AlfalfaGEDB | Msa0142360

M. sativa cultivar zhongmu-4 / Msa0142360

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112
PFAM: PF12165.11

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142360	sp\|Q40359\|ALFIN_MEDSA	99.611	257	1	0	1	257	1	257	0.0	536

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142360	A0A072UTR5	99.611	257	0	1	1	257	1	256	0.0	532

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0142360	TF	Alfin-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142360	Msa1267370	0.920692	9.272141e-88	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142360	MtrunA17_Chr4g0076771	99.611	257	0	1	1	257	1	256	0.0	532
Msa0142360	MtrunA17_Chr8g0343441	71.311	244	70	0	10	253	9	252	3.42e-111	320
Msa0142360	MtrunA17_Chr1g0150821	67.589	253	75	2	10	255	10	262	2.98e-105	305
Msa0142360	MtrunA17_Chr2g0300241	68.548	248	69	4	10	255	12	252	1.77e-104	303
Msa0142360	MtrunA17_Chr2g0329821	67.194	253	77	2	1	253	1	247	2.56e-103	300
Msa0142360	MtrunA17_Chr7g0242511	62.302	252	84	5	4	255	1	241	1.36e-93	275
Msa0142360	MtrunA17_Chr4g0006381	61.508	252	86	5	4	255	1	241	2.78e-90	267

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0142360	AT2G02470.1	79.151	259	46	5	1	255	1	255	3.52e-130	369
Msa0142360	AT1G14510.1	78.656	253	49	3	1	253	1	248	5.26e-128	363
Msa0142360	AT2G02470.2	76.744	258	45	5	1	255	1	246	4.40e-124	353
Msa0142360	AT5G20510.1	67.568	259	80	3	1	255	1	259	8.81e-112	322
Msa0142360	AT3G42790.1	66.275	255	80	3	1	255	1	249	1.06e-108	314
Msa0142360	AT5G05610.2	63.347	251	79	5	5	255	3	240	1.73e-95	280
Msa0142360	AT5G05610.1	63.347	251	79	5	5	255	3	240	1.73e-95	280
Msa0142360	AT5G26210.1	67.331	251	72	3	10	255	9	254	5.23e-93	275
Msa0142360	AT3G11200.1	63.137	255	84	4	1	255	1	245	7.65e-89	263
Msa0142360	AT5G20510.2	66.512	215	68	3	45	255	4	218	5.70e-86	255

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 115 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTTCAACAGTTCG+AGG	0.455840	1_4:+1259189	None:intergenic
AAAGAAAAGCGAAAATCTAG+TGG	0.565767	1_4:-1259270	Msa0142360:five_prime_UTR
AAATTACACTTATGTCCGAA+TGG	0.623775	1_4:+1255100	None:intergenic
AAATTGAAATTGAGGATGGA+AGG	0.531943	1_4:-1259231	Msa0142360:exon
AACAGCCTCGAGGAAATTTG+AGG	0.509623	1_4:-1255335	Msa0142360:intron
AAGAAAAGCGAAAATCTAGT+GGG	0.627706	1_4:-1259269	Msa0142360:five_prime_UTR
AAGGAGAATTTGTGCCTCTA+TGG	0.272744	1_4:-1258285	Msa0142360:CDS
AATAGCAAATACAAATCAAG+TGG	0.591787	1_4:-1256216	Msa0142360:CDS
AATCCTGAAATTATCACTCT+AGG	0.460307	1_4:+1254987	None:intergenic
AATCTTCAGATTGCATCTTG+CGG	0.576300	1_4:-1255050	Msa0142360:three_prime_UTR

Showing 1 to 10 of 115 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAGCGAAAATCTAG+TGG	-	chr1_4:1254972-1254991	Msa0142360:three_prime_UTR	30.0%
AAGAAAAGCGAAAATCTAGT+GGG	-	chr1_4:1254973-1254992	Msa0142360:three_prime_UTR	30.0%
GTTGAAATTGAAATTGAGGA+TGG	-	chr1_4:1255007-1255026	Msa0142360:three_prime_UTR	30.0%
AAATTGAAATTGAGGATGGA+AGG	-	chr1_4:1255011-1255030	Msa0142360:three_prime_UTR	30.0%
AAGAAAAAAAGGAAAACCCT+AGG	+	chr1_4:1255324-1255343	None:intergenic	30.0%
ATGCTTAAAAAATGTGGCAT+GGG	+	chr1_4:1255482-1255501	None:intergenic	30.0%
CCAACTTCAAAAGATAACAA+AGG	+	chr1_4:1255715-1255734	None:intergenic	30.0%
ATCCATAACTTTCTCAACAA+GGG	+	chr1_4:1256482-1256501	None:intergenic	30.0%
AATCCATAACTTTCTCAACA+AGG	+	chr1_4:1256483-1256502	None:intergenic	30.0%
CTTATTCTTTCTCATGACTA+TGG	-	chr1_4:1256555-1256574	Msa0142360:intron	30.0%

Showing 1 to 10 of 363 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	1254947	1259317	1254947	ID=Msa0142360;Name=Msa0142360
chr1_4	mRNA	1254947	1259317	1254947	ID=Msa0142360-mRNA-1;Parent=Msa0142360;Name=Msa0142360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=79\|1\|1\|1\|0.66\|0.57\|7\|576\|257
chr1_4	exon	1254947	1255352	1254947	ID=Msa0142360-mRNA-1:exon:425;Parent=Msa0142360-mRNA-1
chr1_4	exon	1255452	1255567	1255452	ID=Msa0142360-mRNA-1:exon:424;Parent=Msa0142360-mRNA-1
chr1_4	exon	1255778	1256110	1255778	ID=Msa0142360-mRNA-1:exon:423;Parent=Msa0142360-mRNA-1
chr1_4	exon	1256212	1256344	1256212	ID=Msa0142360-mRNA-1:exon:422;Parent=Msa0142360-mRNA-1
chr1_4	exon	1258081	1258309	1258081	ID=Msa0142360-mRNA-1:exon:421;Parent=Msa0142360-mRNA-1
chr1_4	exon	1259014	1259046	1259014	ID=Msa0142360-mRNA-1:exon:420;Parent=Msa0142360-mRNA-1
chr1_4	exon	1259139	1259317	1259139	ID=Msa0142360-mRNA-1:exon:419;Parent=Msa0142360-mRNA-1
chr1_4	five_prime_UTR	1259239	1259317	1259239	ID=Msa0142360-mRNA-1:five_prime_utr;Parent=Msa0142360-mRNA-1
chr1_4	CDS	1259139	1259238	1259139	ID=Msa0142360-mRNA-1:cds;Parent=Msa0142360-mRNA-1
chr1_4	CDS	1259014	1259046	1259014	ID=Msa0142360-mRNA-1:cds;Parent=Msa0142360-mRNA-1
chr1_4	CDS	1258081	1258309	1258081	ID=Msa0142360-mRNA-1:cds;Parent=Msa0142360-mRNA-1
chr1_4	CDS	1256212	1256344	1256212	ID=Msa0142360-mRNA-1:cds;Parent=Msa0142360-mRNA-1
chr1_4	CDS	1255832	1256110	1255832	ID=Msa0142360-mRNA-1:cds;Parent=Msa0142360-mRNA-1
chr1_4	three_prime_UTR	1255778	1255831	1255778	ID=Msa0142360-mRNA-1:three_prime_utr;Parent=Msa0142360-mRNA-1
chr1_4	three_prime_UTR	1255452	1255567	1255452	ID=Msa0142360-mRNA-1:three_prime_utr;Parent=Msa0142360-mRNA-1
chr1_4	three_prime_UTR	1254947	1255352	1254947	ID=Msa0142360-mRNA-1:three_prime_utr;Parent=Msa0142360-mRNA-1

Gene Sequence

>Msa0142360

ATGGAAGGAATGGCACAGCACCCAGTACCTCGAACTGTTGAAGAAGTTTTTAGCGATTACAAAGGCAGACGCGCCGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGAAAAGGAGAATTTGTGCCTCTATGGGTTTCCAAATGAAACATGGGAAGTGAACTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATAAACTTTGCTCGGGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGATAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCCACAGTCTTTGAGCTTGCAACAGGAACTGCTAAGCAATCAAAGGACCAACTGACTGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCCCGCCAGTCTGAATCCCAGACCAAGGGTGTGAAGATGTCTGCACCGGTCAAAGAAGAGGTTGACAGTGGAGAAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACCGATGAATTCTGGATCTGTTGTGATATGTGCGAGAAATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCTGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG

Protein sequence

>Msa0142360

MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG*