msa0136170:intron 50.0%
GGAAAGTCAGTGTCAGCAGA+TGG - chr1_3:67966853-67966872 Msa0136170:intron 50.0%
!! TTTAGCCTGGTGCTACCACA+AGG - chr1_3:67967130-67967149 Msa0136170:CDS 50.0%
TGGAAGAGTAGGCAAAGCAC+TGG + chr1_3:67967448-67967467 None:intergenic 50.0%
ACTGCACCTGCAAGGAAAGA+TGG - chr1_3:67967471-67967490 Msa0136170:intron 50.0%
ATCCATTTGCAGGGCATGCA+TGG - chr1_3:67968000-67968019 Msa0136170:intron 50.0%
AGGGCATGCATGGCAACTAT+GGG - chr1_3:67968010-67968029 Msa0136170:intron 50.0%
! GGAGTGCCCTAATTCTCACA+AGG - chr1_3:67968100-67968119 Msa0136170:five_prime_UTR 50.0%
GGTGGTCTGCAAATGTCGCA+AGG - chr1_3:67963304-67963323 Msa0136170:CDS 55.0%
!! CCACGCAGATTTGGTGCTCT+GGG + chr1_3:67963626-67963645 None:intergenic 55.0%
!! ACCACGCAGATTTGGTGCTC+TGG + chr1_3:67963627-67963646 None:intergenic 55.0%
!! GCCAAGCCGTTCTAGAAGAG+GGG - chr1_3:67964027-67964046 Msa0136170:intron 55.0%
!! CCAAGCCGTTCTAGAAGAGG+GGG - chr1_3:67964028-67964047 Msa0136170:intron 55.0%
!! CAAGCCGTTCTAGAAGAGGG+GGG - chr1_3:67964029-67964048 Msa0136170:intron 55.0%
! TCCACCCCCCTCTTCTAGAA+CGG + chr1_3:67964036-67964055 None:intergenic 55.0%
TATCCTGCTGGGGCAGTATG+TGG + chr1_3:67964259-67964278 None:intergenic 55.0%
! TCAGAAGTCTGGTGGTGTCC+AGG - chr1_3:67964781-67964800 Msa0136170:intron 55.0%
GTGTTGCCCAATTTCCGCCA+CGG - chr1_3:67964823-67964842 Msa0136170:intron 55.0%
! GGTAACACCGTGGCGGAAAT+TGG + chr1_3:67964833-67964852 None:intergenic 55.0%
ACAATGGGGTAACACCGTGG+CGG + chr1_3:67964840-67964859 None:intergenic 55.0%
! ATAGGTGTTGCGGCCTATGG+AGG + chr1_3:67964877-67964896 None:intergenic 55.0%
GATAGGATCCCACACAACCC+AGG - chr1_3:67965140-67965159 Msa0136170:intron 55.0%
TAGGATCCCACACAACCCAG+GGG - chr1_3:67965142-67965161 Msa0136170:intron 55.0%
GAGAACTTTCAGGCACCCCT+GGG + chr1_3:67965160-67965179 None:intergenic 55.0%
TGAGAACTTTCAGGCACCCC+TGG + chr1_3:67965161-67965180 None:intergenic 55.0%
! GGGGTGCCTGAAAGTTCTCA+AGG - chr1_3:67965161-67965180 Msa0136170:intron 55.0%
GAGACTGGCACTATTTGGCG+GGG - chr1_3:67966006-67966025 Msa0136170:intron 55.0%
GTGCGATAGGTGTGGGAAAG+AGG + chr1_3:67966417-67966436 None:intergenic 55.0%
!! CCTGGTGCTACCACAAGGAA+GGG - chr1_3:67967135-67967154 Msa0136170:CDS 55.0%
!! GGCAAAGCACTGGACCAGAA+AGG + chr1_3:67967438-67967457 None:intergenic 55.0%
GGTGCAGTCACTGGAAGAGT+AGG + chr1_3:67967459-67967478 None:intergenic 55.0%
TTCCAGTGACTGCACCTGCA+AGG - chr1_3:67967463-67967482 Msa0136170:intron 55.0%
TTCCTTGCAGGTGCAGTCAC+TGG + chr1_3:67967468-67967487 None:intergenic 55.0%
AGGGTGATGTGGGGAACTAC+TGG - chr1_3:67967721-67967740 Msa0136170:CDS 55.0%
TGCCATGCATGCCCTGCAAA+TGG + chr1_3:67968005-67968024 None:intergenic 55.0%
CAGGGCATGCATGGCAACTA+TGG - chr1_3:67968009-67968028 Msa0136170:intron 55.0%
AGACTAGTACAACGGGGTCC+TGG - chr1_3:67968046-67968065 Msa0136170:exon 55.0%
GACTAGTACAACGGGGTCCT+GGG - chr1_3:67968047-67968066 Msa0136170:exon 55.0%
ACTAGTACAACGGGGTCCTG+GGG - chr1_3:67968048-67968067 Msa0136170:exon 55.0%
! CCCAGAGCACCAAATCTGCG+TGG - chr1_3:67963623-67963642 Msa0136170:intron 60.0%
!! CCCCCTCTTCTAGAACGGCT+TGG + chr1_3:67964031-67964050 None:intergenic 60.0%
!! GCCTGGTGCTACCACAAGGA+AGG - chr1_3:67967134-67967153 Msa0136170:CDS 60.0%
CCCTTCCTTGTGGTAGCACC+AGG + chr1_3:67967138-67967157 None:intergenic 60.0%
!! GCCGTTCTAGAAGAGGGGGG+TGG - chr1_3:67964032-67964051 Msa0136170:intron 65.0%
CCTGCTGGGGCAGTATGTGG+AGG + chr1_3:67964256-67964275 None:intergenic 65.0%
CCTCCACATACTGCCCCAGC+AGG - chr1_3:67964253-67964272 Msa0136170:intron 65.0%
GTGTTGCGGCCTATGGAGGC+TGG + chr1_3:67964873-67964892 None:intergenic 65.0%
CAGGCACCCCTGGGTTGTGT+GGG + chr1_3:67965151-67965170 None:intergenic 65.0%
TCAGGCACCCCTGGGTTGTG+TGG + chr1_3:67965152-67965171 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67962833 67968531 67962833 ID=Msa0136170;Name=Msa0136170
chr1_3 mRNA 67962833 67968531 67962833 ID=Msa0136170-mRNA-1;Parent=Msa0136170;Name=Msa0136170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=443|1|1|1|0.7|0.54|11|335|339
chr1_3 exon 67962833 67963157 67962833 ID=Msa0136170-mRNA-1:exon:23433;Parent=Msa0136170-mRNA-1
chr1_3 exon 67963243 67963352 67963243 ID=Msa0136170-mRNA-1:exon:23432;Parent=Msa0136170-mRNA-1
chr1_3 exon 67963778 67963964 67963778 ID=Msa0136170-mRNA-1:exon:23431;Parent=Msa0136170-mRNA-1
chr1_3 exon 67964121 67964229 67964121 ID=Msa0136170-mRNA-1:exon:23430;Parent=Msa0136170-mRNA-1
chr1_3 exon 67964395 67964625 67964395 ID=Msa0136170-mRNA-1:exon:23429;Parent=Msa0136170-mRNA-1
chr1_3 exon 67965368 67965439 67965368 ID=Msa0136170-mRNA-1:exon:23428;Parent=Msa0136170-mRNA-1
chr1_3 exon 67967061 67967155 67967061 ID=Msa0136170-mRNA-1:exon:23427;Parent=Msa0136170-mRNA-1
chr1_3 exon 67967281 67967401 67967281 ID=Msa0136170-mRNA-1:exon:23426;Parent=Msa0136170-mRNA-1
chr1_3 exon 67967720 67967800 67967720 ID=Msa0136170-mRNA-1:exon:23425;Parent=Msa0136170-mRNA-1
chr1_3 exon 67968039 67968364 67968039 ID=Msa0136170-mRNA-1:exon:23424;Parent=Msa0136170-mRNA-1
chr1_3 exon 67968391 67968531 67968391 ID=Msa0136170-mRNA-1:exon:23423;Parent=Msa0136170-mRNA-1
chr1_3 five_prime_UTR 67968391 67968531 67968391 ID=Msa0136170-mRNA-1:five_prime_utr;Parent=Msa0136170-mRNA-1
chr1_3 five_prime_UTR 67968063 67968364 67968063 ID=Msa0136170-mRNA-1:five_prime_utr;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67968039 67968062 67968039 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67967720 67967800 67967720 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67967281 67967401 67967281 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67967061 67967155 67967061 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67965368 67965439 67965368 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67964395 67964625 67964395 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67964121 67964229 67964121 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67963778 67963964 67963778 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 CDS 67963253 67963352 67963253 ID=Msa0136170-mRNA-1:cds;Parent=Msa0136170-mRNA-1
chr1_3 three_prime_UTR 67963243 67963252 67963243 ID=Msa0136170-mRNA-1:three_prime_utr;Parent=Msa0136170-mRNA-1
chr1_3 three_prime_UTR 67962833 67963157 67962833 ID=Msa0136170-mRNA-1:three_prime_utr;Parent=Msa0136170-mRNA-1
Gene Sequence

>Msa0136170

ATGGTGGTCTGCAAATGTCGCAAGGCTACTAAGCTATATTGCTTCGTTCACAAAGTTCCTGTCTGTGGAGAATGTATCTGCTTCCCAGAGCACCAAATCTGCGTGATACGGACATATTCAGAATGGGTTATTGATGGGGAGTATGATTGGCCGCCTAAATGCTGCCAATGCCAAGCCGTTCTAGAAGAGGGGGGTGGATCTGAAACTACTCGACTCGGTTGCTTGCATGTTATCCACACAAATTGCTTGGTCTCTCATATCAAGAGCTTTCCTCCACATACTGCCCCAGCAGGATATGTGTGTCCTTCATGTTCAACTTCGATATGGCCTCCCAAAAGCGTGAAAGATTCGGGATCTCGTCTTCATTCCAAGTTGAAGGAAGCTATCTTGCAGACTGGCATGGAAAAGAATATCTTTGGAAATCATCCAGTTTCGTTGTCAGTGACAGAATCACGTAGTCCTCCTCCTGCTTTTTCTTCTGATCCATTGATTAGTAGGGAAAATCTTGGAAAGTCAGTGTCAGCAGATGGATCAGAACTTTCTAAACTTTCAGTTACAGATATTGTGGAGATAGACGGTGCTAATTCAGGAGGAAATTTCATGAAAAGCTCAAGTCCAGTTGGTCCTGGTGCTACCACAAGGAAGGGATCAATCCATGTTGACCGACAAAACTCTGAAATCTCATACTATGCTGATGATGAAGATGCAAATCGCAAAAAATATACAAAAAGAGGTCCATTCCACCACAAGTTTCTTAGAGCATTGCTTCCTTTCTGGTCCAGTGCTTTGCCTACTCTTCCAGTGACTGCACCTGCAAGGAAAGATGGATCAAATGTGGCCGAAACCTCAGAAGTTCGTACACGACATCAAAAGTCATCAAGGATGGACCCCAGAAAAATTCTTCTATTGATTGCAATCATGGCATGCATGGCAACTATGGGTATATTGTATTACAGACTAGTACAACGGGGTCCTGGGGATGAGCTTCTTAATAATGATGAATTGCATGGAGTGCCCTAA
Protein sequence

>Msa0136170

MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVIDGEYDWPPKCCQCQAVLEEGGGSETTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYVCPSCSTSIWPPKSVKDSGSRLHSKLKEAILQTGMEKNIFGNHPVSLSVTESRSPPPAFSSDPLISRENLGKSVSADGSELSKLSVTDIVEIDGANSGGNFMKSSSPVGPGATTRKGSIHVDRQNSEISYYADDEDANRKKYTKRGPFHHKFLRALLPFWSSALPTLPVTAPARKDGSNVAETSEVRTRHQKSSRMDPRKILLLIAIMACMATMGILYYRLVQRGPGDELLNNDELHGVP*