Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132550 | AES94285.1 | 97.199 | 357 | 9 | 1 | 106 | 462 | 6 | 361 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132550 | G7JXC7 | 97.199 | 357 | 9 | 1 | 106 | 462 | 6 | 361 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038440 | Msa1132550 | 0.803652 | 3.147492e-49 | -8.615850e-47 |
| Msa0139730 | Msa1132550 | 0.891946 | 2.495149e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132550 | MtrunA17_Chr5g0399351 | 97.159 | 352 | 9 | 1 | 111 | 462 | 1 | 351 | 0.0 | 674 |
| Msa1132550 | MtrunA17_Chr2g0317181 | 85.227 | 88 | 13 | 0 | 331 | 418 | 4 | 91 | 3.87e-42 | 144 |
| Msa1132550 | MtrunA17_Chr2g0317191 | 63.636 | 99 | 34 | 2 | 114 | 210 | 5 | 103 | 1.68e-27 | 105 |
| Msa1132550 | MtrunA17_Chr3g0115291 | 87.500 | 64 | 5 | 2 | 1 | 61 | 15 | 78 | 2.18e-26 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1132550 | AT5G05210.2 | 49.189 | 370 | 133 | 8 | 133 | 458 | 16 | 374 | 1.44e-89 | 278 |
| Msa1132550 | AT5G05210.1 | 49.189 | 370 | 133 | 8 | 133 | 458 | 24 | 382 | 1.67e-89 | 278 |
| Msa1132550 | AT2G27750.1 | 52.778 | 180 | 64 | 5 | 274 | 449 | 19 | 181 | 8.80e-44 | 152 |
Find 118 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAACCCATGTTATATTT+TGG | 0.153792 | 7_3:+85425852 | Msa1132550:three_prime_UTR |
| GTGATTGGGATTTAGAAATT+AGG | 0.196108 | 7_3:-85423797 | None:intergenic |
| TCACTAGAATACAGGCATTT+TGG | 0.215580 | 7_3:+85425912 | Msa1132550:three_prime_UTR |
| GCGGTGGATGACGGCGGGTT+CGG | 0.215825 | 7_3:-85423843 | None:intergenic |
| TAACGAGAAACCGTGGTTTC+AGG | 0.232330 | 7_3:+85424811 | Msa1132550:CDS |
| GCCTGTATTCTAGTGATAAA+TGG | 0.241539 | 7_3:-85425905 | None:intergenic |
| TGAACTTCTCAAGAAGAGTT+TGG | 0.258601 | 7_3:+85424937 | Msa1132550:CDS |
| AGAAGTTCAAGTGTGGTTAC+AGG | 0.290349 | 7_3:-85424923 | None:intergenic |
| GCTACAAGAGAAGGTGAAAA+AGG | 0.303960 | 7_3:+85425237 | Msa1132550:CDS |
| CGGTGGATGACGGCGGGTTC+GGG | 0.307231 | 7_3:-85423842 | None:intergenic |
| TGATTGGGATTTAGAAATTA+GGG | 0.336302 | 7_3:-85423796 | None:intergenic |
| TATCATCATGGCAGATTTAC+CGG | 0.336518 | 7_3:+85425975 | Msa1132550:three_prime_UTR |
| GCAGCAATGGACAGAGCTTC+AGG | 0.337717 | 7_3:+85425442 | Msa1132550:CDS |
| AGTGTGGTTACAGGCTTCTC+AGG | 0.342543 | 7_3:-85424914 | None:intergenic |
| GTTTGGTCACGTTAAACTTC+AGG | 0.346929 | 7_3:+85425288 | Msa1132550:CDS |
| GAACTTCTCAAGAAGAGTTT+GGG | 0.346980 | 7_3:+85424938 | Msa1132550:CDS |
| AGGTGCGGGCTTACTTTCAT+TGG | 0.357636 | 7_3:-85425206 | None:intergenic |
| CAAGCTTGCGATGAAGCCTT+TGG | 0.361638 | 7_3:-85425063 | None:intergenic |
| TCCATTTATCACTAGAATAC+AGG | 0.366047 | 7_3:+85425904 | Msa1132550:three_prime_UTR |
| ACAGAATATCAAGAAGTCTA+AGG | 0.367209 | 7_3:+85424877 | Msa1132550:CDS |
| CTATTGCGGCCGGGCTTTGA+AGG | 0.371671 | 7_3:+85425670 | Msa1132550:CDS |
| TTCTCTTGTAGCTTCTCATC+AGG | 0.381853 | 7_3:-85425226 | None:intergenic |
| CAAGAGAGGATATCATTATC+AGG | 0.385515 | 7_3:+85425156 | Msa1132550:CDS |
| AGTTGTTAATTACATATTGT+TGG | 0.390747 | 7_3:+85425943 | Msa1132550:three_prime_UTR |
| GGACAGAGCTTCAGGAATTA+AGG | 0.391083 | 7_3:+85425450 | Msa1132550:CDS |
| TGTTGATGTTGGTCAAGATT+TGG | 0.391866 | 7_3:+85424706 | Msa1132550:CDS |
| TCTCCAACAAATTCATCAAA+TGG | 0.392870 | 7_3:+85423121 | Msa1132550:CDS |
| ACGGCGAAAGGCGGAGTGAT+TGG | 0.396018 | 7_3:-85423812 | None:intergenic |
| AAATAACGAGACCATACCTT+TGG | 0.402152 | 7_3:-85423872 | None:intergenic |
| GACCCATTTGATGAATTTGT+TGG | 0.403227 | 7_3:-85423124 | None:intergenic |
| AAGCCACAAGTTGAAATTGA+TGG | 0.403450 | 7_3:-85425791 | None:intergenic |
| GATAAAGAAAAGCATACATA+AGG | 0.405087 | 7_3:+85425492 | Msa1132550:CDS |
| CCTCCGATAACAATGCAAAA+AGG | 0.413586 | 7_3:-85425757 | None:intergenic |
| GCTTCAAATGAGCTTGTGTT+TGG | 0.418447 | 7_3:+85425271 | Msa1132550:CDS |
| TAATCTAATGGTTAATGAAC+CGG | 0.420372 | 7_3:-85425994 | None:intergenic |
| CGGCGAAAGGCGGAGTGATT+GGG | 0.426592 | 7_3:-85423811 | None:intergenic |
| GCAATAGCTTCACCCTTCTC+AGG | 0.428203 | 7_3:-85425400 | None:intergenic |
| AACTCGTAACTGTGCAGATC+CGG | 0.428390 | 7_3:+85425099 | Msa1132550:CDS |
| GGCCGGGCTTTGAAGGTCAC+AGG | 0.430067 | 7_3:+85425677 | Msa1132550:CDS |
| CCTTTGGCGAAGCTCTTCAT+AGG | 0.445722 | 7_3:-85425047 | None:intergenic |
| AACGAGAAACCGTGGTTTCA+GGG | 0.456991 | 7_3:+85424812 | Msa1132550:CDS |
| ATAAAGAAAAGCATACATAA+GGG | 0.460274 | 7_3:+85425493 | Msa1132550:CDS |
| GGGTGAAGCTATTGCTAAGA+AGG | 0.461254 | 7_3:+85425408 | Msa1132550:CDS |
| ATGCTGTTATAGGGAGACTT+TGG | 0.465023 | 7_3:+85424644 | Msa1132550:intron |
| CTCCAACAAATTCATCAAAT+GGG | 0.472113 | 7_3:+85423122 | Msa1132550:CDS |
| ATACAAATAACATAATCTAA+TGG | 0.473511 | 7_3:-85426006 | None:intergenic |
| GTTGGCAGATAAAACTTAGC+TGG | 0.478956 | 7_3:-85424782 | None:intergenic |
| AGGCTTCATCGCAAGCTTGA+AGG | 0.479052 | 7_3:+85425067 | Msa1132550:CDS |
| TCGGGTCGACGTACGGCGAA+AGG | 0.481534 | 7_3:-85423824 | None:intergenic |
| CATCCATCAATTTCAACTTG+TGG | 0.483348 | 7_3:+85425788 | Msa1132550:three_prime_UTR |
| TGTAGCTTCTCATCAGGTGC+GGG | 0.484265 | 7_3:-85425220 | None:intergenic |
| GTTGCAGAGGTTGTTGATGT+TGG | 0.484416 | 7_3:+85424695 | Msa1132550:CDS |
| CTGATAATGATATCCTCTCT+TGG | 0.486659 | 7_3:-85425155 | None:intergenic |
| TTTGATGAATTTGTTGGAGA+TGG | 0.492254 | 7_3:-85423118 | None:intergenic |
| GGGAAGAGAGAGTTCAATCA+AGG | 0.493714 | 7_3:+85425548 | Msa1132550:CDS |
| GAACAAGATGAAGTTGTTGA+TGG | 0.498321 | 7_3:+85423259 | Msa1132550:CDS |
| AGGTGAGGAAGAAGAGGATG+TGG | 0.498717 | 7_3:+85424979 | Msa1132550:CDS |
| ACTTGAAAGGGCAAAGAAGT+TGG | 0.502213 | 7_3:+85425357 | Msa1132550:CDS |
| TCATCAAATGGGTCACTCAC+TGG | 0.502272 | 7_3:+85423133 | Msa1132550:CDS |
| CGGAAAAGGCTGCTAAGAAG+AGG | 0.504510 | 7_3:+85425119 | Msa1132550:CDS |
| AAAGCACAAGGAACTTGAAA+GGG | 0.506359 | 7_3:+85425345 | Msa1132550:CDS |
| AATAACGAGACCATACCTTT+GGG | 0.506636 | 7_3:-85423871 | None:intergenic |
| GGCGGGTTCGGGTCGACGTA+CGG | 0.506837 | 7_3:-85423831 | None:intergenic |
| CCATCCAGCTCAGACACAAA+AGG | 0.508756 | 7_3:-85425007 | None:intergenic |
| GATGAAGATGAGGAAGCAAA+AGG | 0.510760 | 7_3:+85424670 | Msa1132550:CDS |
| TAACTGTGCAGATCCGGAAA+AGG | 0.514146 | 7_3:+85425105 | Msa1132550:CDS |
| TCAATCAAGGGATCAGTTGA+AGG | 0.518168 | 7_3:+85425561 | Msa1132550:CDS |
| AAGAAGCGGTGGATGACGGC+GGG | 0.518852 | 7_3:-85423848 | None:intergenic |
| GGCTTTGAAGGTCACAGGGA+AGG | 0.530107 | 7_3:+85425682 | Msa1132550:CDS |
| AGGCAGAGAAGCAAAAGAAA+AGG | 0.532776 | 7_3:+85425581 | Msa1132550:CDS |
| ACTTTGGAGTGATGAAGATG+AGG | 0.541362 | 7_3:+85424660 | Msa1132550:CDS |
| ACCGCTTCTTCCCAAAGGTA+TGG | 0.542345 | 7_3:+85423861 | Msa1132550:CDS |
| TCACGTTAAACTTCAGGATG+AGG | 0.542978 | 7_3:+85425294 | Msa1132550:CDS |
| GAATGAAGGTGAGGAAGAAG+AGG | 0.544065 | 7_3:+85424973 | Msa1132550:CDS |
| CAAAGCACAAGGAACTTGAA+AGG | 0.545046 | 7_3:+85425344 | Msa1132550:CDS |
| TGGGAAGAAGCGGTGGATGA+CGG | 0.547206 | 7_3:-85423852 | None:intergenic |
| GGAAGCATGGAAAGCAGCAA+TGG | 0.549880 | 7_3:+85425429 | Msa1132550:CDS |
| TTATCAATTTGGGATCGTCA+TGG | 0.557381 | 7_3:-85425474 | None:intergenic |
| GGATTAATGATAAGAAAATG+AGG | 0.557444 | 7_3:+85425623 | Msa1132550:CDS |
| GGTTTCTCGTTATCATCAGT+TGG | 0.560730 | 7_3:-85424800 | None:intergenic |
| TGGTTTGCATCATATCATCA+TGG | 0.561936 | 7_3:+85425963 | Msa1132550:three_prime_UTR |
| GAAGAAGAATGATCCTGAGA+AGG | 0.567162 | 7_3:+85425387 | Msa1132550:CDS |
| CTTCAGGATGAGGAAATGCT+AGG | 0.569079 | 7_3:+85425304 | Msa1132550:CDS |
| TCCCTGTGACCTTCAAAGCC+CGG | 0.571851 | 7_3:-85425679 | None:intergenic |
| GATGGTGATGGTGAAGAAGA+AGG | 0.573656 | 7_3:+85423277 | Msa1132550:CDS |
| TTGTAGCTTCTCATCAGGTG+CGG | 0.577217 | 7_3:-85425221 | None:intergenic |
| AGTAAATGCCATGAAAGAGA+AGG | 0.579977 | 7_3:-85423190 | None:intergenic |
| TTGTTGAGACCCTGAAACCA+CGG | 0.583522 | 7_3:-85424821 | None:intergenic |
| TGATGAGAAGCTACAAGAGA+AGG | 0.587083 | 7_3:+85425228 | Msa1132550:CDS |
| GTGTGGTTACAGGCTTCTCA+GGG | 0.588570 | 7_3:-85424913 | None:intergenic |
| ACCATACCTTTGGGAAGAAG+CGG | 0.591973 | 7_3:-85423862 | None:intergenic |
| GAAGCAAAAGGTTGTTGCAG+AGG | 0.592741 | 7_3:+85424682 | Msa1132550:CDS |
| GATGAAGTTGTTGATGGTGA+TGG | 0.596078 | 7_3:+85423265 | Msa1132550:CDS |
| GTAAATGCCATGAAAGAGAA+GGG | 0.597759 | 7_3:-85423189 | None:intergenic |
| TGAAAGGGCAAAGAAGTTGG+AGG | 0.598047 | 7_3:+85425360 | Msa1132550:CDS |
| ATCAGGATAATAAACGCAAG+AGG | 0.601271 | 7_3:+85425173 | Msa1132550:CDS |
| CTGAGCTGGATGGAGATGAT+CGG | 0.601585 | 7_3:+85425017 | Msa1132550:CDS |
| AAGAAGAATGATCCTGAGAA+GGG | 0.603235 | 7_3:+85425388 | Msa1132550:CDS |
| CATCCACCGCTTCTTCCCAA+AGG | 0.604710 | 7_3:+85423856 | Msa1132550:CDS |
| CTATTGCTAAGAAGGAAGCA+TGG | 0.605991 | 7_3:+85425416 | Msa1132550:CDS |
| GTAATTGCCAAAATATAACA+TGG | 0.609450 | 7_3:-85425859 | None:intergenic |
| GAAGAAGCGGTGGATGACGG+CGG | 0.614612 | 7_3:-85423849 | None:intergenic |
| CTTCTTGAGAAGTTCAAGTG+TGG | 0.616015 | 7_3:-85424930 | None:intergenic |
| TCTGCGAGACACAGATAATG+AGG | 0.617650 | 7_3:-85423766 | None:intergenic |
| ATACCTTTGGGAAGAAGCGG+TGG | 0.624169 | 7_3:-85423859 | None:intergenic |
| TAAAGAAAAGCATACATAAG+GGG | 0.624269 | 7_3:+85425494 | Msa1132550:CDS |
| TCAGGATAATAAACGCAAGA+GGG | 0.627512 | 7_3:+85425174 | Msa1132550:CDS |
| GGTCGACGTACGGCGAAAGG+CGG | 0.628320 | 7_3:-85423821 | None:intergenic |
| GGAAGAGAGAGTTCAATCAA+GGG | 0.629511 | 7_3:+85425549 | Msa1132550:CDS |
| CAACAAGAAACAGAAAGCAA+AGG | 0.638546 | 7_3:+85424838 | Msa1132550:CDS |
| GGAAAAGGCTGCTAAGAAGA+GGG | 0.647760 | 7_3:+85425120 | Msa1132550:CDS |
| GCCGGGCTTTGAAGGTCACA+GGG | 0.648501 | 7_3:+85425678 | Msa1132550:CDS |
| CCTATGAAGAGCTTCGCCAA+AGG | 0.661576 | 7_3:+85425047 | Msa1132550:CDS |
| AAGCTCATTTGAAGCCTCCG+CGG | 0.683230 | 7_3:-85425263 | None:intergenic |
| TAATTGCCAAAATATAACAT+GGG | 0.683860 | 7_3:-85425858 | None:intergenic |
| GAAGATAGAGACACCAAGAG+AGG | 0.685788 | 7_3:+85425142 | Msa1132550:CDS |
| GGTCAGATAATATAGCTGAG+AGG | 0.714827 | 7_3:+85425602 | Msa1132550:CDS |
| CTGATGATAACGAGAAACCG+TGG | 0.715203 | 7_3:+85424804 | Msa1132550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTTTAAAAAAATAAAC+CGG | + | chr7_3:85423703-85423722 | Msa1132550:intron | 10.0% |
| !!! | TTTCTCTAAAAAAATTTGAT+CGG | - | chr7_3:85423608-85423627 | None:intergenic | 15.0% |
| !! | AGAGAAAAAAAATACTAAAT+TGG | + | chr7_3:85423621-85423640 | Msa1132550:intron | 15.0% |
| !!! | TTTCTTTTTTAATTGGTTTT+AGG | + | chr7_3:85424046-85424065 | Msa1132550:intron | 15.0% |
| !!! | TTCTTTTTTAATTGGTTTTA+GGG | + | chr7_3:85424047-85424066 | Msa1132550:intron | 15.0% |
| !!! | ATTTATTTTTTTCTTCAGTA+TGG | - | chr7_3:85424459-85424478 | None:intergenic | 15.0% |
| !! | ATACAAATAACATAATCTAA+TGG | - | chr7_3:85426009-85426028 | None:intergenic | 15.0% |
| !!! | TTAACATGAACATTTTTATC+TGG | - | chr7_3:85423226-85423245 | None:intergenic | 20.0% |
| !! | TAAAATATGTAAATGTCCAA+CGG | - | chr7_3:85423483-85423502 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTTTTTGAGCAA+CGG | - | chr7_3:85423579-85423598 | None:intergenic | 20.0% |
| !!! | GCAAATGTTTCTTTTTTAAT+TGG | + | chr7_3:85424039-85424058 | Msa1132550:intron | 20.0% |
| !! | TAATACTAGTTATAGAGTTA+GGG | - | chr7_3:85424333-85424352 | None:intergenic | 20.0% |
| !!! | ATGCTTTTCTTTATCAATTT+GGG | - | chr7_3:85425487-85425506 | None:intergenic | 20.0% |
| !!! | TATGCTTTTCTTTATCAATT+TGG | - | chr7_3:85425488-85425507 | None:intergenic | 20.0% |
| !!! | ATAAAGAAAAGCATACATAA+GGG | + | chr7_3:85425493-85425512 | Msa1132550:CDS | 20.0% |
| !!! | TATTAACCCATGTTATATTT+TGG | + | chr7_3:85425852-85425871 | Msa1132550:three_prime_UTR | 20.0% |
| !! | TAATTGCCAAAATATAACAT+GGG | - | chr7_3:85425861-85425880 | None:intergenic | 20.0% |
| !! | ATGGAAATAGTCAAAAAAAA+AGG | - | chr7_3:85425889-85425908 | None:intergenic | 20.0% |
| !! | AGTTGTTAATTACATATTGT+TGG | + | chr7_3:85425943-85425962 | Msa1132550:three_prime_UTR | 20.0% |
| !!! | AAGGGTTTTTTGAATTCAAA+TGG | - | chr7_3:85423174-85423193 | None:intergenic | 25.0% |
| !! | AGGTTAAACAATTGATTTCA+TGG | + | chr7_3:85423297-85423316 | Msa1132550:intron | 25.0% |
| !! | GGTTAAACAATTGATTTCAT+GGG | + | chr7_3:85423298-85423317 | Msa1132550:intron | 25.0% |
| !! | CATATTTTACTTGTGTCAAT+AGG | + | chr7_3:85423494-85423513 | Msa1132550:intron | 25.0% |
| ! | TGATTGGGATTTAGAAATTA+GGG | - | chr7_3:85423799-85423818 | None:intergenic | 25.0% |
| ! | AACCTTATACATAACATAAG+CGG | - | chr7_3:85424111-85424130 | None:intergenic | 25.0% |
| ! | GTAATACTAGTTATAGAGTT+AGG | - | chr7_3:85424334-85424353 | None:intergenic | 25.0% |
| ! | AGTATTACTATACATATTGC+TGG | + | chr7_3:85424346-85424365 | Msa1132550:intron | 25.0% |
| !! | TCTGTGTAATTTTCAAATTC+TGG | + | chr7_3:85424529-85424548 | Msa1132550:intron | 25.0% |
| !! | GATAAAGAAAAGCATACATA+AGG | + | chr7_3:85425492-85425511 | Msa1132550:CDS | 25.0% |
| !! | TAAAGAAAAGCATACATAAG+GGG | + | chr7_3:85425494-85425513 | Msa1132550:CDS | 25.0% |
| ! | AAGAAAAAAATGCAGAGAAA+TGG | + | chr7_3:85425527-85425546 | Msa1132550:CDS | 25.0% |
| ! | AGAAAAAAATGCAGAGAAAT+GGG | + | chr7_3:85425528-85425547 | Msa1132550:CDS | 25.0% |
| ! | GGATTAATGATAAGAAAATG+AGG | + | chr7_3:85425623-85425642 | Msa1132550:CDS | 25.0% |
| ! | GTAATTGCCAAAATATAACA+TGG | - | chr7_3:85425862-85425881 | None:intergenic | 25.0% |
| ! | TAATCTAATGGTTAATGAAC+CGG | - | chr7_3:85425997-85426016 | None:intergenic | 25.0% |
| !! | TTTGATGAATTTGTTGGAGA+TGG | - | chr7_3:85423121-85423140 | None:intergenic | 30.0% |
| TCTCCAACAAATTCATCAAA+TGG | + | chr7_3:85423121-85423140 | Msa1132550:CDS | 30.0% | |
| CTCCAACAAATTCATCAAAT+GGG | + | chr7_3:85423122-85423141 | Msa1132550:CDS | 30.0% | |
| ! | AAACAATTGATTTCATGGGT+AGG | + | chr7_3:85423302-85423321 | Msa1132550:intron | 30.0% |
| AATCTCCTCTTGAAACAAAT+AGG | - | chr7_3:85423328-85423347 | None:intergenic | 30.0% | |
| ATAGTGTGAGAGACAATAAT+AGG | - | chr7_3:85423730-85423749 | None:intergenic | 30.0% | |
| GTGATTGGGATTTAGAAATT+AGG | - | chr7_3:85423800-85423819 | None:intergenic | 30.0% | |
| GAAGAAAATAAAGAACGAAG+TGG | - | chr7_3:85423960-85423979 | None:intergenic | 30.0% | |
| AACCGCTTATGTTATGTATA+AGG | + | chr7_3:85424106-85424125 | Msa1132550:intron | 30.0% | |
| ATGTATGCTATAAGCTAGAT+TGG | + | chr7_3:85424181-85424200 | Msa1132550:intron | 30.0% | |
| TTAAATGTAATCACATGTGC+TGG | + | chr7_3:85424482-85424501 | Msa1132550:intron | 30.0% | |
| TTATTCTCTCATGCTGTTAT+AGG | + | chr7_3:85424634-85424653 | Msa1132550:intron | 30.0% | |
| TATTCTCTCATGCTGTTATA+GGG | + | chr7_3:85424635-85424654 | Msa1132550:intron | 30.0% | |
| AACCAATTTGTCGAAAAAAC+TGG | - | chr7_3:85424753-85424772 | None:intergenic | 30.0% | |
| ACAGAATATCAAGAAGTCTA+AGG | + | chr7_3:85424877-85424896 | Msa1132550:CDS | 30.0% | |
| GAGAAAAATTTCAAAGCACA+AGG | + | chr7_3:85425333-85425352 | Msa1132550:CDS | 30.0% | |
| !!! | GGTTTTATTAATAGCAGTTC+TGG | + | chr7_3:85425703-85425722 | Msa1132550:CDS | 30.0% |
| ! | GTACCTTTTTGCATTGTTAT+CGG | + | chr7_3:85425754-85425773 | Msa1132550:three_prime_UTR | 30.0% |
| TCCATTTATCACTAGAATAC+AGG | + | chr7_3:85425904-85425923 | Msa1132550:three_prime_UTR | 30.0% | |
| GACCCATTTGATGAATTTGT+TGG | - | chr7_3:85423127-85423146 | None:intergenic | 35.0% | |
| CAAAAAACCCTTCTCTTTCA+TGG | + | chr7_3:85423182-85423201 | Msa1132550:CDS | 35.0% | |
| GTAAATGCCATGAAAGAGAA+GGG | - | chr7_3:85423192-85423211 | None:intergenic | 35.0% | |
| AGTAAATGCCATGAAAGAGA+AGG | - | chr7_3:85423193-85423212 | None:intergenic | 35.0% | |
| GAACAAGATGAAGTTGTTGA+TGG | + | chr7_3:85423259-85423278 | Msa1132550:CDS | 35.0% | |
| TTGTTTCAAGAGGAGATTAG+AGG | + | chr7_3:85423330-85423349 | Msa1132550:intron | 35.0% | |
| TGTATTGTTGTGACCTTTGA+TGG | + | chr7_3:85423409-85423428 | Msa1132550:intron | 35.0% | |
| AATAACGAGACCATACCTTT+GGG | - | chr7_3:85423874-85423893 | None:intergenic | 35.0% | |
| AAATAACGAGACCATACCTT+TGG | - | chr7_3:85423875-85423894 | None:intergenic | 35.0% | |
| !!! | AATTGGTTTTAGGGTCTGTT+TGG | + | chr7_3:85424056-85424075 | Msa1132550:intron | 35.0% |
| ! | TAAGCTTTGTGAGACTGTTT+GGG | - | chr7_3:85424272-85424291 | None:intergenic | 35.0% |
| ! | ATAAGCTTTGTGAGACTGTT+TGG | - | chr7_3:85424273-85424292 | None:intergenic | 35.0% |
| TTATAGAGTTAGGGACTGTT+TGG | - | chr7_3:85424324-85424343 | None:intergenic | 35.0% | |
| ACTATACATATTGCTGGCAA+AGG | + | chr7_3:85424352-85424371 | Msa1132550:intron | 35.0% | |
| TGTTGATGTTGGTCAAGATT+TGG | + | chr7_3:85424706-85424725 | Msa1132550:CDS | 35.0% | |
| !!! | TGCCAGTTTTTTCGACAAAT+TGG | + | chr7_3:85424748-85424767 | Msa1132550:CDS | 35.0% |
| CAACAAGAAACAGAAAGCAA+AGG | + | chr7_3:85424838-85424857 | Msa1132550:CDS | 35.0% | |
| TGAACTTCTCAAGAAGAGTT+TGG | + | chr7_3:85424937-85424956 | Msa1132550:CDS | 35.0% | |
| GAACTTCTCAAGAAGAGTTT+GGG | + | chr7_3:85424938-85424957 | Msa1132550:CDS | 35.0% | |
| GGAAAAGAAAAAGCGAATGA+AGG | + | chr7_3:85424959-85424978 | Msa1132550:CDS | 35.0% | |
| ! | CTGATAATGATATCCTCTCT+TGG | - | chr7_3:85425158-85425177 | None:intergenic | 35.0% |
| CAAGAGAGGATATCATTATC+AGG | + | chr7_3:85425156-85425175 | Msa1132550:CDS | 35.0% | |
| ATCAGGATAATAAACGCAAG+AGG | + | chr7_3:85425173-85425192 | Msa1132550:CDS | 35.0% | |
| TCAGGATAATAAACGCAAGA+GGG | + | chr7_3:85425174-85425193 | Msa1132550:CDS | 35.0% | |
| AAAGCACAAGGAACTTGAAA+GGG | + | chr7_3:85425345-85425364 | Msa1132550:CDS | 35.0% | |
| AAGAAGAATGATCCTGAGAA+GGG | + | chr7_3:85425388-85425407 | Msa1132550:CDS | 35.0% | |
| ! | TTATCAATTTGGGATCGTCA+TGG | - | chr7_3:85425477-85425496 | None:intergenic | 35.0% |
| AGAGAGAGAAAAAGCTATTG+CGG | + | chr7_3:85425656-85425675 | Msa1132550:CDS | 35.0% | |
| CATCCATCAATTTCAACTTG+TGG | + | chr7_3:85425788-85425807 | Msa1132550:three_prime_UTR | 35.0% | |
| ! | AAGCCACAAGTTGAAATTGA+TGG | - | chr7_3:85425794-85425813 | None:intergenic | 35.0% |
| GCCTGTATTCTAGTGATAAA+TGG | - | chr7_3:85425908-85425927 | None:intergenic | 35.0% | |
| ! | TCACTAGAATACAGGCATTT+TGG | + | chr7_3:85425912-85425931 | Msa1132550:three_prime_UTR | 35.0% |
| ! | TGGTTTGCATCATATCATCA+TGG | + | chr7_3:85425963-85425982 | Msa1132550:three_prime_UTR | 35.0% |
| TATCATCATGGCAGATTTAC+CGG | + | chr7_3:85425975-85425994 | Msa1132550:three_prime_UTR | 35.0% | |
| !! | GATGAAGTTGTTGATGGTGA+TGG | + | chr7_3:85423265-85423284 | Msa1132550:CDS | 40.0% |
| GTAGGCCTATTTGTTTCAAG+AGG | + | chr7_3:85423320-85423339 | Msa1132550:intron | 40.0% | |
| GATTAGAGGAAGAGACACAA+AGG | + | chr7_3:85423344-85423363 | Msa1132550:intron | 40.0% | |
| GAGACACAAAGGAATTGAGA+AGG | + | chr7_3:85423355-85423374 | Msa1132550:intron | 40.0% | |
| ACTACAAGTGCTTCCATCAA+AGG | - | chr7_3:85423425-85423444 | None:intergenic | 40.0% | |
| GTGAGAGACAATAATAGGTC+CGG | - | chr7_3:85423725-85423744 | None:intergenic | 40.0% | |
| AGTGCTTTGTAGGAATTCAG+AGG | - | chr7_3:85424400-85424419 | None:intergenic | 40.0% | |
| ! | TGTCTGTGATAGTGCTTTGT+AGG | - | chr7_3:85424410-85424429 | None:intergenic | 40.0% |
| ATGCTGTTATAGGGAGACTT+TGG | + | chr7_3:85424644-85424663 | Msa1132550:intron | 40.0% | |
| !! | ACTTTGGAGTGATGAAGATG+AGG | + | chr7_3:85424660-85424679 | Msa1132550:CDS | 40.0% |
| GATGAAGATGAGGAAGCAAA+AGG | + | chr7_3:85424670-85424689 | Msa1132550:CDS | 40.0% | |
| GTTGGCAGATAAAACTTAGC+TGG | - | chr7_3:85424785-85424804 | None:intergenic | 40.0% | |
| GGTTTCTCGTTATCATCAGT+TGG | - | chr7_3:85424803-85424822 | None:intergenic | 40.0% | |
| AGAAGTTCAAGTGTGGTTAC+AGG | - | chr7_3:85424926-85424945 | None:intergenic | 40.0% | |
| CTTCTTGAGAAGTTCAAGTG+TGG | - | chr7_3:85424933-85424952 | None:intergenic | 40.0% | |
| AGAAAAAGCGAATGAAGGTG+AGG | + | chr7_3:85424964-85424983 | Msa1132550:CDS | 40.0% | |
| ! | ATCGCAAGCTTGAAGGTTTT+CGG | + | chr7_3:85425074-85425093 | Msa1132550:CDS | 40.0% |
| TTCTCTTGTAGCTTCTCATC+AGG | - | chr7_3:85425229-85425248 | None:intergenic | 40.0% | |
| TGATGAGAAGCTACAAGAGA+AGG | + | chr7_3:85425228-85425247 | Msa1132550:CDS | 40.0% | |
| GCTACAAGAGAAGGTGAAAA+AGG | + | chr7_3:85425237-85425256 | Msa1132550:CDS | 40.0% | |
| GCTTCAAATGAGCTTGTGTT+TGG | + | chr7_3:85425271-85425290 | Msa1132550:CDS | 40.0% | |
| GTTTGGTCACGTTAAACTTC+AGG | + | chr7_3:85425288-85425307 | Msa1132550:CDS | 40.0% | |
| TCACGTTAAACTTCAGGATG+AGG | + | chr7_3:85425294-85425313 | Msa1132550:CDS | 40.0% | |
| CAAAGCACAAGGAACTTGAA+AGG | + | chr7_3:85425344-85425363 | Msa1132550:CDS | 40.0% | |
| ACTTGAAAGGGCAAAGAAGT+TGG | + | chr7_3:85425357-85425376 | Msa1132550:CDS | 40.0% | |
| GAAGAAGAATGATCCTGAGA+AGG | + | chr7_3:85425387-85425406 | Msa1132550:CDS | 40.0% | |
| CTATTGCTAAGAAGGAAGCA+TGG | + | chr7_3:85425416-85425435 | Msa1132550:CDS | 40.0% | |
| GGAAGAGAGAGTTCAATCAA+GGG | + | chr7_3:85425549-85425568 | Msa1132550:CDS | 40.0% | |
| TCAATCAAGGGATCAGTTGA+AGG | + | chr7_3:85425561-85425580 | Msa1132550:CDS | 40.0% | |
| AGGCAGAGAAGCAAAAGAAA+AGG | + | chr7_3:85425581-85425600 | Msa1132550:CDS | 40.0% | |
| GGTCAGATAATATAGCTGAG+AGG | + | chr7_3:85425602-85425621 | Msa1132550:CDS | 40.0% | |
| CCTCCGATAACAATGCAAAA+AGG | - | chr7_3:85425760-85425779 | None:intergenic | 40.0% | |
| ! | CCTTTTTGCATTGTTATCGG+AGG | + | chr7_3:85425757-85425776 | Msa1132550:three_prime_UTR | 40.0% |
| TCATCAAATGGGTCACTCAC+TGG | + | chr7_3:85423133-85423152 | Msa1132550:CDS | 45.0% | |
| !! | GATGGTGATGGTGAAGAAGA+AGG | + | chr7_3:85423277-85423296 | Msa1132550:CDS | 45.0% |
| CAGCTGTAGTTAACTACCGT+TGG | + | chr7_3:85423464-85423483 | Msa1132550:intron | 45.0% | |
| TCTGCGAGACACAGATAATG+AGG | - | chr7_3:85423769-85423788 | None:intergenic | 45.0% | |
| ! | ACCATACCTTTGGGAAGAAG+CGG | - | chr7_3:85423865-85423884 | None:intergenic | 45.0% |
| GAAGCAAAAGGTTGTTGCAG+AGG | + | chr7_3:85424682-85424701 | Msa1132550:CDS | 45.0% | |
| GTTGCAGAGGTTGTTGATGT+TGG | + | chr7_3:85424695-85424714 | Msa1132550:CDS | 45.0% | |
| ! | CTGATGATAACGAGAAACCG+TGG | + | chr7_3:85424804-85424823 | Msa1132550:CDS | 45.0% |
| TAACGAGAAACCGTGGTTTC+AGG | + | chr7_3:85424811-85424830 | Msa1132550:CDS | 45.0% | |
| AACGAGAAACCGTGGTTTCA+GGG | + | chr7_3:85424812-85424831 | Msa1132550:CDS | 45.0% | |
| TTGTTGAGACCCTGAAACCA+CGG | - | chr7_3:85424824-85424843 | None:intergenic | 45.0% | |
| GAATGAAGGTGAGGAAGAAG+AGG | + | chr7_3:85424973-85424992 | Msa1132550:CDS | 45.0% | |
| ! | TAAGCCTTTTGTGTCTGAGC+TGG | + | chr7_3:85425003-85425022 | Msa1132550:CDS | 45.0% |
| AACTCGTAACTGTGCAGATC+CGG | + | chr7_3:85425099-85425118 | Msa1132550:CDS | 45.0% | |
| TAACTGTGCAGATCCGGAAA+AGG | + | chr7_3:85425105-85425124 | Msa1132550:CDS | 45.0% | |
| ! | CTCTTCTTAGCAGCCTTTTC+CGG | - | chr7_3:85425121-85425140 | None:intergenic | 45.0% |
| GGAAAAGGCTGCTAAGAAGA+GGG | + | chr7_3:85425120-85425139 | Msa1132550:CDS | 45.0% | |
| GAAGATAGAGACACCAAGAG+AGG | + | chr7_3:85425142-85425161 | Msa1132550:CDS | 45.0% | |
| TTGTAGCTTCTCATCAGGTG+CGG | - | chr7_3:85425224-85425243 | None:intergenic | 45.0% | |
| CTTCAGGATGAGGAAATGCT+AGG | + | chr7_3:85425304-85425323 | Msa1132550:CDS | 45.0% | |
| TGAAAGGGCAAAGAAGTTGG+AGG | + | chr7_3:85425360-85425379 | Msa1132550:CDS | 45.0% | |
| GGGTGAAGCTATTGCTAAGA+AGG | + | chr7_3:85425408-85425427 | Msa1132550:CDS | 45.0% | |
| GGACAGAGCTTCAGGAATTA+AGG | + | chr7_3:85425450-85425469 | Msa1132550:CDS | 45.0% | |
| GGGAAGAGAGAGTTCAATCA+AGG | + | chr7_3:85425548-85425567 | Msa1132550:CDS | 45.0% | |
| AGAGAAAAAGCTATTGCGGC+CGG | + | chr7_3:85425660-85425679 | Msa1132550:CDS | 45.0% | |
| ! | ATACCTTTGGGAAGAAGCGG+TGG | - | chr7_3:85423862-85423881 | None:intergenic | 50.0% |
| ACCGCTTCTTCCCAAAGGTA+TGG | + | chr7_3:85423861-85423880 | Msa1132550:CDS | 50.0% | |
| GTGTGGTTACAGGCTTCTCA+GGG | - | chr7_3:85424916-85424935 | None:intergenic | 50.0% | |
| AGTGTGGTTACAGGCTTCTC+AGG | - | chr7_3:85424917-85424936 | None:intergenic | 50.0% | |
| AGGTGAGGAAGAAGAGGATG+TGG | + | chr7_3:85424979-85424998 | Msa1132550:CDS | 50.0% | |
| CCATCCAGCTCAGACACAAA+AGG | - | chr7_3:85425010-85425029 | None:intergenic | 50.0% | |
| ! | CCTTTTGTGTCTGAGCTGGA+TGG | + | chr7_3:85425007-85425026 | Msa1132550:CDS | 50.0% |
| CTGAGCTGGATGGAGATGAT+CGG | + | chr7_3:85425017-85425036 | Msa1132550:CDS | 50.0% | |
| CCTTTGGCGAAGCTCTTCAT+AGG | - | chr7_3:85425050-85425069 | None:intergenic | 50.0% | |
| CCTATGAAGAGCTTCGCCAA+AGG | + | chr7_3:85425047-85425066 | Msa1132550:CDS | 50.0% | |
| CAAGCTTGCGATGAAGCCTT+TGG | - | chr7_3:85425066-85425085 | None:intergenic | 50.0% | |
| AGGCTTCATCGCAAGCTTGA+AGG | + | chr7_3:85425067-85425086 | Msa1132550:CDS | 50.0% | |
| CGGAAAAGGCTGCTAAGAAG+AGG | + | chr7_3:85425119-85425138 | Msa1132550:CDS | 50.0% | |
| AGGTGCGGGCTTACTTTCAT+TGG | - | chr7_3:85425209-85425228 | None:intergenic | 50.0% | |
| TGTAGCTTCTCATCAGGTGC+GGG | - | chr7_3:85425223-85425242 | None:intergenic | 50.0% | |
| GAAGGTGAAAAAGGATGCCG+CGG | + | chr7_3:85425246-85425265 | Msa1132550:CDS | 50.0% | |
| ! | AAGCTCATTTGAAGCCTCCG+CGG | - | chr7_3:85425266-85425285 | None:intergenic | 50.0% |
| GCAATAGCTTCACCCTTCTC+AGG | - | chr7_3:85425403-85425422 | None:intergenic | 50.0% | |
| ! | GGAAGCATGGAAAGCAGCAA+TGG | + | chr7_3:85425429-85425448 | Msa1132550:CDS | 50.0% |
| GAGAAAAAGCTATTGCGGCC+GGG | + | chr7_3:85425661-85425680 | Msa1132550:CDS | 50.0% | |
| TGGGAAGAAGCGGTGGATGA+CGG | - | chr7_3:85423855-85423874 | None:intergenic | 55.0% | |
| CATCCACCGCTTCTTCCCAA+AGG | + | chr7_3:85423856-85423875 | Msa1132550:CDS | 55.0% | |
| !! | TGCTGGTGTCGATGCTACAG+AGG | + | chr7_3:85424499-85424518 | Msa1132550:intron | 55.0% |
| GCAGCAATGGACAGAGCTTC+AGG | + | chr7_3:85425442-85425461 | Msa1132550:CDS | 55.0% | |
| TCCCTGTGACCTTCAAAGCC+CGG | - | chr7_3:85425682-85425701 | None:intergenic | 55.0% | |
| !! | GGCTTTGAAGGTCACAGGGA+AGG | + | chr7_3:85425682-85425701 | Msa1132550:CDS | 55.0% |
| CGGCGAAAGGCGGAGTGATT+GGG | - | chr7_3:85423814-85423833 | None:intergenic | 60.0% | |
| ACGGCGAAAGGCGGAGTGAT+TGG | - | chr7_3:85423815-85423834 | None:intergenic | 60.0% | |
| ! | AAGAAGCGGTGGATGACGGC+GGG | - | chr7_3:85423851-85423870 | None:intergenic | 60.0% |
| ! | GAAGAAGCGGTGGATGACGG+CGG | - | chr7_3:85423852-85423871 | None:intergenic | 60.0% |
| GGTGAAAAAGGATGCCGCGG+AGG | + | chr7_3:85425249-85425268 | Msa1132550:CDS | 60.0% | |
| ! | CTATTGCGGCCGGGCTTTGA+AGG | + | chr7_3:85425670-85425689 | Msa1132550:CDS | 60.0% |
| !! | GCCGGGCTTTGAAGGTCACA+GGG | + | chr7_3:85425678-85425697 | Msa1132550:CDS | 60.0% |
| GGTCGACGTACGGCGAAAGG+CGG | - | chr7_3:85423824-85423843 | None:intergenic | 65.0% | |
| TCGGGTCGACGTACGGCGAA+AGG | - | chr7_3:85423827-85423846 | None:intergenic | 65.0% | |
| !! | GGCCGGGCTTTGAAGGTCAC+AGG | + | chr7_3:85425677-85425696 | Msa1132550:CDS | 65.0% |
| ! | GGCGGGTTCGGGTCGACGTA+CGG | - | chr7_3:85423834-85423853 | None:intergenic | 70.0% |
| ! | CGGTGGATGACGGCGGGTTC+GGG | - | chr7_3:85423845-85423864 | None:intergenic | 70.0% |
| ! | GCGGTGGATGACGGCGGGTT+CGG | - | chr7_3:85423846-85423865 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 85423115 | 85426031 | 85423115 | ID=Msa1132550;Name=Msa1132550 |
| chr7_3 | mRNA | 85423115 | 85426031 | 85423115 | ID=Msa1132550-mRNA-1;Parent=Msa1132550;Name=Msa1132550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.33|0.66|1|1|3|302|462 |
| chr7_3 | exon | 85423115 | 85423298 | 85423115 | ID=Msa1132550-mRNA-1:exon:25551;Parent=Msa1132550-mRNA-1 |
| chr7_3 | exon | 85423757 | 85423887 | 85423757 | ID=Msa1132550-mRNA-1:exon:25552;Parent=Msa1132550-mRNA-1 |
| chr7_3 | exon | 85424656 | 85426031 | 85424656 | ID=Msa1132550-mRNA-1:exon:25553;Parent=Msa1132550-mRNA-1 |
| chr7_3 | CDS | 85423115 | 85423298 | 85423115 | ID=Msa1132550-mRNA-1:cds;Parent=Msa1132550-mRNA-1 |
| chr7_3 | CDS | 85423757 | 85423887 | 85423757 | ID=Msa1132550-mRNA-1:cds;Parent=Msa1132550-mRNA-1 |
| chr7_3 | CDS | 85424656 | 85425729 | 85424656 | ID=Msa1132550-mRNA-1:cds;Parent=Msa1132550-mRNA-1 |
| chr7_3 | three_prime_UTR | 85425730 | 85426031 | 85425730 | ID=Msa1132550-mRNA-1:three_prime_utr;Parent=Msa1132550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
