AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527220 MtrunA17_Chr1g0157471 98.330 479 8 0 1 479 1 479 0.0 975
Msa0527220 MtrunA17_Chr3g0136511 33.420 383 220 11 15 382 10 372 3.42e-47 171
Msa0527220 MtrunA17_Chr4g0033711 26.542 373 238 7 12 377 14 357 1.37e-25 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527220 AT2G33630.1 68.058 479 151 2 1 479 1 477 0.0 698
Msa0527220 AT1G47290.1 34.759 374 212 9 15 377 13 365 2.12e-57 195
Msa0527220 AT1G47290.2 34.853 373 211 9 15 376 13 364 4.49e-57 196
Msa0527220 AT2G26260.1 34.817 382 214 11 15 382 13 373 1.36e-53 189
Msa0527220 AT2G26260.2 36.268 284 160 8 103 382 16 282 1.28e-45 166
Msa0527220 AT2G43420.1 29.167 384 230 13 12 383 13 366 8.20e-31 125

Find 179 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCTTATAATGGCAAGTA+TGG 0.214205 3_4:-81491140 Msa0527220:CDS
AGTAAGAATTTATTTCTTAT+TGG 0.234471 3_4:-81494111 Msa0527220:five_prime_UTR
AATGGCAAGTATGGGACTTT+TGG 0.239198 3_4:-81491131 Msa0527220:CDS
ATGCTTGGTACCTGGCTAAA+AGG 0.246074 3_4:-81489786 Msa0527220:CDS
ATATCCTGGTTCACTCAATA+TGG 0.267400 3_4:+81493806 None:intergenic
TCTTATATCCATTGCTTAAT+CGG 0.284715 3_4:-81490842 Msa0527220:CDS
GTAAGAATTTATTTCTTATT+GGG 0.288164 3_4:-81494110 Msa0527220:five_prime_UTR
AGCCAGGTACCAAGCATAAA+TGG 0.288704 3_4:+81489792 None:intergenic
CCTTGTCCTTGCTCTTATAA+TGG 0.294695 3_4:-81491149 Msa0527220:CDS
GTATTCCACGTTGCTGCCTT+TGG 0.307989 3_4:-81492146 Msa0527220:CDS
TCTCTTTCCCGTCAATTTCA+TGG 0.317085 3_4:-81489576 Msa0527220:three_prime_UTR
TCATTTCTTAACATTAACTA+TGG 0.321714 3_4:+81489621 None:intergenic
TCAATGCAAGAGGCTGGTTT+TGG 0.327605 3_4:-81489753 Msa0527220:CDS
AGGTAGATTTACTCGTTTGC+AGG 0.331840 3_4:-81493964 Msa0527220:five_prime_UTR
CAATGCAAGCGTCGAGTATA+TGG 0.342847 3_4:+81492060 None:intergenic
AGCACATACAATGTTGTCTT+TGG 0.343034 3_4:-81492008 Msa0527220:CDS
CCTCTGTTTCCAGTAAGATA+TGG 0.351899 3_4:+81490014 None:intergenic
CCAACCTCTACTCAGGAGTT+TGG 0.352731 3_4:-81490943 Msa0527220:CDS
AACATAGCCAAGCTCCTCTT+TGG 0.353103 3_4:+81490071 None:intergenic
TGTTCTTGCGAAGATTTGCC+AGG 0.358392 3_4:-81490877 Msa0527220:CDS
GGGTTAAATCACTCGTTTGT+AGG 0.361474 3_4:-81494050 Msa0527220:five_prime_UTR
CCTTTCAACATCCTCTTTGC+GGG 0.365866 3_4:+81492190 None:intergenic
GTTCGTCCAGCTGCAATCTA+TGG 0.369457 3_4:-81491283 Msa0527220:CDS
GGATCAACGTGGCTATCAAT+TGG 0.376273 3_4:+81491942 None:intergenic
ACAAATAGGCTAAACTGTTA+TGG 0.378081 3_4:-81489388 Msa0527220:three_prime_UTR
ACAAAATAGCCAAGTATAGA+TGG 0.384180 3_4:+81489966 None:intergenic
TCATCGTGGTTGTAACAAAT+AGG 0.389491 3_4:-81489402 Msa0527220:three_prime_UTR
TGGATTCTACCATATCTTAC+TGG 0.392214 3_4:-81490023 Msa0527220:CDS
ACCTCCGCCAATCTTCTCCT+TGG 0.396991 3_4:-81492472 Msa0527220:CDS
TAGATCAGGTAGATCTAGTA+AGG 0.399237 3_4:-81494025 Msa0527220:five_prime_UTR
GTTGATGAAGTCAATATAAA+CGG 0.405097 3_4:-81492089 Msa0527220:CDS
TATTGGGTTGTAAAGCTTGT+TGG 0.406561 3_4:-81494094 Msa0527220:five_prime_UTR
CTTGCCATGGTTATGATCCT+TGG 0.407037 3_4:+81491238 None:intergenic
TATTCCACGTTGCTGCCTTT+GGG 0.407479 3_4:-81492145 Msa0527220:CDS
GGTCTGCTTCTGTTCAGAAT+TGG 0.410622 3_4:-81491211 Msa0527220:CDS
CCCTTTCAACATCCTCTTTG+CGG 0.413090 3_4:+81492189 None:intergenic
CATAAGAAGAGGTGCTCAAC+AGG 0.414942 3_4:-81492507 Msa0527220:CDS
TGCTGGTTTCCTTCCAGACA+TGG 0.418434 3_4:-81489917 Msa0527220:CDS
ATTGATTTACTGCGGCTGTA+TGG 0.427968 3_4:+81491921 None:intergenic
ACAACCTATAGCTGCTGGCC+AGG 0.434917 3_4:-81491086 Msa0527220:CDS
ACAAAACTGTAAAGTCAGAT+TGG 0.435185 3_4:-81491186 Msa0527220:CDS
GGCCATTTATGCTTGGTACC+TGG 0.438421 3_4:-81489794 Msa0527220:CDS
ATAAGAAATAAATTCTTACT+TGG 0.450901 3_4:+81494114 None:intergenic
GTTGCTGCCTTTGGGATGTC+AGG 0.451234 3_4:-81492137 Msa0527220:CDS
TATGCCTGGCCAGCAGCTAT+AGG 0.454636 3_4:+81491082 None:intergenic
AGAAACATAATCCCCATGTC+TGG 0.455167 3_4:+81489904 None:intergenic
GCATTGACCTTGGTATCAAA+AGG 0.456468 3_4:-81492043 Msa0527220:CDS
TTCGTAGTGACCGGTGGACT+TGG 0.456621 3_4:-81492560 Msa0527220:CDS
ACAAGTGTATAGATGATTCC+TGG 0.458369 3_4:+81491309 None:intergenic
GGAAAAGAGATGCTGCAATT+TGG 0.461139 3_4:-81492116 Msa0527220:CDS
TCCAGCTGCAATCTATGGAC+CGG 0.461971 3_4:-81491278 Msa0527220:CDS
TGCTTGGTACCTGGCTAAAA+GGG 0.463955 3_4:-81489785 Msa0527220:CDS
CAAAACTGTAAAGTCAGATT+GGG 0.467206 3_4:-81491185 Msa0527220:CDS
GATCAACGTGGCTATCAATT+GGG 0.469429 3_4:+81491943 None:intergenic
CCAGCTGCAATCTATGGACC+GGG 0.472395 3_4:-81491277 Msa0527220:CDS
CTTACTGGAAACAGAGGAAA+AGG 0.472903 3_4:-81490008 Msa0527220:CDS
CGTAGGATCTGCTCTCTGCT+TGG 0.474320 3_4:-81492534 Msa0527220:CDS
CCCGGTCCATAGATTGCAGC+TGG 0.483393 3_4:+81491277 None:intergenic
GGATAATCTCACAGGATTGT+GGG 0.483829 3_4:-81493841 Msa0527220:five_prime_UTR
ACTGATAAATTTATATAAGC+GGG 0.484241 3_4:+81489528 None:intergenic
TTGATGAAGTCAATATAAAC+GGG 0.485210 3_4:-81492088 Msa0527220:CDS
TGGCTATCAATTGGGAAATA+CGG 0.489778 3_4:+81491951 None:intergenic
CAAGTTGCCATGAAATTGAC+GGG 0.490799 3_4:+81489569 None:intergenic
GCTGGTTTCCTTCCAGACAT+GGG 0.490842 3_4:-81489916 Msa0527220:CDS
CTCTTATCTTAAAGCCAAAG+AGG 0.491886 3_4:-81490085 Msa0527220:CDS
GGTGACCTCGCGAGAGGGGA+TGG 0.492051 3_4:-81490043 Msa0527220:CDS
AACCAGCCTCTTGCATTGAC+AGG 0.492417 3_4:+81489757 None:intergenic
AGCGAGAATGAAGGAATTGA+GGG 0.492669 3_4:-81492590 Msa0527220:CDS
GGTTAAATCACTCGTTTGTA+GGG 0.493207 3_4:-81494049 Msa0527220:five_prime_UTR
GAGCGAGAATGAAGGAATTG+AGG 0.495495 3_4:-81492591 Msa0527220:CDS
ATCCATTGCTTAATCGGTGG+TGG 0.498612 3_4:-81490836 Msa0527220:CDS
ATGACCTCACTATTCTGTGC+TGG 0.499888 3_4:-81489934 Msa0527220:CDS
AGGAAAAGGCAAACTCTGGA+TGG 0.500259 3_4:-81489994 Msa0527220:CDS
CTTAAAGCCAAAGAGGAGCT+TGG 0.500437 3_4:-81490078 Msa0527220:CDS
TAAATCAATTGCTGAACAGT+TGG 0.500574 3_4:-81491907 Msa0527220:CDS
GTCTCATCTTCTTAAACTCA+AGG 0.500577 3_4:-81492450 Msa0527220:CDS
TGGATAATCTCACAGGATTG+TGG 0.503281 3_4:-81493842 Msa0527220:five_prime_UTR
ATCATAACCATGGCAAGGTT+AGG 0.504342 3_4:-81491232 Msa0527220:CDS
GATGAGACCAAGGAGAAGAT+TGG 0.505513 3_4:+81492465 None:intergenic
ATTAACTATGGTACAAGAGA+AGG 0.506695 3_4:+81489633 None:intergenic
ACATACAATGTTGTCTTTGG+CGG 0.510858 3_4:-81492005 Msa0527220:CDS
AAGGGAGTCAACTGCATACA+AGG 0.513890 3_4:-81492431 Msa0527220:intron
CTGGTTTCCTTCCAGACATG+GGG 0.514031 3_4:-81489915 Msa0527220:CDS
CCCTCTCGCGAGGTCACCAT+GGG 0.515373 3_4:+81490048 None:intergenic
TATCCTGGTTCACTCAATAT+GGG 0.516828 3_4:+81493807 None:intergenic
CCCATGGTGACCTCGCGAGA+GGG 0.517537 3_4:-81490048 Msa0527220:CDS
GGAAGGAGGATGAATGGTTG+AGG 0.518907 3_4:+81490810 None:intergenic
ACAAGTTGCCATGAAATTGA+CGG 0.521022 3_4:+81489568 None:intergenic
CTCGTTTGTAGGGATAGATC+AGG 0.521544 3_4:-81494039 Msa0527220:five_prime_UTR
AGGAATTCAAAAGAATTGAC+AGG 0.521858 3_4:+81490966 None:intergenic
GGAAGGTGCCTGTCTTCCCC+CGG 0.522402 3_4:+81491259 None:intergenic
CACTGATAAATTTATATAAG+CGG 0.528305 3_4:+81489527 None:intergenic
CGCTTATATAAATTTATCAG+TGG 0.535005 3_4:-81489526 Msa0527220:three_prime_UTR
ACAGAGGAAAAGGCAAACTC+TGG 0.535279 3_4:-81489998 Msa0527220:CDS
TCATTGAGGCCATTTATGCT+TGG 0.535862 3_4:-81489801 Msa0527220:CDS
ATCACACACAAGAAATATCC+TGG 0.538725 3_4:+81493792 None:intergenic
GGGAAGACAGGCACCTTCCA+AGG 0.539203 3_4:-81491255 Msa0527220:CDS
CCAAACTCCTGAGTAGAGGT+TGG 0.541259 3_4:+81490943 None:intergenic
GAAGGAGGATGAATGGTTGA+GGG 0.545516 3_4:+81490811 None:intergenic
GGAAAACAACCTATAGCTGC+TGG 0.546273 3_4:-81491091 Msa0527220:CDS
CCGCAAAGAGGATGTTGAAA+GGG 0.547619 3_4:-81492189 Msa0527220:CDS
AATTCCTCCAACCTCTACTC+AGG 0.549595 3_4:-81490950 Msa0527220:CDS
AGAAGATTGGCGGAGGTCAA+AGG 0.550159 3_4:+81492478 None:intergenic
CCTTCCGAGTGAAGCACTCA+AGG 0.550376 3_4:-81490793 Msa0527220:intron
GGGAAGAGCTTCGTAGTGAC+CGG 0.553565 3_4:-81492569 Msa0527220:CDS
ATGGGCCTACCATCTATACT+TGG 0.554667 3_4:-81489975 Msa0527220:CDS
TCCTCTCAAGAAATGACACC+AGG 0.555886 3_4:-81491327 Msa0527220:intron
TCACTCGGAAGGAGGATGAA+TGG 0.556863 3_4:+81490804 None:intergenic
CGTCACATATAAAGTATGCC+TGG 0.561518 3_4:+81491068 None:intergenic
AACTCCTGAGTAGAGGTTGG+AGG 0.562335 3_4:+81490946 None:intergenic
TACCTAGTGGATAATCTCAC+AGG 0.563221 3_4:-81493849 Msa0527220:five_prime_UTR
TCTCACAGGATTGTGGGGAC+TGG 0.563480 3_4:-81493835 Msa0527220:five_prime_UTR
ATCCTGTCAATGCAAGAGGC+TGG 0.564149 3_4:-81489759 Msa0527220:CDS
GGAAAAGGCAAACTCTGGAT+GGG 0.565206 3_4:-81489993 Msa0527220:CDS
AGTTTAAGAAGATGAGACCA+AGG 0.565484 3_4:+81492455 None:intergenic
CCCCTCTCGCGAGGTCACCA+TGG 0.565665 3_4:+81490047 None:intergenic
ATCAATGTGGATGACAAGGC+TGG 0.566125 3_4:-81489851 Msa0527220:CDS
CCATTATAAGAGCAAGGACA+AGG 0.568547 3_4:+81491149 None:intergenic
CTCGACGCTTGCATTGACCT+TGG 0.569050 3_4:-81492053 Msa0527220:CDS
AAGATCAATCGAATCTAGCA+AGG 0.569465 3_4:-81493940 Msa0527220:five_prime_UTR
CCTTGAGTGCTTCACTCGGA+AGG 0.569790 3_4:+81490793 None:intergenic
AGAAGACAAAAGAGGAGTTG+TGG 0.575892 3_4:-81493892 Msa0527220:five_prime_UTR
ATGCACTTGAGCGAGAATGA+AGG 0.578625 3_4:-81492599 Msa0527220:CDS
AAGTAATTACTTGAGAGTGC+GGG 0.579690 3_4:+81491869 None:intergenic
ACATAATCCCCATGTCTGGA+AGG 0.580589 3_4:+81489908 None:intergenic
CCATGGTTATGATCCTTGGA+AGG 0.586083 3_4:+81491242 None:intergenic
CCCGCAAAGAGGATGTTGAA+AGG 0.586354 3_4:-81492190 Msa0527220:CDS
ACCAAGGAGAAGATTGGCGG+AGG 0.587768 3_4:+81492471 None:intergenic
AACAGCTGTGCACGTCATTG+AGG 0.591255 3_4:-81489815 Msa0527220:CDS
GCTCTTATAATGGCAAGTAT+GGG 0.591720 3_4:-81491139 Msa0527220:CDS
TCTCATCTTCTTAAACTCAA+GGG 0.592691 3_4:-81492449 Msa0527220:CDS
GATCCGCATGCAAATAACAT+TGG 0.594778 3_4:-81492656 Msa0527220:five_prime_UTR
CCATGGTGACCTCGCGAGAG+GGG 0.596607 3_4:-81490047 Msa0527220:CDS
GTTCTTGCGAAGATTTGCCA+GGG 0.600523 3_4:-81490876 Msa0527220:CDS
AAAGTAATTACTTGAGAGTG+CGG 0.601225 3_4:+81491868 None:intergenic
TTGGATGACAACAATGACAA+AGG 0.604527 3_4:-81491112 Msa0527220:CDS
CAGGCATACTTTATATGTGA+CGG 0.606262 3_4:-81491067 Msa0527220:intron
GTGGATCCTGTCAATGCAAG+AGG 0.606665 3_4:-81489763 Msa0527220:CDS
TTCGATCAATGTGGATGACA+AGG 0.608447 3_4:-81489855 Msa0527220:CDS
TCCCATGGTGACCTCGCGAG+AGG 0.608515 3_4:-81490049 Msa0527220:CDS
AATAGCCAAGTATAGATGGT+AGG 0.609337 3_4:+81489970 None:intergenic
GAGACCAAGGAGAAGATTGG+CGG 0.611013 3_4:+81492468 None:intergenic
GGAGCTTGGCTATGTTCCCA+TGG 0.613476 3_4:-81490064 Msa0527220:CDS
TATATCCATTGCTTAATCGG+TGG 0.615536 3_4:-81490839 Msa0527220:CDS
TTAACTATGGTACAAGAGAA+GGG 0.617968 3_4:+81489634 None:intergenic
AGGGGATGTTACCCGCAAAG+AGG 0.619247 3_4:-81492201 Msa0527220:CDS
AGCCACCACCGATTAAGCAA+TGG 0.619657 3_4:+81490834 None:intergenic
TGCTTGGAACTCATAAGAAG+AGG 0.621762 3_4:-81492518 Msa0527220:CDS
TCGCCAATGTTATTTGCATG+CGG 0.624249 3_4:+81492653 None:intergenic
TACTTGCCATTATAAGAGCA+AGG 0.625284 3_4:+81491143 None:intergenic
TAACCCATATTGAGTGAACC+AGG 0.628023 3_4:-81493810 Msa0527220:five_prime_UTR
TCCTACGAATCCAAGTCCAC+CGG 0.628700 3_4:+81492550 None:intergenic
CTGACCTTGAGTGCTTCACT+CGG 0.629307 3_4:+81490789 None:intergenic
ACCGGTGGACTTGGATTCGT+AGG 0.633076 3_4:-81492551 Msa0527220:CDS
TAATCCAAACTCCTGAGTAG+AGG 0.633324 3_4:+81490939 None:intergenic
GATAATCTCACAGGATTGTG+GGG 0.636241 3_4:-81493840 Msa0527220:five_prime_UTR
TATTCGTCTTTCGATCAATG+TGG 0.638850 3_4:-81489864 Msa0527220:CDS
GCGAGAATGAAGGAATTGAG+GGG 0.639547 3_4:-81492589 Msa0527220:CDS
TGAGTGCTTCACTCGGAAGG+AGG 0.639775 3_4:+81490796 None:intergenic
CAAGGATCATAACCATGGCA+AGG 0.642139 3_4:-81491237 Msa0527220:CDS
AAGAGCTTCGTAGTGACCGG+TGG 0.642476 3_4:-81492566 Msa0527220:CDS
ATCCTGTGAGATTATCCACT+AGG 0.642774 3_4:+81493847 None:intergenic
AGAATCCATCCCCTCTCGCG+AGG 0.645963 3_4:+81490038 None:intergenic
AGCTGCAATCTATGGACCGG+GGG 0.646902 3_4:-81491275 Msa0527220:CDS
TACTTAACACAACTACCTAG+TGG 0.649031 3_4:-81493862 Msa0527220:five_prime_UTR
CCATATCTTACTGGAAACAG+AGG 0.649984 3_4:-81490014 Msa0527220:CDS
GTTCAGCAATTGATTTACTG+CGG 0.652817 3_4:+81491913 None:intergenic
AGATCAATCGAATCTAGCAA+GGG 0.656933 3_4:-81493939 Msa0527220:five_prime_UTR
AAGCAGACCTAACCTTGCCA+TGG 0.659973 3_4:+81491225 None:intergenic
TTGGTACCTGGCTAAAAGGG+TGG 0.669560 3_4:-81489782 Msa0527220:CDS
AGATCAGGTAGATCTAGTAA+GGG 0.673973 3_4:-81494024 Msa0527220:five_prime_UTR
CAGCTGCAATCTATGGACCG+GGG 0.674195 3_4:-81491276 Msa0527220:CDS
CCTTCCAAGGATCATAACCA+TGG 0.677179 3_4:-81491242 Msa0527220:CDS
ATAAGATCGTATAAACACCC+TGG 0.697047 3_4:+81490859 None:intergenic
GAAACCAGCACAGAATAGTG+AGG 0.708076 3_4:+81489930 None:intergenic
GGAATACGCAGTCAGCACCA+CGG 0.736062 3_4:+81492162 None:intergenic
ACATCCCAAAGGCAGCAACG+TGG 0.737370 3_4:+81492141 None:intergenic
GATGTTGAAAGGGTACTCCG+TGG 0.759909 3_4:-81492179 Msa0527220:CDS
TGCGGCTGTATGGATCAACG+TGG 0.844770 3_4:+81491931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTATGTTAATTAATAAAA+AGG + chr3_4:81489857-81489876 None:intergenic 10.0%
!! GAAACAAAAAAAAAAAAAAA+GGG + chr3_4:81490460-81490479 None:intergenic 10.0%
!!! AAGTTTGATTTTATTTTATA+GGG + chr3_4:81490644-81490663 None:intergenic 10.0%
!!! AAAGTTTGATTTTATTTTAT+AGG + chr3_4:81490645-81490664 None:intergenic 10.0%
!! CATATAATTCATATTATTAA+CGG + chr3_4:81491268-81491287 None:intergenic 10.0%
!!! ACTCAATTTTATTTGATATT+TGG - chr3_4:81489434-81489453 Msa0527220:three_prime_UTR 15.0%
!! ATAAGAAATAAATTCTTACT+TGG + chr3_4:81489461-81489480 None:intergenic 15.0%
!!! AGTAAGAATTTATTTCTTAT+TGG - chr3_4:81489461-81489480 Msa0527220:three_prime_UTR 15.0%
!!! GTAAGAATTTATTTCTTATT+GGG - chr3_4:81489462-81489481 Msa0527220:three_prime_UTR 15.0%
!! ATTATATATATACTTGGATT+AGG + chr3_4:81489881-81489900 None:intergenic 15.0%
!! TTCTCAATTATATATATACT+TGG + chr3_4:81489887-81489906 None:intergenic 15.0%
!!! TAAAATATTTTCACAAGAAA+GGG + chr3_4:81489941-81489960 None:intergenic 15.0%
!! CGAAACAAAAAAAAAAAAAA+AGG + chr3_4:81490461-81490480 None:intergenic 15.0%
!!! TACTGATGAAAAATTTTATA+AGG - chr3_4:81490741-81490760 Msa0527220:intron 15.0%
!! ACAAAATTCTGAATATTTAT+AGG - chr3_4:81490800-81490819 Msa0527220:CDS 15.0%
!! AAAATAAATTTGGTCAAAAT+GGG + chr3_4:81490887-81490906 None:intergenic 15.0%
!!! CTTTAAGAACAAAATAAATT+TGG + chr3_4:81490897-81490916 None:intergenic 15.0%
!! TTTCTATATTTCATACAAAT+TGG - chr3_4:81492152-81492171 Msa0527220:CDS 15.0%
!! GATCAAATTAAACAATTAAA+AGG + chr3_4:81492998-81493017 None:intergenic 15.0%
!! AGACAAAAATAAAAGAGATA+GGG + chr3_4:81489814-81489833 None:intergenic 20.0%
!!! TTGAGAAGATTTTTATATAC+AGG - chr3_4:81489900-81489919 Msa0527220:CDS 20.0%
!!! AAAATATTTTCACAAGAAAG+GGG + chr3_4:81489940-81489959 None:intergenic 20.0%
!!! GTAAAATATTTTCACAAGAA+AGG + chr3_4:81489942-81489961 None:intergenic 20.0%
!! AAAAACACAAACATAATATG+TGG + chr3_4:81490128-81490147 None:intergenic 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr3_4:81490613-81490632 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr3_4:81490614-81490633 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - chr3_4:81490709-81490728 Msa0527220:intron 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG - chr3_4:81490710-81490729 Msa0527220:intron 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr3_4:81490769-81490788 Msa0527220:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr3_4:81490770-81490789 Msa0527220:intron 20.0%
!!! TTTTGGGTTAATTAAGTAAA+TGG + chr3_4:81490828-81490847 None:intergenic 20.0%
!! CAAAATAAATTTGGTCAAAA+TGG + chr3_4:81490888-81490907 None:intergenic 20.0%
!! GAATGAAATAAAGAAATGAA+AGG + chr3_4:81491169-81491188 None:intergenic 20.0%
!!! TTCTTTATTTCATTCCATTT+CGG - chr3_4:81491174-81491193 Msa0527220:CDS 20.0%
!!! TCTCTGTTAATTTTGTTTAA+GGG - chr3_4:81491352-81491371 Msa0527220:intron 20.0%
!! ATCAAAGTGAAATTAAAATG+TGG - chr3_4:81491936-81491955 Msa0527220:CDS 20.0%
!! TCAAAGTGAAATTAAAATGT+GGG - chr3_4:81491937-81491956 Msa0527220:CDS 20.0%
!! GATACATTAAATACAAAAAC+TGG + chr3_4:81493020-81493039 None:intergenic 20.0%
!!! AATGACATGCTTTTAAAATT+AGG - chr3_4:81493073-81493092 Msa0527220:intron 20.0%
!!! AAAAATTTTATTAGGCTTTC+AGG + chr3_4:81493191-81493210 None:intergenic 20.0%
!! TCATTTCTTAACATTAACTA+TGG + chr3_4:81493954-81493973 None:intergenic 20.0%
!! ACTGATAAATTTATATAAGC+GGG + chr3_4:81494047-81494066 None:intergenic 20.0%
!! CACTGATAAATTTATATAAG+CGG + chr3_4:81494048-81494067 None:intergenic 20.0%
!!! TTTTTAGGAAAAAACATGTA+AGG + chr3_4:81494140-81494159 None:intergenic 20.0%
!!! AAAATGTAATTCCCAATTTT+TGG - chr3_4:81494235-81494254 Msa0527220:five_prime_UTR 20.0%
! TAACAAGTGTGTAAAAAACA+AGG - chr3_4:81489501-81489520 Msa0527220:three_prime_UTR 25.0%
! AACAAGTGTGTAAAAAACAA+GGG - chr3_4:81489502-81489521 Msa0527220:three_prime_UTR 25.0%
!!! ATTTGTACTCGTTTGTTTTT+TGG - chr3_4:81489573-81489592 Msa0527220:three_prime_UTR 25.0%
!!! TTTTTTGGTTGTAAAAGCAA+AGG - chr3_4:81489588-81489607 Msa0527220:three_prime_UTR 25.0%
! GAGACAAAAATAAAAGAGAT+AGG + chr3_4:81489815-81489834 None:intergenic 25.0%
!! AAATATTTTCACAAGAAAGG+GGG + chr3_4:81489939-81489958 None:intergenic 25.0%
!!! TTGTGTTTTTAACACATTAC+AGG - chr3_4:81490138-81490157 Msa0527220:intron 25.0%
!! AACAATTTTCTTCTTCTTCT+AGG - chr3_4:81490353-81490372 Msa0527220:intron 25.0%
! AAAAAAAAAAAAAGGGAGAC+AGG + chr3_4:81490453-81490472 None:intergenic 25.0%
! ACACAACACTAAAAAAACAA+GGG - chr3_4:81490570-81490589 Msa0527220:intron 25.0%
! TAAACAAAATTAACAGAGAC+AGG + chr3_4:81491351-81491370 None:intergenic 25.0%
!!! GTCTCTGTTAATTTTGTTTA+AGG - chr3_4:81491351-81491370 Msa0527220:intron 25.0%
!!! CTCTGTTAATTTTGTTTAAG+GGG - chr3_4:81491353-81491372 Msa0527220:intron 25.0%
!! GTTGATGAAGTCAATATAAA+CGG - chr3_4:81491483-81491502 Msa0527220:intron 25.0%
! TTGATGAAGTCAATATAAAC+GGG - chr3_4:81491484-81491503 Msa0527220:intron 25.0%
! AAAAATACTTAACGGAAATG+AGG - chr3_4:81491593-81491612 Msa0527220:intron 25.0%
! TCTATGCTCTATCAAAATTA+AGG - chr3_4:81491745-81491764 Msa0527220:intron 25.0%
! TATCATTCTCTACAAAAACT+TGG + chr3_4:81491813-81491832 None:intergenic 25.0%
! TGATATTTACAGTCATACTT+AGG - chr3_4:81492075-81492094 Msa0527220:CDS 25.0%
!! TCAAGAGTTAAAGATCTTTT+TGG + chr3_4:81492666-81492685 None:intergenic 25.0%
! TCTTATATCCATTGCTTAAT+CGG - chr3_4:81492730-81492749 Msa0527220:intron 25.0%
! TGCTTGAAATAAATAAACAC+CGG - chr3_4:81493308-81493327 Msa0527220:intron 25.0%
! CGCTTATATAAATTTATCAG+TGG - chr3_4:81494046-81494065 Msa0527220:five_prime_UTR 25.0%
!!! GATGAGTTCATTCTTTTTTT+AGG + chr3_4:81494155-81494174 None:intergenic 25.0%
!!! TCTTTAAAGCTCCAAAAATT+GGG + chr3_4:81494249-81494268 None:intergenic 25.0%
!!! ATCTTTAAAGCTCCAAAAAT+TGG + chr3_4:81494250-81494269 None:intergenic 25.0%
GCTTTGCTTTCTCAAAAATT+CGG + chr3_4:81489316-81489335 None:intergenic 30.0%
!!! AAGAGCAATTTTTAGTTCAC+TGG + chr3_4:81489384-81489403 None:intergenic 30.0%
GTGTAAAAAGAAGACAAAAG+AGG - chr3_4:81489672-81489691 Msa0527220:three_prime_UTR 30.0%
! AATATTTTCACAAGAAAGGG+GGG + chr3_4:81489938-81489957 None:intergenic 30.0%
GACACAACACTAAAAAAACA+AGG - chr3_4:81490569-81490588 Msa0527220:intron 30.0%
! ACACTTTCCTTAAGCATTTT+AGG - chr3_4:81490677-81490696 Msa0527220:intron 30.0%
! CACTTTCCTTAAGCATTTTA+GGG - chr3_4:81490678-81490697 Msa0527220:intron 30.0%
TTTAGTCCCTAAAATGCTTA+AGG + chr3_4:81490687-81490706 None:intergenic 30.0%
TTAGGGACTAAAAATGTTGA+TGG - chr3_4:81490695-81490714 Msa0527220:intron 30.0%
TCTCATCTTCTTAAACTCAA+GGG - chr3_4:81491123-81491142 Msa0527220:CDS 30.0%
TAAATCAATTGCTGAACAGT+TGG - chr3_4:81491665-81491684 Msa0527220:intron 30.0%
AAAGTAATTACTTGAGAGTG+CGG + chr3_4:81491707-81491726 None:intergenic 30.0%
ATCAAAATTAAGGCTCTCTT+TGG - chr3_4:81491755-81491774 Msa0527220:intron 30.0%
AATGCTTACTCTTTCTTAAG+AGG + chr3_4:81491913-81491932 None:intergenic 30.0%
GAAATTAAAATGTGGGATAC+AGG - chr3_4:81491944-81491963 Msa0527220:CDS 30.0%
GAAAAGAAGAACTAGAAACA+TGG + chr3_4:81492017-81492036 None:intergenic 30.0%
!!! GTTTCTAGTTCTTCTTTTCA+TGG - chr3_4:81492018-81492037 Msa0527220:CDS 30.0%
ATTTCTTGAGAGGATGAAAA+AGG + chr3_4:81492239-81492258 None:intergenic 30.0%
ACAAAACTGTAAAGTCAGAT+TGG - chr3_4:81492386-81492405 Msa0527220:intron 30.0%
CAAAACTGTAAAGTCAGATT+GGG - chr3_4:81492387-81492406 Msa0527220:intron 30.0%
AGGAATTCAAAAGAATTGAC+AGG + chr3_4:81492609-81492628 None:intergenic 30.0%
ATAGTTGGAGACTTATATGT+AGG - chr3_4:81492833-81492852 Msa0527220:intron 30.0%
! AAAGTGCCTAACATATTTCT+AGG + chr3_4:81492859-81492878 None:intergenic 30.0%
AAGACTTTCAATGATCTCTT+TGG - chr3_4:81492879-81492898 Msa0527220:intron 30.0%
! ACTTTTGTTCTTGCATCTTT+TGG - chr3_4:81492952-81492971 Msa0527220:intron 30.0%
TACATATAGCTTAAGCTCAA+TGG - chr3_4:81493050-81493069 Msa0527220:intron 30.0%
CAAGACGATAAGAAATTAGA+AGG + chr3_4:81493131-81493150 None:intergenic 30.0%
TAATTTCTTATCGTCTTGAG+AGG - chr3_4:81493133-81493152 Msa0527220:intron 30.0%
AATAAACACCGGAACATATA+TGG - chr3_4:81493319-81493338 Msa0527220:intron 30.0%
AAGGTAATCCATATATGTTC+CGG + chr3_4:81493330-81493349 None:intergenic 30.0%
TCTTGAATGCAGTTGTATAA+AGG + chr3_4:81493349-81493368 None:intergenic 30.0%
ACAAAATAGCCAAGTATAGA+TGG + chr3_4:81493609-81493628 None:intergenic 30.0%
! TTTTCTGTTGAAAAGAGCAA+GGG - chr3_4:81493874-81493893 Msa0527220:five_prime_UTR 30.0%
TTAACTATGGTACAAGAGAA+GGG + chr3_4:81493941-81493960 None:intergenic 30.0%
ATTAACTATGGTACAAGAGA+AGG + chr3_4:81493942-81493961 None:intergenic 30.0%
AAAAAAGAATGAACTCATCG+TGG - chr3_4:81494156-81494175 Msa0527220:five_prime_UTR 30.0%
ACAAATAGGCTAAACTGTTA+TGG - chr3_4:81494184-81494203 Msa0527220:five_prime_UTR 30.0%
! TATTGGGTTGTAAAGCTTGT+TGG - chr3_4:81489478-81489497 Msa0527220:three_prime_UTR 35.0%
GGTTAAATCACTCGTTTGTA+GGG - chr3_4:81489523-81489542 Msa0527220:three_prime_UTR 35.0%
TAGATCAGGTAGATCTAGTA+AGG - chr3_4:81489547-81489566 Msa0527220:three_prime_UTR 35.0%
AGATCAGGTAGATCTAGTAA+GGG - chr3_4:81489548-81489567 Msa0527220:three_prime_UTR 35.0%
AAGATCAATCGAATCTAGCA+AGG - chr3_4:81489632-81489651 Msa0527220:three_prime_UTR 35.0%
AGATCAATCGAATCTAGCAA+GGG - chr3_4:81489633-81489652 Msa0527220:three_prime_UTR 35.0%
TACTTAACACAACTACCTAG+TGG - chr3_4:81489710-81489729 Msa0527220:CDS 35.0%
TATCCTGGTTCACTCAATAT+GGG + chr3_4:81489768-81489787 None:intergenic 35.0%
ATATCCTGGTTCACTCAATA+TGG + chr3_4:81489769-81489788 None:intergenic 35.0%
ATCACACACAAGAAATATCC+TGG + chr3_4:81489783-81489802 None:intergenic 35.0%
TTAACTGTCGAGGTTTATCT+CGG + chr3_4:81489976-81489995 None:intergenic 35.0%
!! AAAATGGCTTTGGTGAGAAT+TGG + chr3_4:81490084-81490103 None:intergenic 35.0%
TAAAAGACGTAAATGTCCCT+GGG + chr3_4:81490300-81490319 None:intergenic 35.0%
!! GCAGCAGCAACTTTTTATTT+GGG - chr3_4:81490400-81490419 Msa0527220:intron 35.0%
!! CAGCAGCAACTTTTTATTTG+GGG - chr3_4:81490401-81490420 Msa0527220:intron 35.0%
AGTTTAAGAAGATGAGACCA+AGG + chr3_4:81491120-81491139 None:intergenic 35.0%
GTCTCATCTTCTTAAACTCA+AGG - chr3_4:81491122-81491141 Msa0527220:CDS 35.0%
TAGTAAGATCAGATCCGAAA+TGG + chr3_4:81491191-81491210 None:intergenic 35.0%
AATACCTCTCATCAACAACA+GGG + chr3_4:81491311-81491330 None:intergenic 35.0%
AAATACCTCTCATCAACAAC+AGG + chr3_4:81491312-81491331 None:intergenic 35.0%
! AAACAAGCCTTTTGATACCA+AGG + chr3_4:81491539-81491558 None:intergenic 35.0%
AGCACATACAATGTTGTCTT+TGG - chr3_4:81491564-81491583 Msa0527220:intron 35.0%
ACATACAATGTTGTCTTTGG+CGG - chr3_4:81491567-81491586 Msa0527220:intron 35.0%
GGCGGTCAAAAAATACTTAA+CGG - chr3_4:81491585-81491604 Msa0527220:intron 35.0%
TGGCTATCAATTGGGAAATA+CGG + chr3_4:81491624-81491643 None:intergenic 35.0%
! GTTCAGCAATTGATTTACTG+CGG + chr3_4:81491662-81491681 None:intergenic 35.0%
! AAGTAATTACTTGAGAGTGC+GGG + chr3_4:81491706-81491725 None:intergenic 35.0%
ATTAAAATGTGGGATACAGG+TGG - chr3_4:81491947-81491966 Msa0527220:CDS 35.0%
! AGTTCTTCTTTTCATGGACA+AGG - chr3_4:81492024-81492043 Msa0527220:CDS 35.0%
TTGAGAGGATGAAAAAGGTT+AGG + chr3_4:81492234-81492253 None:intergenic 35.0%
ACAAGTGTATAGATGATTCC+TGG + chr3_4:81492266-81492285 None:intergenic 35.0%
TACTTGCCATTATAAGAGCA+AGG + chr3_4:81492432-81492451 None:intergenic 35.0%
TGCTCTTATAATGGCAAGTA+TGG - chr3_4:81492432-81492451 Msa0527220:CDS 35.0%
GCTCTTATAATGGCAAGTAT+GGG - chr3_4:81492433-81492452 Msa0527220:CDS 35.0%
TTGGATGACAACAATGACAA+AGG - chr3_4:81492460-81492479 Msa0527220:CDS 35.0%
CAGGCATACTTTATATGTGA+CGG - chr3_4:81492505-81492524 Msa0527220:CDS 35.0%
TACTTTATATGTGACGGTGA+TGG - chr3_4:81492511-81492530 Msa0527220:CDS 35.0%
ATAAGATCGTATAAACACCC+TGG + chr3_4:81492716-81492735 None:intergenic 35.0%
TATATCCATTGCTTAATCGG+TGG - chr3_4:81492733-81492752 Msa0527220:intron 35.0%
ATTCTACCTGACTGAATAGT+TGG - chr3_4:81492818-81492837 Msa0527220:intron 35.0%
TGTAGGCCTAGAAATATGTT+AGG - chr3_4:81492850-81492869 Msa0527220:intron 35.0%
CCTTACTTGAAAAAGACAGT+AGG + chr3_4:81493163-81493182 None:intergenic 35.0%
!!! CCTACTGTCTTTTTCAAGTA+AGG - chr3_4:81493160-81493179 Msa0527220:intron 35.0%
! TCAAGCATACAAGTTGAGAA+GGG + chr3_4:81493295-81493314 None:intergenic 35.0%
! TTCAAGCATACAAGTTGAGA+AGG + chr3_4:81493296-81493315 None:intergenic 35.0%
TAAAGGGGTTCGAACATAAA+AGG + chr3_4:81493380-81493399 None:intergenic 35.0%
TCCTTGCATTCTCATCTAAA+GGG + chr3_4:81493396-81493415 None:intergenic 35.0%
ATGCATGTTTGATATTCGAC+AGG - chr3_4:81493445-81493464 Msa0527220:intron 35.0%
ATGTTTGATATTCGACAGGT+GGG - chr3_4:81493449-81493468 Msa0527220:intron 35.0%
CTCTTATCTTAAAGCCAAAG+AGG - chr3_4:81493487-81493506 Msa0527220:intron 35.0%
TGGATTCTACCATATCTTAC+TGG - chr3_4:81493549-81493568 Msa0527220:intron 35.0%
AATAGCCAAGTATAGATGGT+AGG + chr3_4:81493605-81493624 None:intergenic 35.0%
TATTCGTCTTTCGATCAATG+TGG - chr3_4:81493708-81493727 Msa0527220:intron 35.0%
! TTTTGGCAAACATTTGCTCT+GGG - chr3_4:81493836-81493855 Msa0527220:five_prime_UTR 35.0%
! GTTTTCTGTTGAAAAGAGCA+AGG - chr3_4:81493873-81493892 Msa0527220:five_prime_UTR 35.0%
ACAAGTTGCCATGAAATTGA+CGG + chr3_4:81494007-81494026 None:intergenic 35.0%
TCATCGTGGTTGTAACAAAT+AGG - chr3_4:81494170-81494189 Msa0527220:five_prime_UTR 35.0%
GGGTTAAATCACTCGTTTGT+AGG - chr3_4:81489522-81489541 Msa0527220:three_prime_UTR 40.0%
AGGTAGATTTACTCGTTTGC+AGG - chr3_4:81489608-81489627 Msa0527220:three_prime_UTR 40.0%
AGAAGACAAAAGAGGAGTTG+TGG - chr3_4:81489680-81489699 Msa0527220:exon 40.0%
! TACCTAGTGGATAATCTCAC+AGG - chr3_4:81489723-81489742 Msa0527220:CDS 40.0%
ATCCTGTGAGATTATCCACT+AGG + chr3_4:81489728-81489747 None:intergenic 40.0%
TGGATAATCTCACAGGATTG+TGG - chr3_4:81489730-81489749 Msa0527220:CDS 40.0%
GGATAATCTCACAGGATTGT+GGG - chr3_4:81489731-81489750 Msa0527220:CDS 40.0%
GATAATCTCACAGGATTGTG+GGG - chr3_4:81489732-81489751 Msa0527220:CDS 40.0%
TAACCCATATTGAGTGAACC+AGG - chr3_4:81489762-81489781 Msa0527220:CDS 40.0%
GAGAGAGTTTGAGAGAAGTT+GGG + chr3_4:81490062-81490081 None:intergenic 40.0%
TTGCTTGCAATTCGCGAAAA+TGG + chr3_4:81490100-81490119 None:intergenic 40.0%
CTGTCGAGGAAAAATGAAAC+CGG + chr3_4:81490270-81490289 None:intergenic 40.0%
GTAAAAGACGTAAATGTCCC+TGG + chr3_4:81490301-81490320 None:intergenic 40.0%
! CGCAGCAGCAACTTTTTATT+TGG - chr3_4:81490399-81490418 Msa0527220:intron 40.0%
!! TGCTTAAGGAAAGTGTCACA+GGG + chr3_4:81490673-81490692 None:intergenic 40.0%
!! ATGCTTAAGGAAAGTGTCAC+AGG + chr3_4:81490674-81490693 None:intergenic 40.0%
GATCCGCATGCAAATAACAT+TGG - chr3_4:81490916-81490935 Msa0527220:CDS 40.0%
! TCGCCAATGTTATTTGCATG+CGG + chr3_4:81490922-81490941 None:intergenic 40.0%
AGCGAGAATGAAGGAATTGA+GGG - chr3_4:81490982-81491001 Msa0527220:intron 40.0%
TGCTTGGAACTCATAAGAAG+AGG - chr3_4:81491054-81491073 Msa0527220:intron 40.0%
TGTTGATGTGTCAGTGTTCA+GGG + chr3_4:81491245-81491264 None:intergenic 40.0%
TATATGTCACCGACACATGT+TGG - chr3_4:81491282-81491301 Msa0527220:CDS 40.0%
GGAAAAGAGATGCTGCAATT+TGG - chr3_4:81491456-81491475 Msa0527220:intron 40.0%
! GCATTGACCTTGGTATCAAA+AGG - chr3_4:81491529-81491548 Msa0527220:intron 40.0%
GATCAACGTGGCTATCAATT+GGG + chr3_4:81491632-81491651 None:intergenic 40.0%
! ATTGATTTACTGCGGCTGTA+TGG + chr3_4:81491654-81491673 None:intergenic 40.0%
TAAGGCTCTCTTTGGTTGTT+TGG - chr3_4:81491763-81491782 Msa0527220:intron 40.0%
GGATACAGGTGGAGATAAAT+GGG - chr3_4:81491958-81491977 Msa0527220:CDS 40.0%
ATCATAACCATGGCAAGGTT+AGG - chr3_4:81492340-81492359 Msa0527220:intron 40.0%
CCATTATAAGAGCAAGGACA+AGG + chr3_4:81492426-81492445 None:intergenic 40.0%
CCTTGTCCTTGCTCTTATAA+TGG - chr3_4:81492423-81492442 Msa0527220:intron 40.0%
! AATGGCAAGTATGGGACTTT+TGG - chr3_4:81492441-81492460 Msa0527220:CDS 40.0%
CGTCACATATAAAGTATGCC+TGG + chr3_4:81492507-81492526 None:intergenic 40.0%
CTGAACAAAAGAAGAGTCAG+TGG + chr3_4:81492581-81492600 None:intergenic 40.0%
!!! CACTGACTCTTCTTTTGTTC+AGG - chr3_4:81492579-81492598 Msa0527220:CDS 40.0%
TAATCCAAACTCCTGAGTAG+AGG + chr3_4:81492636-81492655 None:intergenic 40.0%
AAGTCTCCAACTATTCAGTC+AGG + chr3_4:81492827-81492846 None:intergenic 40.0%
CTTTGGACGATCATATCACA+TGG - chr3_4:81492896-81492915 Msa0527220:intron 40.0%
TGAGAAGGGCAAACAGATAA+GGG + chr3_4:81493281-81493300 None:intergenic 40.0%
TTGAGAAGGGCAAACAGATA+AGG + chr3_4:81493282-81493301 None:intergenic 40.0%
CCTTGCATTCTCATCTAAAG+GGG + chr3_4:81493395-81493414 None:intergenic 40.0%
CTCCTTGCATTCTCATCTAA+AGG + chr3_4:81493397-81493416 None:intergenic 40.0%
CATGTTTGATATTCGACAGG+TGG - chr3_4:81493448-81493467 Msa0527220:intron 40.0%
CCTCTGTTTCCAGTAAGATA+TGG + chr3_4:81493561-81493580 None:intergenic 40.0%
CCATATCTTACTGGAAACAG+AGG - chr3_4:81493558-81493577 Msa0527220:intron 40.0%
CTTACTGGAAACAGAGGAAA+AGG - chr3_4:81493564-81493583 Msa0527220:intron 40.0%
!! ACTTGGCTATTTTGTGTCGT+TGG - chr3_4:81493614-81493633 Msa0527220:intron 40.0%
AGAAACATAATCCCCATGTC+TGG + chr3_4:81493671-81493690 None:intergenic 40.0%
TTCGATCAATGTGGATGACA+AGG - chr3_4:81493717-81493736 Msa0527220:intron 40.0%
TCATTGAGGCCATTTATGCT+TGG - chr3_4:81493771-81493790 Msa0527220:intron 40.0%
!! GTTTTGGCAAACATTTGCTC+TGG - chr3_4:81493835-81493854 Msa0527220:five_prime_UTR 40.0%
TCTCTTTCCCGTCAATTTCA+TGG - chr3_4:81493996-81494015 Msa0527220:five_prime_UTR 40.0%
CAAGTTGCCATGAAATTGAC+GGG + chr3_4:81494006-81494025 None:intergenic 40.0%
CTCGTTTGTAGGGATAGATC+AGG - chr3_4:81489533-81489552 Msa0527220:three_prime_UTR 45.0%
GGAGAGAGTTTGAGAGAAGT+TGG + chr3_4:81490063-81490082 None:intergenic 45.0%
GCAATTCGCGAAAATGGCTT+TGG + chr3_4:81490094-81490113 None:intergenic 45.0%
TCTGCCTCTGCAATAACATC+AGG - chr3_4:81490177-81490196 Msa0527220:intron 45.0%
GCAATAACATCAGGACGCAT+CGG - chr3_4:81490186-81490205 Msa0527220:intron 45.0%
ACTACCAAGTTAACTGTCGC+CGG + chr3_4:81490238-81490257 None:intergenic 45.0%
! ACTTGGTAGTTAACTGCAGC+CGG - chr3_4:81490248-81490267 Msa0527220:intron 45.0%
! TTGCTGCTGCGTCAATTTTG+AGG + chr3_4:81490390-81490409 None:intergenic 45.0%
ATGCACTTGAGCGAGAATGA+AGG - chr3_4:81490973-81490992 Msa0527220:CDS 45.0%
GAGCGAGAATGAAGGAATTG+AGG - chr3_4:81490981-81491000 Msa0527220:intron 45.0%
GCGAGAATGAAGGAATTGAG+GGG - chr3_4:81490983-81491002 Msa0527220:intron 45.0%
!! CATAAGAAGAGGTGCTCAAC+AGG - chr3_4:81491065-81491084 Msa0527220:intron 45.0%
GATGAGACCAAGGAGAAGAT+TGG + chr3_4:81491110-81491129 None:intergenic 45.0%
AAGGGAGTCAACTGCATACA+AGG - chr3_4:81491141-81491160 Msa0527220:CDS 45.0%
! GTGTTGATGTGTCAGTGTTC+AGG + chr3_4:81491246-81491265 None:intergenic 45.0%
CCTTTCAACATCCTCTTTGC+GGG + chr3_4:81491385-81491404 None:intergenic 45.0%
CCCTTTCAACATCCTCTTTG+CGG + chr3_4:81491386-81491405 None:intergenic 45.0%
CCGCAAAGAGGATGTTGAAA+GGG - chr3_4:81491383-81491402 Msa0527220:intron 45.0%
TATTCCACGTTGCTGCCTTT+GGG - chr3_4:81491427-81491446 Msa0527220:intron 45.0%
! CTCTTTTCCTGACATCCCAA+AGG + chr3_4:81491445-81491464 None:intergenic 45.0%
!! CAATGCAAGCGTCGAGTATA+TGG + chr3_4:81491515-81491534 None:intergenic 45.0%
GGATCAACGTGGCTATCAAT+TGG + chr3_4:81491633-81491652 None:intergenic 45.0%
GCTCTCTTTGGTTGTTTGGT+GGG - chr3_4:81491767-81491786 Msa0527220:intron 45.0%
GGGATACAGGTGGAGATAAA+TGG - chr3_4:81491957-81491976 Msa0527220:CDS 45.0%
TCCTCTCAAGAAATGACACC+AGG - chr3_4:81492245-81492264 Msa0527220:intron 45.0%
!! TCCTGGTGTCATTTCTTGAG+AGG + chr3_4:81492249-81492268 None:intergenic 45.0%
CCATGGTTATGATCCTTGGA+AGG + chr3_4:81492333-81492352 None:intergenic 45.0%
CCTTCCAAGGATCATAACCA+TGG - chr3_4:81492330-81492349 Msa0527220:intron 45.0%
CTTGCCATGGTTATGATCCT+TGG + chr3_4:81492337-81492356 None:intergenic 45.0%
CAAGGATCATAACCATGGCA+AGG - chr3_4:81492335-81492354 Msa0527220:intron 45.0%
GGTCTGCTTCTGTTCAGAAT+TGG - chr3_4:81492361-81492380 Msa0527220:intron 45.0%
GGAAAACAACCTATAGCTGC+TGG - chr3_4:81492481-81492500 Msa0527220:CDS 45.0%
AATTCCTCCAACCTCTACTC+AGG - chr3_4:81492622-81492641 Msa0527220:five_prime_UTR 45.0%
TGTTCTTGCGAAGATTTGCC+AGG - chr3_4:81492695-81492714 Msa0527220:intron 45.0%
GTTCTTGCGAAGATTTGCCA+GGG - chr3_4:81492696-81492715 Msa0527220:intron 45.0%
ATCCATTGCTTAATCGGTGG+TGG - chr3_4:81492736-81492755 Msa0527220:intron 45.0%
GAAGGAGGATGAATGGTTGA+GGG + chr3_4:81492764-81492783 None:intergenic 45.0%
AGAGCTCAAATCCTAGAGCT+TGG - chr3_4:81492924-81492943 Msa0527220:intron 45.0%
AAAAGTCTGCACCAAGCTCT+AGG + chr3_4:81492938-81492957 None:intergenic 45.0%
!! AGAAGGTGCTTCTAGCAACT+TGG + chr3_4:81493114-81493133 None:intergenic 45.0%
GGGGTTCGAACATAAAAGGA+AGG + chr3_4:81493376-81493395 None:intergenic 45.0%
CCCCTTTAGATGAGAATGCA+AGG - chr3_4:81493392-81493411 Msa0527220:intron 45.0%
GAGCAAGCATTCTGACTGAT+TGG - chr3_4:81493414-81493433 Msa0527220:intron 45.0%
CTTAAAGCCAAAGAGGAGCT+TGG - chr3_4:81493494-81493513 Msa0527220:intron 45.0%
AACATAGCCAAGCTCCTCTT+TGG + chr3_4:81493504-81493523 None:intergenic 45.0%
ACAGAGGAAAAGGCAAACTC+TGG - chr3_4:81493574-81493593 Msa0527220:intron 45.0%
AGGAAAAGGCAAACTCTGGA+TGG - chr3_4:81493578-81493597 Msa0527220:intron 45.0%
GGAAAAGGCAAACTCTGGAT+GGG - chr3_4:81493579-81493598 Msa0527220:intron 45.0%
ATGGGCCTACCATCTATACT+TGG - chr3_4:81493597-81493616 Msa0527220:intron 45.0%
ATGACCTCACTATTCTGTGC+TGG - chr3_4:81493638-81493657 Msa0527220:intron 45.0%
GAAACCAGCACAGAATAGTG+AGG + chr3_4:81493645-81493664 None:intergenic 45.0%
ACATAATCCCCATGTCTGGA+AGG + chr3_4:81493667-81493686 None:intergenic 45.0%
ATCAATGTGGATGACAAGGC+TGG - chr3_4:81493721-81493740 Msa0527220:intron 45.0%
AGCCAGGTACCAAGCATAAA+TGG + chr3_4:81493783-81493802 None:intergenic 45.0%
ATGCTTGGTACCTGGCTAAA+AGG - chr3_4:81493786-81493805 Msa0527220:intron 45.0%
TGCTTGGTACCTGGCTAAAA+GGG - chr3_4:81493787-81493806 Msa0527220:intron 45.0%
!!! TCAATGCAAGAGGCTGGTTT+TGG - chr3_4:81493819-81493838 Msa0527220:five_prime_UTR 45.0%
!!! ATTTAATTTTATTGTTTTTT+GGG + chr3_4:81490844-81490863 None:intergenic 5.0%
!!! TATTTAATTTTATTGTTTTT+TGG + chr3_4:81490845-81490864 None:intergenic 5.0%
!! AAAAACAATAAAATTAAATA+AGG - chr3_4:81490845-81490864 Msa0527220:CDS 5.0%
!!! TACAAAATAAAAATTTTATT+AGG + chr3_4:81493199-81493218 None:intergenic 5.0%
GCATCAGCAGTTAACTGTCG+AGG + chr3_4:81489986-81490005 None:intergenic 50.0%
GCGTCCTGATGTTATTGCAG+AGG + chr3_4:81490184-81490203 None:intergenic 50.0%
CTGCCGCGGAAAAATGAAAC+CGG - chr3_4:81490216-81490235 Msa0527220:intron 50.0%
!!! TCGCCGGTTTCATTTTTCCG+CGG + chr3_4:81490222-81490241 None:intergenic 50.0%
GAAACCGGCGACAGTTAACT+TGG - chr3_4:81490231-81490250 Msa0527220:intron 50.0%
TCCTCGACAGTTAACTACCC+AGG - chr3_4:81490280-81490299 Msa0527220:intron 50.0%
CCTCGACAGTTAACTACCCA+GGG - chr3_4:81490281-81490300 Msa0527220:intron 50.0%
TCCTACGAATCCAAGTCCAC+CGG + chr3_4:81491025-81491044 None:intergenic 50.0%
AGAAGATTGGCGGAGGTCAA+AGG + chr3_4:81491097-81491116 None:intergenic 50.0%
GAGACCAAGGAGAAGATTGG+CGG + chr3_4:81491107-81491126 None:intergenic 50.0%
! ACAGGGTGTCCAACATGTGT+CGG + chr3_4:81491294-81491313 None:intergenic 50.0%
! GACACCCTGTTGTTGATGAG+AGG - chr3_4:81491304-81491323 Msa0527220:CDS 50.0%
CCCGCAAAGAGGATGTTGAA+AGG - chr3_4:81491382-81491401 Msa0527220:intron 50.0%
!! GATGTTGAAAGGGTACTCCG+TGG - chr3_4:81491393-81491412 Msa0527220:intron 50.0%
GTATTCCACGTTGCTGCCTT+TGG - chr3_4:81491426-81491445 Msa0527220:intron 50.0%
GGCTCTCTTTGGTTGTTTGG+TGG - chr3_4:81491766-81491785 Msa0527220:intron 50.0%
GTTCGTCCAGCTGCAATCTA+TGG - chr3_4:81492289-81492308 Msa0527220:intron 50.0%
TCCAGCTGCAATCTATGGAC+CGG - chr3_4:81492294-81492313 Msa0527220:intron 50.0%
AAGCAGACCTAACCTTGCCA+TGG + chr3_4:81492350-81492369 None:intergenic 50.0%
AACTCCTGAGTAGAGGTTGG+AGG + chr3_4:81492629-81492648 None:intergenic 50.0%
CCAAACTCCTGAGTAGAGGT+TGG + chr3_4:81492632-81492651 None:intergenic 50.0%
CCAACCTCTACTCAGGAGTT+TGG - chr3_4:81492629-81492648 Msa0527220:five_prime_UTR 50.0%
! AGCCACCACCGATTAAGCAA+TGG + chr3_4:81492741-81492760 None:intergenic 50.0%
GGAAGGAGGATGAATGGTTG+AGG + chr3_4:81492765-81492784 None:intergenic 50.0%
TCACTCGGAAGGAGGATGAA+TGG + chr3_4:81492771-81492790 None:intergenic 50.0%
CTGACCTTGAGTGCTTCACT+CGG + chr3_4:81492786-81492805 None:intergenic 50.0%
GAAGGGCAAACAGATAAGGG+TGG + chr3_4:81493278-81493297 None:intergenic 50.0%
!! TGCTGGTTTCCTTCCAGACA+TGG - chr3_4:81493655-81493674 Msa0527220:intron 50.0%
! GCTGGTTTCCTTCCAGACAT+GGG - chr3_4:81493656-81493675 Msa0527220:intron 50.0%
CTGGTTTCCTTCCAGACATG+GGG - chr3_4:81493657-81493676 Msa0527220:intron 50.0%
AACAGCTGTGCACGTCATTG+AGG - chr3_4:81493757-81493776 Msa0527220:intron 50.0%
GGCCATTTATGCTTGGTACC+TGG - chr3_4:81493778-81493797 Msa0527220:intron 50.0%
TTGGTACCTGGCTAAAAGGG+TGG - chr3_4:81493790-81493809 Msa0527220:intron 50.0%
GTGGATCCTGTCAATGCAAG+AGG - chr3_4:81493809-81493828 Msa0527220:five_prime_UTR 50.0%
ATCCTGTCAATGCAAGAGGC+TGG - chr3_4:81493813-81493832 Msa0527220:five_prime_UTR 50.0%
! AACCAGCCTCTTGCATTGAC+AGG + chr3_4:81493818-81493837 None:intergenic 50.0%
TCTCACAGGATTGTGGGGAC+TGG - chr3_4:81489737-81489756 Msa0527220:CDS 55.0%
CCCTGGGTAGTTAACTGTCG+AGG + chr3_4:81490284-81490303 None:intergenic 55.0%
GGGAAGAGCTTCGTAGTGAC+CGG - chr3_4:81491003-81491022 Msa0527220:intron 55.0%
AAGAGCTTCGTAGTGACCGG+TGG - chr3_4:81491006-81491025 Msa0527220:intron 55.0%
! TTCGTAGTGACCGGTGGACT+TGG - chr3_4:81491012-81491031 Msa0527220:intron 55.0%
! ACCGGTGGACTTGGATTCGT+AGG - chr3_4:81491021-81491040 Msa0527220:intron 55.0%
CGTAGGATCTGCTCTCTGCT+TGG - chr3_4:81491038-81491057 Msa0527220:intron 55.0%
ACCTCCGCCAATCTTCTCCT+TGG - chr3_4:81491100-81491119 Msa0527220:CDS 55.0%
ACCAAGGAGAAGATTGGCGG+AGG + chr3_4:81491104-81491123 None:intergenic 55.0%
AGGGGATGTTACCCGCAAAG+AGG - chr3_4:81491371-81491390 Msa0527220:intron 55.0%
GGAATACGCAGTCAGCACCA+CGG + chr3_4:81491413-81491432 None:intergenic 55.0%
ACATCCCAAAGGCAGCAACG+TGG + chr3_4:81491434-81491453 None:intergenic 55.0%
!! GTTGCTGCCTTTGGGATGTC+AGG - chr3_4:81491435-81491454 Msa0527220:intron 55.0%
! CTCGACGCTTGCATTGACCT+TGG - chr3_4:81491519-81491538 Msa0527220:intron 55.0%
TGCGGCTGTATGGATCAACG+TGG + chr3_4:81491644-81491663 None:intergenic 55.0%
CCAGCTGCAATCTATGGACC+GGG - chr3_4:81492295-81492314 Msa0527220:intron 55.0%
CAGCTGCAATCTATGGACCG+GGG - chr3_4:81492296-81492315 Msa0527220:intron 55.0%
AGCTGCAATCTATGGACCGG+GGG - chr3_4:81492297-81492316 Msa0527220:intron 55.0%
ACAACCTATAGCTGCTGGCC+AGG - chr3_4:81492486-81492505 Msa0527220:CDS 55.0%
TATGCCTGGCCAGCAGCTAT+AGG + chr3_4:81492493-81492512 None:intergenic 55.0%
TGAGTGCTTCACTCGGAAGG+AGG + chr3_4:81492779-81492798 None:intergenic 55.0%
CCTTGAGTGCTTCACTCGGA+AGG + chr3_4:81492782-81492801 None:intergenic 55.0%
! CCTTCCGAGTGAAGCACTCA+AGG - chr3_4:81492779-81492798 Msa0527220:intron 55.0%
GGAGCTTGGCTATGTTCCCA+TGG - chr3_4:81493508-81493527 Msa0527220:intron 55.0%
! CAGGATCCACCCTTTTAGCC+AGG + chr3_4:81493799-81493818 None:intergenic 55.0%
! GCATCGGCAGTTAACTGCCG+CGG - chr3_4:81490202-81490221 Msa0527220:intron 60.0%
CCCGGTCCATAGATTGCAGC+TGG + chr3_4:81492298-81492317 None:intergenic 60.0%
TCTATGGACCGGGGGAAGAC+AGG - chr3_4:81492305-81492324 Msa0527220:intron 60.0%
GGGAAGACAGGCACCTTCCA+AGG - chr3_4:81492317-81492336 Msa0527220:intron 60.0%
AGAATCCATCCCCTCTCGCG+AGG + chr3_4:81493537-81493556 None:intergenic 60.0%
!! GGAAGGTGCCTGTCTTCCCC+CGG + chr3_4:81492316-81492335 None:intergenic 65.0%
TCCCATGGTGACCTCGCGAG+AGG - chr3_4:81493523-81493542 Msa0527220:intron 65.0%
CCCTCTCGCGAGGTCACCAT+GGG + chr3_4:81493527-81493546 None:intergenic 65.0%
CCCATGGTGACCTCGCGAGA+GGG - chr3_4:81493524-81493543 Msa0527220:intron 65.0%
CCATGGTGACCTCGCGAGAG+GGG - chr3_4:81493525-81493544 Msa0527220:intron 65.0%
CCCCTCTCGCGAGGTCACCA+TGG + chr3_4:81493528-81493547 None:intergenic 70.0%
GGTGACCTCGCGAGAGGGGA+TGG - chr3_4:81493529-81493548 Msa0527220:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 81489308 81494286 81489308 ID=Msa0527220;Name=Msa0527220
chr3_4 mRNA 81489308 81494286 81489308 ID=Msa0527220-mRNA-1;Parent=Msa0527220;Name=Msa0527220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=542|1|1|1|0.8|0.66|6|385|479
chr3_4 exon 81489308 81490127 81489308 ID=Msa0527220-mRNA-1:exon:24637;Parent=Msa0527220-mRNA-1
chr3_4 exon 81490794 81490993 81490794 ID=Msa0527220-mRNA-1:exon:24636;Parent=Msa0527220-mRNA-1
chr3_4 exon 81491068 81491339 81491068 ID=Msa0527220-mRNA-1:exon:24635;Parent=Msa0527220-mRNA-1
chr3_4 exon 81491879 81492221 81491879 ID=Msa0527220-mRNA-1:exon:24634;Parent=Msa0527220-mRNA-1
chr3_4 exon 81492432 81492677 81492432 ID=Msa0527220-mRNA-1:exon:24633;Parent=Msa0527220-mRNA-1
chr3_4 exon 81493801 81494286 81493801 ID=Msa0527220-mRNA-1:exon:24632;Parent=Msa0527220-mRNA-1
chr3_4 five_prime_UTR 81493801 81494286 81493801 ID=Msa0527220-mRNA-1:five_prime_utr;Parent=Msa0527220-mRNA-1
chr3_4 five_prime_UTR 81492622 81492677 81492622 ID=Msa0527220-mRNA-1:five_prime_utr;Parent=Msa0527220-mRNA-1
chr3_4 CDS 81492432 81492621 81492432 ID=Msa0527220-mRNA-1:cds;Parent=Msa0527220-mRNA-1
chr3_4 CDS 81491879 81492221 81491879 ID=Msa0527220-mRNA-1:cds;Parent=Msa0527220-mRNA-1
chr3_4 CDS 81491068 81491339 81491068 ID=Msa0527220-mRNA-1:cds;Parent=Msa0527220-mRNA-1
chr3_4 CDS 81490794 81490993 81490794 ID=Msa0527220-mRNA-1:cds;Parent=Msa0527220-mRNA-1
chr3_4 CDS 81489693 81490127 81489693 ID=Msa0527220-mRNA-1:cds;Parent=Msa0527220-mRNA-1
chr3_4 three_prime_UTR 81489308 81489692 81489308 ID=Msa0527220-mRNA-1:three_prime_utr;Parent=Msa0527220-mRNA-1
Gene Sequence

>Msa0527220

ATGCACTTGAGCGAGAATGAAGGAATTGAGGGGAAGAGCTTCGTAGTGACCGGTGGACTTGGATTCGTAGGATCTGCTCTCTGCTTGGAACTCATAAGAAGAGGTGCTCAACAGGTTCGTGCCTTTGACCTCCGCCAATCTTCTCCTTGGTCTCATCTTCTTAAACTCAAGGGAGTCAACTGCATACAAGGGGATGTTACCCGCAAAGAGGATGTTGAAAGGGTACTCCGTGGTGCTGACTGCGTATTCCACGTTGCTGCCTTTGGGATGTCAGGAAAAGAGATGCTGCAATTTGGTCGAGTTGATGAAGTCAATATAAACGGGACATGCCATATACTCGACGCTTGCATTGACCTTGGTATCAAAAGGCTTGTTTATTGTAGCACATACAATGTTGTCTTTGGCGGTCAAAAAATACTTAACGGAAATGAGGCTTTGCCGTATTTCCCAATTGATAGCCACGTTGATCCATACAGCCGCAGTAAATCAATTGCTGAACAGTTGGTTCTAAAGAATAATGCCCGCACTCTCAAAAATGACACCAGGAATCATCTATACACTTGTGCTGTTCGTCCAGCTGCAATCTATGGACCGGGGGAAGACAGGCACCTTCCAAGGATCATAACCATGGCAAGGTTAGGTCTGCTTCTGTTCAGAATTGGTGACAAAACTGTAAAGTCAGATTGGGTTTTTGTTGATAACCTTGTCCTTGCTCTTATAATGGCAAGTATGGGACTTTTGGATGACAACAATGACAAAGGAAAACAACCTATAGCTGCTGGCCAGGCATACTTTATATGTGACGGTTCACCTGTCAATTCTTTTGAATTCCTCCAACCTCTACTCAGGAGTTTGGATTATGAACTACCAAAAAGATCTTTAACTCTTGAACATGCTCTTGTTCTTGCGAAGATTTGCCAGGGTGTTTATACGATCTTATATCCATTGCTTAATCGGTGGTGGCTCCCTCAACCATTCATCCTCCTTCCGAGTGAAGCACTCAAGGTGGGAGTGACTCACTATTTCTCTTATCTTAAAGCCAAAGAGGAGCTTGGCTATGTTCCCATGGTGACCTCGCGAGAGGGGATGGATTCTACCATATCTTACTGGAAACAGAGGAAAAGGCAAACTCTGGATGGGCCTACCATCTATACTTGGCTATTTTGTGTCGTTGGAATGACCTCACTATTCTGTGCTGGTTTCCTTCCAGACATGGGGATTATGTTTCTTCTCAGAGCTATATGTCTATTCGTCTTTCGATCAATGTGGATGACAAGGCTGGTATTCATTATAGCAACAGCTGTGCACGTCATTGAGGCCATTTATGCTTGGTACCTGGCTAAAAGGGTGGATCCTGTCAATGCAAGAGGCTGGTTTTGGCAAACATTTGCTCTGGGATTCTTTTCATTGCGTTTTCTGTTGAAAAGAGCAAGGGAATAA
Protein sequence

>Msa0527220

MHLSENEGIEGKSFVVTGGLGFVGSALCLELIRRGAQQVRAFDLRQSSPWSHLLKLKGVNCIQGDVTRKEDVERVLRGADCVFHVAAFGMSGKEMLQFGRVDEVNINGTCHILDACIDLGIKRLVYCSTYNVVFGGQKILNGNEALPYFPIDSHVDPYSRSKSIAEQLVLKNNARTLKNDTRNHLYTCAVRPAAIYGPGEDRHLPRIITMARLGLLLFRIGDKTVKSDWVFVDNLVLALIMASMGLLDDNNDKGKQPIAAGQAYFICDGSPVNSFEFLQPLLRSLDYELPKRSLTLEHALVLAKICQGVYTILYPLLNRWWLPQPFILLPSEALKVGVTHYFSYLKAKEELGYVPMVTSREGMDSTISYWKQRKRQTLDGPTIYTWLFCVVGMTSLFCAGFLPDMGIMFLLRAICLFVFRSMWMTRLVFIIATAVHVIEAIYAWYLAKRVDPVNARGWFWQTFALGFFSLRFLLKRARE*