Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142070 | XP_003629671.2 | 98.194 | 443 | 5 | 1 | 1 | 440 | 1 | 443 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142070 | sp|Q8R3D1|TBC13_MOUSE | 35.433 | 381 | 193 | 11 | 103 | 436 | 23 | 397 | 5.64e-62 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142070 | G7LHV3 | 98.194 | 443 | 5 | 1 | 1 | 440 | 1 | 443 | 0.0 | 894 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142070 | Msa0656850 | 0.868262 | 7.440549e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142070 | MtrunA17_Chr8g0378291 | 98.194 | 443 | 5 | 1 | 1 | 440 | 1 | 443 | 0.0 | 894 |
| Msa0142070 | MtrunA17_Chr3g0121451 | 71.136 | 440 | 119 | 2 | 1 | 440 | 1 | 432 | 0.0 | 644 |
| Msa0142070 | MtrunA17_Chr4g0063771 | 61.134 | 247 | 95 | 1 | 187 | 432 | 48 | 294 | 4.42e-109 | 324 |
| Msa0142070 | MtrunA17_Chr4g0033831 | 25.946 | 370 | 205 | 8 | 71 | 427 | 116 | 429 | 1.52e-27 | 114 |
| Msa0142070 | MtrunA17_Chr2g0329691 | 26.316 | 342 | 183 | 8 | 96 | 424 | 134 | 419 | 3.43e-25 | 107 |
| Msa0142070 | MtrunA17_Chr1g0183581 | 29.054 | 296 | 162 | 10 | 106 | 387 | 68 | 329 | 2.96e-24 | 104 |
| Msa0142070 | MtrunA17_Chr4g0064141 | 27.160 | 324 | 168 | 11 | 99 | 417 | 351 | 611 | 2.04e-22 | 100 |
| Msa0142070 | MtrunA17_Chr4g0041821 | 27.682 | 289 | 176 | 9 | 104 | 379 | 54 | 322 | 2.88e-20 | 92.8 |
| Msa0142070 | MtrunA17_Chr2g0319591 | 26.712 | 292 | 178 | 8 | 104 | 379 | 55 | 326 | 2.52e-18 | 87.0 |
| Msa0142070 | MtrunA17_Chr2g0329651 | 30.189 | 159 | 88 | 5 | 223 | 379 | 378 | 515 | 4.45e-15 | 77.8 |
| Msa0142070 | MtrunA17_Chr1g0146661 | 25.405 | 185 | 101 | 6 | 248 | 412 | 387 | 554 | 4.75e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142070 | AT4G13730.1 | 67.136 | 426 | 110 | 4 | 39 | 438 | 28 | 449 | 0.0 | 596 |
| Msa0142070 | AT1G04830.1 | 63.087 | 447 | 150 | 3 | 1 | 436 | 1 | 443 | 0.0 | 583 |
| Msa0142070 | AT4G13730.3 | 65.728 | 426 | 105 | 5 | 39 | 438 | 28 | 438 | 0.0 | 577 |
| Msa0142070 | AT1G04830.2 | 62.557 | 438 | 149 | 3 | 1 | 427 | 1 | 434 | 0.0 | 568 |
| Msa0142070 | AT4G13730.2 | 65.067 | 375 | 101 | 4 | 39 | 387 | 28 | 398 | 2.85e-178 | 504 |
| Msa0142070 | AT1G04830.3 | 56.376 | 447 | 137 | 4 | 1 | 436 | 1 | 400 | 1.16e-172 | 490 |
| Msa0142070 | AT2G30710.1 | 27.616 | 344 | 180 | 8 | 96 | 426 | 126 | 413 | 3.07e-27 | 113 |
| Msa0142070 | AT4G28550.3 | 28.620 | 297 | 182 | 9 | 101 | 394 | 57 | 326 | 3.10e-25 | 106 |
| Msa0142070 | AT4G28550.2 | 29.181 | 281 | 169 | 9 | 101 | 378 | 57 | 310 | 1.14e-24 | 104 |
| Msa0142070 | AT4G28550.1 | 29.078 | 282 | 170 | 9 | 101 | 379 | 57 | 311 | 2.47e-24 | 105 |
| Msa0142070 | AT2G20440.3 | 27.083 | 288 | 168 | 10 | 101 | 379 | 57 | 311 | 1.60e-23 | 101 |
| Msa0142070 | AT2G20440.1 | 27.083 | 288 | 168 | 10 | 101 | 379 | 57 | 311 | 4.82e-23 | 101 |
| Msa0142070 | AT2G20440.2 | 27.083 | 288 | 168 | 10 | 101 | 379 | 57 | 311 | 4.82e-23 | 101 |
| Msa0142070 | AT2G20440.4 | 31.677 | 161 | 92 | 4 | 219 | 379 | 53 | 195 | 1.65e-18 | 86.3 |
| Msa0142070 | AT4G27100.1 | 27.986 | 293 | 165 | 10 | 104 | 379 | 54 | 317 | 9.59e-18 | 85.5 |
| Msa0142070 | AT4G27100.2 | 27.986 | 293 | 165 | 10 | 104 | 379 | 54 | 317 | 1.01e-17 | 85.5 |
| Msa0142070 | AT5G52580.3 | 26.000 | 200 | 127 | 6 | 220 | 417 | 445 | 625 | 1.91e-16 | 82.4 |
| Msa0142070 | AT5G52580.2 | 26.000 | 200 | 127 | 6 | 220 | 417 | 456 | 636 | 1.96e-16 | 82.4 |
| Msa0142070 | AT5G54780.1 | 31.579 | 171 | 96 | 5 | 217 | 384 | 171 | 323 | 2.06e-16 | 81.3 |
| Msa0142070 | AT5G52580.1 | 26.000 | 200 | 127 | 6 | 220 | 417 | 439 | 619 | 2.09e-16 | 82.0 |
| Msa0142070 | AT3G59570.1 | 27.473 | 182 | 107 | 7 | 223 | 400 | 369 | 529 | 1.28e-14 | 76.6 |
| Msa0142070 | AT3G59570.3 | 27.473 | 182 | 107 | 7 | 223 | 400 | 369 | 529 | 1.42e-14 | 76.6 |
| Msa0142070 | AT3G59570.2 | 27.473 | 182 | 107 | 7 | 223 | 400 | 369 | 529 | 1.65e-14 | 76.3 |
Find 117 sgRNAs with CRISPR-Local
Find 453 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTGACAGCCTTCATATT+TGG | 0.129257 | 1_4:-879149 | Msa0142070:CDS |
| GGAGGTTGGGGAGGTGAAAT+TGG | 0.209496 | 1_4:+883994 | None:intergenic |
| TTTCGTGTACAGTCAGTCTA+AGG | 0.270139 | 1_4:-878464 | Msa0142070:exon |
| CCAAGGGATGAATGAGTTAT+TGG | 0.275612 | 1_4:-881977 | Msa0142070:CDS |
| TGACTGTACACGAAACTTAT+TGG | 0.277194 | 1_4:+878472 | None:intergenic |
| ATCCCCAATTCTATGCATTT+AGG | 0.289787 | 1_4:-879206 | Msa0142070:CDS |
| TGCTGACAGCCTTCATATTT+GGG | 0.302632 | 1_4:-879148 | Msa0142070:CDS |
| TCCACCTAAATGCATAGAAT+TGG | 0.362457 | 1_4:+879202 | None:intergenic |
| CCACCTAAATGCATAGAATT+GGG | 0.363506 | 1_4:+879203 | None:intergenic |
| CAAGGTGTGCCTGATTCTGC+TGG | 0.370235 | 1_4:-883696 | Msa0142070:CDS |
| GTGGTGGTGGTAGCCGCGGC+GGG | 0.372911 | 1_4:+884054 | None:intergenic |
| GATGGGAGGAGACGGAGGTT+GGG | 0.375456 | 1_4:+883981 | None:intergenic |
| ATGAGCATCCTTTGAGTCTT+GGG | 0.382293 | 1_4:-882837 | Msa0142070:CDS |
| GATTGTACCTGTGGACCCTC+TGG | 0.387698 | 1_4:+879108 | None:intergenic |
| GAACGTATCCCAGCAGAATC+AGG | 0.398899 | 1_4:+883687 | None:intergenic |
| GGTGGTGGTAGCCGCGGCGG+GGG | 0.399551 | 1_4:+884056 | None:intergenic |
| ATGGGAGGAGACGGAGGTTG+GGG | 0.399846 | 1_4:+883982 | None:intergenic |
| CCTTGGACATACTTTACTCC+TGG | 0.415852 | 1_4:+881994 | None:intergenic |
| AATTGAATTCCTGAGTCAAT+AGG | 0.428026 | 1_4:+879172 | None:intergenic |
| CGATGGGAGGAGACGGAGGT+TGG | 0.428180 | 1_4:+883980 | None:intergenic |
| GAGAGAGCTGTTAAGCCAAT+CGG | 0.429636 | 1_4:+884104 | None:intergenic |
| GATGAGCATCCTTTGAGTCT+TGG | 0.430115 | 1_4:-882838 | Msa0142070:CDS |
| GGAGGAGACGGAGGTTGGGG+AGG | 0.432198 | 1_4:+883985 | None:intergenic |
| GGTGGTGGTGGTAGCCGCGG+CGG | 0.442943 | 1_4:+884053 | None:intergenic |
| GAGCAAGGCCCTGTCACGTT+TGG | 0.443402 | 1_4:+882882 | None:intergenic |
| CAACTAGACAATAGTGTTGT+GGG | 0.444669 | 1_4:-879854 | Msa0142070:CDS |
| GGATTCTTCGGTGGTGGTGG+TGG | 0.445126 | 1_4:+884032 | None:intergenic |
| TTAGAGTCATTTACAAACAT+TGG | 0.446330 | 1_4:+878390 | None:intergenic |
| TGTAAATGACTCTAAATTTG+AGG | 0.447123 | 1_4:-878382 | Msa0142070:three_prime_UTR |
| TTCTTCGGTGGTGGTGGTGG+TGG | 0.447749 | 1_4:+884035 | None:intergenic |
| ATGATGCCGCCAAACGTGAC+AGG | 0.452162 | 1_4:-882891 | Msa0142070:CDS |
| GAGGTTGGGGAGGTGAAATT+GGG | 0.454258 | 1_4:+883995 | None:intergenic |
| TGGTGGTGGTAGCCGCGGCG+GGG | 0.455632 | 1_4:+884055 | None:intergenic |
| CCAATAACTCATTCATCCCT+TGG | 0.457394 | 1_4:+881977 | None:intergenic |
| TTCTGCAGGAGACTCTTCTC+CGG | 0.461362 | 1_4:-878613 | Msa0142070:intron |
| GGTGAAATTGGGCTGTGGAC+GGG | 0.462866 | 1_4:+884006 | None:intergenic |
| ATTCGCAAGCGCCTCCTAGC+GGG | 0.468068 | 1_4:-878566 | Msa0142070:CDS |
| GAGCAAATGGCTAATGTTTG+TGG | 0.469058 | 1_4:+878502 | None:intergenic |
| AGGATGTACAACTCCACTAT+TGG | 0.471200 | 1_4:-882922 | Msa0142070:CDS |
| TATTGGCAACATAGAGCAAA+TGG | 0.475487 | 1_4:+878489 | None:intergenic |
| CAAGGCCCTGTCACGTTTGG+CGG | 0.478192 | 1_4:+882885 | None:intergenic |
| ATCATCAGCATCACCAATAG+TGG | 0.481244 | 1_4:+882909 | None:intergenic |
| GAGATACAAAAGCAAAATGC+GGG | 0.485520 | 1_4:+878431 | None:intergenic |
| AGAGGATTCTTCGGTGGTGG+TGG | 0.488706 | 1_4:+884029 | None:intergenic |
| TGATGGATATGCGGGAATTG+AGG | 0.491397 | 1_4:-883731 | Msa0142070:CDS |
| TTTGGTTCAGTTGTCGAAGA+AGG | 0.493660 | 1_4:-883754 | Msa0142070:intron |
| TTCCACCGGATCGAGCGCTT+TGG | 0.498866 | 1_4:-883407 | Msa0142070:CDS |
| AGGTGAAATTGGGCTGTGGA+CGG | 0.501179 | 1_4:+884005 | None:intergenic |
| ATTGGCTTAACAGCTCTCTC+TGG | 0.514874 | 1_4:-884101 | Msa0142070:CDS |
| TCTGCAGGAGACTCTTCTCC+GGG | 0.520583 | 1_4:-878612 | Msa0142070:intron |
| AGAGAGCTGTTAAGCCAATC+GGG | 0.522903 | 1_4:+884105 | None:intergenic |
| GGGAGAGGATTCTTCGGTGG+TGG | 0.524785 | 1_4:+884026 | None:intergenic |
| AAGGAGGCACATCGTGGTCA+TGG | 0.525068 | 1_4:+883902 | None:intergenic |
| TGTATGGAATCAGTTCTTCC+AGG | 0.526492 | 1_4:-882806 | Msa0142070:intron |
| AATTGGGCTGTGGACGGGAG+AGG | 0.526572 | 1_4:+884011 | None:intergenic |
| AAAGAGTGTCCCAAATATGA+AGG | 0.535343 | 1_4:+879139 | None:intergenic |
| GATGAGTGCGCTTTACATCT+CGG | 0.537521 | 1_4:+882209 | None:intergenic |
| GTGGACGGGAGAGGATTCTT+CGG | 0.540862 | 1_4:+884020 | None:intergenic |
| CCCAATTCTATGCATTTAGG+TGG | 0.542027 | 1_4:-879203 | Msa0142070:CDS |
| GATGACCAAAGCGCTCGATC+CGG | 0.543453 | 1_4:+883402 | None:intergenic |
| TCAATTATCTGCTTAGGCGG+AGG | 0.544656 | 1_4:+883946 | None:intergenic |
| CCAGGAGTAAAGTATGTCCA+AGG | 0.545746 | 1_4:-881994 | Msa0142070:CDS |
| GTCTTGGGAAGACCAGTGTA+TGG | 0.548559 | 1_4:-882822 | Msa0142070:CDS |
| AATGGCTAATGTTTGTGGAC+GGG | 0.557969 | 1_4:+878507 | None:intergenic |
| ATTGTACCTGTGGACCCTCT+GGG | 0.559228 | 1_4:+879109 | None:intergenic |
| AGGTGACCCAGAGGGTCCAC+AGG | 0.559474 | 1_4:-879115 | Msa0142070:intron |
| GAAGAAGGTGATGGATATGC+GGG | 0.560352 | 1_4:-883739 | Msa0142070:CDS |
| GAATCTTCAATTATCTGCTT+AGG | 0.560421 | 1_4:+883940 | None:intergenic |
| GACCAAAGCGCTCGATCCGG+TGG | 0.561984 | 1_4:+883405 | None:intergenic |
| CGGAGGATCTTGAACTACGA+TGG | 0.565129 | 1_4:+883963 | None:intergenic |
| ACAACTAGACAATAGTGTTG+TGG | 0.571818 | 1_4:-879855 | Msa0142070:CDS |
| TGAAGAAGAAAGTTCCCGAT+TGG | 0.572438 | 1_4:-884119 | Msa0142070:CDS |
| CTGGGATACGTTCTACATTG+TGG | 0.573104 | 1_4:-883677 | Msa0142070:CDS |
| TAAATTTGCAAAATCTAACC+AGG | 0.575295 | 1_4:-882158 | Msa0142070:intron |
| TTTGCTTGGATATCTTCCAC+CGG | 0.578588 | 1_4:-883421 | Msa0142070:CDS |
| TCAGTTGTCGAAGAAGGTGA+TGG | 0.579146 | 1_4:-883748 | Msa0142070:intron |
| CTGGTCTTCCCAAGACTCAA+AGG | 0.582046 | 1_4:+882829 | None:intergenic |
| AAATGGCTAATGTTTGTGGA+CGG | 0.587156 | 1_4:+878506 | None:intergenic |
| AAGGTGTGCCTGATTCTGCT+GGG | 0.588507 | 1_4:-883695 | Msa0142070:CDS |
| GGGGAGGTGAAATTGGGCTG+TGG | 0.597013 | 1_4:+884001 | None:intergenic |
| TGATGCCGCCAAACGTGACA+GGG | 0.597721 | 1_4:-882890 | Msa0142070:CDS |
| CACCTAAATGCATAGAATTG+GGG | 0.597939 | 1_4:+879204 | None:intergenic |
| TTCGTGTACAGTCAGTCTAA+GGG | 0.598813 | 1_4:-878463 | Msa0142070:exon |
| TGAACTACGATGGGAGGAGA+CGG | 0.599786 | 1_4:+883973 | None:intergenic |
| ATCGTGGTCATGGTGATCGT+CGG | 0.601526 | 1_4:+883912 | None:intergenic |
| GATCACTCTCCTATTGACTC+AGG | 0.601704 | 1_4:-879181 | Msa0142070:CDS |
| AATTTCTGATCTAGAGAGCA+AGG | 0.603350 | 1_4:+882867 | None:intergenic |
| CGAAGAAGGTGATGGATATG+CGG | 0.604704 | 1_4:-883740 | Msa0142070:CDS |
| GAAAACATGATGAAGAGTTG+TGG | 0.605842 | 1_4:-879793 | Msa0142070:CDS |
| TTGAAGTGAAATCACCCGCT+AGG | 0.608053 | 1_4:+878552 | None:intergenic |
| GGAGGATCTTGAACTACGAT+GGG | 0.609089 | 1_4:+883964 | None:intergenic |
| GAACGCATCAGCTTCAGCAA+AGG | 0.610521 | 1_4:+879925 | None:intergenic |
| ATGGTGAGAGACGTCGTAAG+CGG | 0.612342 | 1_4:+883879 | None:intergenic |
| CTCAAAGGATGCTCATCATG+AGG | 0.616214 | 1_4:+882844 | None:intergenic |
| CATTCGCAAGCGCCTCCTAG+CGG | 0.617934 | 1_4:-878567 | Msa0142070:CDS |
| CTAGCTAGTCAGAAATCACA+AGG | 0.621456 | 1_4:-882945 | Msa0142070:intron |
| TTAGCATTGCACAACACACC+CGG | 0.621818 | 1_4:+878594 | None:intergenic |
| CATCTGAATTAGCTAAGAAG+AGG | 0.622349 | 1_4:-883383 | Msa0142070:CDS |
| TCTTCAATTATCTGCTTAGG+CGG | 0.629345 | 1_4:+883943 | None:intergenic |
| TGAGAGACGTCGTAAGCGGA+AGG | 0.629928 | 1_4:+883883 | None:intergenic |
| CCTCAGTCAATAATTGAGCA+TGG | 0.630182 | 1_4:+883860 | None:intergenic |
| AGAGATACAAAAGCAAAATG+CGG | 0.636518 | 1_4:+878430 | None:intergenic |
| AAGTGAAATCACCCGCTAGG+AGG | 0.642330 | 1_4:+878555 | None:intergenic |
| TTGAGGAGGATCTCATGTCA+AGG | 0.643029 | 1_4:-883714 | Msa0142070:CDS |
| TGGATATGCGGGAATTGAGG+AGG | 0.644082 | 1_4:-883728 | Msa0142070:CDS |
| CAGGAGTAAAGTATGTCCAA+GGG | 0.651387 | 1_4:-881993 | Msa0142070:CDS |
| GGATCTTGAACTACGATGGG+AGG | 0.652054 | 1_4:+883967 | None:intergenic |
| GATACGTTCTACATTGTGGA+AGG | 0.654463 | 1_4:-883673 | Msa0142070:intron |
| GACGGGAGAGGATTCTTCGG+TGG | 0.655523 | 1_4:+884023 | None:intergenic |
| ACAGTACAAACAGTTCAAAG+AGG | 0.670694 | 1_4:-883358 | Msa0142070:CDS |
| CCATGCTCAATTATTGACTG+AGG | 0.677781 | 1_4:-883860 | Msa0142070:intron |
| GAGACGTCGTAAGCGGAAGG+AGG | 0.685988 | 1_4:+883886 | None:intergenic |
| AGATACAAAAGCAAAATGCG+GGG | 0.688638 | 1_4:+878432 | None:intergenic |
| ACTACGATGGGAGGAGACGG+AGG | 0.699325 | 1_4:+883976 | None:intergenic |
| GAAGAACTGATTCCATACAC+TGG | 0.704179 | 1_4:+882810 | None:intergenic |
| AAGCGGAAGGAGGCACATCG+TGG | 0.724513 | 1_4:+883896 | None:intergenic |
| GCTAGTCAGAAATCACAAGG+AGG | 0.771386 | 1_4:-882942 | Msa0142070:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATTGTTAGTAATA+AGG | - | chr1_4:882531-882550 | Msa0142070:intron | 10.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_4:880087-880106 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_4:880086-880105 | Msa0142070:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr1_4:880110-880129 | Msa0142070:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr1_4:880213-880232 | Msa0142070:intron | 15.0% |
| !!! | TTTATATTACATATTTTCCT+AGG | - | chr1_4:880868-880887 | Msa0142070:intron | 15.0% |
| !! | AAAACTAAAGTAAAAAGATA+AGG | + | chr1_4:881584-881603 | None:intergenic | 15.0% |
| !!! | TTATCTTTTTACTTTAGTTT+TGG | - | chr1_4:881583-881602 | Msa0142070:intron | 15.0% |
| !!! | TTTATGTTCTCTTTTATTAT+TGG | - | chr1_4:882577-882596 | Msa0142070:intron | 15.0% |
| !! | TATATTAAAAACACTTACTT+TGG | + | chr1_4:882815-882834 | None:intergenic | 15.0% |
| !! | TATATTAAAAACTCTTACTT+TGG | + | chr1_4:882871-882890 | None:intergenic | 15.0% |
| !!! | ATTTGTTAAATAAACTAACA+TGG | - | chr1_4:883072-883091 | Msa0142070:intron | 15.0% |
| !! | CAATTATTTACAAAGTAAAT+CGG | + | chr1_4:883486-883505 | None:intergenic | 15.0% |
| !! | TTACTTTGTAAATAATTGAT+TGG | - | chr1_4:883488-883507 | Msa0142070:intron | 15.0% |
| !! | TTCTTAAAAGAACTTAAATT+GGG | - | chr1_4:883913-883932 | Msa0142070:CDS | 15.0% |
| !! | TTCAACGTATTTGTTTATTA+TGG | - | chr1_4:878747-878766 | Msa0142070:intron | 20.0% |
| !!! | CTATATGTTCTTTTTTGTTA+TGG | - | chr1_4:879056-879075 | Msa0142070:intron | 20.0% |
| !!! | TTCTATTTGCTTTATCTTTT+TGG | - | chr1_4:879577-879596 | Msa0142070:intron | 20.0% |
| !! | TTAAAAAGTCTAGAGATTAA+TGG | + | chr1_4:879931-879950 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr1_4:880053-880072 | Msa0142070:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_4:880096-880115 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1_4:880173-880192 | Msa0142070:intron | 20.0% |
| !! | TTAACAAGACATTACAAAAA+GGG | + | chr1_4:880758-880777 | None:intergenic | 20.0% |
| !! | GTTACACAAATTATTGTTAA+AGG | + | chr1_4:880896-880915 | None:intergenic | 20.0% |
| !! | AAGTGTATGCATAAATTAAA+GGG | - | chr1_4:881054-881073 | Msa0142070:intron | 20.0% |
| !!! | ACAATTTTGTAATAGTTGAA+CGG | + | chr1_4:882738-882757 | None:intergenic | 20.0% |
| !!! | ATTGATGGATAAACATAAAA+AGG | + | chr1_4:883198-883217 | None:intergenic | 20.0% |
| !! | AAATACATGGTTGAATAATT+TGG | + | chr1_4:883274-883293 | None:intergenic | 20.0% |
| !! | ATGGAAATAATAAGTTAGAT+TGG | - | chr1_4:883546-883565 | Msa0142070:intron | 20.0% |
| !! | GTTCTTAAAAGAACTTAAAT+TGG | - | chr1_4:883912-883931 | Msa0142070:CDS | 20.0% |
| !! | ATCGATGAATTTTACGTTTA+GGG | + | chr1_4:878409-878428 | None:intergenic | 25.0% |
| !! | AATCGATGAATTTTACGTTT+AGG | + | chr1_4:878410-878429 | None:intergenic | 25.0% |
| !! | TTCTTCTTCATCATTTTGAA+CGG | + | chr1_4:878434-878453 | None:intergenic | 25.0% |
| !!! | TGTTTGTGAGTTTTGATTTT+TGG | - | chr1_4:878770-878789 | Msa0142070:intron | 25.0% |
| ! | AATGTTATCATCTCAGATTA+TGG | - | chr1_4:879276-879295 | Msa0142070:intron | 25.0% |
| ! | ATGTTATCATCTCAGATTAT+GGG | - | chr1_4:879277-879296 | Msa0142070:intron | 25.0% |
| !!! | TACTGTTTTTTCTGTTACAT+TGG | - | chr1_4:879494-879513 | Msa0142070:intron | 25.0% |
| ! | TAAATTTGCAAAATCTAACC+AGG | - | chr1_4:880405-880424 | Msa0142070:intron | 25.0% |
| ! | ACAAAAATAAAGGAATAACC+TGG | + | chr1_4:880426-880445 | None:intergenic | 25.0% |
| !!! | AGGTTATTCCTTTATTTTTG+TGG | - | chr1_4:880425-880444 | Msa0142070:intron | 25.0% |
| !!! | TCCTTTATTTTTGTGGAAAT+TGG | - | chr1_4:880432-880451 | Msa0142070:intron | 25.0% |
| ! | ACCAATTTCCACAAAAATAA+AGG | + | chr1_4:880436-880455 | None:intergenic | 25.0% |
| !!! | TTATTTTTGCTGACATTTTC+AGG | - | chr1_4:880505-880524 | Msa0142070:intron | 25.0% |
| !! | TTTTTGAACACATAGAATAG+AGG | + | chr1_4:880614-880633 | None:intergenic | 25.0% |
| ! | TGTAATATTCTTCTCAATGA+TGG | + | chr1_4:880712-880731 | None:intergenic | 25.0% |
| ! | TAACAAGACATTACAAAAAG+GGG | + | chr1_4:880757-880776 | None:intergenic | 25.0% |
| ! | GTTAACAAGACATTACAAAA+AGG | + | chr1_4:880759-880778 | None:intergenic | 25.0% |
| ! | AATTATTGTTAAAGGTTCCT+AGG | + | chr1_4:880888-880907 | None:intergenic | 25.0% |
| !! | CTTTAATTTATGCATACACT+TGG | + | chr1_4:881055-881074 | None:intergenic | 25.0% |
| ! | CAAGTGTATGCATAAATTAA+AGG | - | chr1_4:881053-881072 | Msa0142070:intron | 25.0% |
| ! | AGTGTATGCATAAATTAAAG+GGG | - | chr1_4:881055-881074 | Msa0142070:intron | 25.0% |
| ! | GAGATGACAAATCAAAATTT+AGG | - | chr1_4:881095-881114 | Msa0142070:intron | 25.0% |
| ! | ATTCCAATCTATAAGAACAA+AGG | - | chr1_4:881143-881162 | Msa0142070:intron | 25.0% |
| ! | TTCCAATCTATAAGAACAAA+GGG | - | chr1_4:881144-881163 | Msa0142070:intron | 25.0% |
| !!! | ACACTTAGTTTTCATTGATT+TGG | - | chr1_4:881370-881389 | Msa0142070:intron | 25.0% |
| ! | TATTGTTATGGGAAAATCTA+CGG | + | chr1_4:881534-881553 | None:intergenic | 25.0% |
| ! | AGTAAAAAGATAAGGACTTA+GGG | + | chr1_4:881576-881595 | None:intergenic | 25.0% |
| ! | AAGTAAAAAGATAAGGACTT+AGG | + | chr1_4:881577-881596 | None:intergenic | 25.0% |
| ! | ATATTTAAACCGTGTAACTT+GGG | + | chr1_4:881846-881865 | None:intergenic | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | - | chr1_4:881849-881868 | Msa0142070:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr1_4:882171-882190 | Msa0142070:CDS | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | - | chr1_4:882313-882332 | Msa0142070:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr1_4:882353-882372 | None:intergenic | 25.0% |
| !! | TTGTTGTTGTATCAGTATAA+AGG | - | chr1_4:882437-882456 | Msa0142070:intron | 25.0% |
| !!! | TTTCGCTTTTAGTTTACATT+TGG | - | chr1_4:882900-882919 | Msa0142070:CDS | 25.0% |
| ! | ACATGGAATATACAAAAATG+CGG | - | chr1_4:883089-883108 | Msa0142070:intron | 25.0% |
| ! | CAAAATAACAATTCTAACAC+AGG | + | chr1_4:883151-883170 | None:intergenic | 25.0% |
| ! | ATTAAACAGTGTTTCAGTAA+TGG | - | chr1_4:883304-883323 | Msa0142070:intron | 25.0% |
| ! | AAACAATAGTCACTAAAAAC+TGG | + | chr1_4:883789-883808 | None:intergenic | 25.0% |
| ! | TCTTAAACTGTATATAGAAC+TGG | - | chr1_4:883831-883850 | Msa0142070:intron | 25.0% |
| ! | TTAGAGTCATTTACAAACAT+TGG | + | chr1_4:884176-884195 | None:intergenic | 25.0% |
| ! | TGTAAATGACTCTAAATTTG+AGG | - | chr1_4:884181-884200 | Msa0142070:five_prime_UTR | 25.0% |
| !! | AATTTTACGTTTAGGGTTTC+TGG | + | chr1_4:878402-878421 | None:intergenic | 30.0% |
| GAATCTTCAATTATCTGCTT+AGG | + | chr1_4:878626-878645 | None:intergenic | 30.0% | |
| !!! | GTGAGTTTTGATTTTTGGAA+TGG | - | chr1_4:878775-878794 | Msa0142070:intron | 30.0% |
| !!! | GGAATGGTTTGTTTTTGTTT+TGG | - | chr1_4:878791-878810 | Msa0142070:intron | 30.0% |
| !!! | TATTGATGTCTTGTTTTTCG+CGG | - | chr1_4:878965-878984 | Msa0142070:intron | 30.0% |
| ! | TGTATTGATGATTCCCAAAT+AGG | - | chr1_4:879015-879034 | Msa0142070:intron | 30.0% |
| ! | GTATTGATGATTCCCAAATA+GGG | - | chr1_4:879016-879035 | Msa0142070:intron | 30.0% |
| ! | TATTGATGATTCCCAAATAG+GGG | - | chr1_4:879017-879036 | Msa0142070:intron | 30.0% |
| ACTAACTAAATCCCCTATTT+GGG | + | chr1_4:879031-879050 | None:intergenic | 30.0% | |
| TACTAACTAAATCCCCTATT+TGG | + | chr1_4:879032-879051 | None:intergenic | 30.0% | |
| TGTTATCATCTCAGATTATG+GGG | - | chr1_4:879278-879297 | Msa0142070:intron | 30.0% | |
| ATTCTTTAATCGTGAGTTGT+TGG | - | chr1_4:879320-879339 | Msa0142070:intron | 30.0% | |
| ATGTAAGAACCAATAGAGAT+TGG | + | chr1_4:879398-879417 | None:intergenic | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1_4:880004-880023 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1_4:880005-880024 | Msa0142070:intron | 30.0% |
| TATAATGCTTTGGTATGCAA+AGG | - | chr1_4:880268-880287 | Msa0142070:intron | 30.0% | |
| AAAAACCAATAAGTTCATGC+TGG | + | chr1_4:880486-880505 | None:intergenic | 30.0% | |
| ! | ATTTTTGCGAAGTTAAATCC+AGG | - | chr1_4:880551-880570 | Msa0142070:intron | 30.0% |
| ! | AAAGCATGGATTACAAAAAG+AGG | + | chr1_4:880781-880800 | None:intergenic | 30.0% |
| TTAAATGTAAAGGAGACTAC+AGG | + | chr1_4:880814-880833 | None:intergenic | 30.0% | |
| AAGAATTACAGGTATGCATA+TGG | + | chr1_4:880972-880991 | None:intergenic | 30.0% | |
| TGGAAAAGGTAAAGAATTAC+AGG | + | chr1_4:880983-881002 | None:intergenic | 30.0% | |
| AAAACATGAAATTCTATGCG+TGG | + | chr1_4:881003-881022 | None:intergenic | 30.0% | |
| AAATATAAACCAGTGGAATG+AGG | + | chr1_4:881032-881051 | None:intergenic | 30.0% | |
| TCCAATCTATAAGAACAAAG+GGG | - | chr1_4:881145-881164 | Msa0142070:intron | 30.0% | |
| !!! | AGTTTTCATTGATTTGGAGA+AGG | - | chr1_4:881376-881395 | Msa0142070:intron | 30.0% |
| ! | GTAGATTTTCCCATAACAAT+AGG | - | chr1_4:881533-881552 | Msa0142070:intron | 30.0% |
| !!! | TTTAGTTTTGGATGTACTGA+CGG | - | chr1_4:881595-881614 | Msa0142070:intron | 30.0% |
| TATTTAAACCGTGTAACTTG+GGG | + | chr1_4:881845-881864 | None:intergenic | 30.0% | |
| GATATTTAAACCGTGTAACT+TGG | + | chr1_4:881847-881866 | None:intergenic | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | - | chr1_4:881848-881867 | Msa0142070:intron | 30.0% | |
| TATTCAAACTGTGGTTGAAA+TGG | - | chr1_4:881919-881938 | Msa0142070:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr1_4:882167-882186 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | + | chr1_4:882237-882256 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr1_4:882238-882257 | Msa0142070:CDS | 30.0% | |
| !!! | GTTTCTCGAATGGTTTTTTT+AGG | + | chr1_4:882296-882315 | None:intergenic | 30.0% |
| ! | TTTTCTAATGGTTTCTCGAA+TGG | + | chr1_4:882306-882325 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | + | chr1_4:882318-882337 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr1_4:882357-882376 | Msa0142070:intron | 30.0% |
| TAAGGAGTCATGTATGATTA+TGG | - | chr1_4:882549-882568 | Msa0142070:intron | 30.0% | |
| CATTTGGACATATATTGAGT+AGG | - | chr1_4:882916-882935 | Msa0142070:CDS | 30.0% | |
| !!! | ATTTTTTTGTTCGCACATTG+TGG | - | chr1_4:882995-883014 | Msa0142070:intron | 30.0% |
| TACTGTTATGCAATTGATTG+TGG | - | chr1_4:883022-883041 | Msa0142070:intron | 30.0% | |
| CATGGAATATACAAAAATGC+GGG | - | chr1_4:883090-883109 | Msa0142070:intron | 30.0% | |
| TTATCCATCAATTAAGCAAC+AGG | - | chr1_4:883206-883225 | Msa0142070:intron | 30.0% | |
| TATCCATCAATTAAGCAACA+GGG | - | chr1_4:883207-883226 | Msa0142070:intron | 30.0% | |
| !! | TTCAACCATGTATTTGCTAT+TGG | - | chr1_4:883279-883298 | Msa0142070:intron | 30.0% |
| AATAGCCAATAGCAAATACA+TGG | + | chr1_4:883287-883306 | None:intergenic | 30.0% | |
| AATTGAATTCCTGAGTCAAT+AGG | + | chr1_4:883394-883413 | None:intergenic | 30.0% | |
| ! | TTCCATCTTTTCTTCACAAT+CGG | + | chr1_4:883678-883697 | None:intergenic | 30.0% |
| TGAAGAAAAGATGGAAGATA+TGG | - | chr1_4:883682-883701 | Msa0142070:CDS | 30.0% | |
| TGCACAAAAGAAAATAAGGA+GGG | + | chr1_4:883744-883763 | None:intergenic | 30.0% | |
| ATGCACAAAAGAAAATAAGG+AGG | + | chr1_4:883745-883764 | None:intergenic | 30.0% | |
| CACATGCACAAAAGAAAATA+AGG | + | chr1_4:883748-883767 | None:intergenic | 30.0% | |
| TATACAGTTTAAGAAGCAAC+AGG | + | chr1_4:883825-883844 | None:intergenic | 30.0% | |
| AGAGATACAAAAGCAAAATG+CGG | + | chr1_4:884136-884155 | None:intergenic | 30.0% | |
| TCTTCAATTATCTGCTTAGG+CGG | + | chr1_4:878623-878642 | None:intergenic | 35.0% | |
| CGTTGAATCAGTTGTTAAAG+TGG | + | chr1_4:878734-878753 | None:intergenic | 35.0% | |
| AAAGAATGGAAATGCAGTGA+TGG | - | chr1_4:878989-879008 | Msa0142070:intron | 35.0% | |
| CATCTGAATTAGCTAAGAAG+AGG | - | chr1_4:879180-879199 | Msa0142070:CDS | 35.0% | |
| ACAGTACAAACAGTTCAAAG+AGG | - | chr1_4:879205-879224 | Msa0142070:CDS | 35.0% | |
| TTTAATCGTGAGTTGTTGGT+AGG | - | chr1_4:879324-879343 | Msa0142070:intron | 35.0% | |
| ACATCATCTCCAATCTCTAT+TGG | - | chr1_4:879386-879405 | Msa0142070:intron | 35.0% | |
| TGGTTCTTACATCAAACTAC+TGG | - | chr1_4:879406-879425 | Msa0142070:intron | 35.0% | |
| ! | TTACATCAAACTACTGGCTA+GGG | - | chr1_4:879412-879431 | Msa0142070:intron | 35.0% |
| AAGTCAACAAAGATTGCACT+TGG | + | chr1_4:879536-879555 | None:intergenic | 35.0% | |
| ! | AAGTGCAATCTTTGTTGACT+TGG | - | chr1_4:879535-879554 | Msa0142070:intron | 35.0% |
| AATTTCTGATCTAGAGAGCA+AGG | + | chr1_4:879699-879718 | None:intergenic | 35.0% | |
| AGATTCATTTGCATAGTACC+TGG | + | chr1_4:879778-879797 | None:intergenic | 35.0% | |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr1_4:880135-880154 | Msa0142070:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr1_4:880139-880158 | Msa0142070:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr1_4:880239-880258 | Msa0142070:intron | 35.0% |
| TCATTGCATTCTGTAGGATA+CGG | - | chr1_4:880312-880331 | Msa0142070:intron | 35.0% | |
| CCAGAGAAAAAATGCATATC+AGG | + | chr1_4:880379-880398 | None:intergenic | 35.0% | |
| !!! | CCTGATATGCATTTTTTCTC+TGG | - | chr1_4:880376-880395 | Msa0142070:intron | 35.0% |
| ! | CTTTTCCAGCATGAACTTAT+TGG | - | chr1_4:880478-880497 | Msa0142070:intron | 35.0% |
| !! | TTTTTGCTGACATTTTCAGG+AGG | - | chr1_4:880508-880527 | Msa0142070:intron | 35.0% |
| AAGGGGTTAACAAAACATCA+GGG | + | chr1_4:880740-880759 | None:intergenic | 35.0% | |
| AAAGGGGTTAACAAAACATC+AGG | + | chr1_4:880741-880760 | None:intergenic | 35.0% | |
| TATGGTGCTTCTGATTATCA+CGG | + | chr1_4:880954-880973 | None:intergenic | 35.0% | |
| TGAAATTCTATGCGTGGAAA+AGG | + | chr1_4:880997-881016 | None:intergenic | 35.0% | |
| CACTTGGAAATATAAACCAG+TGG | + | chr1_4:881039-881058 | None:intergenic | 35.0% | |
| AATTAAAGGGGAAGCCATAA+TGG | - | chr1_4:881067-881086 | Msa0142070:intron | 35.0% | |
| ATTAAAGGGGAAGCCATAAT+GGG | - | chr1_4:881068-881087 | Msa0142070:intron | 35.0% | |
| TCCCCTTTGTTCTTATAGAT+TGG | + | chr1_4:881149-881168 | None:intergenic | 35.0% | |
| TACAACATTGCGCGAATTAT+AGG | - | chr1_4:881171-881190 | Msa0142070:intron | 35.0% | |
| ACAACATTGCGCGAATTATA+GGG | - | chr1_4:881172-881191 | Msa0142070:intron | 35.0% | |
| TGAGTCATACCATGAAGTTA+TGG | - | chr1_4:881207-881226 | Msa0142070:intron | 35.0% | |
| GAGTCATACCATGAAGTTAT+GGG | - | chr1_4:881208-881227 | Msa0142070:intron | 35.0% | |
| ATACCATGAAGTTATGGGAA+AGG | - | chr1_4:881213-881232 | Msa0142070:intron | 35.0% | |
| TACCATGAAGTTATGGGAAA+GGG | - | chr1_4:881214-881233 | Msa0142070:intron | 35.0% | |
| TTACGTACGGATAACCAATT+TGG | - | chr1_4:881270-881289 | Msa0142070:intron | 35.0% | |
| !! | ATCCTGGATAGCTCTAATAT+AGG | + | chr1_4:881465-881484 | None:intergenic | 35.0% |
| ATATTAGAGCTATCCAGGAT+AGG | - | chr1_4:881465-881484 | Msa0142070:intron | 35.0% | |
| TACATCTTTGTGCTAACTCT+TGG | + | chr1_4:881628-881647 | None:intergenic | 35.0% | |
| TGGAATGTAACTTCAGCAAA+AGG | - | chr1_4:881774-881793 | Msa0142070:intron | 35.0% | |
| ATTTAAACCGTGTAACTTGG+GGG | + | chr1_4:881844-881863 | None:intergenic | 35.0% | |
| !! | TTCTCCGTCATTTTGTACTA+TGG | + | chr1_4:881876-881895 | None:intergenic | 35.0% |
| ACATCATCGTATTCAAACTG+TGG | - | chr1_4:881910-881929 | Msa0142070:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | - | chr1_4:881972-881991 | Msa0142070:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr1_4:881981-882000 | None:intergenic | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr1_4:882160-882179 | Msa0142070:CDS | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr1_4:882180-882199 | Msa0142070:CDS | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr1_4:882185-882204 | Msa0142070:CDS | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr1_4:882241-882260 | Msa0142070:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr1_4:882325-882344 | Msa0142070:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr1_4:882337-882356 | Msa0142070:intron | 35.0% |
| TATAAAGGTAGCATTGCTCA+CGG | - | chr1_4:882452-882471 | Msa0142070:intron | 35.0% | |
| AAGGCCTGCATATTGTAATA+GGG | + | chr1_4:882622-882641 | None:intergenic | 35.0% | |
| AAAGGCCTGCATATTGTAAT+AGG | + | chr1_4:882623-882642 | None:intergenic | 35.0% | |
| !! | TGTTTTGTTGAGCTATTGAG+TGG | - | chr1_4:882664-882683 | Msa0142070:intron | 35.0% |
| !! | GTTTTGTTGAGCTATTGAGT+GGG | - | chr1_4:882665-882684 | Msa0142070:intron | 35.0% |
| ACAACTAGACAATAGTGTTG+TGG | - | chr1_4:882708-882727 | Msa0142070:intron | 35.0% | |
| CAACTAGACAATAGTGTTGT+GGG | - | chr1_4:882709-882728 | Msa0142070:intron | 35.0% | |
| GAAAACATGATGAAGAGTTG+TGG | - | chr1_4:882770-882789 | Msa0142070:intron | 35.0% | |
| TATCATCAAAGCAATGAAGC+AGG | + | chr1_4:883122-883141 | None:intergenic | 35.0% | |
| ATCCCCAATTCTATGCATTT+AGG | - | chr1_4:883357-883376 | Msa0142070:CDS | 35.0% | |
| CACCTAAATGCATAGAATTG+GGG | + | chr1_4:883362-883381 | None:intergenic | 35.0% | |
| CCACCTAAATGCATAGAATT+GGG | + | chr1_4:883363-883382 | None:intergenic | 35.0% | |
| TCCACCTAAATGCATAGAAT+TGG | + | chr1_4:883364-883383 | None:intergenic | 35.0% | |
| !! | AAAGAGTGTCCCAAATATGA+AGG | + | chr1_4:883427-883446 | None:intergenic | 35.0% |
| !! | CATATTTGGGACACTCTTTT+AGG | - | chr1_4:883428-883447 | Msa0142070:intron | 35.0% |
| AATGGCTCATGTTTCTTTGA+TGG | - | chr1_4:883527-883546 | Msa0142070:intron | 35.0% | |
| ! | TAGTGTCAATTTGCTCATAC+TGG | - | chr1_4:883592-883611 | Msa0142070:intron | 35.0% |
| CTACTCTTATTCCACTTTAG+AGG | - | chr1_4:883649-883668 | Msa0142070:intron | 35.0% | |
| ! | TCCATCTTTTCTTCACAATC+GGG | + | chr1_4:883677-883696 | None:intergenic | 35.0% |
| GGAAGATATGGCCATATTAT+CGG | - | chr1_4:883694-883713 | Msa0142070:CDS | 35.0% | |
| GAAGATATGGCCATATTATC+GGG | - | chr1_4:883695-883714 | Msa0142070:CDS | 35.0% | |
| GTTCTAATGTCCCGATAATA+TGG | + | chr1_4:883708-883727 | None:intergenic | 35.0% | |
| ATCGGGAAGTTAATGAGTTT+GGG | - | chr1_4:883870-883889 | Msa0142070:CDS | 35.0% | |
| AAATGGCTAATGTTTGTGGA+CGG | + | chr1_4:884060-884079 | None:intergenic | 35.0% | |
| TATTGGCAACATAGAGCAAA+TGG | + | chr1_4:884077-884096 | None:intergenic | 35.0% | |
| TGACTGTACACGAAACTTAT+TGG | + | chr1_4:884094-884113 | None:intergenic | 35.0% | |
| AGATACAAAAGCAAAATGCG+GGG | + | chr1_4:884134-884153 | None:intergenic | 35.0% | |
| GAGATACAAAAGCAAAATGC+GGG | + | chr1_4:884135-884154 | None:intergenic | 35.0% | |
| TGAAGAAGAAAGTTCCCGAT+TGG | - | chr1_4:878444-878463 | Msa0142070:three_prime_UTR | 40.0% | |
| CCTCAGTCAATAATTGAGCA+TGG | + | chr1_4:878706-878725 | None:intergenic | 40.0% | |
| ! | CCATGCTCAATTATTGACTG+AGG | - | chr1_4:878703-878722 | Msa0142070:intron | 40.0% |
| ! | TTTGGTTCAGTTGTCGAAGA+AGG | - | chr1_4:878809-878828 | Msa0142070:intron | 40.0% |
| GATACGTTCTACATTGTGGA+AGG | - | chr1_4:878890-878909 | Msa0142070:intron | 40.0% | |
| !! | TTGTTTTTCGCGGCAAAGAA+TGG | - | chr1_4:878975-878994 | Msa0142070:intron | 40.0% |
| ! | TGATGTTTGCAGCTTTTGCT+TGG | - | chr1_4:879128-879147 | Msa0142070:CDS | 40.0% |
| TTTGCTTGGATATCTTCCAC+CGG | - | chr1_4:879142-879161 | Msa0142070:CDS | 40.0% | |
| ATCCTGTAAGTCAACTGCTT+AGG | - | chr1_4:879240-879259 | Msa0142070:intron | 40.0% | |
| ! | TTCCTAAGCAGTTGACTTAC+AGG | + | chr1_4:879245-879264 | None:intergenic | 40.0% |
| TATCATCTCAGATTATGGGG+TGG | - | chr1_4:879281-879300 | Msa0142070:intron | 40.0% | |
| ! | CTTACATCAAACTACTGGCT+AGG | - | chr1_4:879411-879430 | Msa0142070:intron | 40.0% |
| ! | TACATCAAACTACTGGCTAG+GGG | - | chr1_4:879413-879432 | Msa0142070:intron | 40.0% |
| GGGGAAGAGAGATAATTCTA+AGG | - | chr1_4:879432-879451 | Msa0142070:intron | 40.0% | |
| CTAGCTAGTCAGAAATCACA+AGG | - | chr1_4:879618-879637 | Msa0142070:intron | 40.0% | |
| AGGATGTACAACTCCACTAT+TGG | - | chr1_4:879641-879660 | Msa0142070:intron | 40.0% | |
| ATCATCAGCATCACCAATAG+TGG | + | chr1_4:879657-879676 | None:intergenic | 40.0% | |
| ATGAGCATCCTTTGAGTCTT+GGG | - | chr1_4:879726-879745 | Msa0142070:intron | 40.0% | |
| ! | GAAGAACTGATTCCATACAC+TGG | + | chr1_4:879756-879775 | None:intergenic | 40.0% |
| TGTATGGAATCAGTTCTTCC+AGG | - | chr1_4:879757-879776 | Msa0142070:intron | 40.0% | |
| ATGAAGTCACTGATCATGCA+TGG | - | chr1_4:879827-879846 | Msa0142070:CDS | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_4:880243-880262 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr1_4:880138-880157 | Msa0142070:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_4:880243-880262 | Msa0142070:intron | 40.0% |
| GTATCCTACAGAATGCAATG+AGG | + | chr1_4:880313-880332 | None:intergenic | 40.0% | |
| CAGGAGTAAAGTATGTCCAA+GGG | - | chr1_4:880570-880589 | Msa0142070:intron | 40.0% | |
| CCAATAACTCATTCATCCCT+TGG | + | chr1_4:880589-880608 | None:intergenic | 40.0% | |
| CCAAGGGATGAATGAGTTAT+TGG | - | chr1_4:880586-880605 | Msa0142070:intron | 40.0% | |
| ! | TCACTGCATTTTCTTCGTCT+GGG | + | chr1_4:880640-880659 | None:intergenic | 40.0% |
| AATGTAAAGGAGACTACAGG+TGG | + | chr1_4:880811-880830 | None:intergenic | 40.0% | |
| ATGGTGCTTCTGATTATCAC+GGG | + | chr1_4:880953-880972 | None:intergenic | 40.0% | |
| TTTCTGTTTCCTCATTCCAC+TGG | - | chr1_4:881020-881039 | Msa0142070:intron | 40.0% | |
| TTAAAGGGGAAGCCATAATG+GGG | - | chr1_4:881069-881088 | Msa0142070:intron | 40.0% | |
| CAACATTGCGCGAATTATAG+GGG | - | chr1_4:881173-881192 | Msa0142070:intron | 40.0% | |
| AAAGAGACTCACGTTACGTA+CGG | - | chr1_4:881257-881276 | Msa0142070:intron | 40.0% | |
| !!! | AACCAATTTGGTTTTGTGCC+TGG | - | chr1_4:881282-881301 | Msa0142070:intron | 40.0% |
| !!! | ACCAATTTGGTTTTGTGCCT+GGG | - | chr1_4:881283-881302 | Msa0142070:intron | 40.0% |
| ! | GAGTACCTAGAGAGATTTTG+TGG | - | chr1_4:881408-881427 | Msa0142070:intron | 40.0% |
| GCTTTCCACAAAATCTCTCT+AGG | + | chr1_4:881416-881435 | None:intergenic | 40.0% | |
| TGCCTATATTAGAGCTATCC+AGG | - | chr1_4:881460-881479 | Msa0142070:intron | 40.0% | |
| TGGTGCAGTCCTATTGTTAT+GGG | + | chr1_4:881545-881564 | None:intergenic | 40.0% | |
| TTGGTGCAGTCCTATTGTTA+TGG | + | chr1_4:881546-881565 | None:intergenic | 40.0% | |
| ATAACAATAGGACTGCACCA+AGG | - | chr1_4:881545-881564 | Msa0142070:intron | 40.0% | |
| TAACAATAGGACTGCACCAA+GGG | - | chr1_4:881546-881565 | Msa0142070:intron | 40.0% | |
| TAGAAGCAAGACGGAGTATA+TGG | - | chr1_4:881754-881773 | Msa0142070:intron | 40.0% | |
| AACTTCAGCAAAAGGAGAAG+TGG | - | chr1_4:881782-881801 | Msa0142070:intron | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+GGG | - | chr1_4:881783-881802 | Msa0142070:intron | 40.0% | |
| ATATCATCCCCCAAGTTACA+CGG | - | chr1_4:881834-881853 | Msa0142070:intron | 40.0% | |
| GGGTCCATAGTACAAAATGA+CGG | - | chr1_4:881869-881888 | Msa0142070:intron | 40.0% | |
| CACTTACTTTACTCTCGTGT+TGG | + | chr1_4:882053-882072 | None:intergenic | 40.0% | |
| CGAGAGTAAAGTAAGTGTAG+CGG | - | chr1_4:882056-882075 | Msa0142070:intron | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | - | chr1_4:882109-882128 | Msa0142070:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | + | chr1_4:882228-882247 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | - | chr1_4:882266-882285 | Msa0142070:intron | 40.0% | |
| ATAAAGGTAGCATTGCTCAC+GGG | - | chr1_4:882453-882472 | Msa0142070:intron | 40.0% | |
| ! | CTTGCTGTGATGTATGATCA+CGG | - | chr1_4:882492-882511 | Msa0142070:intron | 40.0% |
| TTGCTGTGATGTATGATCAC+GGG | - | chr1_4:882493-882512 | Msa0142070:intron | 40.0% | |
| AGCTCCCTATTACAATATGC+AGG | - | chr1_4:882615-882634 | Msa0142070:intron | 40.0% | |
| CATCAATTAAGCAACAGGGA+GGG | - | chr1_4:883211-883230 | Msa0142070:intron | 40.0% | |
| ATCAATTAAGCAACAGGGAG+GGG | - | chr1_4:883212-883231 | Msa0142070:intron | 40.0% | |
| CCCAATTCTATGCATTTAGG+TGG | - | chr1_4:883360-883379 | Msa0142070:CDS | 40.0% | |
| TTGCTGACAGCCTTCATATT+TGG | - | chr1_4:883414-883433 | Msa0142070:CDS | 40.0% | |
| TGCTGACAGCCTTCATATTT+GGG | - | chr1_4:883415-883434 | Msa0142070:CDS | 40.0% | |
| GGCATGTAGCATTTCAGTAA+TGG | - | chr1_4:883509-883528 | Msa0142070:intron | 40.0% | |
| TCCCGATTGTGAAGAAAAGA+TGG | - | chr1_4:883673-883692 | Msa0142070:intron | 40.0% | |
| CTGTATATAGAACTGGTGAG+TGG | - | chr1_4:883838-883857 | Msa0142070:intron | 40.0% | |
| GATCGGGAAGTTAATGAGTT+TGG | - | chr1_4:883869-883888 | Msa0142070:CDS | 40.0% | |
| AAACTGACACAATGTTCTGC+AGG | - | chr1_4:883936-883955 | Msa0142070:CDS | 40.0% | |
| AATGGCTAATGTTTGTGGAC+GGG | + | chr1_4:884059-884078 | None:intergenic | 40.0% | |
| GAGCAAATGGCTAATGTTTG+TGG | + | chr1_4:884064-884083 | None:intergenic | 40.0% | |
| TTTCGTGTACAGTCAGTCTA+AGG | - | chr1_4:884099-884118 | Msa0142070:CDS | 40.0% | |
| TTCGTGTACAGTCAGTCTAA+GGG | - | chr1_4:884100-884119 | Msa0142070:CDS | 40.0% | |
| AGAGAGCTGTTAAGCCAATC+GGG | + | chr1_4:878461-878480 | None:intergenic | 45.0% | |
| GAGAGAGCTGTTAAGCCAAT+CGG | + | chr1_4:878462-878481 | None:intergenic | 45.0% | |
| ! | ATTGGCTTAACAGCTCTCTC+TGG | - | chr1_4:878462-878481 | Msa0142070:exon | 45.0% |
| GGAGGATCTTGAACTACGAT+GGG | + | chr1_4:878602-878621 | None:intergenic | 45.0% | |
| TCAATTATCTGCTTAGGCGG+AGG | + | chr1_4:878620-878639 | None:intergenic | 45.0% | |
| TCAGTTGTCGAAGAAGGTGA+TGG | - | chr1_4:878815-878834 | Msa0142070:intron | 45.0% | |
| !! | CGAAGAAGGTGATGGATATG+CGG | - | chr1_4:878823-878842 | Msa0142070:intron | 45.0% |
| !! | GAAGAAGGTGATGGATATGC+GGG | - | chr1_4:878824-878843 | Msa0142070:intron | 45.0% |
| ! | TGATGGATATGCGGGAATTG+AGG | - | chr1_4:878832-878851 | Msa0142070:intron | 45.0% |
| TTGAGGAGGATCTCATGTCA+AGG | - | chr1_4:878849-878868 | Msa0142070:intron | 45.0% | |
| CTGGGATACGTTCTACATTG+TGG | - | chr1_4:878886-878905 | Msa0142070:intron | 45.0% | |
| ATCTCAGATTATGGGGTGGA+GGG | - | chr1_4:879285-879304 | Msa0142070:intron | 45.0% | |
| GCTAGTCAGAAATCACAAGG+AGG | - | chr1_4:879621-879640 | Msa0142070:intron | 45.0% | |
| CTCAAAGGATGCTCATCATG+AGG | + | chr1_4:879722-879741 | None:intergenic | 45.0% | |
| GATGAGCATCCTTTGAGTCT+TGG | - | chr1_4:879725-879744 | Msa0142070:intron | 45.0% | |
| AACGGAGGGAGTAGTACATT+AGG | + | chr1_4:879986-880005 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_4:880242-880261 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_4:880242-880261 | Msa0142070:intron | 45.0% |
| ! | ACGGAGGGAGTATAATGCTT+TGG | - | chr1_4:880258-880277 | Msa0142070:intron | 45.0% |
| CGATCCTCATTGCATTCTGT+AGG | - | chr1_4:880306-880325 | Msa0142070:intron | 45.0% | |
| GATGAGTGCGCTTTACATCT+CGG | + | chr1_4:880357-880376 | None:intergenic | 45.0% | |
| CCTTGGACATACTTTACTCC+TGG | + | chr1_4:880572-880591 | None:intergenic | 45.0% | |
| CCAGGAGTAAAGTATGTCCA+AGG | - | chr1_4:880569-880588 | Msa0142070:intron | 45.0% | |
| ! | CTCACTGCATTTTCTTCGTC+TGG | + | chr1_4:880641-880660 | None:intergenic | 45.0% |
| TAAAGGGGAAGCCATAATGG+GGG | - | chr1_4:881070-881089 | Msa0142070:intron | 45.0% | |
| TGTCATCTCTACCCCCATTA+TGG | + | chr1_4:881084-881103 | None:intergenic | 45.0% | |
| CACCCTTTCCCATAACTTCA+TGG | + | chr1_4:881219-881238 | None:intergenic | 45.0% | |
| TCCCAGGCACAAAACCAAAT+TGG | + | chr1_4:881287-881306 | None:intergenic | 45.0% | |
| !!! | AATTTGGTTTTGTGCCTGGG+AGG | - | chr1_4:881286-881305 | Msa0142070:intron | 45.0% |
| CTACTTACTTTGACGCGTGA+TGG | - | chr1_4:881326-881345 | Msa0142070:intron | 45.0% | |
| ! | AGAGATTTTGTGGAAAGCCC+TGG | - | chr1_4:881418-881437 | Msa0142070:intron | 45.0% |
| AGCTATCCAGGATAGGTATG+AGG | - | chr1_4:881472-881491 | Msa0142070:intron | 45.0% | |
| GCTATCCAGGATAGGTATGA+GGG | - | chr1_4:881473-881492 | Msa0142070:intron | 45.0% | |
| ! | GCAGATGATGTAGTCTTGCT+TGG | - | chr1_4:881656-881675 | Msa0142070:intron | 45.0% |
| AGTCGAGGGAGGAGTTAAAT+GGG | - | chr1_4:881681-881700 | Msa0142070:intron | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | - | chr1_4:881806-881825 | Msa0142070:intron | 45.0% | |
| GTGTAACTTGGGGGATGATA+TGG | + | chr1_4:881835-881854 | None:intergenic | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | chr1_4:881933-881952 | Msa0142070:CDS | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | chr1_4:881952-881971 | None:intergenic | 45.0% | |
| TCAGACAACAACAGTCAGAC+CGG | - | chr1_4:882004-882023 | Msa0142070:CDS | 45.0% | |
| ! | AAGTAAGTGTAGCGGAGATG+AGG | - | chr1_4:882064-882083 | Msa0142070:intron | 45.0% |
| !! | AGGATGTTGTGATGGATGAG+TGG | - | chr1_4:882084-882103 | Msa0142070:intron | 45.0% |
| GATGAGTGGTAAGACTAGAC+AGG | - | chr1_4:882098-882117 | Msa0142070:intron | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | - | chr1_4:882103-882122 | Msa0142070:intron | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | - | chr1_4:882134-882153 | Msa0142070:intron | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | - | chr1_4:882135-882154 | Msa0142070:intron | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | - | chr1_4:882136-882155 | Msa0142070:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | + | chr1_4:882227-882246 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | chr1_4:882250-882269 | Msa0142070:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr1_4:882260-882279 | Msa0142070:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_4:882406-882425 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_4:882407-882426 | None:intergenic | 45.0% |
| TGTGATGTATGATCACGGGA+AGG | - | chr1_4:882497-882516 | Msa0142070:intron | 45.0% | |
| GTGATGTATGATCACGGGAA+GGG | - | chr1_4:882498-882517 | Msa0142070:intron | 45.0% | |
| ! | CCTCCCTGTTGCTTAATTGA+TGG | + | chr1_4:883213-883232 | None:intergenic | 45.0% |
| CCATCAATTAAGCAACAGGG+AGG | - | chr1_4:883210-883229 | Msa0142070:intron | 45.0% | |
| TCAATTAAGCAACAGGGAGG+GGG | - | chr1_4:883213-883232 | Msa0142070:intron | 45.0% | |
| !! | GATCACTCTCCTATTGACTC+AGG | - | chr1_4:883382-883401 | Msa0142070:CDS | 45.0% |
| !! | ACTCTTTTAGGTGACCCAGA+GGG | - | chr1_4:883440-883459 | Msa0142070:intron | 45.0% |
| TCGGAACAAGATTGTACCTG+TGG | + | chr1_4:883467-883486 | None:intergenic | 45.0% | |
| ! | ACAATCGGGATCCTCTAAAG+TGG | + | chr1_4:883663-883682 | None:intergenic | 45.0% |
| ATAGAACTGGTGAGTGGTGA+TGG | - | chr1_4:883844-883863 | Msa0142070:intron | 45.0% | |
| TTAGCATTGCACAACACACC+CGG | + | chr1_4:883972-883991 | None:intergenic | 45.0% | |
| TTGAAGTGAAATCACCCGCT+AGG | + | chr1_4:884014-884033 | None:intergenic | 45.0% | |
| !! | ATATAATTAATTAAATGTAA+AGG | + | chr1_4:880824-880843 | None:intergenic | 5.0% |
| AGGTGAAATTGGGCTGTGGA+CGG | + | chr1_4:878561-878580 | None:intergenic | 50.0% | |
| GAGGTTGGGGAGGTGAAATT+GGG | + | chr1_4:878571-878590 | None:intergenic | 50.0% | |
| TGAACTACGATGGGAGGAGA+CGG | + | chr1_4:878593-878612 | None:intergenic | 50.0% | |
| GGATCTTGAACTACGATGGG+AGG | + | chr1_4:878599-878618 | None:intergenic | 50.0% | |
| CGGAGGATCTTGAACTACGA+TGG | + | chr1_4:878603-878622 | None:intergenic | 50.0% | |
| ATCGTGGTCATGGTGATCGT+CGG | + | chr1_4:878654-878673 | None:intergenic | 50.0% | |
| ATGGTGAGAGACGTCGTAAG+CGG | + | chr1_4:878687-878706 | None:intergenic | 50.0% | |
| TGGATATGCGGGAATTGAGG+AGG | - | chr1_4:878835-878854 | Msa0142070:intron | 50.0% | |
| AAGGTGTGCCTGATTCTGCT+GGG | - | chr1_4:878868-878887 | Msa0142070:intron | 50.0% | |
| GAACGTATCCCAGCAGAATC+AGG | + | chr1_4:878879-878898 | None:intergenic | 50.0% | |
| CATCTCAGATTATGGGGTGG+AGG | - | chr1_4:879284-879303 | Msa0142070:intron | 50.0% | |
| TCTCAGATTATGGGGTGGAG+GGG | - | chr1_4:879286-879305 | Msa0142070:intron | 50.0% | |
| ! | CTGGTCTTCCCAAGACTCAA+AGG | + | chr1_4:879737-879756 | None:intergenic | 50.0% |
| GTCTTGGGAAGACCAGTGTA+TGG | - | chr1_4:879741-879760 | Msa0142070:intron | 50.0% | |
| ! | CAGGTGGACTTAGCAAAGCA+TGG | + | chr1_4:880795-880814 | None:intergenic | 50.0% |
| ! | TTTTGTGGAAAGCCCTGGAG+AGG | - | chr1_4:881423-881442 | Msa0142070:intron | 50.0% |
| GAAAGCCCTGGAGAGGAAAA+GGG | - | chr1_4:881430-881449 | Msa0142070:intron | 50.0% | |
| AAGCTCCCTCATACCTATCC+TGG | + | chr1_4:881481-881500 | None:intergenic | 50.0% | |
| ACTAGTGTGAGGACGCAAGA+TGG | - | chr1_4:881503-881522 | Msa0142070:intron | 50.0% | |
| CTAGTGTGAGGACGCAAGAT+GGG | - | chr1_4:881504-881523 | Msa0142070:intron | 50.0% | |
| TAGTGTGAGGACGCAAGATG+GGG | - | chr1_4:881505-881524 | Msa0142070:intron | 50.0% | |
| AAGGACTTAGGGTTGACCCT+TGG | + | chr1_4:881565-881584 | None:intergenic | 50.0% | |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | - | chr1_4:881666-881685 | Msa0142070:intron | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | - | chr1_4:881667-881686 | Msa0142070:intron | 50.0% |
| GAGTCGAGGGAGGAGTTAAA+TGG | - | chr1_4:881680-881699 | Msa0142070:intron | 50.0% | |
| TAAATGGGAGGCTAGAGACC+TGG | - | chr1_4:881696-881715 | Msa0142070:intron | 50.0% | |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | - | chr1_4:881719-881738 | Msa0142070:intron | 50.0% |
| GCAGAAGCCATACGCTTCTA+AGG | + | chr1_4:881729-881748 | None:intergenic | 50.0% | |
| CTGCCTGAGTAGAAGCAAGA+CGG | - | chr1_4:881745-881764 | Msa0142070:intron | 50.0% | |
| ACTCCGTCTTGCTTCTACTC+AGG | + | chr1_4:881751-881770 | None:intergenic | 50.0% | |
| AAGGAGAAGTGGGTCTACCT+TGG | - | chr1_4:881793-881812 | Msa0142070:intron | 50.0% | |
| GTCTCCAACTTTCACCTCCA+AGG | + | chr1_4:881813-881832 | None:intergenic | 50.0% | |
| ACAACAACAGTCAGACCGGA+CGG | - | chr1_4:882008-882027 | Msa0142070:CDS | 50.0% | |
| CGGAGATGAGGATGTTGTGA+TGG | - | chr1_4:882076-882095 | Msa0142070:intron | 50.0% | |
| CTACCCCACTCTCTCTCTAA+TGG | + | chr1_4:882142-882161 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_4:882402-882421 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1_4:882408-882427 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1_4:882405-882424 | Msa0142070:intron | 50.0% | |
| GAACGCATCAGCTTCAGCAA+AGG | + | chr1_4:882641-882660 | None:intergenic | 50.0% | |
| !! | CACTCTTTTAGGTGACCCAG+AGG | - | chr1_4:883439-883458 | Msa0142070:intron | 50.0% |
| ATTGTACCTGTGGACCCTCT+GGG | + | chr1_4:883457-883476 | None:intergenic | 50.0% | |
| !! | GGTGAGTGGTGATGGTAGAT+CGG | - | chr1_4:883852-883871 | Msa0142070:intron | 50.0% |
| !! | GTGAGTGGTGATGGTAGATC+GGG | - | chr1_4:883853-883872 | Msa0142070:intron | 50.0% |
| TTCTGCAGGAGACTCTTCTC+CGG | - | chr1_4:883950-883969 | Msa0142070:CDS | 50.0% | |
| AAGTGAAATCACCCGCTAGG+AGG | + | chr1_4:884011-884030 | None:intergenic | 50.0% | |
| ! | AGAGGATTCTTCGGTGGTGG+TGG | + | chr1_4:878537-878556 | None:intergenic | 55.0% |
| GTGGACGGGAGAGGATTCTT+CGG | + | chr1_4:878546-878565 | None:intergenic | 55.0% | |
| GGTGAAATTGGGCTGTGGAC+GGG | + | chr1_4:878560-878579 | None:intergenic | 55.0% | |
| GGAGGTTGGGGAGGTGAAAT+TGG | + | chr1_4:878572-878591 | None:intergenic | 55.0% | |
| ! | AAGGAGGCACATCGTGGTCA+TGG | + | chr1_4:878664-878683 | None:intergenic | 55.0% |
| TGAGAGACGTCGTAAGCGGA+AGG | + | chr1_4:878683-878702 | None:intergenic | 55.0% | |
| CAAGGTGTGCCTGATTCTGC+TGG | - | chr1_4:878867-878886 | Msa0142070:intron | 55.0% | |
| ! | GATGACCAAAGCGCTCGATC+CGG | + | chr1_4:879164-879183 | None:intergenic | 55.0% |
| ATGATGCCGCCAAACGTGAC+AGG | - | chr1_4:879672-879691 | Msa0142070:intron | 55.0% | |
| TGATGCCGCCAAACGTGACA+GGG | - | chr1_4:879673-879692 | Msa0142070:intron | 55.0% | |
| ! | TTTGACGCGTGATGGAGCGA+CGG | - | chr1_4:881334-881353 | Msa0142070:intron | 55.0% |
| GGAAAGCCCTGGAGAGGAAA+AGG | - | chr1_4:881429-881448 | Msa0142070:intron | 55.0% | |
| ! | CCTCACCCTTTTCCTCTCCA+GGG | + | chr1_4:881438-881457 | None:intergenic | 55.0% |
| ! | TCCTCACCCTTTTCCTCTCC+AGG | + | chr1_4:881439-881458 | None:intergenic | 55.0% |
| AGGGAGCTTCGACTAGTGTG+AGG | - | chr1_4:881492-881511 | Msa0142070:intron | 55.0% | |
| CGAGGGAGGAGTTAAATGGG+AGG | - | chr1_4:881684-881703 | Msa0142070:intron | 55.0% | |
| GAGAAGTGGGTCTACCTTGG+AGG | - | chr1_4:881796-881815 | Msa0142070:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_4:882394-882413 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_4:882393-882412 | Msa0142070:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_4:882394-882413 | Msa0142070:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_4:882400-882419 | Msa0142070:intron | 55.0% | |
| GATTGTACCTGTGGACCCTC+TGG | + | chr1_4:883458-883477 | None:intergenic | 55.0% | |
| TCTGCAGGAGACTCTTCTCC+GGG | - | chr1_4:883951-883970 | Msa0142070:CDS | 55.0% | |
| !! | TTCTTCGGTGGTGGTGGTGG+TGG | + | chr1_4:878531-878550 | None:intergenic | 60.0% |
| !! | GGATTCTTCGGTGGTGGTGG+TGG | + | chr1_4:878534-878553 | None:intergenic | 60.0% |
| GGGAGAGGATTCTTCGGTGG+TGG | + | chr1_4:878540-878559 | None:intergenic | 60.0% | |
| GACGGGAGAGGATTCTTCGG+TGG | + | chr1_4:878543-878562 | None:intergenic | 60.0% | |
| AATTGGGCTGTGGACGGGAG+AGG | + | chr1_4:878555-878574 | None:intergenic | 60.0% | |
| GGGGAGGTGAAATTGGGCTG+TGG | + | chr1_4:878565-878584 | None:intergenic | 60.0% | |
| ATGGGAGGAGACGGAGGTTG+GGG | + | chr1_4:878584-878603 | None:intergenic | 60.0% | |
| GATGGGAGGAGACGGAGGTT+GGG | + | chr1_4:878585-878604 | None:intergenic | 60.0% | |
| ACTACGATGGGAGGAGACGG+AGG | + | chr1_4:878590-878609 | None:intergenic | 60.0% | |
| ! | AAGCGGAAGGAGGCACATCG+TGG | + | chr1_4:878670-878689 | None:intergenic | 60.0% |
| GAGACGTCGTAAGCGGAAGG+AGG | + | chr1_4:878680-878699 | None:intergenic | 60.0% | |
| TTCCACCGGATCGAGCGCTT+TGG | - | chr1_4:879156-879175 | Msa0142070:CDS | 60.0% | |
| CAAGGCCCTGTCACGTTTGG+CGG | + | chr1_4:879681-879700 | None:intergenic | 60.0% | |
| GAGCAAGGCCCTGTCACGTT+TGG | + | chr1_4:879684-879703 | None:intergenic | 60.0% | |
| TGTGCCTGGGAGGTCGACTA+TGG | - | chr1_4:881296-881315 | Msa0142070:intron | 60.0% | |
| GCTTCCATAGTCGACCTCCC+AGG | + | chr1_4:881303-881322 | None:intergenic | 60.0% | |
| CCCTGGAGAGGAAAAGGGTG+AGG | - | chr1_4:881435-881454 | Msa0142070:intron | 60.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | - | chr1_4:881670-881689 | Msa0142070:intron | 60.0% |
| ATGGGAGGCTAGAGACCTGG+AGG | - | chr1_4:881699-881718 | Msa0142070:intron | 60.0% | |
| !! | CGCTTCTAAGGCTTGCCTCC+AGG | + | chr1_4:881717-881736 | None:intergenic | 60.0% |
| AGTCAGACCGGACGGAGTGT+TGG | - | chr1_4:882016-882035 | Msa0142070:CDS | 60.0% | |
| ! | GTCAGACCGGACGGAGTGTT+GGG | - | chr1_4:882017-882036 | Msa0142070:CDS | 60.0% |
| TAACCGCCCAACACTCCGTC+CGG | + | chr1_4:882026-882045 | None:intergenic | 60.0% | |
| CATTCGCAAGCGCCTCCTAG+CGG | - | chr1_4:883996-884015 | Msa0142070:CDS | 60.0% | |
| ATTCGCAAGCGCCTCCTAGC+GGG | - | chr1_4:883997-884016 | Msa0142070:CDS | 60.0% | |
| GCGGGGGAGTGAGGAACAGT+GGG | + | chr1_4:878494-878513 | None:intergenic | 65.0% | |
| !! | TTCGGTGGTGGTGGTGGTGG+TGG | + | chr1_4:878528-878547 | None:intergenic | 65.0% |
| CGATGGGAGGAGACGGAGGT+TGG | + | chr1_4:878586-878605 | None:intergenic | 65.0% | |
| ! | GACCAAAGCGCTCGATCCGG+TGG | + | chr1_4:879161-879180 | None:intergenic | 65.0% |
| !! | AGACCGGACGGAGTGTTGGG+CGG | - | chr1_4:882020-882039 | Msa0142070:CDS | 65.0% |
| AGGTGACCCAGAGGGTCCAC+AGG | - | chr1_4:883448-883467 | Msa0142070:intron | 65.0% | |
| GGCGGGGGAGTGAGGAACAG+TGG | + | chr1_4:878495-878514 | None:intergenic | 70.0% | |
| TGTTCCTCACTCCCCCGCCG+CGG | - | chr1_4:878496-878515 | Msa0142070:CDS | 70.0% | |
| !! | GGTGGTGGTGGTGGTAGCCG+CGG | + | chr1_4:878516-878535 | None:intergenic | 70.0% |
| !! | GGTGGTGGTGGTGGTGGTGG+TGG | + | chr1_4:878522-878541 | None:intergenic | 70.0% |
| GGAGGAGACGGAGGTTGGGG+AGG | + | chr1_4:878581-878600 | None:intergenic | 70.0% | |
| !! | TGGTGGTGGTAGCCGCGGCG+GGG | + | chr1_4:878511-878530 | None:intergenic | 75.0% |
| !! | GTGGTGGTGGTAGCCGCGGC+GGG | + | chr1_4:878512-878531 | None:intergenic | 75.0% |
| !! | GGTGGTGGTGGTAGCCGCGG+CGG | + | chr1_4:878513-878532 | None:intergenic | 75.0% |
| ! | GTAGCCGCGGCGGGGGAGTG+AGG | + | chr1_4:878503-878522 | None:intergenic | 80.0% |
| !! | GGTGGTGGTAGCCGCGGCGG+GGG | + | chr1_4:878510-878529 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 878353 | 884232 | 878353 | ID=Msa0142070;Name=Msa0142070 |
| chr1_4 | mRNA | 878353 | 884232 | 878353 | ID=Msa0142070-mRNA-1;Parent=Msa0142070;Name=Msa0142070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=87|1|1|1|1|1|9|113|440 |
| chr1_4 | exon | 878353 | 878627 | 878353 | ID=Msa0142070-mRNA-1:exon:250;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 879116 | 879232 | 879116 | ID=Msa0142070-mRNA-1:exon:249;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 879769 | 879948 | 879769 | ID=Msa0142070-mRNA-1:exon:248;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 881930 | 882058 | 881930 | ID=Msa0142070-mRNA-1:exon:247;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 882159 | 882257 | 882159 | ID=Msa0142070-mRNA-1:exon:246;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 882807 | 882959 | 882807 | ID=Msa0142070-mRNA-1:exon:245;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 883341 | 883445 | 883341 | ID=Msa0142070-mRNA-1:exon:244;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 883674 | 883766 | 883674 | ID=Msa0142070-mRNA-1:exon:243;Parent=Msa0142070-mRNA-1 |
| chr1_4 | exon | 883861 | 884232 | 883861 | ID=Msa0142070-mRNA-1:exon:242;Parent=Msa0142070-mRNA-1 |
| chr1_4 | five_prime_UTR | 884146 | 884232 | 884146 | ID=Msa0142070-mRNA-1:five_prime_utr;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 883861 | 884145 | 883861 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 883674 | 883766 | 883674 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 883341 | 883445 | 883341 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 882807 | 882959 | 882807 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 882159 | 882257 | 882159 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 881930 | 882058 | 881930 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 879769 | 879948 | 879769 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 879116 | 879232 | 879116 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | CDS | 878466 | 878627 | 878466 | ID=Msa0142070-mRNA-1:cds;Parent=Msa0142070-mRNA-1 |
| chr1_4 | three_prime_UTR | 878353 | 878465 | 878353 | ID=Msa0142070-mRNA-1:three_prime_utr;Parent=Msa0142070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
