AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386880 MtrunA17_Chr4g0035391 79.745 627 112 5 1 623 1 616 0.0 1026
Msa0386880 MtrunA17_Chr3g0144911 98.807 419 5 0 1 419 1 419 0.0 867
Msa0386880 MtrunA17_Chr1g0155521 67.516 628 190 9 1 622 1 620 0.0 855
Msa0386880 MtrunA17_Chr3g0141821 58.814 607 208 7 18 623 7 572 0.0 666
Msa0386880 MtrunA17_Chr3g0144891 54.090 599 225 13 28 623 18 569 0.0 557
Msa0386880 MtrunA17_Chr8g0372651 51.820 577 221 8 39 609 17 542 0.0 555
Msa0386880 MtrunA17_Chr5g0404711 61.153 399 122 4 41 439 10 375 2.74e-176 509
Msa0386880 MtrunA17_Chr5g0404711 40.196 102 57 2 522 623 378 475 4.71e-14 75.1
Msa0386880 MtrunA17_Chr3g0080051 43.770 626 325 13 13 622 4 618 4.47e-163 480
Msa0386880 MtrunA17_Chr7g0236461 43.269 624 300 13 14 623 4 587 2.03e-162 478
Msa0386880 MtrunA17_Chr4g0035361 53.586 502 188 11 110 609 1 459 5.82e-161 469
Msa0386880 MtrunA17_Chr4g0035381 59.432 387 83 5 17 395 16 336 1.44e-144 424
Msa0386880 MtrunA17_Chr8g0369291 41.157 605 326 11 31 622 15 602 3.52e-138 416
Msa0386880 MtrunA17_Chr3g0144901 97.449 196 5 0 428 623 1 196 1.93e-136 396
Msa0386880 MtrunA17_Chr5g0399151 51.948 308 143 2 44 351 54 356 4.62e-110 338
Msa0386880 MtrunA17_Chr3g0102691 31.301 246 142 7 88 317 1 235 9.69e-20 91.3
Msa0386880 MtrunA17_Chr4g0076441 25.982 331 204 10 85 393 1 312 4.06e-19 89.0
Msa0386880 MtrunA17_Chr3g0131581 31.163 215 129 6 107 320 66 262 3.39e-18 85.1
Msa0386880 MtrunA17_Chr2g0290661 28.870 239 146 7 93 317 13 241 5.35e-18 85.5
Msa0386880 MtrunA17_Chr8g0385681 31.944 216 128 7 106 320 48 245 1.92e-16 79.7
Msa0386880 MtrunA17_Chr4g0014901 30.180 222 129 9 110 320 271 477 2.27e-16 82.8
Msa0386880 MtrunA17_Chr8g0385291 29.437 231 138 7 110 330 181 396 3.41e-16 81.6
Msa0386880 MtrunA17_Chr4g0004981 27.313 227 140 8 110 326 125 336 2.54e-15 79.0
Msa0386880 MtrunA17_Chr1g0155071 30.986 213 121 9 113 320 48 239 1.82e-14 74.3
Msa0386880 MtrunA17_Chr1g0161441 30.047 213 130 8 111 320 32 228 3.20e-13 70.1
Msa0386880 MtrunA17_Chr3g0131071 28.829 222 133 8 110 320 249 456 1.55e-12 70.5
Msa0386880 MtrunA17_Chr4g0014911 26.549 226 143 6 110 324 139 352 3.44e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386880 AT2G21520.1 74.720 625 145 5 1 617 1 620 0.0 951
Msa0386880 AT2G21520.2 74.086 629 146 6 1 617 1 624 0.0 942
Msa0386880 AT2G21520.3 74.086 629 146 6 1 617 1 624 0.0 942
Msa0386880 AT4G39170.1 73.576 632 140 8 1 623 1 614 0.0 934
Msa0386880 AT4G39170.2 73.418 632 139 9 1 623 1 612 0.0 928
Msa0386880 AT1G19650.1 58.889 630 230 10 1 623 1 608 0.0 701
Msa0386880 AT1G75370.1 58.202 634 232 12 1 623 1 612 0.0 679
Msa0386880 AT1G75370.2 57.771 637 233 12 1 623 1 615 0.0 676
Msa0386880 AT1G19650.2 58.935 526 193 7 105 623 27 536 0.0 597
Msa0386880 AT2G21540.6 51.269 591 220 10 23 609 11 537 0.0 584
Msa0386880 AT2G21540.2 51.269 591 220 10 23 609 11 537 0.0 584
Msa0386880 AT2G21540.1 51.269 591 220 10 23 609 11 537 0.0 584
Msa0386880 AT2G21540.4 51.269 591 220 10 23 609 11 537 0.0 584
Msa0386880 AT2G21540.3 50.931 591 216 10 23 609 11 531 0.0 582
Msa0386880 AT2G21540.5 50.931 591 216 10 23 609 11 531 0.0 582
Msa0386880 AT4G36490.1 53.380 577 214 11 35 609 8 531 0.0 573
Msa0386880 AT4G34580.2 50.251 597 229 10 24 609 3 542 0.0 563
Msa0386880 AT4G34580.1 50.251 597 229 10 24 609 3 542 0.0 563
Msa0386880 AT4G39180.1 50.085 591 232 13 23 609 11 542 0.0 555
Msa0386880 AT1G19650.3 65.783 415 134 5 1 415 1 407 0.0 547
Msa0386880 AT4G39180.3 73.214 336 86 3 23 357 11 343 0.0 535
Msa0386880 AT4G39180.2 73.214 336 86 3 23 357 11 343 0.0 535
Msa0386880 AT2G16380.2 46.891 595 253 10 26 615 5 541 1.96e-179 520
Msa0386880 AT2G16380.1 46.891 595 253 10 26 615 5 541 1.96e-179 520
Msa0386880 AT2G18180.2 74.684 316 72 4 37 351 14 322 1.21e-173 505
Msa0386880 AT2G18180.2 55.714 70 31 0 541 610 466 535 2.98e-16 82.8
Msa0386880 AT2G18180.1 74.684 316 72 4 37 351 14 322 1.26e-173 505
Msa0386880 AT2G18180.1 55.714 70 31 0 541 610 466 535 3.03e-16 82.8
Msa0386880 AT3G24840.1 46.000 600 266 13 29 623 22 568 1.28e-167 491
Msa0386880 AT3G24840.6 46.000 600 266 13 29 623 22 568 1.28e-167 491
Msa0386880 AT3G24840.4 46.000 600 266 13 29 623 22 568 1.28e-167 491
Msa0386880 AT3G24840.2 46.000 600 266 13 29 623 22 568 1.28e-167 491
Msa0386880 AT3G24840.7 46.000 600 267 13 29 623 22 569 1.87e-167 490
Msa0386880 AT3G24840.3 46.000 600 267 13 29 623 22 569 1.87e-167 490
Msa0386880 AT3G24840.5 46.000 600 267 13 29 623 22 569 1.87e-167 490
Msa0386880 AT1G55690.2 42.992 635 322 10 14 622 5 625 1.38e-158 469
Msa0386880 AT1G55690.4 42.992 635 322 10 14 622 5 625 1.38e-158 469
Msa0386880 AT1G55690.1 42.992 635 322 10 14 622 5 625 1.38e-158 469
Msa0386880 AT1G55690.5 42.992 635 322 10 14 622 5 625 1.38e-158 469
Msa0386880 AT1G55690.3 43.062 627 319 9 14 616 5 617 3.02e-157 466
Msa0386880 AT2G18180.3 80.083 241 48 0 111 351 11 251 2.10e-150 443
Msa0386880 AT2G18180.3 55.714 70 31 0 541 610 395 464 1.74e-16 83.2
Msa0386880 AT2G18180.4 80.417 240 47 0 112 351 12 251 2.17e-150 443
Msa0386880 AT2G18180.4 55.714 70 31 0 541 610 395 464 1.75e-16 83.2
Msa0386880 AT2G16380.3 46.138 492 205 8 128 615 1 436 1.16e-142 422
Msa0386880 AT2G18180.5 81.250 224 42 0 128 351 1 224 1.39e-141 419
Msa0386880 AT2G18180.5 55.714 70 31 0 541 610 368 437 1.42e-16 83.2
Msa0386880 AT5G56160.2 55.780 346 149 3 16 359 1 344 3.69e-135 404
Msa0386880 AT5G56160.1 55.780 346 149 3 16 359 1 344 2.18e-134 405
Msa0386880 AT5G56160.3 55.780 346 149 3 16 359 1 344 2.18e-134 405
Msa0386880 AT5G47510.2 50.775 258 127 0 86 343 27 284 5.49e-100 308
Msa0386880 AT5G47510.1 50.775 258 127 0 86 343 26 283 1.45e-99 308
Msa0386880 AT5G47510.4 50.775 258 127 0 86 343 27 284 1.53e-99 308
Msa0386880 AT5G47510.3 52.655 226 107 0 118 343 2 227 2.44e-91 285
Msa0386880 AT5G47730.4 27.984 243 156 6 86 317 7 241 1.63e-19 90.9
Msa0386880 AT5G47730.1 27.984 243 156 6 86 317 7 241 1.63e-19 90.9
Msa0386880 AT1G55840.1 29.098 244 145 6 97 328 19 246 4.39e-18 86.3
Msa0386880 AT1G55840.2 30.047 213 133 4 111 317 12 214 2.46e-17 83.6
Msa0386880 AT1G01630.1 31.604 212 126 7 110 320 52 245 9.49e-17 80.9
Msa0386880 AT1G72160.1 24.336 226 148 8 110 324 166 379 1.42e-15 80.1
Msa0386880 AT5G47730.2 27.604 192 131 3 128 317 1 186 4.29e-14 73.6
Msa0386880 AT5G47730.3 27.604 192 131 3 128 317 1 186 4.29e-14 73.6
Msa0386880 AT4G09160.3 24.638 276 179 8 65 324 267 529 3.20e-12 70.1
Msa0386880 AT4G09160.2 26.106 226 144 6 110 324 316 529 3.80e-12 69.7
Msa0386880 AT4G09160.1 26.106 226 144 6 110 324 341 554 4.34e-12 69.7
Msa0386880 AT3G51670.1 25.000 236 149 9 110 337 84 299 1.49e-11 67.4

Find 194 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATCAAATTCAAATT+AGG 0.085421 3_1:+90710418 Msa0386880:five_prime_UTR
CATATGACCTTCAATATTTC+AGG 0.179559 3_1:-90712339 None:intergenic
GAATAGCTCTTCATTGCTTT+TGG 0.251350 3_1:-90712722 None:intergenic
CTCGCAACTTGGCTTCTTCC+TGG 0.254873 3_1:-90714358 None:intergenic
CAGAGGTCTCACACCTTAAA+AGG 0.255250 3_1:+90713150 Msa0386880:CDS
TTCCAATCAAATTCAAATTA+GGG 0.256826 3_1:+90710419 Msa0386880:five_prime_UTR
TTGTAGGAGGGAGTTGAATT+AGG 0.272628 3_1:-90710463 None:intergenic
ACCCGAGCTTTAACTCCTTC+TGG 0.274076 3_1:-90713688 None:intergenic
GGAAACATTACTTAGGTTCT+TGG 0.276758 3_1:+90712101 Msa0386880:intron
TTCCCTGGCGGCCTTGCCCT+TGG 0.278290 3_1:-90710068 None:intergenic
AACCCTAATTTGAATTTGAT+TGG 0.310023 3_1:-90710421 None:intergenic
TGTGGGTCCCACTTTAGTTT+TGG 0.314789 3_1:-90710209 None:intergenic
AGCTAGCAAAGATGCTATTC+TGG 0.321042 3_1:-90714668 None:intergenic
TTTACTACTAAGACCTCGTT+TGG 0.327966 3_1:-90710013 None:intergenic
ACTCTCACCGAACAGGTAAA+AGG 0.336501 3_1:+90712647 Msa0386880:intron
AGAGTTAATTGCTACTAAAA+AGG 0.344700 3_1:+90714032 Msa0386880:CDS
ATGGCCCTTTATCAGATCTA+AGG 0.345070 3_1:-90712308 None:intergenic
CTGACTTTGTAAAATTCTTA+AGG 0.347694 3_1:-90711672 None:intergenic
GATACATCTACTGCCGAATC+AGG 0.348018 3_1:+90712674 Msa0386880:CDS
AAGGAGTTAAAGCTCGGGTT+TGG 0.349644 3_1:+90713692 Msa0386880:CDS
CACCCAAGGGCAAGGCCGCC+AGG 0.350122 3_1:+90710065 Msa0386880:five_prime_UTR
CAGGTACCTCCGAGAAATTC+CGG 0.352903 3_1:-90712261 None:intergenic
GGAAGTTATGCTAACATGTC+TGG 0.353390 3_1:+90713060 Msa0386880:CDS
CACGAACAGGGGTCAGTCTA+AGG 0.356073 3_1:-90712748 None:intergenic
CCAAGTCTTTCAATATAAAC+AGG 0.360352 3_1:-90711384 None:intergenic
CTCTTCCATTCAGCATCAAC+AGG 0.363635 3_1:-90713114 None:intergenic
TATTCATGCGTGTTTACTTC+CGG 0.364504 3_1:+90715272 Msa0386880:three_prime_UTR
GTCTGTGCTTGGCTTGTTGA+AGG 0.374114 3_1:-90713862 None:intergenic
CACTTAATGTAGTGAGTTGC+CGG 0.379771 3_1:+90712242 Msa0386880:intron
TCCCTGGCGGCCTTGCCCTT+GGG 0.385722 3_1:-90710067 None:intergenic
TGGTAATCATCAAAAGCTTC+AGG 0.385856 3_1:-90710872 None:intergenic
ACTGATGCAGGTTACAACTA+TGG 0.387260 3_1:+90711425 Msa0386880:CDS
TGTTGAATGCTGCGGTCTGC+CGG 0.390645 3_1:+90713992 Msa0386880:CDS
TAGTATCATACTATCATCAT+AGG 0.390835 3_1:-90710154 None:intergenic
CTACAATGGAGAAGGGAGTT+TGG 0.395043 3_1:+90711060 Msa0386880:CDS
GGATGCCTTAGATCTGATAA+AGG 0.399200 3_1:+90712303 Msa0386880:CDS
CGGCATTTATGATAAACATT+TGG 0.399702 3_1:-90711928 None:intergenic
TTGCCTCATTCTTCATTCCC+TGG 0.401093 3_1:-90710083 None:intergenic
CCTGTTTATATTGAAAGACT+TGG 0.404931 3_1:+90711384 Msa0386880:CDS
GATGAAAGGAGAACCAGAAT+TGG 0.406535 3_1:+90710668 Msa0386880:CDS
AGACTTACTTCCTCACGAAC+AGG 0.409545 3_1:-90712761 None:intergenic
TTCAGCTTCTGACCCTGATT+CGG 0.410951 3_1:-90712687 None:intergenic
GGTCTGCCGGGTGGATGCTT+TGG 0.413892 3_1:+90714005 Msa0386880:CDS
CCCTCCTTGCTGAAAAGGTT+AGG 0.416929 3_1:+90713901 Msa0386880:CDS
TCTTTCCCTCCTTGCTGAAA+AGG 0.421998 3_1:+90713896 Msa0386880:CDS
CAACTCCCTCCTACAATGTC+TGG 0.427157 3_1:+90710470 Msa0386880:exon
ATGATTACCATATGATGTTA+AGG 0.431353 3_1:+90710885 Msa0386880:CDS
CTGGCGGCCTTGCCCTTGGG+TGG 0.435894 3_1:-90710064 None:intergenic
TTAACTTACGTGGATCTTTG+AGG 0.437733 3_1:-90712008 None:intergenic
TTCTTGCTTATCTTGTCCAC+TGG 0.437905 3_1:+90714777 Msa0386880:three_prime_UTR
TGATATTGCAGGAAGTTTGT+TGG 0.441337 3_1:-90713779 None:intergenic
AGCTCGGGTTTGGGTAGCCC+TGG 0.441503 3_1:+90713702 Msa0386880:CDS
AGTGAGTTGCCGGAATTTCT+CGG 0.443277 3_1:+90712252 Msa0386880:intron
GGTTGAAAAGCTTTAGTTGT+TGG 0.444239 3_1:+90714748 Msa0386880:three_prime_UTR
AAGAGCACCTTAACATCATA+TGG 0.445237 3_1:-90710892 None:intergenic
AGGAGTTAAAGCTCGGGTTT+GGG 0.448011 3_1:+90713693 Msa0386880:CDS
GTAACCTGCATCAGTTTGTT+CGG 0.450895 3_1:-90711417 None:intergenic
TTGAGAATTCAGAAGATGAA+AGG 0.452181 3_1:+90710654 Msa0386880:CDS
CTCCACAACAGTCTAAATCC+AGG 0.459305 3_1:-90711953 None:intergenic
TTTATCATAAATGCCGGCCC+TGG 0.461240 3_1:+90711935 Msa0386880:CDS
GTTAGGTGAGCTTGAAGAGA+AGG 0.464549 3_1:+90713918 Msa0386880:CDS
TCATCATTAGATGATATTGC+AGG 0.467092 3_1:-90713790 None:intergenic
TGTTAGCTCTGTTTCTATTG+AGG 0.470702 3_1:+90710778 Msa0386880:CDS
TCTCAATGGCGAACCACGGC+GGG 0.475604 3_1:+90712446 Msa0386880:CDS
CTAAAGACAGAGAAAGAGAA+AGG 0.476100 3_1:-90710287 None:intergenic
TTTACCCTTTCATCAGCTGC+AGG 0.478475 3_1:+90710243 Msa0386880:five_prime_UTR
TCTAAGAGAATGCTTAAACT+TGG 0.481804 3_1:-90710723 None:intergenic
CACTGCCTGCAGCTGATGAA+AGG 0.483068 3_1:-90710248 None:intergenic
ACACTATACCAAAACTAAAG+TGG 0.485836 3_1:+90710201 Msa0386880:five_prime_UTR
AAGGTCTAGCGAAACGATCA+AGG 0.486798 3_1:-90710496 None:intergenic
ATGTTTGTTGTCTCGAGAGT+TGG 0.489587 3_1:-90713829 None:intergenic
AACAATTCCGCCTTCTCGTA+AGG 0.494601 3_1:-90713973 None:intergenic
TTTGTAGATTTCTGAAAGCA+AGG 0.495319 3_1:+90710995 Msa0386880:intron
ATGCCAACTTACTCGCAACT+TGG 0.496679 3_1:-90714369 None:intergenic
ACCACAATCTTAGATGTTCA+AGG 0.499904 3_1:+90711546 Msa0386880:CDS
ATTTGTCAGGCTAAGATAGC+AGG 0.500992 3_1:+90713033 Msa0386880:intron
AGCAAATAACATCAGGAAGA+AGG 0.501851 3_1:-90713728 None:intergenic
ACATCAGGAAGAAGGCAGCC+AGG 0.503548 3_1:-90713720 None:intergenic
TCAACAGGTTTGTCTACCAT+TGG 0.504730 3_1:-90713099 None:intergenic
TTCTCGTAAGGCATTTCAGA+TGG 0.509154 3_1:-90713961 None:intergenic
AAACGTCCCACCCAAGGGCA+AGG 0.510069 3_1:+90710057 Msa0386880:five_prime_UTR
CTCCAGAAGGAGTTAAAGCT+CGG 0.512546 3_1:+90713686 Msa0386880:CDS
GCAACCGCTGAATGAGTTCA+CGG 0.514132 3_1:-90711696 None:intergenic
GGAAAAGAGCAAATAACATC+AGG 0.514810 3_1:-90713735 None:intergenic
TATTACCCACATGGCCATCA+TGG 0.515918 3_1:+90711342 Msa0386880:CDS
TGGCGGCCTTGCCCTTGGGT+GGG 0.520606 3_1:-90710063 None:intergenic
TAAAGACAGAGAAAGAGAAA+GGG 0.520963 3_1:-90710286 None:intergenic
AATGCGTACAAAAGTAGTAA+AGG 0.522586 3_1:+90715318 Msa0386880:three_prime_UTR
AAAGAAAAGAAAAGAAGGAA+TGG 0.525650 3_1:-90710327 None:intergenic
TACTTGAAGTAATTGATGCC+AGG 0.527444 3_1:+90712144 Msa0386880:CDS
CAGGAAGTTTGTTGGTCATG+CGG 0.529886 3_1:-90713771 None:intergenic
ACAAACCTGTTGATGCTGAA+TGG 0.529895 3_1:+90713109 Msa0386880:CDS
AGTGGTAGGAGAAAGAGTGA+TGG 0.530434 3_1:+90710752 Msa0386880:CDS
TCAAGGGGTCCAGACATTGT+AGG 0.532137 3_1:-90710479 None:intergenic
CTTCCTTGTCTACACCATGA+TGG 0.535434 3_1:-90711356 None:intergenic
AAGTACAACTGTGATCGTGC+TGG 0.536156 3_1:-90714545 None:intergenic
AGCTGATGAAAGGGTAAAAG+AGG 0.537928 3_1:-90710238 None:intergenic
GTTGAATGCTGCGGTCTGCC+GGG 0.538487 3_1:+90713993 Msa0386880:CDS
CACTATACCAAAACTAAAGT+GGG 0.539911 3_1:+90710202 Msa0386880:five_prime_UTR
TGAGGATGTTAGAGATGTTG+AGG 0.541292 3_1:+90710796 Msa0386880:CDS
ACCCAAGGGCAAGGCCGCCA+GGG 0.541314 3_1:+90710066 Msa0386880:five_prime_UTR
ACTGCCTGCAGCTGATGAAA+GGG 0.541563 3_1:-90710247 None:intergenic
CTCTCTACGAAGCGTTAATG+AGG 0.542826 3_1:+90714306 Msa0386880:CDS
TCATGCGGCAAGCAACTTGA+CGG 0.543728 3_1:-90713756 None:intergenic
TCCCTCGTCTGCACAAGAGC+AGG 0.544804 3_1:-90712280 None:intergenic
CTGACATGCTACAATGGAGA+AGG 0.546074 3_1:+90711052 Msa0386880:CDS
GGGTAAAAGAGGAGCAGTTG+TGG 0.546302 3_1:-90710227 None:intergenic
TGGTGCTGACACCATTATGC+AGG 0.547549 3_1:+90711080 Msa0386880:CDS
CTCTTAGAAAGAAGAGTGGT+AGG 0.547857 3_1:+90710738 Msa0386880:CDS
GATGCCTTAGATCTGATAAA+GGG 0.549117 3_1:+90712304 Msa0386880:CDS
ATCTGAAATGCCTTACGAGA+AGG 0.553009 3_1:+90713963 Msa0386880:CDS
CAGGCTAAGATAGCAGGAAA+GGG 0.556007 3_1:+90713039 Msa0386880:intron
TGATCCGAACAAACTGATGC+AGG 0.556119 3_1:+90711413 Msa0386880:CDS
GAAGTTATGCTAACATGTCT+GGG 0.556151 3_1:+90713061 Msa0386880:CDS
GCCCTGGATTTAGACTGTTG+TGG 0.562110 3_1:+90711951 Msa0386880:CDS
TCAGGCTAAGATAGCAGGAA+AGG 0.562842 3_1:+90713038 Msa0386880:intron
TACCTGCTCTTGTGCAGACG+AGG 0.562861 3_1:+90712278 Msa0386880:CDS
AGTATCATACTATCATCATA+GGG 0.563052 3_1:-90710153 None:intergenic
AGGATCAAGAAAAGACTTGA+CGG 0.565906 3_1:-90711978 None:intergenic
CATCAGGAAGAAGGCAGCCA+GGG 0.566468 3_1:-90713719 None:intergenic
CAAATGTTTATCATAAATGC+CGG 0.567049 3_1:+90711929 Msa0386880:CDS
AGTACAACTGTGATCGTGCT+GGG 0.568944 3_1:-90714544 None:intergenic
CAGTGGATAGAGTTACAACA+TGG 0.568948 3_1:-90714588 None:intergenic
GTAAAGGTTCTCAACAGTGA+AGG 0.571005 3_1:+90712480 Msa0386880:CDS
GGTAAAAGAGGAGCAGTTGT+GGG 0.572929 3_1:-90710226 None:intergenic
GCTTGCTTACATAGACCGCC+AGG 0.573707 3_1:+90714340 Msa0386880:CDS
TCCAGAAGGAGTTAAAGCTC+GGG 0.574655 3_1:+90713687 Msa0386880:CDS
GGTTCTCAACAGTGAAGGGA+AGG 0.575465 3_1:+90712485 Msa0386880:CDS
GACTTACTTCCTCACGAACA+GGG 0.576560 3_1:-90712760 None:intergenic
TAAAGGTTCTCAACAGTGAA+GGG 0.579543 3_1:+90712481 Msa0386880:CDS
CAACAGTCTAAATCCAGGGC+CGG 0.582978 3_1:-90711948 None:intergenic
CTGTTGATGCTGAATGGAAG+AGG 0.584003 3_1:+90713115 Msa0386880:CDS
AGGTCTAGCGAAACGATCAA+GGG 0.584638 3_1:-90710495 None:intergenic
CTTGCACTATTGCTGCAAAG+AGG 0.584915 3_1:+90711508 Msa0386880:CDS
TTGAGAAAACGTCCCACCCA+AGG 0.585130 3_1:+90710051 Msa0386880:five_prime_UTR
AACATACAAAACACTCCAGA+AGG 0.585254 3_1:+90713673 Msa0386880:CDS
CAACCGCTGAATGAGTTCAC+GGG 0.585454 3_1:-90711695 None:intergenic
TTAGATCTGATAAAGGGCCA+TGG 0.586575 3_1:+90712310 Msa0386880:CDS
ACTCATTCAGCGGTTGCAGA+AGG 0.587086 3_1:+90711702 Msa0386880:CDS
AGAGTTACCATTGGGTATCG+TGG 0.589722 3_1:-90712525 None:intergenic
AGGGGTCCAGACATTGTAGG+AGG 0.593227 3_1:-90710476 None:intergenic
ATACATCTACTGCCGAATCA+GGG 0.600440 3_1:+90712675 Msa0386880:CDS
GCGGGCAAGACAAGTAGTAA+AGG 0.600575 3_1:+90712464 Msa0386880:CDS
ACTACTTGTCTTGCCCGCCG+TGG 0.608753 3_1:-90712459 None:intergenic
AACTCTCGAGACAACAAACA+TGG 0.609861 3_1:+90713831 Msa0386880:CDS
CAGCGGTTGCAGAAGGTCGA+CGG 0.610486 3_1:+90711709 Msa0386880:CDS
TTTGCAGCAATAGTGCAAGC+AGG 0.612016 3_1:-90711504 None:intergenic
AAAGACAGAGAAAGAGAAAG+GGG 0.618292 3_1:-90710285 None:intergenic
TGAGAAAACGTCCCACCCAA+GGG 0.619079 3_1:+90710052 Msa0386880:five_prime_UTR
TCCTTGAACATCTAAGATTG+TGG 0.621262 3_1:-90711547 None:intergenic
CCGCCAGGGAATGAAGAATG+AGG 0.622334 3_1:+90710080 Msa0386880:five_prime_UTR
TGCTCTTGTGCAGACGAGGG+AGG 0.624988 3_1:+90712282 Msa0386880:CDS
TGTTGCGGAAGAGTAACAAA+GGG 0.626553 3_1:-90710375 None:intergenic
TAGACTGACCCCTGTTCGTG+AGG 0.627244 3_1:+90712751 Msa0386880:CDS
AGAAAGATGCTCCACAGAGG+AGG 0.627660 3_1:+90714513 Msa0386880:three_prime_UTR
ATGGTGTAGACAAGGAAGGA+AGG 0.628721 3_1:+90711361 Msa0386880:CDS
AATCTTAGATGTTCAAGGAG+TGG 0.629525 3_1:+90711551 Msa0386880:CDS
TGCGAAGCCACGATACCCAA+TGG 0.631200 3_1:+90712518 Msa0386880:CDS
TTGTTGCGGAAGAGTAACAA+AGG 0.633517 3_1:-90710376 None:intergenic
TGTGGGCTGACATGCTACAA+TGG 0.633693 3_1:+90711046 Msa0386880:CDS
GGCGGAATTGTTGAATGCTG+CGG 0.635995 3_1:+90713984 Msa0386880:CDS
GGGAGAAACATCCTCCTCTG+TGG 0.636984 3_1:-90714524 None:intergenic
TGGCCATCATGGTGTAGACA+AGG 0.641499 3_1:+90711353 Msa0386880:CDS
TGACATGCTACAATGGAGAA+GGG 0.642619 3_1:+90711053 Msa0386880:CDS
CATTCTCTTAGAAAGAAGAG+TGG 0.644440 3_1:+90710734 Msa0386880:CDS
TCCACAACAGTCTAAATCCA+GGG 0.645024 3_1:-90711952 None:intergenic
ATTTCTCAAACTCTTGCACA+TGG 0.647962 3_1:-90711464 None:intergenic
CATCATGGTGTAGACAAGGA+AGG 0.648295 3_1:+90711357 Msa0386880:CDS
ACCTGCTCTTGTGCAGACGA+GGG 0.649120 3_1:+90712279 Msa0386880:CDS
GTATGATGAATATGTTCCAA+TGG 0.652365 3_1:+90713083 Msa0386880:CDS
AACAAGCCAAGCACAGACAG+AGG 0.652528 3_1:+90713867 Msa0386880:CDS
CTGCTTCCAAAGCATCCACC+CGG 0.654601 3_1:-90714011 None:intergenic
TGAAATGCCTTACGAGAAGG+CGG 0.658641 3_1:+90713966 Msa0386880:CDS
GGGGTCCAGACATTGTAGGA+GGG 0.661895 3_1:-90710475 None:intergenic
GTACTATGAGTAAAACTAAG+CGG 0.665294 3_1:+90714620 Msa0386880:three_prime_UTR
TCTACACCATGATGGCCATG+TGG 0.666431 3_1:-90711348 None:intergenic
GCAACTTGGCTTCTTCCTGG+CGG 0.667045 3_1:-90714355 None:intergenic
TTCTCAATGGCGAACCACGG+CGG 0.670535 3_1:+90712445 Msa0386880:CDS
TGGTTCTCAATGGCGAACCA+CGG 0.670544 3_1:+90712442 Msa0386880:CDS
GAGTTACAACATGGGTACAA+CGG 0.675378 3_1:-90714579 None:intergenic
GAATGCTGCGGTCTGCCGGG+TGG 0.679946 3_1:+90713996 Msa0386880:CDS
ACTTACTTCCTCACGAACAG+GGG 0.681063 3_1:-90712759 None:intergenic
GAACGCGTGCTTCAACACAC+CGG 0.686752 3_1:-90715291 None:intergenic
CAGCCCGTGAACTCATTCAG+CGG 0.691924 3_1:+90711692 Msa0386880:CDS
CCTCATTCTTCATTCCCTGG+CGG 0.692548 3_1:-90710080 None:intergenic
GGTCTAGCGAAACGATCAAG+GGG 0.694371 3_1:-90710494 None:intergenic
CTACACCATGATGGCCATGT+GGG 0.701290 3_1:-90711347 None:intergenic
AGAGGCAAACATCTCTACAG+AGG 0.704526 3_1:+90713133 Msa0386880:CDS
GTTGTGAAGTATTACCCACA+TGG 0.705174 3_1:+90711333 Msa0386880:CDS
AAAATAAGCTAATCCAAACG+AGG 0.735067 3_1:+90710000 None:intergenic
AGTGGATAGAGTTACAACAT+GGG 0.742824 3_1:-90714587 None:intergenic
GATAGAAAGATGCTCCACAG+AGG 0.748082 3_1:+90714510 Msa0386880:three_prime_UTR
GAGTTGCCGGAATTTCTCGG+AGG 0.755589 3_1:+90712255 Msa0386880:CDS
CGACGGTGACAATTACCCCG+AGG 0.764728 3_1:+90711726 Msa0386880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTGTGTTTAATTATTAT+TGG + chr3_1:90710962-90710981 Msa0386880:intron 10.0%
!! ATAAAAAAGAAAAGAAAAGA+AGG - chr3_1:90710335-90710354 None:intergenic 15.0%
!!! TAAAATGCATATAGAATTTT+GGG + chr3_1:90711103-90711122 Msa0386880:intron 15.0%
!!! TTTTTTATGAATCAATTTTC+AGG + chr3_1:90711648-90711667 Msa0386880:intron 15.0%
!!! TTTTTATGAATCAATTTTCA+GGG + chr3_1:90711649-90711668 Msa0386880:intron 15.0%
!! AATAAGAAGATTCATTAAAA+GGG - chr3_1:90713205-90713224 None:intergenic 15.0%
!! AAATAAGAAGATTCATTAAA+AGG - chr3_1:90713206-90713225 None:intergenic 15.0%
!!! TATTTTGTTAATTATGACAT+AGG + chr3_1:90713279-90713298 Msa0386880:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr3_1:90715099-90715118 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr3_1:90715100-90715119 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr3_1:90715165-90715184 None:intergenic 15.0%
!! TTCCAATCAAATTCAAATTA+GGG + chr3_1:90710419-90710438 Msa0386880:five_prime_UTR 20.0%
!!! TTGAATTTGTTCAATTTTTC+AGG + chr3_1:90710581-90710600 Msa0386880:intron 20.0%
!!! ACTTAAAGCTTTCTTTTTTA+AGG - chr3_1:90710696-90710715 None:intergenic 20.0%
!!! GTAAAATGCATATAGAATTT+TGG + chr3_1:90711102-90711121 Msa0386880:intron 20.0%
!! AAAAAACAAAACATTAGGTA+AGG - chr3_1:90711279-90711298 None:intergenic 20.0%
!! TCAATAGAAAAGAAAAATCA+TGG - chr3_1:90712182-90712201 None:intergenic 20.0%
!! TAAATAGCAATTTGTAGAAT+AGG - chr3_1:90712790-90712809 None:intergenic 20.0%
!! ATAATAATAACTAATCTGAC+AGG + chr3_1:90712820-90712839 Msa0386880:intron 20.0%
!! TTTGCATGTAAATTTCAAAA+AGG + chr3_1:90713469-90713488 Msa0386880:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr3_1:90715030-90715049 None:intergenic 20.0%
! AGTATCATACTATCATCATA+GGG - chr3_1:90710156-90710175 None:intergenic 25.0%
! TAGTATCATACTATCATCAT+AGG - chr3_1:90710157-90710176 None:intergenic 25.0%
! AAAGAAAAGAAAAGAAGGAA+TGG - chr3_1:90710330-90710349 None:intergenic 25.0%
! CTTCCAATCAAATTCAAATT+AGG + chr3_1:90710418-90710437 Msa0386880:five_prime_UTR 25.0%
! AACCCTAATTTGAATTTGAT+TGG - chr3_1:90710424-90710443 None:intergenic 25.0%
!!! TTCAATTTTTCAGGTTTTGA+GGG + chr3_1:90710590-90710609 Msa0386880:intron 25.0%
! ATGATTACCATATGATGTTA+AGG + chr3_1:90710885-90710904 Msa0386880:CDS 25.0%
! TTTCTGATGGTTAAATAACA+TGG + chr3_1:90711149-90711168 Msa0386880:intron 25.0%
!! GAACAAGATATAGACTTTTA+GGG + chr3_1:90711171-90711190 Msa0386880:intron 25.0%
!! TATGTTTAGATGGATGATTT+TGG + chr3_1:90711194-90711213 Msa0386880:intron 25.0%
! GATGCAAAAAACAAAACATT+AGG - chr3_1:90711284-90711303 None:intergenic 25.0%
!!! AATGTTTTGTTTTTTGCATC+AGG + chr3_1:90711284-90711303 Msa0386880:intron 25.0%
! AATTGAATGATTTCAAACCT+TGG - chr3_1:90711618-90711637 None:intergenic 25.0%
! CTGACTTTGTAAAATTCTTA+AGG - chr3_1:90711675-90711694 None:intergenic 25.0%
! CAAATGTTTATCATAAATGC+CGG + chr3_1:90711929-90711948 Msa0386880:CDS 25.0%
!! AATTTAAAACAGCTAGAAGA+TGG - chr3_1:90712037-90712056 None:intergenic 25.0%
!! AATATTTCAGGATTTTTCCA+TGG - chr3_1:90712330-90712349 None:intergenic 25.0%
! GAAAAATCCTGAAATATTGA+AGG + chr3_1:90712332-90712351 Msa0386880:CDS 25.0%
!! TAGAACTATTTTGTCCAATT+GGG - chr3_1:90713250-90713269 None:intergenic 25.0%
! ATTTACATGCAAATGAAATC+CGG - chr3_1:90713462-90713481 None:intergenic 25.0%
!!! CTTTTTTACAAGTCAAAGAA+TGG - chr3_1:90713527-90713546 None:intergenic 25.0%
! AGAGTTAATTGCTACTAAAA+AGG + chr3_1:90714032-90714051 Msa0386880:CDS 25.0%
! TTAATTGCTACTAAAAAGGT+AGG + chr3_1:90714036-90714055 Msa0386880:intron 25.0%
! TTGAAGATAGTAAGAATAAG+AGG - chr3_1:90714150-90714169 None:intergenic 25.0%
! TCCAGAAAAATCAAATGTTA+GGG - chr3_1:90714275-90714294 None:intergenic 25.0%
! ATCCAGAAAAATCAAATGTT+AGG - chr3_1:90714276-90714295 None:intergenic 25.0%
!! TAGCAAAGCTAACATTTTAA+AGG + chr3_1:90714403-90714422 Msa0386880:intron 25.0%
!!! TTTTTGTTTGTCTTTGTATC+TGG + chr3_1:90714713-90714732 Msa0386880:three_prime_UTR 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr3_1:90714870-90714889 Msa0386880:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr3_1:90715031-90715050 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr3_1:90715052-90715071 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr3_1:90715053-90715072 None:intergenic 25.0%
! TGTATAAATAAAGGAGAAAG+TGG - chr3_1:90715156-90715175 None:intergenic 25.0%
ACACTATACCAAAACTAAAG+TGG + chr3_1:90710201-90710220 Msa0386880:five_prime_UTR 30.0%
CACTATACCAAAACTAAAGT+GGG + chr3_1:90710202-90710221 Msa0386880:five_prime_UTR 30.0%
TAAAGACAGAGAAAGAGAAA+GGG - chr3_1:90710289-90710308 None:intergenic 30.0%
!!! TTTTGTTCTTCTTGTTGTTG+CGG - chr3_1:90710393-90710412 None:intergenic 30.0%
!! AAATTGAAGAGGTACTTACA+AGG - chr3_1:90710518-90710537 None:intergenic 30.0%
!!! GTTCAATTTTTCAGGTTTTG+AGG + chr3_1:90710589-90710608 Msa0386880:intron 30.0%
!!! TCAATTTTTCAGGTTTTGAG+GGG + chr3_1:90710591-90710610 Msa0386880:intron 30.0%
TTGAGAATTCAGAAGATGAA+AGG + chr3_1:90710654-90710673 Msa0386880:CDS 30.0%
!!! CTTTTTTAAGGATCCAATTC+TGG - chr3_1:90710684-90710703 None:intergenic 30.0%
TCTAAGAGAATGCTTAAACT+TGG - chr3_1:90710726-90710745 None:intergenic 30.0%
! TTTGTAGATTTCTGAAAGCA+AGG + chr3_1:90710995-90711014 Msa0386880:intron 30.0%
TTGAAAAAGCAAAGCATATG+TGG + chr3_1:90711028-90711047 Msa0386880:CDS 30.0%
TGAAAAAGCAAAGCATATGT+GGG + chr3_1:90711029-90711048 Msa0386880:CDS 30.0%
! TATGCATTTTACCTGCATAA+TGG - chr3_1:90711094-90711113 None:intergenic 30.0%
! GGAACAAGATATAGACTTTT+AGG + chr3_1:90711170-90711189 Msa0386880:intron 30.0%
!!! ACTTTTAGGGTATGTTTAGA+TGG + chr3_1:90711184-90711203 Msa0386880:intron 30.0%
! TTTAGATGGATGATTTTGGA+GGG + chr3_1:90711198-90711217 Msa0386880:intron 30.0%
TAAGGCAATCAATTACTTCA+GGG - chr3_1:90711261-90711280 None:intergenic 30.0%
CCAAGTCTTTCAATATAAAC+AGG - chr3_1:90711387-90711406 None:intergenic 30.0%
CCTGTTTATATTGAAAGACT+TGG + chr3_1:90711384-90711403 Msa0386880:CDS 30.0%
! AGTGTGATATAACTAGGTTT+TGG + chr3_1:90711840-90711859 Msa0386880:intron 30.0%
AAAAACAGTAATCACACTGT+GGG - chr3_1:90711885-90711904 None:intergenic 30.0%
AAAAAACAGTAATCACACTG+TGG - chr3_1:90711886-90711905 None:intergenic 30.0%
CGGCATTTATGATAAACATT+TGG - chr3_1:90711931-90711950 None:intergenic 30.0%
CATATGACCTTCAATATTTC+AGG - chr3_1:90712342-90712361 None:intergenic 30.0%
!! GTGTTTACACTTTTTGTAGA+TGG + chr3_1:90712422-90712441 Msa0386880:intron 30.0%
! TTTTTGTAGATGGTTCTCAA+TGG + chr3_1:90712432-90712451 Msa0386880:intron 30.0%
! AAATATGTGAAGCACCAAAT+TGG - chr3_1:90712585-90712604 None:intergenic 30.0%
ACATAGTGAAAAAAAGACCT+TGG + chr3_1:90712877-90712896 Msa0386880:intron 30.0%
CACAATATCTCCAAATATTG+TGG - chr3_1:90712920-90712939 None:intergenic 30.0%
CAATATTTGGAGATATTGTG+AGG + chr3_1:90712920-90712939 Msa0386880:intron 30.0%
AAAGAGAAAATTCTCTGAAC+AGG - chr3_1:90712978-90712997 None:intergenic 30.0%
! TTCACATTCTGTTATTTGTC+AGG + chr3_1:90713020-90713039 Msa0386880:intron 30.0%
GTATGATGAATATGTTCCAA+TGG + chr3_1:90713083-90713102 Msa0386880:CDS 30.0%
TCACTAAAATTTCACCCAAT+TGG + chr3_1:90713233-90713252 Msa0386880:intron 30.0%
! GTAGAACTATTTTGTCCAAT+TGG - chr3_1:90713251-90713270 None:intergenic 30.0%
ATGCAAAATTGAGGTTGTAA+TGG - chr3_1:90713343-90713362 None:intergenic 30.0%
! ATATTGTGCTATAGCCTTTT+TGG + chr3_1:90713387-90713406 Msa0386880:intron 30.0%
! TATTGTGCTATAGCCTTTTT+GGG + chr3_1:90713388-90713407 Msa0386880:intron 30.0%
TGGATCATTCATATAGTATC+CGG + chr3_1:90713440-90713459 Msa0386880:intron 30.0%
! TTTCAAAAAGGCTTTTGATG+AGG + chr3_1:90713481-90713500 Msa0386880:intron 30.0%
! TTCAAAAAGGCTTTTGATGA+GGG + chr3_1:90713482-90713501 Msa0386880:intron 30.0%
! AAAAAAGAGTTCGAGCTTTT+AGG + chr3_1:90713540-90713559 Msa0386880:intron 30.0%
TTCTCCAGCAAAAGTTTAAT+CGG + chr3_1:90713620-90713639 Msa0386880:intron 30.0%
! AAATCCGATTAAACTTTTGC+TGG - chr3_1:90713627-90713646 None:intergenic 30.0%
TTTAATCGGATTTCCAATAC+AGG + chr3_1:90713634-90713653 Msa0386880:intron 30.0%
TCATCATTAGATGATATTGC+AGG - chr3_1:90713793-90713812 None:intergenic 30.0%
! ATCAGAAAAAGAAGTTTTGC+TGG + chr3_1:90714473-90714492 Msa0386880:intron 30.0%
GTACTATGAGTAAAACTAAG+CGG + chr3_1:90714620-90714639 Msa0386880:three_prime_UTR 30.0%
ATTACTCATACAAAAACCAG+TGG - chr3_1:90714796-90714815 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr3_1:90714832-90714851 None:intergenic 30.0%
AATAAGAAGTGAGGAAAACA+AGG - chr3_1:90714858-90714877 None:intergenic 30.0%
! TTGTTTTCCTCACTTCTTAT+TGG + chr3_1:90714857-90714876 Msa0386880:intron 30.0%
! TTTTTGACCAATAAGAAGTG+AGG - chr3_1:90714867-90714886 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_1:90714883-90714902 Msa0386880:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr3_1:90714955-90714974 None:intergenic 30.0%
TTTACTACTAAGACCTCGTT+TGG - chr3_1:90710016-90710035 None:intergenic 35.0%
AAAGACAGAGAAAGAGAAAG+GGG - chr3_1:90710288-90710307 None:intergenic 35.0%
CTAAAGACAGAGAAAGAGAA+AGG - chr3_1:90710290-90710309 None:intergenic 35.0%
GCGAGAATTGAAAATTGAAG+AGG - chr3_1:90710529-90710548 None:intergenic 35.0%
CATTCTCTTAGAAAGAAGAG+TGG + chr3_1:90710734-90710753 Msa0386880:CDS 35.0%
!! TGTTAGCTCTGTTTCTATTG+AGG + chr3_1:90710778-90710797 Msa0386880:CDS 35.0%
! TTTTCGTCAGTCTTTGATCA+TGG + chr3_1:90710838-90710857 Msa0386880:CDS 35.0%
TGGTAATCATCAAAAGCTTC+AGG - chr3_1:90710875-90710894 None:intergenic 35.0%
!! AAGAGCACCTTAACATCATA+TGG - chr3_1:90710895-90710914 None:intergenic 35.0%
!!! TTTGGGCTTTAGTTTTCGTT+TGG + chr3_1:90711120-90711139 Msa0386880:intron 35.0%
! CGTTTGGTTTATGTTTCTGA+TGG + chr3_1:90711136-90711155 Msa0386880:intron 35.0%
! GTTTAGATGGATGATTTTGG+AGG + chr3_1:90711197-90711216 Msa0386880:intron 35.0%
!! TTAGATGGATGATTTTGGAG+GGG + chr3_1:90711199-90711218 Msa0386880:intron 35.0%
GTAAGGCAATCAATTACTTC+AGG - chr3_1:90711262-90711281 None:intergenic 35.0%
ATTTCTCAAACTCTTGCACA+TGG - chr3_1:90711467-90711486 None:intergenic 35.0%
ACCACAATCTTAGATGTTCA+AGG + chr3_1:90711546-90711565 Msa0386880:CDS 35.0%
! TCCTTGAACATCTAAGATTG+TGG - chr3_1:90711550-90711569 None:intergenic 35.0%
AATCTTAGATGTTCAAGGAG+TGG + chr3_1:90711551-90711570 Msa0386880:CDS 35.0%
! TTTTTGAACGCTACGTAACT+AGG + chr3_1:90711787-90711806 Msa0386880:intron 35.0%
ACCTAGTTATATCACACTGT+GGG - chr3_1:90711838-90711857 None:intergenic 35.0%
AACCTAGTTATATCACACTG+TGG - chr3_1:90711839-90711858 None:intergenic 35.0%
AGGATCAAGAAAAGACTTGA+CGG - chr3_1:90711981-90712000 None:intergenic 35.0%
!!! TGGATCTTTGAGGTTGTTTT+AGG - chr3_1:90712001-90712020 None:intergenic 35.0%
TTAACTTACGTGGATCTTTG+AGG - chr3_1:90712011-90712030 None:intergenic 35.0%
! AAGATGGCATTTAACTTACG+TGG - chr3_1:90712021-90712040 None:intergenic 35.0%
TAATGTTTCCAACCAAGCAT+CGG - chr3_1:90712091-90712110 None:intergenic 35.0%
CTTGGTTGGAAACATTACTT+AGG + chr3_1:90712094-90712113 Msa0386880:intron 35.0%
GGAAACATTACTTAGGTTCT+TGG + chr3_1:90712101-90712120 Msa0386880:intron 35.0%
TACTTGAAGTAATTGATGCC+AGG + chr3_1:90712144-90712163 Msa0386880:CDS 35.0%
AATTGATGCCAGGTACATTA+TGG + chr3_1:90712154-90712173 Msa0386880:intron 35.0%
GATGCCTTAGATCTGATAAA+GGG + chr3_1:90712304-90712323 Msa0386880:CDS 35.0%
TGAAGGTCATATGCTATTCT+TGG + chr3_1:90712349-90712368 Msa0386880:intron 35.0%
TAAAGGTTCTCAACAGTGAA+GGG + chr3_1:90712481-90712500 Msa0386880:CDS 35.0%
TGATTGTTGCCTTAATCAAG+TGG + chr3_1:90712557-90712576 Msa0386880:intron 35.0%
! AAATTGGCTCCACTTGATTA+AGG - chr3_1:90712569-90712588 None:intergenic 35.0%
TTAATCAAGTGGAGCCAATT+TGG + chr3_1:90712568-90712587 Msa0386880:intron 35.0%
! GCTTCACATATTTTTCTCAG+TGG + chr3_1:90712592-90712611 Msa0386880:intron 35.0%
! GAATAGCTCTTCATTGCTTT+TGG - chr3_1:90712725-90712744 None:intergenic 35.0%
TTGTTGCAGTCCACAATATT+TGG + chr3_1:90712907-90712926 Msa0386880:intron 35.0%
GAAGTTATGCTAACATGTCT+GGG + chr3_1:90713061-90713080 Msa0386880:CDS 35.0%
AAATTGAGGTTGTAATGGTG+TGG - chr3_1:90713338-90713357 None:intergenic 35.0%
! ATTGTGCTATAGCCTTTTTG+GGG + chr3_1:90713389-90713408 Msa0386880:intron 35.0%
! TCAAAAAGGCTTTTGATGAG+GGG + chr3_1:90713483-90713502 Msa0386880:intron 35.0%
! GTGTTTTGTATGTTAGGAAG+AGG - chr3_1:90713667-90713686 None:intergenic 35.0%
!! TCTGGAGTGTTTTGTATGTT+AGG - chr3_1:90713673-90713692 None:intergenic 35.0%
AACATACAAAACACTCCAGA+AGG + chr3_1:90713673-90713692 Msa0386880:CDS 35.0%
AGCAAATAACATCAGGAAGA+AGG - chr3_1:90713731-90713750 None:intergenic 35.0%
GGAAAAGAGCAAATAACATC+AGG - chr3_1:90713738-90713757 None:intergenic 35.0%
TGATATTGCAGGAAGTTTGT+TGG - chr3_1:90713782-90713801 None:intergenic 35.0%
ACATCAAGAAAGCGAAGTAA+TGG + chr3_1:90714077-90714096 Msa0386880:intron 35.0%
!! GCCCTAACATTTGATTTTTC+TGG + chr3_1:90714271-90714290 Msa0386880:intron 35.0%
! GATTTTTCTGGATTGTGCAT+AGG + chr3_1:90714283-90714302 Msa0386880:intron 35.0%
AGTGGATAGAGTTACAACAT+GGG - chr3_1:90714590-90714609 None:intergenic 35.0%
CATAGTACACTGAAAAACAG+TGG - chr3_1:90714608-90714627 None:intergenic 35.0%
!!! TGTATCTGGTTTGTTTTCCT+TGG + chr3_1:90714727-90714746 Msa0386880:three_prime_UTR 35.0%
! CAACTAAAGCTTTTCAACCA+AGG - chr3_1:90714747-90714766 None:intergenic 35.0%
! GGTTGAAAAGCTTTAGTTGT+TGG + chr3_1:90714748-90714767 Msa0386880:three_prime_UTR 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr3_1:90714950-90714969 Msa0386880:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr3_1:90715017-90715036 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr3_1:90715186-90715205 Msa0386880:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG + chr3_1:90715199-90715218 Msa0386880:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG + chr3_1:90715200-90715219 Msa0386880:intron 35.0%
TATTCATGCGTGTTTACTTC+CGG + chr3_1:90715272-90715291 Msa0386880:three_prime_UTR 35.0%
AGCTGATGAAAGGGTAAAAG+AGG - chr3_1:90710241-90710260 None:intergenic 40.0%
TGTTGCGGAAGAGTAACAAA+GGG - chr3_1:90710378-90710397 None:intergenic 40.0%
TTGTTGCGGAAGAGTAACAA+AGG - chr3_1:90710379-90710398 None:intergenic 40.0%
TTGTAGGAGGGAGTTGAATT+AGG - chr3_1:90710466-90710485 None:intergenic 40.0%
GATGAAAGGAGAACCAGAAT+TGG + chr3_1:90710668-90710687 Msa0386880:CDS 40.0%
CTCTTAGAAAGAAGAGTGGT+AGG + chr3_1:90710738-90710757 Msa0386880:CDS 40.0%
TGAGGATGTTAGAGATGTTG+AGG + chr3_1:90710796-90710815 Msa0386880:CDS 40.0%
TGACATGCTACAATGGAGAA+GGG + chr3_1:90711053-90711072 Msa0386880:CDS 40.0%
CAAATCCAGGGATTTGGAAA+GGG - chr3_1:90711232-90711251 None:intergenic 40.0%
TCAAATCCAGGGATTTGGAA+AGG - chr3_1:90711233-90711252 None:intergenic 40.0%
TATGCTCAAATCCAGGGATT+TGG - chr3_1:90711238-90711257 None:intergenic 40.0%
!!! GCATCAGGATTTTGAGTTCA+AGG + chr3_1:90711299-90711318 Msa0386880:intron 40.0%
! GTTGTGAAGTATTACCCACA+TGG + chr3_1:90711333-90711352 Msa0386880:CDS 40.0%
! GTAACCTGCATCAGTTTGTT+CGG - chr3_1:90711420-90711439 None:intergenic 40.0%
ACTGATGCAGGTTACAACTA+TGG + chr3_1:90711425-90711444 Msa0386880:CDS 40.0%
ACTGTGGGAATAGTAACAGT+TGG - chr3_1:90711823-90711842 None:intergenic 40.0%
TCCCACAGTGTGATATAACT+AGG + chr3_1:90711834-90711853 Msa0386880:intron 40.0%
TCCACAACAGTCTAAATCCA+GGG - chr3_1:90711955-90711974 None:intergenic 40.0%
AATGTTTCCAACCAAGCATC+GGG - chr3_1:90712090-90712109 None:intergenic 40.0%
AGTGCGCAATGTGTTAAGTT+AGG - chr3_1:90712226-90712245 None:intergenic 40.0%
CACTTAATGTAGTGAGTTGC+CGG + chr3_1:90712242-90712261 Msa0386880:intron 40.0%
GGATGCCTTAGATCTGATAA+AGG + chr3_1:90712303-90712322 Msa0386880:CDS 40.0%
ATGGCCCTTTATCAGATCTA+AGG - chr3_1:90712311-90712330 None:intergenic 40.0%
TTAGATCTGATAAAGGGCCA+TGG + chr3_1:90712310-90712329 Msa0386880:CDS 40.0%
! ATACCCGTCTGACTTGTAAT+AGG + chr3_1:90712386-90712405 Msa0386880:intron 40.0%
TCAGCCTATTACAAGTCAGA+CGG - chr3_1:90712393-90712412 None:intergenic 40.0%
GTAAAGGTTCTCAACAGTGA+AGG + chr3_1:90712480-90712499 Msa0386880:CDS 40.0%
! TTTTGTTACTCTCACCGAAC+AGG + chr3_1:90712640-90712659 Msa0386880:intron 40.0%
! ATCGCTTCCTTTTACCTGTT+CGG - chr3_1:90712657-90712676 None:intergenic 40.0%
ATACATCTACTGCCGAATCA+GGG + chr3_1:90712675-90712694 Msa0386880:CDS 40.0%
ACTAATCTGACAGGACATTG+TGG + chr3_1:90712829-90712848 Msa0386880:intron 40.0%
ACTGCAACAAACAACAACCA+AGG - chr3_1:90712897-90712916 None:intergenic 40.0%
ATTTGTCAGGCTAAGATAGC+AGG + chr3_1:90713033-90713052 Msa0386880:intron 40.0%
GGAAGTTATGCTAACATGTC+TGG + chr3_1:90713060-90713079 Msa0386880:CDS 40.0%
TCAACAGGTTTGTCTACCAT+TGG - chr3_1:90713102-90713121 None:intergenic 40.0%
ACAAACCTGTTGATGCTGAA+TGG + chr3_1:90713109-90713128 Msa0386880:CDS 40.0%
! AAGAAGCCACCAACCTTTTA+AGG - chr3_1:90713166-90713185 None:intergenic 40.0%
!! TTAAAAGGTTGGTGGCTTCT+TGG + chr3_1:90713165-90713184 Msa0386880:intron 40.0%
! CAACCTCAATTTTGCATTCG+TGG + chr3_1:90713346-90713365 Msa0386880:intron 40.0%
CAACCACGAATGCAAAATTG+AGG - chr3_1:90713352-90713371 None:intergenic 40.0%
! TCCACGCTGATTGACAATTA+TGG + chr3_1:90713420-90713439 Msa0386880:intron 40.0%
TCCATAATTGTCAATCAGCG+TGG - chr3_1:90713424-90713443 None:intergenic 40.0%
! CAAAAAGGCTTTTGATGAGG+GGG + chr3_1:90713484-90713503 Msa0386880:intron 40.0%
! TAGTGCTTGATAGCATTGCT+TGG + chr3_1:90713568-90713587 Msa0386880:intron 40.0%
!! ATGTTTGTTGTCTCGAGAGT+TGG - chr3_1:90713832-90713851 None:intergenic 40.0%
AACTCTCGAGACAACAAACA+TGG + chr3_1:90713831-90713850 Msa0386880:CDS 40.0%
! TTCTCGTAAGGCATTTCAGA+TGG - chr3_1:90713964-90713983 None:intergenic 40.0%
! ATCTGAAATGCCTTACGAGA+AGG + chr3_1:90713963-90713982 Msa0386880:CDS 40.0%
GTCACCTCTTCTTGCTAAAA+TGG + chr3_1:90714188-90714207 Msa0386880:intron 40.0%
!!! CATGCCATTTTAGCAAGAAG+AGG - chr3_1:90714195-90714214 None:intergenic 40.0%
CTCTTCTTGCTAAAATGGCA+TGG + chr3_1:90714193-90714212 Msa0386880:intron 40.0%
! AGTTTTGCTGGTGAGCTATA+TGG + chr3_1:90714485-90714504 Msa0386880:exon 40.0%
GAGTTACAACATGGGTACAA+CGG - chr3_1:90714582-90714601 None:intergenic 40.0%
CAGTGGATAGAGTTACAACA+TGG - chr3_1:90714591-90714610 None:intergenic 40.0%
AGCTAGCAAAGATGCTATTC+TGG - chr3_1:90714671-90714690 None:intergenic 40.0%
TTCTTGCTTATCTTGTCCAC+TGG + chr3_1:90714777-90714796 Msa0386880:three_prime_UTR 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr3_1:90714893-90714912 Msa0386880:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr3_1:90715016-90715035 None:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG - chr3_1:90715202-90715221 None:intergenic 40.0%
TTGCCTCATTCTTCATTCCC+TGG - chr3_1:90710086-90710105 None:intergenic 45.0%
!! TGTGGGTCCCACTTTAGTTT+TGG - chr3_1:90710212-90710231 None:intergenic 45.0%
GGTAAAAGAGGAGCAGTTGT+GGG - chr3_1:90710229-90710248 None:intergenic 45.0%
TTTACCCTTTCATCAGCTGC+AGG + chr3_1:90710243-90710262 Msa0386880:five_prime_UTR 45.0%
AGGTCTAGCGAAACGATCAA+GGG - chr3_1:90710498-90710517 None:intergenic 45.0%
AAGGTCTAGCGAAACGATCA+AGG - chr3_1:90710499-90710518 None:intergenic 45.0%
!!! TCAGGTTTTGAGGGGTTTTC+TGG + chr3_1:90710599-90710618 Msa0386880:intron 45.0%
AGTGGTAGGAGAAAGAGTGA+TGG + chr3_1:90710752-90710771 Msa0386880:CDS 45.0%
CTGACATGCTACAATGGAGA+AGG + chr3_1:90711052-90711071 Msa0386880:CDS 45.0%
CTACAATGGAGAAGGGAGTT+TGG + chr3_1:90711060-90711079 Msa0386880:CDS 45.0%
TCAGGGTATGCTCAAATCCA+GGG - chr3_1:90711244-90711263 None:intergenic 45.0%
TTCAGGGTATGCTCAAATCC+AGG - chr3_1:90711245-90711264 None:intergenic 45.0%
TATTACCCACATGGCCATCA+TGG + chr3_1:90711342-90711361 Msa0386880:CDS 45.0%
CTTCCTTGTCTACACCATGA+TGG - chr3_1:90711359-90711378 None:intergenic 45.0%
CATCATGGTGTAGACAAGGA+AGG + chr3_1:90711357-90711376 Msa0386880:CDS 45.0%
ATGGTGTAGACAAGGAAGGA+AGG + chr3_1:90711361-90711380 Msa0386880:CDS 45.0%
TGATCCGAACAAACTGATGC+AGG + chr3_1:90711413-90711432 Msa0386880:CDS 45.0%
TTTGCAGCAATAGTGCAAGC+AGG - chr3_1:90711507-90711526 None:intergenic 45.0%
CTTGCACTATTGCTGCAAAG+AGG + chr3_1:90711508-90711527 Msa0386880:CDS 45.0%
GCTTTCAGTTGAACGCAAAG+AGG - chr3_1:90711596-90711615 None:intergenic 45.0%
TTGCGTTCAACTGAAAGCCA+AGG + chr3_1:90711598-90711617 Msa0386880:intron 45.0%
ACAATGAGATATCGCACCTC+GGG - chr3_1:90711745-90711764 None:intergenic 45.0%
GACAATGAGATATCGCACCT+CGG - chr3_1:90711746-90711765 None:intergenic 45.0%
TTTATCATAAATGCCGGCCC+TGG + chr3_1:90711935-90711954 Msa0386880:CDS 45.0%
CTCCACAACAGTCTAAATCC+AGG - chr3_1:90711956-90711975 None:intergenic 45.0%
TCATGGAGCCATAATGTACC+TGG - chr3_1:90712165-90712184 None:intergenic 45.0%
AGTGAGTTGCCGGAATTTCT+CGG + chr3_1:90712252-90712271 Msa0386880:intron 45.0%
CAGCCTATTACAAGTCAGAC+GGG - chr3_1:90712392-90712411 None:intergenic 45.0%
! AGAGTTACCATTGGGTATCG+TGG - chr3_1:90712528-90712547 None:intergenic 45.0%
CCATGCGAAGAGTTACCATT+GGG - chr3_1:90712536-90712555 None:intergenic 45.0%
ACTCTCACCGAACAGGTAAA+AGG + chr3_1:90712647-90712666 Msa0386880:intron 45.0%
GATACATCTACTGCCGAATC+AGG + chr3_1:90712674-90712693 Msa0386880:CDS 45.0%
TTCAGCTTCTGACCCTGATT+CGG - chr3_1:90712690-90712709 None:intergenic 45.0%
ACTTACTTCCTCACGAACAG+GGG - chr3_1:90712762-90712781 None:intergenic 45.0%
GACTTACTTCCTCACGAACA+GGG - chr3_1:90712763-90712782 None:intergenic 45.0%
AGACTTACTTCCTCACGAAC+AGG - chr3_1:90712764-90712783 None:intergenic 45.0%
TCAGGCTAAGATAGCAGGAA+AGG + chr3_1:90713038-90713057 Msa0386880:intron 45.0%
CAGGCTAAGATAGCAGGAAA+GGG + chr3_1:90713039-90713058 Msa0386880:intron 45.0%
CTCTTCCATTCAGCATCAAC+AGG - chr3_1:90713117-90713136 None:intergenic 45.0%
CTGTTGATGCTGAATGGAAG+AGG + chr3_1:90713115-90713134 Msa0386880:CDS 45.0%
AGAGGCAAACATCTCTACAG+AGG + chr3_1:90713133-90713152 Msa0386880:CDS 45.0%
CAGAGGTCTCACACCTTAAA+AGG + chr3_1:90713150-90713169 Msa0386880:CDS 45.0%
GGTCTCACACCTTAAAAGGT+TGG + chr3_1:90713154-90713173 Msa0386880:intron 45.0%
CTCACACCTTAAAAGGTTGG+TGG + chr3_1:90713157-90713176 Msa0386880:intron 45.0%
TTGCATTCGTGGTTGCAGTA+CGG + chr3_1:90713357-90713376 Msa0386880:intron 45.0%
!!! TGCTATAGCCTTTTTGGGGT+TGG + chr3_1:90713393-90713412 Msa0386880:intron 45.0%
AAGAGGACGTGTTCCTGTAT+TGG - chr3_1:90713650-90713669 None:intergenic 45.0%
CTCCAGAAGGAGTTAAAGCT+CGG + chr3_1:90713686-90713705 Msa0386880:CDS 45.0%
TCCAGAAGGAGTTAAAGCTC+GGG + chr3_1:90713687-90713706 Msa0386880:CDS 45.0%
AAGGAGTTAAAGCTCGGGTT+TGG + chr3_1:90713692-90713711 Msa0386880:CDS 45.0%
AGGAGTTAAAGCTCGGGTTT+GGG + chr3_1:90713693-90713712 Msa0386880:CDS 45.0%
!! CAGGAAGTTTGTTGGTCATG+CGG - chr3_1:90713774-90713793 None:intergenic 45.0%
! GATTTTCCTCTGTCTGTGCT+TGG - chr3_1:90713876-90713895 None:intergenic 45.0%
TCTTTCCCTCCTTGCTGAAA+AGG + chr3_1:90713896-90713915 Msa0386880:CDS 45.0%
! CCTAACCTTTTCAGCAAGGA+GGG - chr3_1:90713904-90713923 None:intergenic 45.0%
! ACCTAACCTTTTCAGCAAGG+AGG - chr3_1:90713905-90713924 None:intergenic 45.0%
! CTCACCTAACCTTTTCAGCA+AGG - chr3_1:90713908-90713927 None:intergenic 45.0%
GTTAGGTGAGCTTGAAGAGA+AGG + chr3_1:90713918-90713937 Msa0386880:CDS 45.0%
TGAAATGCCTTACGAGAAGG+CGG + chr3_1:90713966-90713985 Msa0386880:CDS 45.0%
AACAATTCCGCCTTCTCGTA+AGG - chr3_1:90713976-90713995 None:intergenic 45.0%
CCGTCTTCGGTAACAAATCT+GGG - chr3_1:90714251-90714270 None:intergenic 45.0%
!! CCCAGATTTGTTACCGAAGA+CGG + chr3_1:90714248-90714267 Msa0386880:intron 45.0%
!! CCAGATTTGTTACCGAAGAC+GGG + chr3_1:90714249-90714268 Msa0386880:intron 45.0%
! CTCTCTACGAAGCGTTAATG+AGG + chr3_1:90714306-90714325 Msa0386880:CDS 45.0%
AAGCCAAGTTGCGAGTAAGT+TGG + chr3_1:90714366-90714385 Msa0386880:intron 45.0%
ATGCCAACTTACTCGCAACT+TGG - chr3_1:90714372-90714391 None:intergenic 45.0%
GATAGAAAGATGCTCCACAG+AGG + chr3_1:90714510-90714529 Msa0386880:three_prime_UTR 45.0%
AGTACAACTGTGATCGTGCT+GGG - chr3_1:90714547-90714566 None:intergenic 45.0%
AAGTACAACTGTGATCGTGC+TGG - chr3_1:90714548-90714567 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG + chr3_1:90715204-90715223 Msa0386880:intron 45.0%
TTGAGAAAACGTCCCACCCA+AGG + chr3_1:90710051-90710070 Msa0386880:five_prime_UTR 50.0%
TGAGAAAACGTCCCACCCAA+GGG + chr3_1:90710052-90710071 Msa0386880:five_prime_UTR 50.0%
CCTCATTCTTCATTCCCTGG+CGG - chr3_1:90710083-90710102 None:intergenic 50.0%
GGGTAAAAGAGGAGCAGTTG+TGG - chr3_1:90710230-90710249 None:intergenic 50.0%
ACTGCCTGCAGCTGATGAAA+GGG - chr3_1:90710250-90710269 None:intergenic 50.0%
CAACTCCCTCCTACAATGTC+TGG + chr3_1:90710470-90710489 Msa0386880:exon 50.0%
TCAAGGGGTCCAGACATTGT+AGG - chr3_1:90710482-90710501 None:intergenic 50.0%
GGTCTAGCGAAACGATCAAG+GGG - chr3_1:90710497-90710516 None:intergenic 50.0%
! TGTGGGCTGACATGCTACAA+TGG + chr3_1:90711046-90711065 Msa0386880:CDS 50.0%
!! TGGTGCTGACACCATTATGC+AGG + chr3_1:90711080-90711099 Msa0386880:CDS 50.0%
AGCTTCCCTTTCCAAATCCC+TGG + chr3_1:90711224-90711243 Msa0386880:intron 50.0%
CTACACCATGATGGCCATGT+GGG - chr3_1:90711350-90711369 None:intergenic 50.0%
TCTACACCATGATGGCCATG+TGG - chr3_1:90711351-90711370 None:intergenic 50.0%
TGGCCATCATGGTGTAGACA+AGG + chr3_1:90711353-90711372 Msa0386880:CDS 50.0%
CAACCGCTGAATGAGTTCAC+GGG - chr3_1:90711698-90711717 None:intergenic 50.0%
GCAACCGCTGAATGAGTTCA+CGG - chr3_1:90711699-90711718 None:intergenic 50.0%
ACTCATTCAGCGGTTGCAGA+AGG + chr3_1:90711702-90711721 Msa0386880:CDS 50.0%
CAATGAGATATCGCACCTCG+GGG - chr3_1:90711744-90711763 None:intergenic 50.0%
CAACAGTCTAAATCCAGGGC+CGG - chr3_1:90711951-90711970 None:intergenic 50.0%
GCCCTGGATTTAGACTGTTG+TGG + chr3_1:90711951-90711970 Msa0386880:CDS 50.0%
CAGGTACCTCCGAGAAATTC+CGG - chr3_1:90712264-90712283 None:intergenic 50.0%
TGGTTCTCAATGGCGAACCA+CGG + chr3_1:90712442-90712461 Msa0386880:CDS 50.0%
GCGGGCAAGACAAGTAGTAA+AGG + chr3_1:90712464-90712483 Msa0386880:CDS 50.0%
GGTTCTCAACAGTGAAGGGA+AGG + chr3_1:90712485-90712504 Msa0386880:CDS 50.0%
CCCAATGGTAACTCTTCGCA+TGG + chr3_1:90712533-90712552 Msa0386880:intron 50.0%
GCCATGCGAAGAGTTACCAT+TGG - chr3_1:90712537-90712556 None:intergenic 50.0%
TGGAGTAGCCAACCCCAAAA+AGG - chr3_1:90713404-90713423 None:intergenic 50.0%
TTGATGAGGGGGTCTGTTAG+AGG + chr3_1:90713495-90713514 Msa0386880:intron 50.0%
! ACCCGAGCTTTAACTCCTTC+TGG - chr3_1:90713691-90713710 None:intergenic 50.0%
TCATGCGGCAAGCAACTTGA+CGG - chr3_1:90713759-90713778 None:intergenic 50.0%
!! GTCTGTGCTTGGCTTGTTGA+AGG - chr3_1:90713865-90713884 None:intergenic 50.0%
AACAAGCCAAGCACAGACAG+AGG + chr3_1:90713867-90713886 Msa0386880:CDS 50.0%
CCCTCCTTGCTGAAAAGGTT+AGG + chr3_1:90713901-90713920 Msa0386880:CDS 50.0%
CCCGTCTTCGGTAACAAATC+TGG - chr3_1:90714252-90714271 None:intergenic 50.0%
CAAATGTTAGGGCCCGTCTT+CGG - chr3_1:90714264-90714283 None:intergenic 50.0%
AGAAAGATGCTCCACAGAGG+AGG + chr3_1:90714513-90714532 Msa0386880:three_prime_UTR 50.0%
TTTGTATACTCCCTCCGTCC+CGG + chr3_1:90714995-90715014 Msa0386880:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr3_1:90715012-90715031 None:intergenic 50.0%
GTCAATTAAACCGGGACGGA+GGG + chr3_1:90715208-90715227 Msa0386880:intron 50.0%
CCGCCAGGGAATGAAGAATG+AGG + chr3_1:90710080-90710099 Msa0386880:five_prime_UTR 55.0%
CACTGCCTGCAGCTGATGAA+AGG - chr3_1:90710251-90710270 None:intergenic 55.0%
GGGGTCCAGACATTGTAGGA+GGG - chr3_1:90710478-90710497 None:intergenic 55.0%
AGGGGTCCAGACATTGTAGG+AGG - chr3_1:90710479-90710498 None:intergenic 55.0%
CAGCCCGTGAACTCATTCAG+CGG + chr3_1:90711692-90711711 Msa0386880:CDS 55.0%
TGCTGACATTGCCCGATGCT+TGG + chr3_1:90712076-90712095 Msa0386880:intron 55.0%
GACATTGCCCGATGCTTGGT+TGG + chr3_1:90712080-90712099 Msa0386880:intron 55.0%
GAGTTGCCGGAATTTCTCGG+AGG + chr3_1:90712255-90712274 Msa0386880:CDS 55.0%
TACCTGCTCTTGTGCAGACG+AGG + chr3_1:90712278-90712297 Msa0386880:CDS 55.0%
ACCTGCTCTTGTGCAGACGA+GGG + chr3_1:90712279-90712298 Msa0386880:CDS 55.0%
TTCTCAATGGCGAACCACGG+CGG + chr3_1:90712445-90712464 Msa0386880:CDS 55.0%
TGCGAAGCCACGATACCCAA+TGG + chr3_1:90712518-90712537 Msa0386880:CDS 55.0%
CACGAACAGGGGTCAGTCTA+AGG - chr3_1:90712751-90712770 None:intergenic 55.0%
TAGACTGACCCCTGTTCGTG+AGG + chr3_1:90712751-90712770 Msa0386880:CDS 55.0%
CATCAGGAAGAAGGCAGCCA+GGG - chr3_1:90713722-90713741 None:intergenic 55.0%
ACATCAGGAAGAAGGCAGCC+AGG - chr3_1:90713723-90713742 None:intergenic 55.0%
! CTGCTTCCAAAGCATCCACC+CGG - chr3_1:90714014-90714033 None:intergenic 55.0%
GCTTGCTTACATAGACCGCC+AGG + chr3_1:90714340-90714359 Msa0386880:CDS 55.0%
GCAACTTGGCTTCTTCCTGG+CGG - chr3_1:90714358-90714377 None:intergenic 55.0%
CTCGCAACTTGGCTTCTTCC+TGG - chr3_1:90714361-90714380 None:intergenic 55.0%
GGGAGAAACATCCTCCTCTG+TGG - chr3_1:90714527-90714546 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr3_1:90715008-90715027 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG + chr3_1:90715207-90715226 Msa0386880:intron 55.0%
GAACGCGTGCTTCAACACAC+CGG - chr3_1:90715294-90715313 None:intergenic 55.0%
AAACGTCCCACCCAAGGGCA+AGG + chr3_1:90710057-90710076 Msa0386880:five_prime_UTR 60.0%
CAGCGGTTGCAGAAGGTCGA+CGG + chr3_1:90711709-90711728 Msa0386880:CDS 60.0%
CGACGGTGACAATTACCCCG+AGG + chr3_1:90711726-90711745 Msa0386880:CDS 60.0%
TCCCTCGTCTGCACAAGAGC+AGG - chr3_1:90712283-90712302 None:intergenic 60.0%
TGCTCTTGTGCAGACGAGGG+AGG + chr3_1:90712282-90712301 Msa0386880:CDS 60.0%
TCTCAATGGCGAACCACGGC+GGG + chr3_1:90712446-90712465 Msa0386880:CDS 60.0%
ACTACTTGTCTTGCCCGCCG+TGG - chr3_1:90712462-90712481 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr3_1:90715009-90715028 None:intergenic 60.0%
AGCAGATACTCCCTCCGTCC+CGG - chr3_1:90715221-90715240 None:intergenic 60.0%
AGCTCGGGTTTGGGTAGCCC+TGG + chr3_1:90713702-90713721 Msa0386880:CDS 65.0%
TGGCGGCCTTGCCCTTGGGT+GGG - chr3_1:90710066-90710085 None:intergenic 70.0%
ACCCAAGGGCAAGGCCGCCA+GGG + chr3_1:90710066-90710085 Msa0386880:five_prime_UTR 70.0%
TCCCTGGCGGCCTTGCCCTT+GGG - chr3_1:90710070-90710089 None:intergenic 70.0%
TTCCCTGGCGGCCTTGCCCT+TGG - chr3_1:90710071-90710090 None:intergenic 70.0%
CTGGCGGCCTTGCCCTTGGG+TGG - chr3_1:90710067-90710086 None:intergenic 75.0%
CACCCAAGGGCAAGGCCGCC+AGG + chr3_1:90710065-90710084 Msa0386880:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90710006 90715339 90710006 ID=Msa0386880;Name=Msa0386880
chr3_1 mRNA 90710006 90715339 90710006 ID=Msa0386880-mRNA-1;Parent=Msa0386880;Name=Msa0386880-mRNA-1;_AED=0.14;_eAED=0.14;_QI=479|1|1|1|0.92|0.86|15|417|623
chr3_1 exon 90710006 90710518 90710006 ID=Msa0386880-mRNA-1:exon:25113;Parent=Msa0386880-mRNA-1
chr3_1 exon 90710603 90710906 90710603 ID=Msa0386880-mRNA-1:exon:25114;Parent=Msa0386880-mRNA-1
chr3_1 exon 90711002 90711101 90711002 ID=Msa0386880-mRNA-1:exon:25115;Parent=Msa0386880-mRNA-1
chr3_1 exon 90711306 90711572 90711306 ID=Msa0386880-mRNA-1:exon:25116;Parent=Msa0386880-mRNA-1
chr3_1 exon 90711670 90711747 90711670 ID=Msa0386880-mRNA-1:exon:25117;Parent=Msa0386880-mRNA-1
chr3_1 exon 90711920 90712021 90711920 ID=Msa0386880-mRNA-1:exon:25118;Parent=Msa0386880-mRNA-1
chr3_1 exon 90712116 90712165 90712116 ID=Msa0386880-mRNA-1:exon:25119;Parent=Msa0386880-mRNA-1
chr3_1 exon 90712254 90712353 90712254 ID=Msa0386880-mRNA-1:exon:25120;Parent=Msa0386880-mRNA-1
chr3_1 exon 90712441 90712539 90712441 ID=Msa0386880-mRNA-1:exon:25121;Parent=Msa0386880-mRNA-1
chr3_1 exon 90712662 90712775 90712662 ID=Msa0386880-mRNA-1:exon:25122;Parent=Msa0386880-mRNA-1
chr3_1 exon 90713042 90713171 90713042 ID=Msa0386880-mRNA-1:exon:25123;Parent=Msa0386880-mRNA-1
chr3_1 exon 90713656 90714053 90713656 ID=Msa0386880-mRNA-1:exon:25124;Parent=Msa0386880-mRNA-1
chr3_1 exon 90714305 90714379 90714305 ID=Msa0386880-mRNA-1:exon:25125;Parent=Msa0386880-mRNA-1
chr3_1 exon 90714478 90714804 90714478 ID=Msa0386880-mRNA-1:exon:25126;Parent=Msa0386880-mRNA-1
chr3_1 exon 90715229 90715339 90715229 ID=Msa0386880-mRNA-1:exon:25127;Parent=Msa0386880-mRNA-1
chr3_1 five_prime_UTR 90710006 90710484 90710006 ID=Msa0386880-mRNA-1:five_prime_utr;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90710485 90710518 90710485 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90710603 90710906 90710603 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90711002 90711101 90711002 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90711306 90711572 90711306 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90711670 90711747 90711670 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90711920 90712021 90711920 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90712116 90712165 90712116 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90712254 90712353 90712254 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90712441 90712539 90712441 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90712662 90712775 90712662 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90713042 90713171 90713042 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90713656 90714053 90713656 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90714305 90714379 90714305 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 CDS 90714478 90714498 90714478 ID=Msa0386880-mRNA-1:cds;Parent=Msa0386880-mRNA-1
chr3_1 three_prime_UTR 90714499 90714804 90714499 ID=Msa0386880-mRNA-1:three_prime_utr;Parent=Msa0386880-mRNA-1
chr3_1 three_prime_UTR 90715229 90715339 90715229 ID=Msa0386880-mRNA-1:three_prime_utr;Parent=Msa0386880-mRNA-1
Gene Sequence

>Msa0386880

ATGTCTGGACCCCTTGATCGTTTCGCTAGACCTTGTTTTGAGGGGTTTTCTGGCAGTGATGAGAAGCGAGAGAGAAGATCTGATTTTGAGAATTCAGAAGATGAAAGGAGAACCAGAATTGGATCCTTAAAAAAGAAAGCTTTAAGTGCATCAACCAAGTTTAAGCATTCTCTTAGAAAGAAGAGTGGTAGGAGAAAGAGTGATGGACGTGTTAGCTCTGTTTCTATTGAGGATGTTAGAGATGTTGAGGAGCTTCAAGCTGTTGATGCTTTTCGTCAGTCTTTGATCATGGATGAGTTGCTTCCTGAAGCTTTTGATGATTACCATATGATGTTAAGATTTCTGAAAGCAAGGAAATTTGATATTGAAAAAGCAAAGCATATGTGGGCTGACATGCTACAATGGAGAAGGGAGTTTGGTGCTGACACCATTATGCAGGATTTTGAGTTCAAGGAGTTAAATGAAGTTGTGAAGTATTACCCACATGGCCATCATGGTGTAGACAAGGAAGGAAGGCCTGTTTATATTGAAAGACTTGGAAAAGTTGATCCGAACAAACTGATGCAGGTTACAACTATGGATAGATATGTTAAGTACCATGTGCAAGAGTTTGAGAAATCTTTTGCAATAAAGTTTCCTGCTTGCACTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGAGTGGGCCTTAAGAATTTTACAAAGTCAGCCCGTGAACTCATTCAGCGGTTGCAGAAGGTCGACGGTGACAATTACCCCGAGACACTCTGCCAAATGTTTATCATAAATGCCGGCCCTGGATTTAGACTGTTGTGGAGCACCGTCAAGTCTTTTCTTGATCCTAAAACAACCTCAAAGATCCACGTTCTTGGAAACAAGTATCAGAGCAAATTACTTGAAGTAATTGATGCCAGTGAGTTGCCGGAATTTCTCGGAGGTACCTGCTCTTGTGCAGACGAGGGAGGATGCCTTAGATCTGATAAAGGGCCATGGAAAAATCCTGAAATATTGAAGATGGTTCTCAATGGCGAACCACGGCGGGCAAGACAAGTAGTAAAGGTTCTCAACAGTGAAGGGAAGGTTATTGCATATGCGAAGCCACGATACCCAATGGTAAAAGGAAGCGATACATCTACTGCCGAATCAGGGTCAGAAGCTGAAGATATAGCTTCTCCAAAAGCAATGAAGAGCTATTCACACCTTAGACTGACCCCTGTTCGTGAGGAAGCTAAGATAGCAGGAAAGGGAAGTTATGCTAACATGTCTGGGTATGATGAATATGTTCCAATGGTAGACAAACCTGTTGATGCTGAATGGAAGAGGCAAACATCTCTACAGAGGTCTCACACCTTAAAAGGAACACGTCCTCTTCCTAACATACAAAACACTCCAGAAGGAGTTAAAGCTCGGGTTTGGGTAGCCCTGGCTGCCTTCTTCCTGATGTTATTTGCTCTTTTCCGTCAAGTTGCTTGCCGCATGACCAACAAACTTCCTGCAATATCATCTAATGATGATCAGAGAATTTCAGAACCAACTCTCGAGACAACAAACATGGAAGTTCTTCCTTCAACAAGCCAAGCACAGACAGAGGAAAATCTCTTTCCCTCCTTGCTGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGACACACTACAATCTAAGCCATCTGAAATGCCTTACGAGAAGGCGGAATTGTTGAATGCTGCGGTCTGCCGGGTGGATGCTTTGGAAGCAGAGTTAATTGCTACTAAAAAGGCTCTCTACGAAGCGTTAATGAGGCAAGAAGAGCTGCTTGCTTACATAGACCGCCAGGAAGAAGCCAAGTTGCGAAAAAAGAAGTTTTGCTGGTGA
Protein sequence

>Msa0386880

MSGPLDRFARPCFEGFSGSDEKRERRSDFENSEDERRTRIGSLKKKALSASTKFKHSLRKKSGRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPEAFDDYHMMLRFLKARKFDIEKAKHMWADMLQWRREFGADTIMQDFEFKELNEVVKYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVQEFEKSFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIQRLQKVDGDNYPETLCQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCSCADEGGCLRSDKGPWKNPEILKMVLNGEPRRARQVVKVLNSEGKVIAYAKPRYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKIAGKGSYANMSGYDEYVPMVDKPVDAEWKRQTSLQRSHTLKGTRPLPNIQNTPEGVKARVWVALAAFFLMLFALFRQVACRMTNKLPAISSNDDQRISEPTLETTNMEVLPSTSQAQTEENLFPSLLKRLGELEEKVDTLQSKPSEMPYEKAELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDRQEEAKLRKKKFCW*