Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139730 | AES94285.1 | 97.199 | 357 | 9 | 1 | 47 | 403 | 6 | 361 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139730 | G7JXC7 | 97.199 | 357 | 9 | 1 | 47 | 403 | 6 | 361 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139730 | Msa1132550 | 0.891946 | 2.495149e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139730 | MtrunA17_Chr5g0399351 | 97.159 | 352 | 9 | 1 | 52 | 403 | 1 | 351 | 0.0 | 674 |
| Msa0139730 | MtrunA17_Chr2g0317181 | 85.227 | 88 | 13 | 0 | 272 | 359 | 4 | 91 | 1.52e-42 | 144 |
| Msa0139730 | MtrunA17_Chr2g0317191 | 63.636 | 99 | 34 | 2 | 55 | 151 | 5 | 103 | 5.03e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139730 | AT5G05210.1 | 49.189 | 370 | 133 | 8 | 74 | 399 | 24 | 382 | 1.22e-90 | 279 |
| Msa0139730 | AT5G05210.2 | 49.189 | 370 | 133 | 8 | 74 | 399 | 16 | 374 | 2.03e-90 | 278 |
| Msa0139730 | AT2G27750.1 | 53.714 | 175 | 60 | 5 | 220 | 390 | 24 | 181 | 2.04e-44 | 152 |
Find 108 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAACCCATGTTATATTT+TGG | 0.153792 | 1_3:-73562516 | Msa0139730:three_prime_UTR |
| GTGATTGGGATTTAGAAATT+AGG | 0.196108 | 1_3:+73564571 | None:intergenic |
| TCACTAGAATACAGGCATTT+TGG | 0.215580 | 1_3:-73562456 | Msa0139730:three_prime_UTR |
| GCGGTGGATGACGGCGGGTT+CGG | 0.215825 | 1_3:+73564525 | None:intergenic |
| TAACGAGAAACCGTGGTTTC+AGG | 0.232330 | 1_3:-73563557 | Msa0139730:CDS |
| GCCTGTATTCTAGTGATAAA+TGG | 0.241539 | 1_3:+73562463 | None:intergenic |
| TGAACTTCTCAAGAAGAGTT+TGG | 0.258601 | 1_3:-73563431 | Msa0139730:CDS |
| AGAAGTTCAAGTGTGGTTAC+AGG | 0.290349 | 1_3:+73563445 | None:intergenic |
| GCTACAAGAGAAGGTGAAAA+AGG | 0.303960 | 1_3:-73563131 | Msa0139730:CDS |
| CGGTGGATGACGGCGGGTTC+GGG | 0.307231 | 1_3:+73564526 | None:intergenic |
| TGATTGGGATTTAGAAATTA+GGG | 0.336302 | 1_3:+73564572 | None:intergenic |
| TATCATCATGGCAGATTTAC+CGG | 0.336518 | 1_3:-73562393 | Msa0139730:three_prime_UTR |
| GCAGCAATGGACAGAGCTTC+AGG | 0.337717 | 1_3:-73562926 | Msa0139730:CDS |
| AGTGTGGTTACAGGCTTCTC+AGG | 0.342543 | 1_3:+73563454 | None:intergenic |
| GTTTGGTCACGTTAAACTTC+AGG | 0.346929 | 1_3:-73563080 | Msa0139730:CDS |
| GAACTTCTCAAGAAGAGTTT+GGG | 0.346980 | 1_3:-73563430 | Msa0139730:CDS |
| AGGTGCGGGCTTACTTTCAT+TGG | 0.357636 | 1_3:+73563162 | None:intergenic |
| CAAGCTTGCGATGAAGCCTT+TGG | 0.361638 | 1_3:+73563305 | None:intergenic |
| TCCATTTATCACTAGAATAC+AGG | 0.366047 | 1_3:-73562464 | Msa0139730:three_prime_UTR |
| ACAGAATATCAAGAAGTCTA+AGG | 0.367209 | 1_3:-73563491 | Msa0139730:CDS |
| CTATTGCGGCCGGGCTTTGA+AGG | 0.371671 | 1_3:-73562698 | Msa0139730:CDS |
| TTCTCTTGTAGCTTCTCATC+AGG | 0.381853 | 1_3:+73563142 | None:intergenic |
| CAAGAGAGGATATCATTATC+AGG | 0.385515 | 1_3:-73563212 | Msa0139730:CDS |
| AGTTGTTAATTACATATTGT+TGG | 0.390747 | 1_3:-73562425 | Msa0139730:three_prime_UTR |
| GGACAGAGCTTCAGGAATTA+AGG | 0.391083 | 1_3:-73562918 | Msa0139730:CDS |
| TGTTGATGTTGGTCAAGATT+TGG | 0.391866 | 1_3:-73563662 | Msa0139730:CDS |
| ACGGCGAAAGGCGGAGTGAT+TGG | 0.396018 | 1_3:+73564556 | None:intergenic |
| AAATAACGAGACCATACCTT+TGG | 0.402152 | 1_3:+73564496 | None:intergenic |
| AAGCCACAAGTTGAAATTGA+TGG | 0.403450 | 1_3:+73562577 | None:intergenic |
| GATAAAGAAAAGCATACATA+AGG | 0.405087 | 1_3:-73562876 | Msa0139730:CDS |
| CCTCCGATAACAATGCAAAA+AGG | 0.413586 | 1_3:+73562611 | None:intergenic |
| GCTTCAAATGAGCTTGTGTT+TGG | 0.418447 | 1_3:-73563097 | Msa0139730:CDS |
| TAATCTAATGGTTAATGAAC+CGG | 0.420372 | 1_3:+73562374 | None:intergenic |
| CGGCGAAAGGCGGAGTGATT+GGG | 0.426592 | 1_3:+73564557 | None:intergenic |
| GCAATAGCTTCACCCTTCTC+AGG | 0.428203 | 1_3:+73562968 | None:intergenic |
| AACTCGTAACTGTGCAGATC+CGG | 0.428390 | 1_3:-73563269 | Msa0139730:CDS |
| GGCCGGGCTTTGAAGGTCAC+AGG | 0.430067 | 1_3:-73562691 | Msa0139730:CDS |
| CCTTTGGCGAAGCTCTTCAT+AGG | 0.445722 | 1_3:+73563321 | None:intergenic |
| AACGAGAAACCGTGGTTTCA+GGG | 0.456991 | 1_3:-73563556 | Msa0139730:CDS |
| ATAAAGAAAAGCATACATAA+GGG | 0.460274 | 1_3:-73562875 | Msa0139730:CDS |
| GGGTGAAGCTATTGCTAAGA+AGG | 0.461254 | 1_3:-73562960 | Msa0139730:CDS |
| ATGCTGTTATAGGGAGACTT+TGG | 0.465023 | 1_3:-73563724 | Msa0139730:intron |
| ATACAAATAACATAATCTAA+TGG | 0.473511 | 1_3:+73562362 | None:intergenic |
| GTTGGCAGATAAAACTTAGC+TGG | 0.478956 | 1_3:+73563586 | None:intergenic |
| AGGCTTCATCGCAAGCTTGA+AGG | 0.479052 | 1_3:-73563301 | Msa0139730:CDS |
| TCGGGTCGACGTACGGCGAA+AGG | 0.481534 | 1_3:+73564544 | None:intergenic |
| CATCCATCAATTTCAACTTG+TGG | 0.483348 | 1_3:-73562580 | Msa0139730:three_prime_UTR |
| TGTAGCTTCTCATCAGGTGC+GGG | 0.484265 | 1_3:+73563148 | None:intergenic |
| GTTGCAGAGGTTGTTGATGT+TGG | 0.484416 | 1_3:-73563673 | Msa0139730:CDS |
| CTGATAATGATATCCTCTCT+TGG | 0.486659 | 1_3:+73563213 | None:intergenic |
| GGGAAGAGAGAGTTCAATCA+AGG | 0.493714 | 1_3:-73562820 | Msa0139730:CDS |
| AGGTGAGGAAGAAGAGGATG+TGG | 0.498717 | 1_3:-73563389 | Msa0139730:CDS |
| ACTTGAAAGGGCAAAGAAGT+TGG | 0.502213 | 1_3:-73563011 | Msa0139730:CDS |
| CGGAAAAGGCTGCTAAGAAG+AGG | 0.504510 | 1_3:-73563249 | Msa0139730:CDS |
| AAAGCACAAGGAACTTGAAA+GGG | 0.506359 | 1_3:-73563023 | Msa0139730:CDS |
| AATAACGAGACCATACCTTT+GGG | 0.506636 | 1_3:+73564497 | None:intergenic |
| GGCGGGTTCGGGTCGACGTA+CGG | 0.506837 | 1_3:+73564537 | None:intergenic |
| CCATCCAGCTCAGACACAAA+AGG | 0.508756 | 1_3:+73563361 | None:intergenic |
| GATGAAGATGAGGAAGCAAA+AGG | 0.510760 | 1_3:-73563698 | Msa0139730:CDS |
| TAACTGTGCAGATCCGGAAA+AGG | 0.514146 | 1_3:-73563263 | Msa0139730:CDS |
| TCAATCAAGGGATCAGTTGA+AGG | 0.518168 | 1_3:-73562807 | Msa0139730:CDS |
| AAGAAGCGGTGGATGACGGC+GGG | 0.518852 | 1_3:+73564520 | None:intergenic |
| GGCTTTGAAGGTCACAGGGA+AGG | 0.530107 | 1_3:-73562686 | Msa0139730:CDS |
| AGGCAGAGAAGCAAAAGAAA+AGG | 0.532776 | 1_3:-73562787 | Msa0139730:CDS |
| ACTTTGGAGTGATGAAGATG+AGG | 0.541362 | 1_3:-73563708 | Msa0139730:CDS |
| ACCGCTTCTTCCCAAAGGTA+TGG | 0.542345 | 1_3:-73564507 | Msa0139730:CDS |
| TCACGTTAAACTTCAGGATG+AGG | 0.542978 | 1_3:-73563074 | Msa0139730:CDS |
| GAATGAAGGTGAGGAAGAAG+AGG | 0.544065 | 1_3:-73563395 | Msa0139730:CDS |
| CAAAGCACAAGGAACTTGAA+AGG | 0.545046 | 1_3:-73563024 | Msa0139730:CDS |
| TGGGAAGAAGCGGTGGATGA+CGG | 0.547206 | 1_3:+73564516 | None:intergenic |
| GGAAGCATGGAAAGCAGCAA+TGG | 0.549880 | 1_3:-73562939 | Msa0139730:CDS |
| TTATCAATTTGGGATCGTCA+TGG | 0.557381 | 1_3:+73562894 | None:intergenic |
| GGATTAATGATAAGAAAATG+AGG | 0.557444 | 1_3:-73562745 | Msa0139730:CDS |
| GGTTTCTCGTTATCATCAGT+TGG | 0.560730 | 1_3:+73563568 | None:intergenic |
| TGGTTTGCATCATATCATCA+TGG | 0.561936 | 1_3:-73562405 | Msa0139730:three_prime_UTR |
| GAAGAAGAATGATCCTGAGA+AGG | 0.567162 | 1_3:-73562981 | Msa0139730:CDS |
| CTTCAGGATGAGGAAATGCT+AGG | 0.569079 | 1_3:-73563064 | Msa0139730:CDS |
| TCCCTGTGACCTTCAAAGCC+CGG | 0.571851 | 1_3:+73562689 | None:intergenic |
| TTGTAGCTTCTCATCAGGTG+CGG | 0.577217 | 1_3:+73563147 | None:intergenic |
| TTGTTGAGACCCTGAAACCA+CGG | 0.583522 | 1_3:+73563547 | None:intergenic |
| TGATGAGAAGCTACAAGAGA+AGG | 0.587083 | 1_3:-73563140 | Msa0139730:CDS |
| GTGTGGTTACAGGCTTCTCA+GGG | 0.588570 | 1_3:+73563455 | None:intergenic |
| ACCATACCTTTGGGAAGAAG+CGG | 0.591973 | 1_3:+73564506 | None:intergenic |
| GAAGCAAAAGGTTGTTGCAG+AGG | 0.592741 | 1_3:-73563686 | Msa0139730:CDS |
| TGAAAGGGCAAAGAAGTTGG+AGG | 0.598047 | 1_3:-73563008 | Msa0139730:CDS |
| ATCAGGATAATAAACGCAAG+AGG | 0.601271 | 1_3:-73563195 | Msa0139730:CDS |
| CTGAGCTGGATGGAGATGAT+CGG | 0.601585 | 1_3:-73563351 | Msa0139730:CDS |
| AAGAAGAATGATCCTGAGAA+GGG | 0.603235 | 1_3:-73562980 | Msa0139730:CDS |
| CATCCACCGCTTCTTCCCAA+AGG | 0.604710 | 1_3:-73564512 | Msa0139730:CDS |
| CTATTGCTAAGAAGGAAGCA+TGG | 0.605991 | 1_3:-73562952 | Msa0139730:CDS |
| GTAATTGCCAAAATATAACA+TGG | 0.609450 | 1_3:+73562509 | None:intergenic |
| GAAGAAGCGGTGGATGACGG+CGG | 0.614612 | 1_3:+73564519 | None:intergenic |
| CTTCTTGAGAAGTTCAAGTG+TGG | 0.616015 | 1_3:+73563438 | None:intergenic |
| TCTGCGAGACACAGATAATG+AGG | 0.617650 | 1_3:+73564602 | None:intergenic |
| ATACCTTTGGGAAGAAGCGG+TGG | 0.624169 | 1_3:+73564509 | None:intergenic |
| TAAAGAAAAGCATACATAAG+GGG | 0.624269 | 1_3:-73562874 | Msa0139730:CDS |
| TCAGGATAATAAACGCAAGA+GGG | 0.627512 | 1_3:-73563194 | Msa0139730:CDS |
| GGTCGACGTACGGCGAAAGG+CGG | 0.628320 | 1_3:+73564547 | None:intergenic |
| GGAAGAGAGAGTTCAATCAA+GGG | 0.629511 | 1_3:-73562819 | Msa0139730:CDS |
| CAACAAGAAACAGAAAGCAA+AGG | 0.638546 | 1_3:-73563530 | Msa0139730:CDS |
| GGAAAAGGCTGCTAAGAAGA+GGG | 0.647760 | 1_3:-73563248 | Msa0139730:CDS |
| GCCGGGCTTTGAAGGTCACA+GGG | 0.648501 | 1_3:-73562690 | Msa0139730:CDS |
| CCTATGAAGAGCTTCGCCAA+AGG | 0.661576 | 1_3:-73563321 | Msa0139730:CDS |
| AAGCTCATTTGAAGCCTCCG+CGG | 0.683230 | 1_3:+73563105 | None:intergenic |
| TAATTGCCAAAATATAACAT+GGG | 0.683860 | 1_3:+73562510 | None:intergenic |
| GAAGATAGAGACACCAAGAG+AGG | 0.685788 | 1_3:-73563226 | Msa0139730:CDS |
| GGTCAGATAATATAGCTGAG+AGG | 0.714827 | 1_3:-73562766 | Msa0139730:CDS |
| CTGATGATAACGAGAAACCG+TGG | 0.715203 | 1_3:-73563564 | Msa0139730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTTTAATTGGTTTT+AGG | - | chr1_3:73562655-73562674 | Msa0139730:exon | 15.0% |
| !!! | TTCTTTTTTAATTGGTTTTA+GGG | - | chr1_3:73562656-73562675 | Msa0139730:exon | 15.0% |
| !!! | ATTTATTTTTTTCTTCAGTA+TGG | + | chr1_3:73563068-73563087 | None:intergenic | 15.0% |
| !! | ATACAAATAACATAATCTAA+TGG | + | chr1_3:73564618-73564637 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTTAATTGGTTTT+AGG | - | chr1_3:73562655-73562674 | Msa0139730:exon | 15.0% |
| !!! | TTCTTTTTTAATTGGTTTTA+GGG | - | chr1_3:73562656-73562675 | Msa0139730:exon | 15.0% |
| !!! | ATTTATTTTTTTCTTCAGTA+TGG | + | chr1_3:73563068-73563087 | None:intergenic | 15.0% |
| !! | ATACAAATAACATAATCTAA+TGG | + | chr1_3:73564618-73564637 | None:intergenic | 15.0% |
| !!! | GCAAATGTTTCTTTTTTAAT+TGG | - | chr1_3:73562648-73562667 | Msa0139730:exon | 20.0% |
| !! | TAATACTAGTTATAGAGTTA+GGG | + | chr1_3:73562942-73562961 | None:intergenic | 20.0% |
| !!! | ATGCTTTTCTTTATCAATTT+GGG | + | chr1_3:73564096-73564115 | None:intergenic | 20.0% |
| !!! | TATGCTTTTCTTTATCAATT+TGG | + | chr1_3:73564097-73564116 | None:intergenic | 20.0% |
| !!! | ATAAAGAAAAGCATACATAA+GGG | - | chr1_3:73564102-73564121 | Msa0139730:intron | 20.0% |
| !!! | TATTAACCCATGTTATATTT+TGG | - | chr1_3:73564461-73564480 | Msa0139730:intron | 20.0% |
| !! | TAATTGCCAAAATATAACAT+GGG | + | chr1_3:73564470-73564489 | None:intergenic | 20.0% |
| !! | ATGGAAATAGTCAAAAAAAA+AGG | + | chr1_3:73564498-73564517 | None:intergenic | 20.0% |
| !! | AGTTGTTAATTACATATTGT+TGG | - | chr1_3:73564552-73564571 | Msa0139730:CDS | 20.0% |
| !!! | GCAAATGTTTCTTTTTTAAT+TGG | - | chr1_3:73562648-73562667 | Msa0139730:exon | 20.0% |
| !! | TAATACTAGTTATAGAGTTA+GGG | + | chr1_3:73562942-73562961 | None:intergenic | 20.0% |
| !!! | ATGCTTTTCTTTATCAATTT+GGG | + | chr1_3:73564096-73564115 | None:intergenic | 20.0% |
| !!! | TATGCTTTTCTTTATCAATT+TGG | + | chr1_3:73564097-73564116 | None:intergenic | 20.0% |
| !!! | ATAAAGAAAAGCATACATAA+GGG | - | chr1_3:73564102-73564121 | Msa0139730:intron | 20.0% |
| !!! | TATTAACCCATGTTATATTT+TGG | - | chr1_3:73564461-73564480 | Msa0139730:intron | 20.0% |
| !! | TAATTGCCAAAATATAACAT+GGG | + | chr1_3:73564470-73564489 | None:intergenic | 20.0% |
| !! | ATGGAAATAGTCAAAAAAAA+AGG | + | chr1_3:73564498-73564517 | None:intergenic | 20.0% |
| !! | AGTTGTTAATTACATATTGT+TGG | - | chr1_3:73564552-73564571 | Msa0139730:CDS | 20.0% |
| ! | TGATTGGGATTTAGAAATTA+GGG | + | chr1_3:73562408-73562427 | None:intergenic | 25.0% |
| ! | AACCTTATACATAACATAAG+CGG | + | chr1_3:73562720-73562739 | None:intergenic | 25.0% |
| ! | GTAATACTAGTTATAGAGTT+AGG | + | chr1_3:73562943-73562962 | None:intergenic | 25.0% |
| ! | AGTATTACTATACATATTGC+TGG | - | chr1_3:73562955-73562974 | Msa0139730:CDS | 25.0% |
| !! | TCTGTGTAATTTTCAAATTC+TGG | - | chr1_3:73563138-73563157 | Msa0139730:CDS | 25.0% |
| !! | GATAAAGAAAAGCATACATA+AGG | - | chr1_3:73564101-73564120 | Msa0139730:intron | 25.0% |
| !! | TAAAGAAAAGCATACATAAG+GGG | - | chr1_3:73564103-73564122 | Msa0139730:intron | 25.0% |
| ! | AAGAAAAAAATGCAGAGAAA+TGG | - | chr1_3:73564136-73564155 | Msa0139730:intron | 25.0% |
| ! | AGAAAAAAATGCAGAGAAAT+GGG | - | chr1_3:73564137-73564156 | Msa0139730:intron | 25.0% |
| ! | GGATTAATGATAAGAAAATG+AGG | - | chr1_3:73564232-73564251 | Msa0139730:intron | 25.0% |
| ! | GTAATTGCCAAAATATAACA+TGG | + | chr1_3:73564471-73564490 | None:intergenic | 25.0% |
| ! | TAATCTAATGGTTAATGAAC+CGG | + | chr1_3:73564606-73564625 | None:intergenic | 25.0% |
| ! | TGATTGGGATTTAGAAATTA+GGG | + | chr1_3:73562408-73562427 | None:intergenic | 25.0% |
| ! | AACCTTATACATAACATAAG+CGG | + | chr1_3:73562720-73562739 | None:intergenic | 25.0% |
| ! | GTAATACTAGTTATAGAGTT+AGG | + | chr1_3:73562943-73562962 | None:intergenic | 25.0% |
| ! | AGTATTACTATACATATTGC+TGG | - | chr1_3:73562955-73562974 | Msa0139730:CDS | 25.0% |
| !! | TCTGTGTAATTTTCAAATTC+TGG | - | chr1_3:73563138-73563157 | Msa0139730:CDS | 25.0% |
| !! | GATAAAGAAAAGCATACATA+AGG | - | chr1_3:73564101-73564120 | Msa0139730:intron | 25.0% |
| !! | TAAAGAAAAGCATACATAAG+GGG | - | chr1_3:73564103-73564122 | Msa0139730:intron | 25.0% |
| ! | AAGAAAAAAATGCAGAGAAA+TGG | - | chr1_3:73564136-73564155 | Msa0139730:intron | 25.0% |
| ! | AGAAAAAAATGCAGAGAAAT+GGG | - | chr1_3:73564137-73564156 | Msa0139730:intron | 25.0% |
| ! | GGATTAATGATAAGAAAATG+AGG | - | chr1_3:73564232-73564251 | Msa0139730:intron | 25.0% |
| ! | GTAATTGCCAAAATATAACA+TGG | + | chr1_3:73564471-73564490 | None:intergenic | 25.0% |
| ! | TAATCTAATGGTTAATGAAC+CGG | + | chr1_3:73564606-73564625 | None:intergenic | 25.0% |
| GTGATTGGGATTTAGAAATT+AGG | + | chr1_3:73562409-73562428 | None:intergenic | 30.0% | |
| GAAGAAAATAAAGAACGAAG+TGG | + | chr1_3:73562569-73562588 | None:intergenic | 30.0% | |
| AACCGCTTATGTTATGTATA+AGG | - | chr1_3:73562715-73562734 | Msa0139730:CDS | 30.0% | |
| ATGTATGCTATAAGCTAGAT+TGG | - | chr1_3:73562790-73562809 | Msa0139730:CDS | 30.0% | |
| TTAAATGTAATCACATGTGC+TGG | - | chr1_3:73563091-73563110 | Msa0139730:CDS | 30.0% | |
| TTATTCTCTCATGCTGTTAT+AGG | - | chr1_3:73563243-73563262 | Msa0139730:CDS | 30.0% | |
| TATTCTCTCATGCTGTTATA+GGG | - | chr1_3:73563244-73563263 | Msa0139730:CDS | 30.0% | |
| AACCAATTTGTCGAAAAAAC+TGG | + | chr1_3:73563362-73563381 | None:intergenic | 30.0% | |
| ACAGAATATCAAGAAGTCTA+AGG | - | chr1_3:73563486-73563505 | Msa0139730:CDS | 30.0% | |
| GAGAAAAATTTCAAAGCACA+AGG | - | chr1_3:73563942-73563961 | Msa0139730:intron | 30.0% | |
| !!! | GGTTTTATTAATAGCAGTTC+TGG | - | chr1_3:73564312-73564331 | Msa0139730:intron | 30.0% |
| ! | GTACCTTTTTGCATTGTTAT+CGG | - | chr1_3:73564363-73564382 | Msa0139730:intron | 30.0% |
| TCCATTTATCACTAGAATAC+AGG | - | chr1_3:73564513-73564532 | Msa0139730:CDS | 30.0% | |
| GTGATTGGGATTTAGAAATT+AGG | + | chr1_3:73562409-73562428 | None:intergenic | 30.0% | |
| GAAGAAAATAAAGAACGAAG+TGG | + | chr1_3:73562569-73562588 | None:intergenic | 30.0% | |
| AACCGCTTATGTTATGTATA+AGG | - | chr1_3:73562715-73562734 | Msa0139730:CDS | 30.0% | |
| ATGTATGCTATAAGCTAGAT+TGG | - | chr1_3:73562790-73562809 | Msa0139730:CDS | 30.0% | |
| TTAAATGTAATCACATGTGC+TGG | - | chr1_3:73563091-73563110 | Msa0139730:CDS | 30.0% | |
| TTATTCTCTCATGCTGTTAT+AGG | - | chr1_3:73563243-73563262 | Msa0139730:CDS | 30.0% | |
| TATTCTCTCATGCTGTTATA+GGG | - | chr1_3:73563244-73563263 | Msa0139730:CDS | 30.0% | |
| AACCAATTTGTCGAAAAAAC+TGG | + | chr1_3:73563362-73563381 | None:intergenic | 30.0% | |
| ACAGAATATCAAGAAGTCTA+AGG | - | chr1_3:73563486-73563505 | Msa0139730:CDS | 30.0% | |
| GAGAAAAATTTCAAAGCACA+AGG | - | chr1_3:73563942-73563961 | Msa0139730:intron | 30.0% | |
| !!! | GGTTTTATTAATAGCAGTTC+TGG | - | chr1_3:73564312-73564331 | Msa0139730:intron | 30.0% |
| ! | GTACCTTTTTGCATTGTTAT+CGG | - | chr1_3:73564363-73564382 | Msa0139730:intron | 30.0% |
| TCCATTTATCACTAGAATAC+AGG | - | chr1_3:73564513-73564532 | Msa0139730:CDS | 30.0% | |
| AATAACGAGACCATACCTTT+GGG | + | chr1_3:73562483-73562502 | None:intergenic | 35.0% | |
| AAATAACGAGACCATACCTT+TGG | + | chr1_3:73562484-73562503 | None:intergenic | 35.0% | |
| !!! | AATTGGTTTTAGGGTCTGTT+TGG | - | chr1_3:73562665-73562684 | Msa0139730:CDS | 35.0% |
| ! | TAAGCTTTGTGAGACTGTTT+GGG | + | chr1_3:73562881-73562900 | None:intergenic | 35.0% |
| ! | ATAAGCTTTGTGAGACTGTT+TGG | + | chr1_3:73562882-73562901 | None:intergenic | 35.0% |
| TTATAGAGTTAGGGACTGTT+TGG | + | chr1_3:73562933-73562952 | None:intergenic | 35.0% | |
| ACTATACATATTGCTGGCAA+AGG | - | chr1_3:73562961-73562980 | Msa0139730:CDS | 35.0% | |
| TGTTGATGTTGGTCAAGATT+TGG | - | chr1_3:73563315-73563334 | Msa0139730:CDS | 35.0% | |
| !!! | TGCCAGTTTTTTCGACAAAT+TGG | - | chr1_3:73563357-73563376 | Msa0139730:CDS | 35.0% |
| CAACAAGAAACAGAAAGCAA+AGG | - | chr1_3:73563447-73563466 | Msa0139730:CDS | 35.0% | |
| TGAACTTCTCAAGAAGAGTT+TGG | - | chr1_3:73563546-73563565 | Msa0139730:CDS | 35.0% | |
| GAACTTCTCAAGAAGAGTTT+GGG | - | chr1_3:73563547-73563566 | Msa0139730:CDS | 35.0% | |
| GGAAAAGAAAAAGCGAATGA+AGG | - | chr1_3:73563568-73563587 | Msa0139730:CDS | 35.0% | |
| ! | CTGATAATGATATCCTCTCT+TGG | + | chr1_3:73563767-73563786 | None:intergenic | 35.0% |
| CAAGAGAGGATATCATTATC+AGG | - | chr1_3:73563765-73563784 | Msa0139730:intron | 35.0% | |
| ATCAGGATAATAAACGCAAG+AGG | - | chr1_3:73563782-73563801 | Msa0139730:intron | 35.0% | |
| TCAGGATAATAAACGCAAGA+GGG | - | chr1_3:73563783-73563802 | Msa0139730:intron | 35.0% | |
| AAAGCACAAGGAACTTGAAA+GGG | - | chr1_3:73563954-73563973 | Msa0139730:intron | 35.0% | |
| AAGAAGAATGATCCTGAGAA+GGG | - | chr1_3:73563997-73564016 | Msa0139730:intron | 35.0% | |
| ! | TTATCAATTTGGGATCGTCA+TGG | + | chr1_3:73564086-73564105 | None:intergenic | 35.0% |
| AGAGAGAGAAAAAGCTATTG+CGG | - | chr1_3:73564265-73564284 | Msa0139730:intron | 35.0% | |
| CATCCATCAATTTCAACTTG+TGG | - | chr1_3:73564397-73564416 | Msa0139730:intron | 35.0% | |
| ! | AAGCCACAAGTTGAAATTGA+TGG | + | chr1_3:73564403-73564422 | None:intergenic | 35.0% |
| GCCTGTATTCTAGTGATAAA+TGG | + | chr1_3:73564517-73564536 | None:intergenic | 35.0% | |
| ! | TCACTAGAATACAGGCATTT+TGG | - | chr1_3:73564521-73564540 | Msa0139730:CDS | 35.0% |
| ! | TGGTTTGCATCATATCATCA+TGG | - | chr1_3:73564572-73564591 | Msa0139730:CDS | 35.0% |
| TATCATCATGGCAGATTTAC+CGG | - | chr1_3:73564584-73564603 | Msa0139730:CDS | 35.0% | |
| AATAACGAGACCATACCTTT+GGG | + | chr1_3:73562483-73562502 | None:intergenic | 35.0% | |
| AAATAACGAGACCATACCTT+TGG | + | chr1_3:73562484-73562503 | None:intergenic | 35.0% | |
| !!! | AATTGGTTTTAGGGTCTGTT+TGG | - | chr1_3:73562665-73562684 | Msa0139730:CDS | 35.0% |
| ! | TAAGCTTTGTGAGACTGTTT+GGG | + | chr1_3:73562881-73562900 | None:intergenic | 35.0% |
| ! | ATAAGCTTTGTGAGACTGTT+TGG | + | chr1_3:73562882-73562901 | None:intergenic | 35.0% |
| TTATAGAGTTAGGGACTGTT+TGG | + | chr1_3:73562933-73562952 | None:intergenic | 35.0% | |
| ACTATACATATTGCTGGCAA+AGG | - | chr1_3:73562961-73562980 | Msa0139730:CDS | 35.0% | |
| TGTTGATGTTGGTCAAGATT+TGG | - | chr1_3:73563315-73563334 | Msa0139730:CDS | 35.0% | |
| !!! | TGCCAGTTTTTTCGACAAAT+TGG | - | chr1_3:73563357-73563376 | Msa0139730:CDS | 35.0% |
| CAACAAGAAACAGAAAGCAA+AGG | - | chr1_3:73563447-73563466 | Msa0139730:CDS | 35.0% | |
| TGAACTTCTCAAGAAGAGTT+TGG | - | chr1_3:73563546-73563565 | Msa0139730:CDS | 35.0% | |
| GAACTTCTCAAGAAGAGTTT+GGG | - | chr1_3:73563547-73563566 | Msa0139730:CDS | 35.0% | |
| GGAAAAGAAAAAGCGAATGA+AGG | - | chr1_3:73563568-73563587 | Msa0139730:CDS | 35.0% | |
| ! | CTGATAATGATATCCTCTCT+TGG | + | chr1_3:73563767-73563786 | None:intergenic | 35.0% |
| CAAGAGAGGATATCATTATC+AGG | - | chr1_3:73563765-73563784 | Msa0139730:intron | 35.0% | |
| ATCAGGATAATAAACGCAAG+AGG | - | chr1_3:73563782-73563801 | Msa0139730:intron | 35.0% | |
| TCAGGATAATAAACGCAAGA+GGG | - | chr1_3:73563783-73563802 | Msa0139730:intron | 35.0% | |
| AAAGCACAAGGAACTTGAAA+GGG | - | chr1_3:73563954-73563973 | Msa0139730:intron | 35.0% | |
| AAGAAGAATGATCCTGAGAA+GGG | - | chr1_3:73563997-73564016 | Msa0139730:intron | 35.0% | |
| ! | TTATCAATTTGGGATCGTCA+TGG | + | chr1_3:73564086-73564105 | None:intergenic | 35.0% |
| AGAGAGAGAAAAAGCTATTG+CGG | - | chr1_3:73564265-73564284 | Msa0139730:intron | 35.0% | |
| CATCCATCAATTTCAACTTG+TGG | - | chr1_3:73564397-73564416 | Msa0139730:intron | 35.0% | |
| ! | AAGCCACAAGTTGAAATTGA+TGG | + | chr1_3:73564403-73564422 | None:intergenic | 35.0% |
| GCCTGTATTCTAGTGATAAA+TGG | + | chr1_3:73564517-73564536 | None:intergenic | 35.0% | |
| ! | TCACTAGAATACAGGCATTT+TGG | - | chr1_3:73564521-73564540 | Msa0139730:CDS | 35.0% |
| ! | TGGTTTGCATCATATCATCA+TGG | - | chr1_3:73564572-73564591 | Msa0139730:CDS | 35.0% |
| TATCATCATGGCAGATTTAC+CGG | - | chr1_3:73564584-73564603 | Msa0139730:CDS | 35.0% | |
| AGTGCTTTGTAGGAATTCAG+AGG | + | chr1_3:73563009-73563028 | None:intergenic | 40.0% | |
| ! | TGTCTGTGATAGTGCTTTGT+AGG | + | chr1_3:73563019-73563038 | None:intergenic | 40.0% |
| ATGCTGTTATAGGGAGACTT+TGG | - | chr1_3:73563253-73563272 | Msa0139730:CDS | 40.0% | |
| !! | ACTTTGGAGTGATGAAGATG+AGG | - | chr1_3:73563269-73563288 | Msa0139730:CDS | 40.0% |
| GATGAAGATGAGGAAGCAAA+AGG | - | chr1_3:73563279-73563298 | Msa0139730:CDS | 40.0% | |
| GTTGGCAGATAAAACTTAGC+TGG | + | chr1_3:73563394-73563413 | None:intergenic | 40.0% | |
| GGTTTCTCGTTATCATCAGT+TGG | + | chr1_3:73563412-73563431 | None:intergenic | 40.0% | |
| AGAAGTTCAAGTGTGGTTAC+AGG | + | chr1_3:73563535-73563554 | None:intergenic | 40.0% | |
| CTTCTTGAGAAGTTCAAGTG+TGG | + | chr1_3:73563542-73563561 | None:intergenic | 40.0% | |
| AGAAAAAGCGAATGAAGGTG+AGG | - | chr1_3:73563573-73563592 | Msa0139730:CDS | 40.0% | |
| ! | ATCGCAAGCTTGAAGGTTTT+CGG | - | chr1_3:73563683-73563702 | Msa0139730:CDS | 40.0% |
| TTCTCTTGTAGCTTCTCATC+AGG | + | chr1_3:73563838-73563857 | None:intergenic | 40.0% | |
| TGATGAGAAGCTACAAGAGA+AGG | - | chr1_3:73563837-73563856 | Msa0139730:intron | 40.0% | |
| GCTACAAGAGAAGGTGAAAA+AGG | - | chr1_3:73563846-73563865 | Msa0139730:intron | 40.0% | |
| GCTTCAAATGAGCTTGTGTT+TGG | - | chr1_3:73563880-73563899 | Msa0139730:intron | 40.0% | |
| GTTTGGTCACGTTAAACTTC+AGG | - | chr1_3:73563897-73563916 | Msa0139730:intron | 40.0% | |
| TCACGTTAAACTTCAGGATG+AGG | - | chr1_3:73563903-73563922 | Msa0139730:intron | 40.0% | |
| CAAAGCACAAGGAACTTGAA+AGG | - | chr1_3:73563953-73563972 | Msa0139730:intron | 40.0% | |
| ACTTGAAAGGGCAAAGAAGT+TGG | - | chr1_3:73563966-73563985 | Msa0139730:intron | 40.0% | |
| GAAGAAGAATGATCCTGAGA+AGG | - | chr1_3:73563996-73564015 | Msa0139730:intron | 40.0% | |
| CTATTGCTAAGAAGGAAGCA+TGG | - | chr1_3:73564025-73564044 | Msa0139730:intron | 40.0% | |
| GGAAGAGAGAGTTCAATCAA+GGG | - | chr1_3:73564158-73564177 | Msa0139730:intron | 40.0% | |
| TCAATCAAGGGATCAGTTGA+AGG | - | chr1_3:73564170-73564189 | Msa0139730:intron | 40.0% | |
| AGGCAGAGAAGCAAAAGAAA+AGG | - | chr1_3:73564190-73564209 | Msa0139730:intron | 40.0% | |
| GGTCAGATAATATAGCTGAG+AGG | - | chr1_3:73564211-73564230 | Msa0139730:intron | 40.0% | |
| CCTCCGATAACAATGCAAAA+AGG | + | chr1_3:73564369-73564388 | None:intergenic | 40.0% | |
| ! | CCTTTTTGCATTGTTATCGG+AGG | - | chr1_3:73564366-73564385 | Msa0139730:intron | 40.0% |
| AGTGCTTTGTAGGAATTCAG+AGG | + | chr1_3:73563009-73563028 | None:intergenic | 40.0% | |
| ! | TGTCTGTGATAGTGCTTTGT+AGG | + | chr1_3:73563019-73563038 | None:intergenic | 40.0% |
| ATGCTGTTATAGGGAGACTT+TGG | - | chr1_3:73563253-73563272 | Msa0139730:CDS | 40.0% | |
| !! | ACTTTGGAGTGATGAAGATG+AGG | - | chr1_3:73563269-73563288 | Msa0139730:CDS | 40.0% |
| GATGAAGATGAGGAAGCAAA+AGG | - | chr1_3:73563279-73563298 | Msa0139730:CDS | 40.0% | |
| GTTGGCAGATAAAACTTAGC+TGG | + | chr1_3:73563394-73563413 | None:intergenic | 40.0% | |
| GGTTTCTCGTTATCATCAGT+TGG | + | chr1_3:73563412-73563431 | None:intergenic | 40.0% | |
| AGAAGTTCAAGTGTGGTTAC+AGG | + | chr1_3:73563535-73563554 | None:intergenic | 40.0% | |
| CTTCTTGAGAAGTTCAAGTG+TGG | + | chr1_3:73563542-73563561 | None:intergenic | 40.0% | |
| AGAAAAAGCGAATGAAGGTG+AGG | - | chr1_3:73563573-73563592 | Msa0139730:CDS | 40.0% | |
| ! | ATCGCAAGCTTGAAGGTTTT+CGG | - | chr1_3:73563683-73563702 | Msa0139730:CDS | 40.0% |
| TTCTCTTGTAGCTTCTCATC+AGG | + | chr1_3:73563838-73563857 | None:intergenic | 40.0% | |
| TGATGAGAAGCTACAAGAGA+AGG | - | chr1_3:73563837-73563856 | Msa0139730:intron | 40.0% | |
| GCTACAAGAGAAGGTGAAAA+AGG | - | chr1_3:73563846-73563865 | Msa0139730:intron | 40.0% | |
| GCTTCAAATGAGCTTGTGTT+TGG | - | chr1_3:73563880-73563899 | Msa0139730:intron | 40.0% | |
| GTTTGGTCACGTTAAACTTC+AGG | - | chr1_3:73563897-73563916 | Msa0139730:intron | 40.0% | |
| TCACGTTAAACTTCAGGATG+AGG | - | chr1_3:73563903-73563922 | Msa0139730:intron | 40.0% | |
| CAAAGCACAAGGAACTTGAA+AGG | - | chr1_3:73563953-73563972 | Msa0139730:intron | 40.0% | |
| ACTTGAAAGGGCAAAGAAGT+TGG | - | chr1_3:73563966-73563985 | Msa0139730:intron | 40.0% | |
| GAAGAAGAATGATCCTGAGA+AGG | - | chr1_3:73563996-73564015 | Msa0139730:intron | 40.0% | |
| CTATTGCTAAGAAGGAAGCA+TGG | - | chr1_3:73564025-73564044 | Msa0139730:intron | 40.0% | |
| GGAAGAGAGAGTTCAATCAA+GGG | - | chr1_3:73564158-73564177 | Msa0139730:intron | 40.0% | |
| TCAATCAAGGGATCAGTTGA+AGG | - | chr1_3:73564170-73564189 | Msa0139730:intron | 40.0% | |
| AGGCAGAGAAGCAAAAGAAA+AGG | - | chr1_3:73564190-73564209 | Msa0139730:intron | 40.0% | |
| GGTCAGATAATATAGCTGAG+AGG | - | chr1_3:73564211-73564230 | Msa0139730:intron | 40.0% | |
| CCTCCGATAACAATGCAAAA+AGG | + | chr1_3:73564369-73564388 | None:intergenic | 40.0% | |
| ! | CCTTTTTGCATTGTTATCGG+AGG | - | chr1_3:73564366-73564385 | Msa0139730:intron | 40.0% |
| TCTGCGAGACACAGATAATG+AGG | + | chr1_3:73562378-73562397 | None:intergenic | 45.0% | |
| ! | ACCATACCTTTGGGAAGAAG+CGG | + | chr1_3:73562474-73562493 | None:intergenic | 45.0% |
| GAAGCAAAAGGTTGTTGCAG+AGG | - | chr1_3:73563291-73563310 | Msa0139730:CDS | 45.0% | |
| GTTGCAGAGGTTGTTGATGT+TGG | - | chr1_3:73563304-73563323 | Msa0139730:CDS | 45.0% | |
| ! | CTGATGATAACGAGAAACCG+TGG | - | chr1_3:73563413-73563432 | Msa0139730:CDS | 45.0% |
| TAACGAGAAACCGTGGTTTC+AGG | - | chr1_3:73563420-73563439 | Msa0139730:CDS | 45.0% | |
| AACGAGAAACCGTGGTTTCA+GGG | - | chr1_3:73563421-73563440 | Msa0139730:CDS | 45.0% | |
| TTGTTGAGACCCTGAAACCA+CGG | + | chr1_3:73563433-73563452 | None:intergenic | 45.0% | |
| GAATGAAGGTGAGGAAGAAG+AGG | - | chr1_3:73563582-73563601 | Msa0139730:CDS | 45.0% | |
| ! | TAAGCCTTTTGTGTCTGAGC+TGG | - | chr1_3:73563612-73563631 | Msa0139730:CDS | 45.0% |
| AACTCGTAACTGTGCAGATC+CGG | - | chr1_3:73563708-73563727 | Msa0139730:CDS | 45.0% | |
| TAACTGTGCAGATCCGGAAA+AGG | - | chr1_3:73563714-73563733 | Msa0139730:CDS | 45.0% | |
| ! | CTCTTCTTAGCAGCCTTTTC+CGG | + | chr1_3:73563730-73563749 | None:intergenic | 45.0% |
| GGAAAAGGCTGCTAAGAAGA+GGG | - | chr1_3:73563729-73563748 | Msa0139730:intron | 45.0% | |
| GAAGATAGAGACACCAAGAG+AGG | - | chr1_3:73563751-73563770 | Msa0139730:intron | 45.0% | |
| TTGTAGCTTCTCATCAGGTG+CGG | + | chr1_3:73563833-73563852 | None:intergenic | 45.0% | |
| CTTCAGGATGAGGAAATGCT+AGG | - | chr1_3:73563913-73563932 | Msa0139730:intron | 45.0% | |
| TGAAAGGGCAAAGAAGTTGG+AGG | - | chr1_3:73563969-73563988 | Msa0139730:intron | 45.0% | |
| GGGTGAAGCTATTGCTAAGA+AGG | - | chr1_3:73564017-73564036 | Msa0139730:intron | 45.0% | |
| GGACAGAGCTTCAGGAATTA+AGG | - | chr1_3:73564059-73564078 | Msa0139730:intron | 45.0% | |
| GGGAAGAGAGAGTTCAATCA+AGG | - | chr1_3:73564157-73564176 | Msa0139730:intron | 45.0% | |
| AGAGAAAAAGCTATTGCGGC+CGG | - | chr1_3:73564269-73564288 | Msa0139730:intron | 45.0% | |
| TCTGCGAGACACAGATAATG+AGG | + | chr1_3:73562378-73562397 | None:intergenic | 45.0% | |
| ! | ACCATACCTTTGGGAAGAAG+CGG | + | chr1_3:73562474-73562493 | None:intergenic | 45.0% |
| GAAGCAAAAGGTTGTTGCAG+AGG | - | chr1_3:73563291-73563310 | Msa0139730:CDS | 45.0% | |
| GTTGCAGAGGTTGTTGATGT+TGG | - | chr1_3:73563304-73563323 | Msa0139730:CDS | 45.0% | |
| ! | CTGATGATAACGAGAAACCG+TGG | - | chr1_3:73563413-73563432 | Msa0139730:CDS | 45.0% |
| TAACGAGAAACCGTGGTTTC+AGG | - | chr1_3:73563420-73563439 | Msa0139730:CDS | 45.0% | |
| AACGAGAAACCGTGGTTTCA+GGG | - | chr1_3:73563421-73563440 | Msa0139730:CDS | 45.0% | |
| TTGTTGAGACCCTGAAACCA+CGG | + | chr1_3:73563433-73563452 | None:intergenic | 45.0% | |
| GAATGAAGGTGAGGAAGAAG+AGG | - | chr1_3:73563582-73563601 | Msa0139730:CDS | 45.0% | |
| ! | TAAGCCTTTTGTGTCTGAGC+TGG | - | chr1_3:73563612-73563631 | Msa0139730:CDS | 45.0% |
| AACTCGTAACTGTGCAGATC+CGG | - | chr1_3:73563708-73563727 | Msa0139730:CDS | 45.0% | |
| TAACTGTGCAGATCCGGAAA+AGG | - | chr1_3:73563714-73563733 | Msa0139730:CDS | 45.0% | |
| ! | CTCTTCTTAGCAGCCTTTTC+CGG | + | chr1_3:73563730-73563749 | None:intergenic | 45.0% |
| GGAAAAGGCTGCTAAGAAGA+GGG | - | chr1_3:73563729-73563748 | Msa0139730:intron | 45.0% | |
| GAAGATAGAGACACCAAGAG+AGG | - | chr1_3:73563751-73563770 | Msa0139730:intron | 45.0% | |
| TTGTAGCTTCTCATCAGGTG+CGG | + | chr1_3:73563833-73563852 | None:intergenic | 45.0% | |
| CTTCAGGATGAGGAAATGCT+AGG | - | chr1_3:73563913-73563932 | Msa0139730:intron | 45.0% | |
| TGAAAGGGCAAAGAAGTTGG+AGG | - | chr1_3:73563969-73563988 | Msa0139730:intron | 45.0% | |
| GGGTGAAGCTATTGCTAAGA+AGG | - | chr1_3:73564017-73564036 | Msa0139730:intron | 45.0% | |
| GGACAGAGCTTCAGGAATTA+AGG | - | chr1_3:73564059-73564078 | Msa0139730:intron | 45.0% | |
| GGGAAGAGAGAGTTCAATCA+AGG | - | chr1_3:73564157-73564176 | Msa0139730:intron | 45.0% | |
| AGAGAAAAAGCTATTGCGGC+CGG | - | chr1_3:73564269-73564288 | Msa0139730:intron | 45.0% | |
| ! | ATACCTTTGGGAAGAAGCGG+TGG | + | chr1_3:73562471-73562490 | None:intergenic | 50.0% |
| ACCGCTTCTTCCCAAAGGTA+TGG | - | chr1_3:73562470-73562489 | Msa0139730:three_prime_UTR | 50.0% | |
| GTGTGGTTACAGGCTTCTCA+GGG | + | chr1_3:73563525-73563544 | None:intergenic | 50.0% | |
| AGTGTGGTTACAGGCTTCTC+AGG | + | chr1_3:73563526-73563545 | None:intergenic | 50.0% | |
| AGGTGAGGAAGAAGAGGATG+TGG | - | chr1_3:73563588-73563607 | Msa0139730:CDS | 50.0% | |
| CCATCCAGCTCAGACACAAA+AGG | + | chr1_3:73563619-73563638 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGTCTGAGCTGGA+TGG | - | chr1_3:73563616-73563635 | Msa0139730:CDS | 50.0% |
| CTGAGCTGGATGGAGATGAT+CGG | - | chr1_3:73563626-73563645 | Msa0139730:CDS | 50.0% | |
| CCTTTGGCGAAGCTCTTCAT+AGG | + | chr1_3:73563659-73563678 | None:intergenic | 50.0% | |
| CCTATGAAGAGCTTCGCCAA+AGG | - | chr1_3:73563656-73563675 | Msa0139730:CDS | 50.0% | |
| CAAGCTTGCGATGAAGCCTT+TGG | + | chr1_3:73563675-73563694 | None:intergenic | 50.0% | |
| AGGCTTCATCGCAAGCTTGA+AGG | - | chr1_3:73563676-73563695 | Msa0139730:CDS | 50.0% | |
| CGGAAAAGGCTGCTAAGAAG+AGG | - | chr1_3:73563728-73563747 | Msa0139730:intron | 50.0% | |
| AGGTGCGGGCTTACTTTCAT+TGG | + | chr1_3:73563818-73563837 | None:intergenic | 50.0% | |
| TGTAGCTTCTCATCAGGTGC+GGG | + | chr1_3:73563832-73563851 | None:intergenic | 50.0% | |
| GAAGGTGAAAAAGGATGCCG+CGG | - | chr1_3:73563855-73563874 | Msa0139730:intron | 50.0% | |
| ! | AAGCTCATTTGAAGCCTCCG+CGG | + | chr1_3:73563875-73563894 | None:intergenic | 50.0% |
| GCAATAGCTTCACCCTTCTC+AGG | + | chr1_3:73564012-73564031 | None:intergenic | 50.0% | |
| ! | GGAAGCATGGAAAGCAGCAA+TGG | - | chr1_3:73564038-73564057 | Msa0139730:intron | 50.0% |
| GAGAAAAAGCTATTGCGGCC+GGG | - | chr1_3:73564270-73564289 | Msa0139730:intron | 50.0% | |
| ! | ATACCTTTGGGAAGAAGCGG+TGG | + | chr1_3:73562471-73562490 | None:intergenic | 50.0% |
| ACCGCTTCTTCCCAAAGGTA+TGG | - | chr1_3:73562470-73562489 | Msa0139730:three_prime_UTR | 50.0% | |
| GTGTGGTTACAGGCTTCTCA+GGG | + | chr1_3:73563525-73563544 | None:intergenic | 50.0% | |
| AGTGTGGTTACAGGCTTCTC+AGG | + | chr1_3:73563526-73563545 | None:intergenic | 50.0% | |
| AGGTGAGGAAGAAGAGGATG+TGG | - | chr1_3:73563588-73563607 | Msa0139730:CDS | 50.0% | |
| CCATCCAGCTCAGACACAAA+AGG | + | chr1_3:73563619-73563638 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGTCTGAGCTGGA+TGG | - | chr1_3:73563616-73563635 | Msa0139730:CDS | 50.0% |
| CTGAGCTGGATGGAGATGAT+CGG | - | chr1_3:73563626-73563645 | Msa0139730:CDS | 50.0% | |
| CCTTTGGCGAAGCTCTTCAT+AGG | + | chr1_3:73563659-73563678 | None:intergenic | 50.0% | |
| CCTATGAAGAGCTTCGCCAA+AGG | - | chr1_3:73563656-73563675 | Msa0139730:CDS | 50.0% | |
| CAAGCTTGCGATGAAGCCTT+TGG | + | chr1_3:73563675-73563694 | None:intergenic | 50.0% | |
| AGGCTTCATCGCAAGCTTGA+AGG | - | chr1_3:73563676-73563695 | Msa0139730:CDS | 50.0% | |
| CGGAAAAGGCTGCTAAGAAG+AGG | - | chr1_3:73563728-73563747 | Msa0139730:intron | 50.0% | |
| AGGTGCGGGCTTACTTTCAT+TGG | + | chr1_3:73563818-73563837 | None:intergenic | 50.0% | |
| TGTAGCTTCTCATCAGGTGC+GGG | + | chr1_3:73563832-73563851 | None:intergenic | 50.0% | |
| GAAGGTGAAAAAGGATGCCG+CGG | - | chr1_3:73563855-73563874 | Msa0139730:intron | 50.0% | |
| ! | AAGCTCATTTGAAGCCTCCG+CGG | + | chr1_3:73563875-73563894 | None:intergenic | 50.0% |
| GCAATAGCTTCACCCTTCTC+AGG | + | chr1_3:73564012-73564031 | None:intergenic | 50.0% | |
| ! | GGAAGCATGGAAAGCAGCAA+TGG | - | chr1_3:73564038-73564057 | Msa0139730:intron | 50.0% |
| GAGAAAAAGCTATTGCGGCC+GGG | - | chr1_3:73564270-73564289 | Msa0139730:intron | 50.0% | |
| TGGGAAGAAGCGGTGGATGA+CGG | + | chr1_3:73562464-73562483 | None:intergenic | 55.0% | |
| CATCCACCGCTTCTTCCCAA+AGG | - | chr1_3:73562465-73562484 | Msa0139730:three_prime_UTR | 55.0% | |
| !! | TGCTGGTGTCGATGCTACAG+AGG | - | chr1_3:73563108-73563127 | Msa0139730:CDS | 55.0% |
| GCAGCAATGGACAGAGCTTC+AGG | - | chr1_3:73564051-73564070 | Msa0139730:intron | 55.0% | |
| TCCCTGTGACCTTCAAAGCC+CGG | + | chr1_3:73564291-73564310 | None:intergenic | 55.0% | |
| !! | GGCTTTGAAGGTCACAGGGA+AGG | - | chr1_3:73564291-73564310 | Msa0139730:intron | 55.0% |
| TGGGAAGAAGCGGTGGATGA+CGG | + | chr1_3:73562464-73562483 | None:intergenic | 55.0% | |
| CATCCACCGCTTCTTCCCAA+AGG | - | chr1_3:73562465-73562484 | Msa0139730:three_prime_UTR | 55.0% | |
| !! | TGCTGGTGTCGATGCTACAG+AGG | - | chr1_3:73563108-73563127 | Msa0139730:CDS | 55.0% |
| GCAGCAATGGACAGAGCTTC+AGG | - | chr1_3:73564051-73564070 | Msa0139730:intron | 55.0% | |
| TCCCTGTGACCTTCAAAGCC+CGG | + | chr1_3:73564291-73564310 | None:intergenic | 55.0% | |
| !! | GGCTTTGAAGGTCACAGGGA+AGG | - | chr1_3:73564291-73564310 | Msa0139730:intron | 55.0% |
| CGGCGAAAGGCGGAGTGATT+GGG | + | chr1_3:73562423-73562442 | None:intergenic | 60.0% | |
| ACGGCGAAAGGCGGAGTGAT+TGG | + | chr1_3:73562424-73562443 | None:intergenic | 60.0% | |
| ! | AAGAAGCGGTGGATGACGGC+GGG | + | chr1_3:73562460-73562479 | None:intergenic | 60.0% |
| ! | GAAGAAGCGGTGGATGACGG+CGG | + | chr1_3:73562461-73562480 | None:intergenic | 60.0% |
| GGTGAAAAAGGATGCCGCGG+AGG | - | chr1_3:73563858-73563877 | Msa0139730:intron | 60.0% | |
| ! | CTATTGCGGCCGGGCTTTGA+AGG | - | chr1_3:73564279-73564298 | Msa0139730:intron | 60.0% |
| !! | GCCGGGCTTTGAAGGTCACA+GGG | - | chr1_3:73564287-73564306 | Msa0139730:intron | 60.0% |
| CGGCGAAAGGCGGAGTGATT+GGG | + | chr1_3:73562423-73562442 | None:intergenic | 60.0% | |
| ACGGCGAAAGGCGGAGTGAT+TGG | + | chr1_3:73562424-73562443 | None:intergenic | 60.0% | |
| ! | AAGAAGCGGTGGATGACGGC+GGG | + | chr1_3:73562460-73562479 | None:intergenic | 60.0% |
| ! | GAAGAAGCGGTGGATGACGG+CGG | + | chr1_3:73562461-73562480 | None:intergenic | 60.0% |
| GGTGAAAAAGGATGCCGCGG+AGG | - | chr1_3:73563858-73563877 | Msa0139730:intron | 60.0% | |
| ! | CTATTGCGGCCGGGCTTTGA+AGG | - | chr1_3:73564279-73564298 | Msa0139730:intron | 60.0% |
| !! | GCCGGGCTTTGAAGGTCACA+GGG | - | chr1_3:73564287-73564306 | Msa0139730:intron | 60.0% |
| GGTCGACGTACGGCGAAAGG+CGG | + | chr1_3:73562433-73562452 | None:intergenic | 65.0% | |
| TCGGGTCGACGTACGGCGAA+AGG | + | chr1_3:73562436-73562455 | None:intergenic | 65.0% | |
| !! | GGCCGGGCTTTGAAGGTCAC+AGG | - | chr1_3:73564286-73564305 | Msa0139730:intron | 65.0% |
| GGTCGACGTACGGCGAAAGG+CGG | + | chr1_3:73562433-73562452 | None:intergenic | 65.0% | |
| TCGGGTCGACGTACGGCGAA+AGG | + | chr1_3:73562436-73562455 | None:intergenic | 65.0% | |
| !! | GGCCGGGCTTTGAAGGTCAC+AGG | - | chr1_3:73564286-73564305 | Msa0139730:intron | 65.0% |
| ! | GGCGGGTTCGGGTCGACGTA+CGG | + | chr1_3:73562443-73562462 | None:intergenic | 70.0% |
| ! | CGGTGGATGACGGCGGGTTC+GGG | + | chr1_3:73562454-73562473 | None:intergenic | 70.0% |
| ! | GCGGTGGATGACGGCGGGTT+CGG | + | chr1_3:73562455-73562474 | None:intergenic | 70.0% |
| ! | GGCGGGTTCGGGTCGACGTA+CGG | + | chr1_3:73562443-73562462 | None:intergenic | 70.0% |
| ! | CGGTGGATGACGGCGGGTTC+GGG | + | chr1_3:73562454-73562473 | None:intergenic | 70.0% |
| ! | GCGGTGGATGACGGCGGGTT+CGG | + | chr1_3:73562455-73562474 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 73562359 | 73564640 | 73562359 | ID=Msa0139730;Name=Msa0139730 |
| chr1_3 | mRNA | 73562359 | 73564640 | 73562359 | ID=Msa0139730-mRNA-1;Parent=Msa0139730;Name=Msa0139730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0.5|1|1|1|2|302|403 |
| chr1_3 | exon | 73562359 | 73563734 | 73562359 | ID=Msa0139730-mRNA-1:exon:25619;Parent=Msa0139730-mRNA-1 |
| chr1_3 | exon | 73564503 | 73564640 | 73564503 | ID=Msa0139730-mRNA-1:exon:25618;Parent=Msa0139730-mRNA-1 |
| chr1_3 | CDS | 73564503 | 73564640 | 73564503 | ID=Msa0139730-mRNA-1:cds;Parent=Msa0139730-mRNA-1 |
| chr1_3 | CDS | 73562661 | 73563734 | 73562661 | ID=Msa0139730-mRNA-1:cds;Parent=Msa0139730-mRNA-1 |
| chr1_3 | three_prime_UTR | 73562359 | 73562660 | 73562359 | ID=Msa0139730-mRNA-1:three_prime_utr;Parent=Msa0139730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
