AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138330 MtrunA17_Chr1g0157471 98.330 479 8 0 1 479 1 479 0.0 975
Msa0138330 MtrunA17_Chr3g0136511 33.420 383 220 11 15 382 10 372 3.42e-47 171
Msa0138330 MtrunA17_Chr4g0033711 26.542 373 238 7 12 377 14 357 1.37e-25 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138330 AT2G33630.1 68.058 479 151 2 1 479 1 477 0.0 698
Msa0138330 AT1G47290.1 34.759 374 212 9 15 377 13 365 2.12e-57 195
Msa0138330 AT1G47290.2 34.853 373 211 9 15 376 13 364 4.49e-57 196
Msa0138330 AT2G26260.1 34.817 382 214 11 15 382 13 373 1.36e-53 189
Msa0138330 AT2G26260.2 36.268 284 160 8 103 382 16 282 1.28e-45 166
Msa0138330 AT2G43420.1 29.167 384 230 13 12 383 13 366 8.20e-31 125

Find 179 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTTATAATGGCAAGTA+TGG 0.214205 1_3:+71165146 Msa0138330:CDS
AGTAAGAATTTATTTCTTAT+TGG 0.234471 1_3:+71162176 Msa0138330:five_prime_UTR
AATGGCAAGTATGGGACTTT+TGG 0.239198 1_3:+71165155 Msa0138330:CDS
ATGCTTGGTACCTGGCTAAA+AGG 0.246074 1_3:+71166500 Msa0138330:CDS
ATATCCTGGTTCACTCAATA+TGG 0.267400 1_3:-71162481 None:intergenic
TCTTATATCCATTGCTTAAT+CGG 0.284715 1_3:+71165444 Msa0138330:CDS
GTAAGAATTTATTTCTTATT+GGG 0.288164 1_3:+71162177 Msa0138330:five_prime_UTR
AGCCAGGTACCAAGCATAAA+TGG 0.288704 1_3:-71166494 None:intergenic
CCTTGTCCTTGCTCTTATAA+TGG 0.294695 1_3:+71165137 Msa0138330:CDS
GTATTCCACGTTGCTGCCTT+TGG 0.307989 1_3:+71164140 Msa0138330:CDS
TCTCTTTCCCGTCAATTTCA+TGG 0.317085 1_3:+71166710 Msa0138330:three_prime_UTR
TCATTTCTTAACATTAACTA+TGG 0.321714 1_3:-71166665 None:intergenic
TCAATGCAAGAGGCTGGTTT+TGG 0.327605 1_3:+71166533 Msa0138330:CDS
AGGTAGATTTACTCGTTTGC+AGG 0.331840 1_3:+71162323 Msa0138330:five_prime_UTR
CAATGCAAGCGTCGAGTATA+TGG 0.342847 1_3:-71164226 None:intergenic
AGCACATACAATGTTGTCTT+TGG 0.343034 1_3:+71164278 Msa0138330:CDS
CCTCTGTTTCCAGTAAGATA+TGG 0.351899 1_3:-71166272 None:intergenic
CCAACCTCTACTCAGGAGTT+TGG 0.352731 1_3:+71165343 Msa0138330:CDS
AACATAGCCAAGCTCCTCTT+TGG 0.353103 1_3:-71166215 None:intergenic
TGTTCTTGCGAAGATTTGCC+AGG 0.358392 1_3:+71165409 Msa0138330:CDS
GGGTTAAATCACTCGTTTGT+AGG 0.361474 1_3:+71162237 Msa0138330:five_prime_UTR
CCTTTCAACATCCTCTTTGC+GGG 0.365866 1_3:-71164096 None:intergenic
GTTCGTCCAGCTGCAATCTA+TGG 0.369457 1_3:+71165003 Msa0138330:CDS
GGATCAACGTGGCTATCAAT+TGG 0.376273 1_3:-71164344 None:intergenic
ACAAATAGGCTAAACTGTTA+TGG 0.378081 1_3:+71166898 Msa0138330:three_prime_UTR
ACAAAATAGCCAAGTATAGA+TGG 0.384180 1_3:-71166320 None:intergenic
TCATCGTGGTTGTAACAAAT+AGG 0.389491 1_3:+71166884 Msa0138330:three_prime_UTR
TGGATTCTACCATATCTTAC+TGG 0.392214 1_3:+71166263 Msa0138330:CDS
ACCTCCGCCAATCTTCTCCT+TGG 0.396991 1_3:+71163814 Msa0138330:CDS
TAGATCAGGTAGATCTAGTA+AGG 0.399237 1_3:+71162262 Msa0138330:five_prime_UTR
GTTGATGAAGTCAATATAAA+CGG 0.405097 1_3:+71164197 Msa0138330:CDS
TATTGGGTTGTAAAGCTTGT+TGG 0.406561 1_3:+71162193 Msa0138330:five_prime_UTR
CTTGCCATGGTTATGATCCT+TGG 0.407037 1_3:-71165048 None:intergenic
TATTCCACGTTGCTGCCTTT+GGG 0.407479 1_3:+71164141 Msa0138330:CDS
GGTCTGCTTCTGTTCAGAAT+TGG 0.410622 1_3:+71165075 Msa0138330:CDS
CCCTTTCAACATCCTCTTTG+CGG 0.413090 1_3:-71164097 None:intergenic
CATAAGAAGAGGTGCTCAAC+AGG 0.414942 1_3:+71163779 Msa0138330:CDS
TGCTGGTTTCCTTCCAGACA+TGG 0.418434 1_3:+71166369 Msa0138330:CDS
ATTGATTTACTGCGGCTGTA+TGG 0.427968 1_3:-71164365 None:intergenic
ACAACCTATAGCTGCTGGCC+AGG 0.434917 1_3:+71165200 Msa0138330:CDS
ACAAAACTGTAAAGTCAGAT+TGG 0.435185 1_3:+71165100 Msa0138330:CDS
GGCCATTTATGCTTGGTACC+TGG 0.438421 1_3:+71166492 Msa0138330:CDS
ATAAGAAATAAATTCTTACT+TGG 0.450901 1_3:-71162173 None:intergenic
GTTGCTGCCTTTGGGATGTC+AGG 0.451234 1_3:+71164149 Msa0138330:CDS
TATGCCTGGCCAGCAGCTAT+AGG 0.454636 1_3:-71165204 None:intergenic
AGAAACATAATCCCCATGTC+TGG 0.455167 1_3:-71166382 None:intergenic
GCATTGACCTTGGTATCAAA+AGG 0.456468 1_3:+71164243 Msa0138330:CDS
TTCGTAGTGACCGGTGGACT+TGG 0.456621 1_3:+71163726 Msa0138330:CDS
ACAAGTGTATAGATGATTCC+TGG 0.458369 1_3:-71164977 None:intergenic
GGAAAAGAGATGCTGCAATT+TGG 0.461139 1_3:+71164170 Msa0138330:CDS
TCCAGCTGCAATCTATGGAC+CGG 0.461971 1_3:+71165008 Msa0138330:CDS
TGCTTGGTACCTGGCTAAAA+GGG 0.463955 1_3:+71166501 Msa0138330:CDS
CAAAACTGTAAAGTCAGATT+GGG 0.467206 1_3:+71165101 Msa0138330:CDS
GATCAACGTGGCTATCAATT+GGG 0.469429 1_3:-71164343 None:intergenic
CCAGCTGCAATCTATGGACC+GGG 0.472395 1_3:+71165009 Msa0138330:CDS
CTTACTGGAAACAGAGGAAA+AGG 0.472903 1_3:+71166278 Msa0138330:CDS
CGTAGGATCTGCTCTCTGCT+TGG 0.474320 1_3:+71163752 Msa0138330:CDS
CCCGGTCCATAGATTGCAGC+TGG 0.483393 1_3:-71165009 None:intergenic
GGATAATCTCACAGGATTGT+GGG 0.483829 1_3:+71162446 Msa0138330:five_prime_UTR
ACTGATAAATTTATATAAGC+GGG 0.484241 1_3:-71166758 None:intergenic
TTGATGAAGTCAATATAAAC+GGG 0.485210 1_3:+71164198 Msa0138330:CDS
TGGCTATCAATTGGGAAATA+CGG 0.489778 1_3:-71164335 None:intergenic
CAAGTTGCCATGAAATTGAC+GGG 0.490799 1_3:-71166717 None:intergenic
GCTGGTTTCCTTCCAGACAT+GGG 0.490842 1_3:+71166370 Msa0138330:CDS
CTCTTATCTTAAAGCCAAAG+AGG 0.491886 1_3:+71166201 Msa0138330:CDS
GGTGACCTCGCGAGAGGGGA+TGG 0.492051 1_3:+71166243 Msa0138330:CDS
AACCAGCCTCTTGCATTGAC+AGG 0.492417 1_3:-71166529 None:intergenic
AGCGAGAATGAAGGAATTGA+GGG 0.492669 1_3:+71163696 Msa0138330:CDS
GGTTAAATCACTCGTTTGTA+GGG 0.493207 1_3:+71162238 Msa0138330:five_prime_UTR
GAGCGAGAATGAAGGAATTG+AGG 0.495495 1_3:+71163695 Msa0138330:CDS
ATCCATTGCTTAATCGGTGG+TGG 0.498612 1_3:+71165450 Msa0138330:CDS
ATGACCTCACTATTCTGTGC+TGG 0.499888 1_3:+71166352 Msa0138330:CDS
AGGAAAAGGCAAACTCTGGA+TGG 0.500259 1_3:+71166292 Msa0138330:CDS
CTTAAAGCCAAAGAGGAGCT+TGG 0.500437 1_3:+71166208 Msa0138330:CDS
TAAATCAATTGCTGAACAGT+TGG 0.500574 1_3:+71164379 Msa0138330:CDS
GTCTCATCTTCTTAAACTCA+AGG 0.500577 1_3:+71163836 Msa0138330:CDS
TGGATAATCTCACAGGATTG+TGG 0.503281 1_3:+71162445 Msa0138330:five_prime_UTR
ATCATAACCATGGCAAGGTT+AGG 0.504342 1_3:+71165054 Msa0138330:CDS
GATGAGACCAAGGAGAAGAT+TGG 0.505513 1_3:-71163821 None:intergenic
ATTAACTATGGTACAAGAGA+AGG 0.506695 1_3:-71166653 None:intergenic
ACATACAATGTTGTCTTTGG+CGG 0.510858 1_3:+71164281 Msa0138330:CDS
AAGGGAGTCAACTGCATACA+AGG 0.513890 1_3:+71163855 Msa0138330:CDS
CTGGTTTCCTTCCAGACATG+GGG 0.514031 1_3:+71166371 Msa0138330:CDS
CCCTCTCGCGAGGTCACCAT+GGG 0.515373 1_3:-71166238 None:intergenic
TATCCTGGTTCACTCAATAT+GGG 0.516828 1_3:-71162480 None:intergenic
CCCATGGTGACCTCGCGAGA+GGG 0.517537 1_3:+71166238 Msa0138330:CDS
GGAAGGAGGATGAATGGTTG+AGG 0.518907 1_3:-71165476 None:intergenic
ACAAGTTGCCATGAAATTGA+CGG 0.521022 1_3:-71166718 None:intergenic
CTCGTTTGTAGGGATAGATC+AGG 0.521544 1_3:+71162248 Msa0138330:five_prime_UTR
AGGAATTCAAAAGAATTGAC+AGG 0.521858 1_3:-71165320 None:intergenic
GGAAGGTGCCTGTCTTCCCC+CGG 0.522402 1_3:-71165027 None:intergenic
CACTGATAAATTTATATAAG+CGG 0.528305 1_3:-71166759 None:intergenic
CGCTTATATAAATTTATCAG+TGG 0.535005 1_3:+71166760 Msa0138330:three_prime_UTR
ACAGAGGAAAAGGCAAACTC+TGG 0.535279 1_3:+71166288 Msa0138330:CDS
TCATTGAGGCCATTTATGCT+TGG 0.535862 1_3:+71166485 Msa0138330:CDS
ATCACACACAAGAAATATCC+TGG 0.538725 1_3:-71162495 None:intergenic
GGGAAGACAGGCACCTTCCA+AGG 0.539203 1_3:+71165031 Msa0138330:CDS
CCAAACTCCTGAGTAGAGGT+TGG 0.541259 1_3:-71165343 None:intergenic
GAAGGAGGATGAATGGTTGA+GGG 0.545516 1_3:-71165475 None:intergenic
GGAAAACAACCTATAGCTGC+TGG 0.546273 1_3:+71165195 Msa0138330:CDS
CCGCAAAGAGGATGTTGAAA+GGG 0.547619 1_3:+71164097 Msa0138330:CDS
AATTCCTCCAACCTCTACTC+AGG 0.549595 1_3:+71165336 Msa0138330:CDS
AGAAGATTGGCGGAGGTCAA+AGG 0.550159 1_3:-71163808 None:intergenic
CCTTCCGAGTGAAGCACTCA+AGG 0.550376 1_3:+71165493 Msa0138330:CDS
GGGAAGAGCTTCGTAGTGAC+CGG 0.553565 1_3:+71163717 Msa0138330:CDS
ATGGGCCTACCATCTATACT+TGG 0.554667 1_3:+71166311 Msa0138330:CDS
TCCTCTCAAGAAATGACACC+AGG 0.555886 1_3:+71164959 Msa0138330:intron
TCACTCGGAAGGAGGATGAA+TGG 0.556863 1_3:-71165482 None:intergenic
CGTCACATATAAAGTATGCC+TGG 0.561518 1_3:-71165218 None:intergenic
AACTCCTGAGTAGAGGTTGG+AGG 0.562335 1_3:-71165340 None:intergenic
TACCTAGTGGATAATCTCAC+AGG 0.563221 1_3:+71162438 Msa0138330:five_prime_UTR
TCTCACAGGATTGTGGGGAC+TGG 0.563480 1_3:+71162452 Msa0138330:five_prime_UTR
ATCCTGTCAATGCAAGAGGC+TGG 0.564149 1_3:+71166527 Msa0138330:CDS
GGAAAAGGCAAACTCTGGAT+GGG 0.565206 1_3:+71166293 Msa0138330:CDS
AGTTTAAGAAGATGAGACCA+AGG 0.565484 1_3:-71163831 None:intergenic
CCCCTCTCGCGAGGTCACCA+TGG 0.565665 1_3:-71166239 None:intergenic
ATCAATGTGGATGACAAGGC+TGG 0.566125 1_3:+71166435 Msa0138330:CDS
CCATTATAAGAGCAAGGACA+AGG 0.568547 1_3:-71165137 None:intergenic
CTCGACGCTTGCATTGACCT+TGG 0.569050 1_3:+71164233 Msa0138330:CDS
AAGATCAATCGAATCTAGCA+AGG 0.569465 1_3:+71162347 Msa0138330:five_prime_UTR
CCTTGAGTGCTTCACTCGGA+AGG 0.569790 1_3:-71165493 None:intergenic
AGAAGACAAAAGAGGAGTTG+TGG 0.575892 1_3:+71162395 Msa0138330:five_prime_UTR
ATGCACTTGAGCGAGAATGA+AGG 0.578625 1_3:+71163687 Msa0138330:CDS
AAGTAATTACTTGAGAGTGC+GGG 0.579690 1_3:-71164417 None:intergenic
ACATAATCCCCATGTCTGGA+AGG 0.580589 1_3:-71166378 None:intergenic
CCATGGTTATGATCCTTGGA+AGG 0.586083 1_3:-71165044 None:intergenic
CCCGCAAAGAGGATGTTGAA+AGG 0.586354 1_3:+71164096 Msa0138330:CDS
ACCAAGGAGAAGATTGGCGG+AGG 0.587768 1_3:-71163815 None:intergenic
AACAGCTGTGCACGTCATTG+AGG 0.591255 1_3:+71166471 Msa0138330:CDS
GCTCTTATAATGGCAAGTAT+GGG 0.591720 1_3:+71165147 Msa0138330:CDS
TCTCATCTTCTTAAACTCAA+GGG 0.592691 1_3:+71163837 Msa0138330:CDS
GATCCGCATGCAAATAACAT+TGG 0.594778 1_3:+71163630 Msa0138330:intron
CCATGGTGACCTCGCGAGAG+GGG 0.596607 1_3:+71166239 Msa0138330:CDS
GTTCTTGCGAAGATTTGCCA+GGG 0.600523 1_3:+71165410 Msa0138330:CDS
AAAGTAATTACTTGAGAGTG+CGG 0.601225 1_3:-71164418 None:intergenic
TTGGATGACAACAATGACAA+AGG 0.604527 1_3:+71165174 Msa0138330:CDS
CAGGCATACTTTATATGTGA+CGG 0.606262 1_3:+71165219 Msa0138330:CDS
GTGGATCCTGTCAATGCAAG+AGG 0.606665 1_3:+71166523 Msa0138330:CDS
TTCGATCAATGTGGATGACA+AGG 0.608447 1_3:+71166431 Msa0138330:CDS
TCCCATGGTGACCTCGCGAG+AGG 0.608515 1_3:+71166237 Msa0138330:CDS
AATAGCCAAGTATAGATGGT+AGG 0.609337 1_3:-71166316 None:intergenic
GAGACCAAGGAGAAGATTGG+CGG 0.611013 1_3:-71163818 None:intergenic
GGAGCTTGGCTATGTTCCCA+TGG 0.613476 1_3:+71166222 Msa0138330:CDS
TATATCCATTGCTTAATCGG+TGG 0.615536 1_3:+71165447 Msa0138330:CDS
TTAACTATGGTACAAGAGAA+GGG 0.617968 1_3:-71166652 None:intergenic
AGGGGATGTTACCCGCAAAG+AGG 0.619247 1_3:+71164085 Msa0138330:intron
AGCCACCACCGATTAAGCAA+TGG 0.619657 1_3:-71165452 None:intergenic
TGCTTGGAACTCATAAGAAG+AGG 0.621762 1_3:+71163768 Msa0138330:CDS
TCGCCAATGTTATTTGCATG+CGG 0.624249 1_3:-71163633 None:intergenic
TACTTGCCATTATAAGAGCA+AGG 0.625284 1_3:-71165143 None:intergenic
TAACCCATATTGAGTGAACC+AGG 0.628023 1_3:+71162477 Msa0138330:five_prime_UTR
TCCTACGAATCCAAGTCCAC+CGG 0.628700 1_3:-71163736 None:intergenic
CTGACCTTGAGTGCTTCACT+CGG 0.629307 1_3:-71165497 None:intergenic
ACCGGTGGACTTGGATTCGT+AGG 0.633076 1_3:+71163735 Msa0138330:CDS
TAATCCAAACTCCTGAGTAG+AGG 0.633324 1_3:-71165347 None:intergenic
GATAATCTCACAGGATTGTG+GGG 0.636241 1_3:+71162447 Msa0138330:five_prime_UTR
TATTCGTCTTTCGATCAATG+TGG 0.638850 1_3:+71166422 Msa0138330:CDS
GCGAGAATGAAGGAATTGAG+GGG 0.639547 1_3:+71163697 Msa0138330:CDS
TGAGTGCTTCACTCGGAAGG+AGG 0.639775 1_3:-71165490 None:intergenic
CAAGGATCATAACCATGGCA+AGG 0.642139 1_3:+71165049 Msa0138330:CDS
AAGAGCTTCGTAGTGACCGG+TGG 0.642476 1_3:+71163720 Msa0138330:CDS
ATCCTGTGAGATTATCCACT+AGG 0.642774 1_3:-71162440 None:intergenic
AGAATCCATCCCCTCTCGCG+AGG 0.645963 1_3:-71166248 None:intergenic
AGCTGCAATCTATGGACCGG+GGG 0.646902 1_3:+71165011 Msa0138330:CDS
TACTTAACACAACTACCTAG+TGG 0.649031 1_3:+71162425 Msa0138330:five_prime_UTR
CCATATCTTACTGGAAACAG+AGG 0.649984 1_3:+71166272 Msa0138330:CDS
GTTCAGCAATTGATTTACTG+CGG 0.652817 1_3:-71164373 None:intergenic
AGATCAATCGAATCTAGCAA+GGG 0.656933 1_3:+71162348 Msa0138330:five_prime_UTR
AAGCAGACCTAACCTTGCCA+TGG 0.659973 1_3:-71165061 None:intergenic
TTGGTACCTGGCTAAAAGGG+TGG 0.669560 1_3:+71166504 Msa0138330:CDS
AGATCAGGTAGATCTAGTAA+GGG 0.673973 1_3:+71162263 Msa0138330:five_prime_UTR
CAGCTGCAATCTATGGACCG+GGG 0.674195 1_3:+71165010 Msa0138330:CDS
CCTTCCAAGGATCATAACCA+TGG 0.677179 1_3:+71165044 Msa0138330:CDS
ATAAGATCGTATAAACACCC+TGG 0.697047 1_3:-71165427 None:intergenic
GAAACCAGCACAGAATAGTG+AGG 0.708076 1_3:-71166356 None:intergenic
GGAATACGCAGTCAGCACCA+CGG 0.736062 1_3:-71164124 None:intergenic
ACATCCCAAAGGCAGCAACG+TGG 0.737370 1_3:-71164145 None:intergenic
GATGTTGAAAGGGTACTCCG+TGG 0.759909 1_3:+71164107 Msa0138330:CDS
TGCGGCTGTATGGATCAACG+TGG 0.844770 1_3:-71164355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTATGTTAATTAATAAAA+AGG - chr1_3:71162572-71162591 None:intergenic 10.0%
!!! AAGTTTGATTTTATTTTATA+GGG - chr1_3:71163358-71163377 None:intergenic 10.0%
!!! AAAGTTTGATTTTATTTTAT+AGG - chr1_3:71163359-71163378 None:intergenic 10.0%
!! CATATAATTCATATTATTAA+CGG - chr1_3:71163982-71164001 None:intergenic 10.0%
!!! ACTCAATTTTATTTGATATT+TGG + chr1_3:71162149-71162168 Msa0138330:five_prime_UTR 15.0%
!! ATAAGAAATAAATTCTTACT+TGG - chr1_3:71162176-71162195 None:intergenic 15.0%
!!! AGTAAGAATTTATTTCTTAT+TGG + chr1_3:71162176-71162195 Msa0138330:five_prime_UTR 15.0%
!!! GTAAGAATTTATTTCTTATT+GGG + chr1_3:71162177-71162196 Msa0138330:five_prime_UTR 15.0%
!! ATTATATATATACTTGGATT+AGG - chr1_3:71162596-71162615 None:intergenic 15.0%
!! TTCTCAATTATATATATACT+TGG - chr1_3:71162602-71162621 None:intergenic 15.0%
!!! TAAAATATTTTCACAAGAAA+GGG - chr1_3:71162656-71162675 None:intergenic 15.0%
!! CGAAACAAAAAAAAAAAAAA+GGG - chr1_3:71163175-71163194 None:intergenic 15.0%
!! TCGAAACAAAAAAAAAAAAA+AGG - chr1_3:71163176-71163195 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG + chr1_3:71163514-71163533 Msa0138330:intron 15.0%
!! AAAATAAATTTGGTCAAAAT+GGG - chr1_3:71163601-71163620 None:intergenic 15.0%
!!! CTTTAAGAACAAAATAAATT+TGG - chr1_3:71163611-71163630 None:intergenic 15.0%
!! TTTCTATATTTCATACAAAT+TGG + chr1_3:71164866-71164885 Msa0138330:intron 15.0%
!! GATCAAATTAAACAATTAAA+AGG - chr1_3:71165712-71165731 None:intergenic 15.0%
!! AGACAAAAATAAAAGAGATA+GGG - chr1_3:71162529-71162548 None:intergenic 20.0%
!!! TTGAGAAGATTTTTATATAC+AGG + chr1_3:71162615-71162634 Msa0138330:intron 20.0%
!!! AAAATATTTTCACAAGAAAG+GGG - chr1_3:71162655-71162674 None:intergenic 20.0%
!!! GTAAAATATTTTCACAAGAA+AGG - chr1_3:71162657-71162676 None:intergenic 20.0%
!! AAAAACACAAACATAATATG+TGG - chr1_3:71162843-71162862 None:intergenic 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr1_3:71163327-71163346 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr1_3:71163328-71163347 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG + chr1_3:71163423-71163442 Msa0138330:intron 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG + chr1_3:71163424-71163443 Msa0138330:intron 20.0%
!!! TACTGATGGAAAATTTTATA+AGG + chr1_3:71163455-71163474 Msa0138330:intron 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr1_3:71163483-71163502 Msa0138330:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr1_3:71163484-71163503 Msa0138330:intron 20.0%
!!! TTTTGGGTTAATTAAGTAAA+TGG - chr1_3:71163542-71163561 None:intergenic 20.0%
!! CAAAATAAATTTGGTCAAAA+TGG - chr1_3:71163602-71163621 None:intergenic 20.0%
!! GAATGAAATAAAGAAATGAA+AGG - chr1_3:71163883-71163902 None:intergenic 20.0%
!!! TTCTTTATTTCATTCCATTT+CGG + chr1_3:71163888-71163907 Msa0138330:intron 20.0%
!!! TCTCTGTTAATTTTGTTTAA+GGG + chr1_3:71164066-71164085 Msa0138330:intron 20.0%
!! ATCAAAGTGAAATTAAAATG+TGG + chr1_3:71164650-71164669 Msa0138330:intron 20.0%
!! TCAAAGTGAAATTAAAATGT+GGG + chr1_3:71164651-71164670 Msa0138330:intron 20.0%
!! GATACATTAAATACAAAAAC+TGG - chr1_3:71165734-71165753 None:intergenic 20.0%
!!! AATGACATGCTTTTAAAATT+AGG + chr1_3:71165787-71165806 Msa0138330:intron 20.0%
!!! AAAAATTTTATTAGGCTTTC+AGG - chr1_3:71165905-71165924 None:intergenic 20.0%
!! TCATTTCTTAACATTAACTA+TGG - chr1_3:71166668-71166687 None:intergenic 20.0%
!! ACTGATAAATTTATATAAGC+GGG - chr1_3:71166761-71166780 None:intergenic 20.0%
!! CACTGATAAATTTATATAAG+CGG - chr1_3:71166762-71166781 None:intergenic 20.0%
!!! TTTTTAGGAAAAAACATGTA+AGG - chr1_3:71166854-71166873 None:intergenic 20.0%
!!! AAAATGTAATTCCCAATTTT+TGG + chr1_3:71166949-71166968 Msa0138330:three_prime_UTR 20.0%
! TAACAAGTGTGTAAAAAACA+AGG + chr1_3:71162216-71162235 Msa0138330:five_prime_UTR 25.0%
! AACAAGTGTGTAAAAAACAA+GGG + chr1_3:71162217-71162236 Msa0138330:five_prime_UTR 25.0%
!!! ATTTGTACTCGTTTGTTTTT+TGG + chr1_3:71162288-71162307 Msa0138330:five_prime_UTR 25.0%
!!! TTTTTTGGTTGTAAAAGCAA+AGG + chr1_3:71162303-71162322 Msa0138330:five_prime_UTR 25.0%
! GAGACAAAAATAAAAGAGAT+AGG - chr1_3:71162530-71162549 None:intergenic 25.0%
!! AAATATTTTCACAAGAAAGG+GGG - chr1_3:71162654-71162673 None:intergenic 25.0%
!!! TTGTGTTTTTAACACATTAC+AGG + chr1_3:71162853-71162872 Msa0138330:intron 25.0%
!! AACAATTTTCTTCTTCTTCT+AGG + chr1_3:71163068-71163087 Msa0138330:intron 25.0%
! AAAAAAAAAAAAAGGGAGAC+AGG - chr1_3:71163168-71163187 None:intergenic 25.0%
! ACACAACACTAAAAAAACAA+GGG + chr1_3:71163284-71163303 Msa0138330:intron 25.0%
! TAAACAAAATTAACAGAGAC+AGG - chr1_3:71164065-71164084 None:intergenic 25.0%
!!! GTCTCTGTTAATTTTGTTTA+AGG + chr1_3:71164065-71164084 Msa0138330:intron 25.0%
!!! CTCTGTTAATTTTGTTTAAG+GGG + chr1_3:71164067-71164086 Msa0138330:intron 25.0%
!! GTTGATGAAGTCAATATAAA+CGG + chr1_3:71164197-71164216 Msa0138330:CDS 25.0%
! TTGATGAAGTCAATATAAAC+GGG + chr1_3:71164198-71164217 Msa0138330:CDS 25.0%
! AAAAATACTTAACGGAAATG+AGG + chr1_3:71164307-71164326 Msa0138330:CDS 25.0%
! TCTATGCTCTATCAAAATTA+AGG + chr1_3:71164459-71164478 Msa0138330:intron 25.0%
! TATCATTCTCTACAAAAACT+TGG - chr1_3:71164527-71164546 None:intergenic 25.0%
! TGATATTTACAGTCATACTT+AGG + chr1_3:71164789-71164808 Msa0138330:intron 25.0%
!! TCAAGAGTTAAAGATCTTTT+TGG - chr1_3:71165380-71165399 None:intergenic 25.0%
! TCTTATATCCATTGCTTAAT+CGG + chr1_3:71165444-71165463 Msa0138330:CDS 25.0%
! TGCTTGAAATAAATAAACAC+CGG + chr1_3:71166022-71166041 Msa0138330:intron 25.0%
! CGCTTATATAAATTTATCAG+TGG + chr1_3:71166760-71166779 Msa0138330:three_prime_UTR 25.0%
!!! GATGAGTTCATTCTTTTTTT+AGG - chr1_3:71166869-71166888 None:intergenic 25.0%
!!! TCTTTAAAGCTCCAAAAATT+GGG - chr1_3:71166963-71166982 None:intergenic 25.0%
!!! ATCTTTAAAGCTCCAAAAAT+TGG - chr1_3:71166964-71166983 None:intergenic 25.0%
GCTTTGCTTTCTCAAAAATT+CGG - chr1_3:71162031-71162050 None:intergenic 30.0%
GTGTAAAAAGAAGACAAAAG+AGG + chr1_3:71162387-71162406 Msa0138330:five_prime_UTR 30.0%
! AATATTTTCACAAGAAAGGG+GGG - chr1_3:71162653-71162672 None:intergenic 30.0%
GACACAACACTAAAAAAACA+AGG + chr1_3:71163283-71163302 Msa0138330:intron 30.0%
! ACACTTTCCTTAAGCATTTT+AGG + chr1_3:71163391-71163410 Msa0138330:intron 30.0%
! CACTTTCCTTAAGCATTTTA+GGG + chr1_3:71163392-71163411 Msa0138330:intron 30.0%
TTTAGTCCCTAAAATGCTTA+AGG - chr1_3:71163401-71163420 None:intergenic 30.0%
TTAGGGACTAAAAATGTTGA+TGG + chr1_3:71163409-71163428 Msa0138330:intron 30.0%
ATAGGGACTAAAAATACTGA+TGG + chr1_3:71163441-71163460 Msa0138330:intron 30.0%
TCTCATCTTCTTAAACTCAA+GGG + chr1_3:71163837-71163856 Msa0138330:CDS 30.0%
TAAATCAATTGCTGAACAGT+TGG + chr1_3:71164379-71164398 Msa0138330:CDS 30.0%
AAAGTAATTACTTGAGAGTG+CGG - chr1_3:71164421-71164440 None:intergenic 30.0%
ATCAAAATTAAGGCTCTCTT+TGG + chr1_3:71164469-71164488 Msa0138330:intron 30.0%
AATGCTTACTCTTTCTTAAG+AGG - chr1_3:71164627-71164646 None:intergenic 30.0%
GAAATTAAAATGTGGGATAC+AGG + chr1_3:71164658-71164677 Msa0138330:intron 30.0%
GAAAAGAAGAACTAGAAACA+TGG - chr1_3:71164731-71164750 None:intergenic 30.0%
!!! GTTTCTAGTTCTTCTTTTCA+TGG + chr1_3:71164732-71164751 Msa0138330:intron 30.0%
ATTTCTTGAGAGGATGAAAA+AGG - chr1_3:71164953-71164972 None:intergenic 30.0%
ACAAAACTGTAAAGTCAGAT+TGG + chr1_3:71165100-71165119 Msa0138330:CDS 30.0%
CAAAACTGTAAAGTCAGATT+GGG + chr1_3:71165101-71165120 Msa0138330:CDS 30.0%
AGGAATTCAAAAGAATTGAC+AGG - chr1_3:71165323-71165342 None:intergenic 30.0%
ATAGTTGGAGACTTATATGT+AGG + chr1_3:71165547-71165566 Msa0138330:intron 30.0%
! AAAGTGCCTAACATATTTCT+AGG - chr1_3:71165573-71165592 None:intergenic 30.0%
AAGACTTTCAATGATCTCTT+TGG + chr1_3:71165593-71165612 Msa0138330:intron 30.0%
! ACTTTTGTTCTTGCATCTTT+TGG + chr1_3:71165666-71165685 Msa0138330:intron 30.0%
TACATATAGCTTAAGCTCAA+TGG + chr1_3:71165764-71165783 Msa0138330:intron 30.0%
CAAGACGATAAGAAATTAGA+AGG - chr1_3:71165845-71165864 None:intergenic 30.0%
TAATTTCTTATCGTCTTGAG+AGG + chr1_3:71165847-71165866 Msa0138330:intron 30.0%
AATAAACACCGGAACATATA+TGG + chr1_3:71166033-71166052 Msa0138330:intron 30.0%
AAGGTAATCCATATATGTTC+CGG - chr1_3:71166044-71166063 None:intergenic 30.0%
TCTTGAATGCAGTTGTATAA+AGG - chr1_3:71166063-71166082 None:intergenic 30.0%
ACAAAATAGCCAAGTATAGA+TGG - chr1_3:71166323-71166342 None:intergenic 30.0%
! TTTTCTGTTGAAAAGAGCAA+GGG + chr1_3:71166588-71166607 Msa0138330:CDS 30.0%
TTAACTATGGTACAAGAGAA+GGG - chr1_3:71166655-71166674 None:intergenic 30.0%
ATTAACTATGGTACAAGAGA+AGG - chr1_3:71166656-71166675 None:intergenic 30.0%
AAAAAAGAATGAACTCATCG+TGG + chr1_3:71166870-71166889 Msa0138330:three_prime_UTR 30.0%
ACAAATAGGCTAAACTGTTA+TGG + chr1_3:71166898-71166917 Msa0138330:three_prime_UTR 30.0%
!!! AAGAGCGATTTTTAGTTCAC+TGG - chr1_3:71162099-71162118 None:intergenic 35.0%
! TATTGGGTTGTAAAGCTTGT+TGG + chr1_3:71162193-71162212 Msa0138330:five_prime_UTR 35.0%
GGTTAAATCACTCGTTTGTA+GGG + chr1_3:71162238-71162257 Msa0138330:five_prime_UTR 35.0%
TAGATCAGGTAGATCTAGTA+AGG + chr1_3:71162262-71162281 Msa0138330:five_prime_UTR 35.0%
AGATCAGGTAGATCTAGTAA+GGG + chr1_3:71162263-71162282 Msa0138330:five_prime_UTR 35.0%
AAGATCAATCGAATCTAGCA+AGG + chr1_3:71162347-71162366 Msa0138330:five_prime_UTR 35.0%
AGATCAATCGAATCTAGCAA+GGG + chr1_3:71162348-71162367 Msa0138330:five_prime_UTR 35.0%
TACTTAACACAACTACCTAG+TGG + chr1_3:71162425-71162444 Msa0138330:five_prime_UTR 35.0%
TATCCTGGTTCACTCAATAT+GGG - chr1_3:71162483-71162502 None:intergenic 35.0%
ATATCCTGGTTCACTCAATA+TGG - chr1_3:71162484-71162503 None:intergenic 35.0%
ATCACACACAAGAAATATCC+TGG - chr1_3:71162498-71162517 None:intergenic 35.0%
TTAACTGTCGAGGTTTATCT+CGG - chr1_3:71162691-71162710 None:intergenic 35.0%
!! AAAATGGCTTTGGTGAGAAT+TGG - chr1_3:71162799-71162818 None:intergenic 35.0%
TAAAAGACGTAAATGTCCCT+GGG - chr1_3:71163015-71163034 None:intergenic 35.0%
!! GCAGCAGCAACTTTTTATTT+GGG + chr1_3:71163115-71163134 Msa0138330:intron 35.0%
!! CAGCAGCAACTTTTTATTTG+GGG + chr1_3:71163116-71163135 Msa0138330:intron 35.0%
AGTTTAAGAAGATGAGACCA+AGG - chr1_3:71163834-71163853 None:intergenic 35.0%
GTCTCATCTTCTTAAACTCA+AGG + chr1_3:71163836-71163855 Msa0138330:CDS 35.0%
TAGTAAGATCAGATCCGAAA+TGG - chr1_3:71163905-71163924 None:intergenic 35.0%
AATACCTCTCATCAACAACA+GGG - chr1_3:71164025-71164044 None:intergenic 35.0%
AAATACCTCTCATCAACAAC+AGG - chr1_3:71164026-71164045 None:intergenic 35.0%
! AAACAAGCCTTTTGATACCA+AGG - chr1_3:71164253-71164272 None:intergenic 35.0%
AGCACATACAATGTTGTCTT+TGG + chr1_3:71164278-71164297 Msa0138330:CDS 35.0%
ACATACAATGTTGTCTTTGG+CGG + chr1_3:71164281-71164300 Msa0138330:CDS 35.0%
GGCGGTCAAAAAATACTTAA+CGG + chr1_3:71164299-71164318 Msa0138330:CDS 35.0%
TGGCTATCAATTGGGAAATA+CGG - chr1_3:71164338-71164357 None:intergenic 35.0%
! GTTCAGCAATTGATTTACTG+CGG - chr1_3:71164376-71164395 None:intergenic 35.0%
! AAGTAATTACTTGAGAGTGC+GGG - chr1_3:71164420-71164439 None:intergenic 35.0%
ATTAAAATGTGGGATACAGG+TGG + chr1_3:71164661-71164680 Msa0138330:intron 35.0%
! AGTTCTTCTTTTCATGGACA+AGG + chr1_3:71164738-71164757 Msa0138330:intron 35.0%
TTGAGAGGATGAAAAAGGTT+AGG - chr1_3:71164948-71164967 None:intergenic 35.0%
ACAAGTGTATAGATGATTCC+TGG - chr1_3:71164980-71164999 None:intergenic 35.0%
TACTTGCCATTATAAGAGCA+AGG - chr1_3:71165146-71165165 None:intergenic 35.0%
TGCTCTTATAATGGCAAGTA+TGG + chr1_3:71165146-71165165 Msa0138330:CDS 35.0%
GCTCTTATAATGGCAAGTAT+GGG + chr1_3:71165147-71165166 Msa0138330:CDS 35.0%
TTGGATGACAACAATGACAA+AGG + chr1_3:71165174-71165193 Msa0138330:CDS 35.0%
CAGGCATACTTTATATGTGA+CGG + chr1_3:71165219-71165238 Msa0138330:CDS 35.0%
TACTTTATATGTGACGGTGA+TGG + chr1_3:71165225-71165244 Msa0138330:intron 35.0%
ATAAGATCGTATAAACACCC+TGG - chr1_3:71165430-71165449 None:intergenic 35.0%
TATATCCATTGCTTAATCGG+TGG + chr1_3:71165447-71165466 Msa0138330:CDS 35.0%
ATTCTACCTGACTGAATAGT+TGG + chr1_3:71165532-71165551 Msa0138330:intron 35.0%
TGTAGGCCTAGAAATATGTT+AGG + chr1_3:71165564-71165583 Msa0138330:intron 35.0%
CCTTACTTGAAAAAGACAGT+AGG - chr1_3:71165877-71165896 None:intergenic 35.0%
!!! CCTACTGTCTTTTTCAAGTA+AGG + chr1_3:71165874-71165893 Msa0138330:intron 35.0%
! TCAAGCATACAAGTTGAGAA+GGG - chr1_3:71166009-71166028 None:intergenic 35.0%
! TTCAAGCATACAAGTTGAGA+AGG - chr1_3:71166010-71166029 None:intergenic 35.0%
TAAAGGGGTTCGAACATAAA+AGG - chr1_3:71166094-71166113 None:intergenic 35.0%
TCCTTGCATTCTCATCTAAA+GGG - chr1_3:71166110-71166129 None:intergenic 35.0%
ATGCATGTTTGATATTCGAC+AGG + chr1_3:71166159-71166178 Msa0138330:intron 35.0%
ATGTTTGATATTCGACAGGT+GGG + chr1_3:71166163-71166182 Msa0138330:intron 35.0%
CTCTTATCTTAAAGCCAAAG+AGG + chr1_3:71166201-71166220 Msa0138330:CDS 35.0%
TGGATTCTACCATATCTTAC+TGG + chr1_3:71166263-71166282 Msa0138330:CDS 35.0%
AATAGCCAAGTATAGATGGT+AGG - chr1_3:71166319-71166338 None:intergenic 35.0%
TATTCGTCTTTCGATCAATG+TGG + chr1_3:71166422-71166441 Msa0138330:CDS 35.0%
! TTTTGGCAAACATTTGCTCT+GGG + chr1_3:71166550-71166569 Msa0138330:CDS 35.0%
! GTTTTCTGTTGAAAAGAGCA+AGG + chr1_3:71166587-71166606 Msa0138330:CDS 35.0%
ACAAGTTGCCATGAAATTGA+CGG - chr1_3:71166721-71166740 None:intergenic 35.0%
TCATCGTGGTTGTAACAAAT+AGG + chr1_3:71166884-71166903 Msa0138330:three_prime_UTR 35.0%
GGGTTAAATCACTCGTTTGT+AGG + chr1_3:71162237-71162256 Msa0138330:five_prime_UTR 40.0%
AGGTAGATTTACTCGTTTGC+AGG + chr1_3:71162323-71162342 Msa0138330:five_prime_UTR 40.0%
AGAAGACAAAAGAGGAGTTG+TGG + chr1_3:71162395-71162414 Msa0138330:five_prime_UTR 40.0%
! TACCTAGTGGATAATCTCAC+AGG + chr1_3:71162438-71162457 Msa0138330:five_prime_UTR 40.0%
ATCCTGTGAGATTATCCACT+AGG - chr1_3:71162443-71162462 None:intergenic 40.0%
TGGATAATCTCACAGGATTG+TGG + chr1_3:71162445-71162464 Msa0138330:five_prime_UTR 40.0%
GGATAATCTCACAGGATTGT+GGG + chr1_3:71162446-71162465 Msa0138330:five_prime_UTR 40.0%
GATAATCTCACAGGATTGTG+GGG + chr1_3:71162447-71162466 Msa0138330:five_prime_UTR 40.0%
TAACCCATATTGAGTGAACC+AGG + chr1_3:71162477-71162496 Msa0138330:five_prime_UTR 40.0%
GAGAGAGTTTGAGAGAAGTT+GGG - chr1_3:71162777-71162796 None:intergenic 40.0%
TTGCTTGCAATTCGCGAAAA+TGG - chr1_3:71162815-71162834 None:intergenic 40.0%
CTGTCGAGGAAAAATGAAAC+CGG - chr1_3:71162985-71163004 None:intergenic 40.0%
GTAAAAGACGTAAATGTCCC+TGG - chr1_3:71163016-71163035 None:intergenic 40.0%
! CGCAGCAGCAACTTTTTATT+TGG + chr1_3:71163114-71163133 Msa0138330:intron 40.0%
!! TGCTTAAGGAAAGTGTCACA+GGG - chr1_3:71163387-71163406 None:intergenic 40.0%
!! ATGCTTAAGGAAAGTGTCAC+AGG - chr1_3:71163388-71163407 None:intergenic 40.0%
GATCCGCATGCAAATAACAT+TGG + chr1_3:71163630-71163649 Msa0138330:intron 40.0%
! TCGCCAATGTTATTTGCATG+CGG - chr1_3:71163636-71163655 None:intergenic 40.0%
AGCGAGAATGAAGGAATTGA+GGG + chr1_3:71163696-71163715 Msa0138330:CDS 40.0%
TGCTTGGAACTCATAAGAAG+AGG + chr1_3:71163768-71163787 Msa0138330:CDS 40.0%
TGTTGATGTGTCAGTGTTCA+GGG - chr1_3:71163959-71163978 None:intergenic 40.0%
TATATGTCACCGACACATGT+TGG + chr1_3:71163996-71164015 Msa0138330:intron 40.0%
GGAAAAGAGATGCTGCAATT+TGG + chr1_3:71164170-71164189 Msa0138330:CDS 40.0%
! GCATTGACCTTGGTATCAAA+AGG + chr1_3:71164243-71164262 Msa0138330:CDS 40.0%
GATCAACGTGGCTATCAATT+GGG - chr1_3:71164346-71164365 None:intergenic 40.0%
! ATTGATTTACTGCGGCTGTA+TGG - chr1_3:71164368-71164387 None:intergenic 40.0%
TAAGGCTCTCTTTGGTTGTT+TGG + chr1_3:71164477-71164496 Msa0138330:intron 40.0%
GGATACAGGTGGAGATAAAT+GGG + chr1_3:71164672-71164691 Msa0138330:intron 40.0%
ATCATAACCATGGCAAGGTT+AGG + chr1_3:71165054-71165073 Msa0138330:CDS 40.0%
CCATTATAAGAGCAAGGACA+AGG - chr1_3:71165140-71165159 None:intergenic 40.0%
CCTTGTCCTTGCTCTTATAA+TGG + chr1_3:71165137-71165156 Msa0138330:CDS 40.0%
! AATGGCAAGTATGGGACTTT+TGG + chr1_3:71165155-71165174 Msa0138330:CDS 40.0%
CGTCACATATAAAGTATGCC+TGG - chr1_3:71165221-71165240 None:intergenic 40.0%
CTGAACAAAAGAAGAGTCAG+TGG - chr1_3:71165295-71165314 None:intergenic 40.0%
!!! CACTGACTCTTCTTTTGTTC+AGG + chr1_3:71165293-71165312 Msa0138330:intron 40.0%
TAATCCAAACTCCTGAGTAG+AGG - chr1_3:71165350-71165369 None:intergenic 40.0%
AAGTCTCCAACTATTCAGTC+AGG - chr1_3:71165541-71165560 None:intergenic 40.0%
CTTTGGACGATCATATCACA+TGG + chr1_3:71165610-71165629 Msa0138330:intron 40.0%
TGAGAAGGGCAAACAGATAA+GGG - chr1_3:71165995-71166014 None:intergenic 40.0%
TTGAGAAGGGCAAACAGATA+AGG - chr1_3:71165996-71166015 None:intergenic 40.0%
CCTTGCATTCTCATCTAAAG+GGG - chr1_3:71166109-71166128 None:intergenic 40.0%
CTCCTTGCATTCTCATCTAA+AGG - chr1_3:71166111-71166130 None:intergenic 40.0%
CATGTTTGATATTCGACAGG+TGG + chr1_3:71166162-71166181 Msa0138330:intron 40.0%
CCTCTGTTTCCAGTAAGATA+TGG - chr1_3:71166275-71166294 None:intergenic 40.0%
CCATATCTTACTGGAAACAG+AGG + chr1_3:71166272-71166291 Msa0138330:CDS 40.0%
CTTACTGGAAACAGAGGAAA+AGG + chr1_3:71166278-71166297 Msa0138330:CDS 40.0%
!! ACTTGGCTATTTTGTGTCGT+TGG + chr1_3:71166328-71166347 Msa0138330:CDS 40.0%
AGAAACATAATCCCCATGTC+TGG - chr1_3:71166385-71166404 None:intergenic 40.0%
TTCGATCAATGTGGATGACA+AGG + chr1_3:71166431-71166450 Msa0138330:CDS 40.0%
TCATTGAGGCCATTTATGCT+TGG + chr1_3:71166485-71166504 Msa0138330:CDS 40.0%
!! GTTTTGGCAAACATTTGCTC+TGG + chr1_3:71166549-71166568 Msa0138330:CDS 40.0%
TCTCTTTCCCGTCAATTTCA+TGG + chr1_3:71166710-71166729 Msa0138330:three_prime_UTR 40.0%
CAAGTTGCCATGAAATTGAC+GGG - chr1_3:71166720-71166739 None:intergenic 40.0%
CTCGTTTGTAGGGATAGATC+AGG + chr1_3:71162248-71162267 Msa0138330:five_prime_UTR 45.0%
GGAGAGAGTTTGAGAGAAGT+TGG - chr1_3:71162778-71162797 None:intergenic 45.0%
GCAATTCGCGAAAATGGCTT+TGG - chr1_3:71162809-71162828 None:intergenic 45.0%
TCTGCCTCTGCAATAACATC+AGG + chr1_3:71162892-71162911 Msa0138330:intron 45.0%
GCAATAACATCAGGACGCAT+CGG + chr1_3:71162901-71162920 Msa0138330:intron 45.0%
ACTACCAAGTTAACTGTCGC+CGG - chr1_3:71162953-71162972 None:intergenic 45.0%
! ACTTGGTAGTTAACTGCAGC+CGG + chr1_3:71162963-71162982 Msa0138330:intron 45.0%
! TTGCTGCTGCGTCAATTTTG+AGG - chr1_3:71163105-71163124 None:intergenic 45.0%
ATGCACTTGAGCGAGAATGA+AGG + chr1_3:71163687-71163706 Msa0138330:CDS 45.0%
GAGCGAGAATGAAGGAATTG+AGG + chr1_3:71163695-71163714 Msa0138330:CDS 45.0%
GCGAGAATGAAGGAATTGAG+GGG + chr1_3:71163697-71163716 Msa0138330:CDS 45.0%
!! CATAAGAAGAGGTGCTCAAC+AGG + chr1_3:71163779-71163798 Msa0138330:CDS 45.0%
GATGAGACCAAGGAGAAGAT+TGG - chr1_3:71163824-71163843 None:intergenic 45.0%
AAGGGAGTCAACTGCATACA+AGG + chr1_3:71163855-71163874 Msa0138330:CDS 45.0%
! GTGTTGATGTGTCAGTGTTC+AGG - chr1_3:71163960-71163979 None:intergenic 45.0%
CCTTTCAACATCCTCTTTGC+GGG - chr1_3:71164099-71164118 None:intergenic 45.0%
CCCTTTCAACATCCTCTTTG+CGG - chr1_3:71164100-71164119 None:intergenic 45.0%
CCGCAAAGAGGATGTTGAAA+GGG + chr1_3:71164097-71164116 Msa0138330:CDS 45.0%
TATTCCACGTTGCTGCCTTT+GGG + chr1_3:71164141-71164160 Msa0138330:CDS 45.0%
! CTCTTTTCCTGACATCCCAA+AGG - chr1_3:71164159-71164178 None:intergenic 45.0%
!! CAATGCAAGCGTCGAGTATA+TGG - chr1_3:71164229-71164248 None:intergenic 45.0%
GGATCAACGTGGCTATCAAT+TGG - chr1_3:71164347-71164366 None:intergenic 45.0%
GCTCTCTTTGGTTGTTTGGT+GGG + chr1_3:71164481-71164500 Msa0138330:intron 45.0%
GGGATACAGGTGGAGATAAA+TGG + chr1_3:71164671-71164690 Msa0138330:intron 45.0%
TCCTCTCAAGAAATGACACC+AGG + chr1_3:71164959-71164978 Msa0138330:intron 45.0%
!! TCCTGGTGTCATTTCTTGAG+AGG - chr1_3:71164963-71164982 None:intergenic 45.0%
CCATGGTTATGATCCTTGGA+AGG - chr1_3:71165047-71165066 None:intergenic 45.0%
CCTTCCAAGGATCATAACCA+TGG + chr1_3:71165044-71165063 Msa0138330:CDS 45.0%
CTTGCCATGGTTATGATCCT+TGG - chr1_3:71165051-71165070 None:intergenic 45.0%
CAAGGATCATAACCATGGCA+AGG + chr1_3:71165049-71165068 Msa0138330:CDS 45.0%
GGTCTGCTTCTGTTCAGAAT+TGG + chr1_3:71165075-71165094 Msa0138330:CDS 45.0%
GGAAAACAACCTATAGCTGC+TGG + chr1_3:71165195-71165214 Msa0138330:CDS 45.0%
AATTCCTCCAACCTCTACTC+AGG + chr1_3:71165336-71165355 Msa0138330:CDS 45.0%
TGTTCTTGCGAAGATTTGCC+AGG + chr1_3:71165409-71165428 Msa0138330:CDS 45.0%
GTTCTTGCGAAGATTTGCCA+GGG + chr1_3:71165410-71165429 Msa0138330:CDS 45.0%
ATCCATTGCTTAATCGGTGG+TGG + chr1_3:71165450-71165469 Msa0138330:CDS 45.0%
GAAGGAGGATGAATGGTTGA+GGG - chr1_3:71165478-71165497 None:intergenic 45.0%
AGAGCTCAAATCCTAGAGCT+TGG + chr1_3:71165638-71165657 Msa0138330:intron 45.0%
AAAAGTCTGCACCAAGCTCT+AGG - chr1_3:71165652-71165671 None:intergenic 45.0%
!! AGAAGGTGCTTCTAGCAACT+TGG - chr1_3:71165828-71165847 None:intergenic 45.0%
GGGGTTCGAACATAAAAGGA+AGG - chr1_3:71166090-71166109 None:intergenic 45.0%
CCCCTTTAGATGAGAATGCA+AGG + chr1_3:71166106-71166125 Msa0138330:intron 45.0%
GAGCAAGCATTCTGACTGAT+TGG + chr1_3:71166128-71166147 Msa0138330:intron 45.0%
CTTAAAGCCAAAGAGGAGCT+TGG + chr1_3:71166208-71166227 Msa0138330:CDS 45.0%
AACATAGCCAAGCTCCTCTT+TGG - chr1_3:71166218-71166237 None:intergenic 45.0%
ACAGAGGAAAAGGCAAACTC+TGG + chr1_3:71166288-71166307 Msa0138330:CDS 45.0%
AGGAAAAGGCAAACTCTGGA+TGG + chr1_3:71166292-71166311 Msa0138330:CDS 45.0%
GGAAAAGGCAAACTCTGGAT+GGG + chr1_3:71166293-71166312 Msa0138330:CDS 45.0%
ATGGGCCTACCATCTATACT+TGG + chr1_3:71166311-71166330 Msa0138330:CDS 45.0%
ATGACCTCACTATTCTGTGC+TGG + chr1_3:71166352-71166371 Msa0138330:CDS 45.0%
GAAACCAGCACAGAATAGTG+AGG - chr1_3:71166359-71166378 None:intergenic 45.0%
ACATAATCCCCATGTCTGGA+AGG - chr1_3:71166381-71166400 None:intergenic 45.0%
ATCAATGTGGATGACAAGGC+TGG + chr1_3:71166435-71166454 Msa0138330:CDS 45.0%
AGCCAGGTACCAAGCATAAA+TGG - chr1_3:71166497-71166516 None:intergenic 45.0%
ATGCTTGGTACCTGGCTAAA+AGG + chr1_3:71166500-71166519 Msa0138330:CDS 45.0%
TGCTTGGTACCTGGCTAAAA+GGG + chr1_3:71166501-71166520 Msa0138330:CDS 45.0%
!!! TCAATGCAAGAGGCTGGTTT+TGG + chr1_3:71166533-71166552 Msa0138330:CDS 45.0%
!!! ATTTAATTTTATTGTTTTTT+GGG - chr1_3:71163558-71163577 None:intergenic 5.0%
!!! TATTTAATTTTATTGTTTTT+TGG - chr1_3:71163559-71163578 None:intergenic 5.0%
!! AAAAACAATAAAATTAAATA+AGG + chr1_3:71163559-71163578 Msa0138330:intron 5.0%
!!! TACAAAATAAAAATTTTATT+AGG - chr1_3:71165913-71165932 None:intergenic 5.0%
GCATCAGCAGTTAACTGTCG+AGG - chr1_3:71162701-71162720 None:intergenic 50.0%
GCGTCCTGATGTTATTGCAG+AGG - chr1_3:71162899-71162918 None:intergenic 50.0%
CTGCCGCGGAAAAATGAAAC+CGG + chr1_3:71162931-71162950 Msa0138330:intron 50.0%
!!! TCGCCGGTTTCATTTTTCCG+CGG - chr1_3:71162937-71162956 None:intergenic 50.0%
GAAACCGGCGACAGTTAACT+TGG + chr1_3:71162946-71162965 Msa0138330:intron 50.0%
TCCTCGACAGTTAACTACCC+AGG + chr1_3:71162995-71163014 Msa0138330:intron 50.0%
CCTCGACAGTTAACTACCCA+GGG + chr1_3:71162996-71163015 Msa0138330:intron 50.0%
TCCTACGAATCCAAGTCCAC+CGG - chr1_3:71163739-71163758 None:intergenic 50.0%
AGAAGATTGGCGGAGGTCAA+AGG - chr1_3:71163811-71163830 None:intergenic 50.0%
GAGACCAAGGAGAAGATTGG+CGG - chr1_3:71163821-71163840 None:intergenic 50.0%
! ACAGGGTGTCCAACATGTGT+CGG - chr1_3:71164008-71164027 None:intergenic 50.0%
! GACACCCTGTTGTTGATGAG+AGG + chr1_3:71164018-71164037 Msa0138330:intron 50.0%
CCCGCAAAGAGGATGTTGAA+AGG + chr1_3:71164096-71164115 Msa0138330:CDS 50.0%
!! GATGTTGAAAGGGTACTCCG+TGG + chr1_3:71164107-71164126 Msa0138330:CDS 50.0%
GTATTCCACGTTGCTGCCTT+TGG + chr1_3:71164140-71164159 Msa0138330:CDS 50.0%
GGCTCTCTTTGGTTGTTTGG+TGG + chr1_3:71164480-71164499 Msa0138330:intron 50.0%
GTTCGTCCAGCTGCAATCTA+TGG + chr1_3:71165003-71165022 Msa0138330:CDS 50.0%
TCCAGCTGCAATCTATGGAC+CGG + chr1_3:71165008-71165027 Msa0138330:CDS 50.0%
AAGCAGACCTAACCTTGCCA+TGG - chr1_3:71165064-71165083 None:intergenic 50.0%
AACTCCTGAGTAGAGGTTGG+AGG - chr1_3:71165343-71165362 None:intergenic 50.0%
CCAAACTCCTGAGTAGAGGT+TGG - chr1_3:71165346-71165365 None:intergenic 50.0%
CCAACCTCTACTCAGGAGTT+TGG + chr1_3:71165343-71165362 Msa0138330:CDS 50.0%
! AGCCACCACCGATTAAGCAA+TGG - chr1_3:71165455-71165474 None:intergenic 50.0%
GGAAGGAGGATGAATGGTTG+AGG - chr1_3:71165479-71165498 None:intergenic 50.0%
TCACTCGGAAGGAGGATGAA+TGG - chr1_3:71165485-71165504 None:intergenic 50.0%
CTGACCTTGAGTGCTTCACT+CGG - chr1_3:71165500-71165519 None:intergenic 50.0%
GAAGGGCAAACAGATAAGGG+TGG - chr1_3:71165992-71166011 None:intergenic 50.0%
!! TGCTGGTTTCCTTCCAGACA+TGG + chr1_3:71166369-71166388 Msa0138330:CDS 50.0%
! GCTGGTTTCCTTCCAGACAT+GGG + chr1_3:71166370-71166389 Msa0138330:CDS 50.0%
CTGGTTTCCTTCCAGACATG+GGG + chr1_3:71166371-71166390 Msa0138330:CDS 50.0%
AACAGCTGTGCACGTCATTG+AGG + chr1_3:71166471-71166490 Msa0138330:CDS 50.0%
GGCCATTTATGCTTGGTACC+TGG + chr1_3:71166492-71166511 Msa0138330:CDS 50.0%
TTGGTACCTGGCTAAAAGGG+TGG + chr1_3:71166504-71166523 Msa0138330:CDS 50.0%
GTGGATCCTGTCAATGCAAG+AGG + chr1_3:71166523-71166542 Msa0138330:CDS 50.0%
ATCCTGTCAATGCAAGAGGC+TGG + chr1_3:71166527-71166546 Msa0138330:CDS 50.0%
! AACCAGCCTCTTGCATTGAC+AGG - chr1_3:71166532-71166551 None:intergenic 50.0%
TCTCACAGGATTGTGGGGAC+TGG + chr1_3:71162452-71162471 Msa0138330:five_prime_UTR 55.0%
CCCTGGGTAGTTAACTGTCG+AGG - chr1_3:71162999-71163018 None:intergenic 55.0%
GGGAAGAGCTTCGTAGTGAC+CGG + chr1_3:71163717-71163736 Msa0138330:CDS 55.0%
AAGAGCTTCGTAGTGACCGG+TGG + chr1_3:71163720-71163739 Msa0138330:CDS 55.0%
! TTCGTAGTGACCGGTGGACT+TGG + chr1_3:71163726-71163745 Msa0138330:CDS 55.0%
! ACCGGTGGACTTGGATTCGT+AGG + chr1_3:71163735-71163754 Msa0138330:CDS 55.0%
CGTAGGATCTGCTCTCTGCT+TGG + chr1_3:71163752-71163771 Msa0138330:CDS 55.0%
ACCTCCGCCAATCTTCTCCT+TGG + chr1_3:71163814-71163833 Msa0138330:CDS 55.0%
ACCAAGGAGAAGATTGGCGG+AGG - chr1_3:71163818-71163837 None:intergenic 55.0%
AGGGGATGTTACCCGCAAAG+AGG + chr1_3:71164085-71164104 Msa0138330:intron 55.0%
GGAATACGCAGTCAGCACCA+CGG - chr1_3:71164127-71164146 None:intergenic 55.0%
ACATCCCAAAGGCAGCAACG+TGG - chr1_3:71164148-71164167 None:intergenic 55.0%
!! GTTGCTGCCTTTGGGATGTC+AGG + chr1_3:71164149-71164168 Msa0138330:CDS 55.0%
! CTCGACGCTTGCATTGACCT+TGG + chr1_3:71164233-71164252 Msa0138330:CDS 55.0%
TGCGGCTGTATGGATCAACG+TGG - chr1_3:71164358-71164377 None:intergenic 55.0%
CCAGCTGCAATCTATGGACC+GGG + chr1_3:71165009-71165028 Msa0138330:CDS 55.0%
CAGCTGCAATCTATGGACCG+GGG + chr1_3:71165010-71165029 Msa0138330:CDS 55.0%
AGCTGCAATCTATGGACCGG+GGG + chr1_3:71165011-71165030 Msa0138330:CDS 55.0%
ACAACCTATAGCTGCTGGCC+AGG + chr1_3:71165200-71165219 Msa0138330:CDS 55.0%
TATGCCTGGCCAGCAGCTAT+AGG - chr1_3:71165207-71165226 None:intergenic 55.0%
TGAGTGCTTCACTCGGAAGG+AGG - chr1_3:71165493-71165512 None:intergenic 55.0%
CCTTGAGTGCTTCACTCGGA+AGG - chr1_3:71165496-71165515 None:intergenic 55.0%
! CCTTCCGAGTGAAGCACTCA+AGG + chr1_3:71165493-71165512 Msa0138330:CDS 55.0%
GGAGCTTGGCTATGTTCCCA+TGG + chr1_3:71166222-71166241 Msa0138330:CDS 55.0%
! CAGGATCCACCCTTTTAGCC+AGG - chr1_3:71166513-71166532 None:intergenic 55.0%
! GCATCGGCAGTTAACTGCCG+CGG + chr1_3:71162917-71162936 Msa0138330:intron 60.0%
CCCGGTCCATAGATTGCAGC+TGG - chr1_3:71165012-71165031 None:intergenic 60.0%
TCTATGGACCGGGGGAAGAC+AGG + chr1_3:71165019-71165038 Msa0138330:CDS 60.0%
GGGAAGACAGGCACCTTCCA+AGG + chr1_3:71165031-71165050 Msa0138330:CDS 60.0%
AGAATCCATCCCCTCTCGCG+AGG - chr1_3:71166251-71166270 None:intergenic 60.0%
!! GGAAGGTGCCTGTCTTCCCC+CGG - chr1_3:71165030-71165049 None:intergenic 65.0%
TCCCATGGTGACCTCGCGAG+AGG + chr1_3:71166237-71166256 Msa0138330:CDS 65.0%
CCCTCTCGCGAGGTCACCAT+GGG - chr1_3:71166241-71166260 None:intergenic 65.0%
CCCATGGTGACCTCGCGAGA+GGG + chr1_3:71166238-71166257 Msa0138330:CDS 65.0%
CCATGGTGACCTCGCGAGAG+GGG + chr1_3:71166239-71166258 Msa0138330:CDS 65.0%
CCCCTCTCGCGAGGTCACCA+TGG - chr1_3:71166242-71166261 None:intergenic 70.0%
GGTGACCTCGCGAGAGGGGA+TGG + chr1_3:71166243-71166262 Msa0138330:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 71162023 71167000 71162023 ID=Msa0138330;Name=Msa0138330
chr1_3 mRNA 71162023 71167000 71162023 ID=Msa0138330-mRNA-1;Parent=Msa0138330;Name=Msa0138330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=542|1|1|1|0.8|0.66|6|385|479
chr1_3 exon 71162023 71162508 71162023 ID=Msa0138330-mRNA-1:exon:24693;Parent=Msa0138330-mRNA-1
chr1_3 exon 71163631 71163876 71163631 ID=Msa0138330-mRNA-1:exon:24694;Parent=Msa0138330-mRNA-1
chr1_3 exon 71164087 71164429 71164087 ID=Msa0138330-mRNA-1:exon:24695;Parent=Msa0138330-mRNA-1
chr1_3 exon 71164969 71165240 71164969 ID=Msa0138330-mRNA-1:exon:24696;Parent=Msa0138330-mRNA-1
chr1_3 exon 71165315 71165514 71165315 ID=Msa0138330-mRNA-1:exon:24697;Parent=Msa0138330-mRNA-1
chr1_3 exon 71166181 71167000 71166181 ID=Msa0138330-mRNA-1:exon:24698;Parent=Msa0138330-mRNA-1
chr1_3 five_prime_UTR 71162023 71162508 71162023 ID=Msa0138330-mRNA-1:five_prime_utr;Parent=Msa0138330-mRNA-1
chr1_3 five_prime_UTR 71163631 71163686 71163631 ID=Msa0138330-mRNA-1:five_prime_utr;Parent=Msa0138330-mRNA-1
chr1_3 CDS 71163687 71163876 71163687 ID=Msa0138330-mRNA-1:cds;Parent=Msa0138330-mRNA-1
chr1_3 CDS 71164087 71164429 71164087 ID=Msa0138330-mRNA-1:cds;Parent=Msa0138330-mRNA-1
chr1_3 CDS 71164969 71165240 71164969 ID=Msa0138330-mRNA-1:cds;Parent=Msa0138330-mRNA-1
chr1_3 CDS 71165315 71165514 71165315 ID=Msa0138330-mRNA-1:cds;Parent=Msa0138330-mRNA-1
chr1_3 CDS 71166181 71166615 71166181 ID=Msa0138330-mRNA-1:cds;Parent=Msa0138330-mRNA-1
chr1_3 three_prime_UTR 71166616 71167000 71166616 ID=Msa0138330-mRNA-1:three_prime_utr;Parent=Msa0138330-mRNA-1
Gene Sequence

>Msa0138330

ATGCACTTGAGCGAGAATGAAGGAATTGAGGGGAAGAGCTTCGTAGTGACCGGTGGACTTGGATTCGTAGGATCTGCTCTCTGCTTGGAACTCATAAGAAGAGGTGCTCAACAGGTTCGTGCCTTTGACCTCCGCCAATCTTCTCCTTGGTCTCATCTTCTTAAACTCAAGGGAGTCAACTGCATACAAGGGGATGTTACCCGCAAAGAGGATGTTGAAAGGGTACTCCGTGGTGCTGACTGCGTATTCCACGTTGCTGCCTTTGGGATGTCAGGAAAAGAGATGCTGCAATTTGGTCGAGTTGATGAAGTCAATATAAACGGGACATGCCATATACTCGACGCTTGCATTGACCTTGGTATCAAAAGGCTTGTTTATTGTAGCACATACAATGTTGTCTTTGGCGGTCAAAAAATACTTAACGGAAATGAGGCTTTGCCGTATTTCCCAATTGATAGCCACGTTGATCCATACAGCCGCAGTAAATCAATTGCTGAACAGTTGGTTCTAAAGAATAATGCCCGCACTCTCAAAAATGACACCAGGAATCATCTATACACTTGTGCTGTTCGTCCAGCTGCAATCTATGGACCGGGGGAAGACAGGCACCTTCCAAGGATCATAACCATGGCAAGGTTAGGTCTGCTTCTGTTCAGAATTGGTGACAAAACTGTAAAGTCAGATTGGGTTTTTGTTGATAACCTTGTCCTTGCTCTTATAATGGCAAGTATGGGACTTTTGGATGACAACAATGACAAAGGAAAACAACCTATAGCTGCTGGCCAGGCATACTTTATATGTGACGGTTCACCTGTCAATTCTTTTGAATTCCTCCAACCTCTACTCAGGAGTTTGGATTATGAACTACCAAAAAGATCTTTAACTCTTGAACATGCTCTTGTTCTTGCGAAGATTTGCCAGGGTGTTTATACGATCTTATATCCATTGCTTAATCGGTGGTGGCTCCCTCAACCATTCATCCTCCTTCCGAGTGAAGCACTCAAGGTGGGAGTGACTCACTATTTCTCTTATCTTAAAGCCAAAGAGGAGCTTGGCTATGTTCCCATGGTGACCTCGCGAGAGGGGATGGATTCTACCATATCTTACTGGAAACAGAGGAAAAGGCAAACTCTGGATGGGCCTACCATCTATACTTGGCTATTTTGTGTCGTTGGAATGACCTCACTATTCTGTGCTGGTTTCCTTCCAGACATGGGGATTATGTTTCTTCTCAGAGCTATATGTCTATTCGTCTTTCGATCAATGTGGATGACAAGGCTGGTATTCATTATAGCAACAGCTGTGCACGTCATTGAGGCCATTTATGCTTGGTACCTGGCTAAAAGGGTGGATCCTGTCAATGCAAGAGGCTGGTTTTGGCAAACATTTGCTCTGGGATTCTTTTCATTGCGTTTTCTGTTGAAAAGAGCAAGGGAATAA
Protein sequence

>Msa0138330

MHLSENEGIEGKSFVVTGGLGFVGSALCLELIRRGAQQVRAFDLRQSSPWSHLLKLKGVNCIQGDVTRKEDVERVLRGADCVFHVAAFGMSGKEMLQFGRVDEVNINGTCHILDACIDLGIKRLVYCSTYNVVFGGQKILNGNEALPYFPIDSHVDPYSRSKSIAEQLVLKNNARTLKNDTRNHLYTCAVRPAAIYGPGEDRHLPRIITMARLGLLLFRIGDKTVKSDWVFVDNLVLALIMASMGLLDDNNDKGKQPIAAGQAYFICDGSPVNSFEFLQPLLRSLDYELPKRSLTLEHALVLAKICQGVYTILYPLLNRWWLPQPFILLPSEALKVGVTHYFSYLKAKEELGYVPMVTSREGMDSTISYWKQRKRQTLDGPTIYTWLFCVVGMTSLFCAGFLPDMGIMFLLRAICLFVFRSMWMTRLVFIIATAVHVIEAIYAWYLAKRVDPVNARGWFWQTFALGFFSLRFLLKRARE*