AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267370 MtrunA17_Chr4g0076771 99.611 257 0 1 1 257 1 256 0.0 532
Msa1267370 MtrunA17_Chr8g0343441 71.311 244 70 0 10 253 9 252 3.42e-111 320
Msa1267370 MtrunA17_Chr1g0150821 67.589 253 75 2 10 255 10 262 2.98e-105 305
Msa1267370 MtrunA17_Chr2g0300241 68.548 248 69 4 10 255 12 252 1.77e-104 303
Msa1267370 MtrunA17_Chr2g0329821 67.194 253 77 2 1 253 1 247 2.56e-103 300
Msa1267370 MtrunA17_Chr7g0242511 62.302 252 84 5 4 255 1 241 1.36e-93 275
Msa1267370 MtrunA17_Chr4g0006381 61.508 252 86 5 4 255 1 241 2.78e-90 267
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267370 AT2G02470.1 79.151 259 46 5 1 255 1 255 3.52e-130 369
Msa1267370 AT1G14510.1 78.656 253 49 3 1 253 1 248 5.26e-128 363
Msa1267370 AT2G02470.2 76.744 258 45 5 1 255 1 246 4.40e-124 353
Msa1267370 AT5G20510.1 67.568 259 80 3 1 255 1 259 8.81e-112 322
Msa1267370 AT3G42790.1 66.275 255 80 3 1 255 1 249 1.06e-108 314
Msa1267370 AT5G05610.2 63.347 251 79 5 5 255 3 240 1.73e-95 280
Msa1267370 AT5G05610.1 63.347 251 79 5 5 255 3 240 1.73e-95 280
Msa1267370 AT5G26210.1 67.331 251 72 3 10 255 9 254 5.23e-93 275
Msa1267370 AT3G11200.1 63.137 255 84 4 1 255 1 245 7.65e-89 263
Msa1267370 AT5G20510.2 66.512 215 68 3 45 255 4 218 5.70e-86 255
Msa1267370 AT2G02470.3 82.927 164 24 3 1 164 1 160 2.71e-85 255
Msa1267370 AT5G20510.3 73.171 164 42 2 1 162 1 164 2.97e-75 227
Msa1267370 AT3G11200.2 62.844 218 71 4 38 255 25 232 6.78e-75 228

Find 115 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGCTGTTGCTTTCTATTT+TGG 0.091188 8_2:+72557524 Msa1267370:CDS
AATTGTAAAGCAGACTTATT+TGG 0.176098 8_2:+72560098 Msa1267370:three_prime_UTR
AATAAGTCTGCTTTACAATT+TGG 0.176499 8_2:-72560095 None:intergenic
TTTCCTAGAGTGATAATTTC+AGG 0.245410 8_2:+72560650 Msa1267370:three_prime_UTR
CATAAGTGTAATTTCTCTTT+GGG 0.258189 8_2:+72560549 Msa1267370:three_prime_UTR
AAGGAGAATTTGTGCCTCTA+TGG 0.272744 8_2:+72557350 Msa1267370:CDS
GTTCAGAGCTATCCAATTCT+TGG 0.273239 8_2:-72559811 None:intergenic
ATTATGGCACCGATGAATTC+TGG 0.291624 8_2:+72559677 Msa1267370:CDS
GCAGAACACAATTTGAATAT+TGG 0.295566 8_2:+72560498 Msa1267370:three_prime_UTR
ACATAAGTGTAATTTCTCTT+TGG 0.297461 8_2:+72560548 Msa1267370:three_prime_UTR
TTCACTTCCCATGTTTCATT+TGG 0.302703 8_2:-72557377 None:intergenic
TTTGGTGCCCGCTTTGGATT+TGG 0.319624 8_2:+72557542 Msa1267370:CDS
ATCTTCAGATTGCATCTTGC+GGG 0.342224 8_2:+72560591 Msa1267370:three_prime_UTR
TTGGATTTGGTAAGAATGAT+AGG 0.350809 8_2:+72557555 Msa1267370:CDS
AATCTAAGCATTCAAACAAT+TGG 0.359158 8_2:-72560342 None:intergenic
TCTTCAACAGTTCGAGGTAC+TGG 0.366061 8_2:-72556433 None:intergenic
TTGTTACAGAAAATTGTCTT+AGG 0.374048 8_2:+72560687 Msa1267370:three_prime_UTR
AGTCCCTTTGAGGACAATCT+TGG 0.377581 8_2:-72560128 None:intergenic
ATTGGATAGCTCTGAACGTT+TGG 0.378486 8_2:+72559817 Msa1267370:exon
ACATCTTCACACCCTTGGTC+TGG 0.386000 8_2:-72559564 None:intergenic
CCTTTCATCGTTGTAATGCT+TGG 0.387593 8_2:+72560459 Msa1267370:three_prime_UTR
TTGGTGTACAGTTCTGATCT+TGG 0.399828 8_2:+72560517 Msa1267370:three_prime_UTR
TCAGGAGGCACTTCCTCAAC+AGG 0.419078 8_2:-72557404 None:intergenic
CAGTTCTGATCTTGGCCATT+CGG 0.419315 8_2:+72560525 Msa1267370:three_prime_UTR
ACAGTCTTTGAGCTTGCAAC+AGG 0.426181 8_2:+72559347 Msa1267370:CDS
GGTGCTTGTGGTGATAATTA+TGG 0.428882 8_2:+72559661 Msa1267370:CDS
CATTGGGTATAAACTTTGCT+CGG 0.446703 8_2:+72557441 Msa1267370:CDS
AGTATCAAGAAGCCAAGAAT+TGG 0.452358 8_2:+72559799 Msa1267370:CDS
AAAACTTCTTCAACAGTTCG+AGG 0.455840 8_2:-72556439 None:intergenic
AATGCTGGCTCGGGAAGTTC+AGG 0.456279 8_2:-72557422 None:intergenic
CATCGTTGTAATGCTTGGTC+TGG 0.459488 8_2:+72560464 Msa1267370:three_prime_UTR
AATCCTGAAATTATCACTCT+AGG 0.460307 8_2:-72560653 None:intergenic
CTGTCAACCTCTTCTTTGAC+CGG 0.460633 8_2:-72559592 None:intergenic
GGCTTCTTGATACTGCAGCC+AGG 0.465655 8_2:-72559790 None:intergenic
TGAACTTCCCGAGCCAGCAT+TGG 0.471886 8_2:+72557424 Msa1267370:CDS
GTTTATACCCAATGCTGGCT+CGG 0.475497 8_2:-72557432 None:intergenic
TTGAGTTGAAATTGAAATTG+AGG 0.475926 8_2:+72556389 Msa1267370:five_prime_UTR
GCAGCATCCAAGTCCCTTTG+AGG 0.478714 8_2:-72560138 None:intergenic
CTTTGCTCGGGATGGAATGC+AGG 0.478727 8_2:+72557454 Msa1267370:CDS
GGTTGACAGTGGAGAAGAAG+AGG 0.483798 8_2:+72559606 Msa1267370:CDS
AGATTGTCCTCAAAGGGACT+TGG 0.486100 8_2:+72560131 Msa1267370:three_prime_UTR
TGCAGACATCTTCACACCCT+TGG 0.486335 8_2:-72559569 None:intergenic
CATCTTCACACCCTTGGTCT+GGG 0.494259 8_2:-72559563 None:intergenic
AGGAGAATTTGTGCCTCTAT+GGG 0.495200 8_2:+72557351 Msa1267370:CDS
GAACTTCCCGAGCCAGCATT+GGG 0.495975 8_2:+72557425 Msa1267370:CDS
TTGATGTGTTCAGCCTTGGC+AGG 0.497341 8_2:-72559754 None:intergenic
CTTCAACAGTTCGAGGTACT+GGG 0.497593 8_2:-72556432 None:intergenic
TTGATCAAAGCTCTCACTAC+TGG 0.498155 8_2:+72556490 Msa1267370:CDS
CTGAACGTTTGGACCATTAG+CGG 0.498737 8_2:+72559828 Msa1267370:three_prime_UTR
CATTGAAGCTACTGTTGAGA+AGG 0.499459 8_2:+72560397 Msa1267370:three_prime_UTR
GGTATAAACTTTGCTCGGGA+TGG 0.501826 8_2:+72557446 Msa1267370:CDS
TTGCTTGATGTGTTCAGCCT+TGG 0.502589 8_2:-72559758 None:intergenic
TTTATACCCAATGCTGGCTC+GGG 0.504159 8_2:-72557431 None:intergenic
TGAACGTTTGGACCATTAGC+GGG 0.504547 8_2:+72559829 Msa1267370:three_prime_UTR
AACAGCCTCGAGGAAATTTG+AGG 0.509623 8_2:+72560300 Msa1267370:intron
GTTGAAATTGAAATTGAGGA+TGG 0.513389 8_2:+72556393 Msa1267370:exon
ATTGGGTATAAACTTTGCTC+GGG 0.520391 8_2:+72557442 Msa1267370:CDS
AGTGAGAGCTTTGATCAAAC+CGG 0.520678 8_2:-72556485 None:intergenic
TCTCCAAGATTGTCCTCAAA+GGG 0.522695 8_2:+72560125 Msa1267370:three_prime_UTR
CCAAGCATTACAACGATGAA+AGG 0.525873 8_2:-72560459 None:intergenic
CATTGTTGTGAGCAGTCAGT+TGG 0.529254 8_2:-72559391 None:intergenic
GCTTCTTGATACTGCAGCCA+GGG 0.530817 8_2:-72559789 None:intergenic
ACTAACCGGGATCGCAGAGC+TGG 0.531212 8_2:-72556625 None:intergenic
AAATTGAAATTGAGGATGGA+AGG 0.531943 8_2:+72556397 Msa1267370:exon
GTCTCCAAGATTGTCCTCAA+AGG 0.536958 8_2:+72560124 Msa1267370:three_prime_UTR
GAAATTGAGGATGGAAGGAA+TGG 0.537738 8_2:+72556402 Msa1267370:exon
CCTTGGTCTGGGATTCAGAC+TGG 0.538724 8_2:-72559552 None:intergenic
TTGCAGTTCACAGTGACTCA+TGG 0.543636 8_2:+72557498 Msa1267370:CDS
AGGAAATTTGAGGTGACTGA+AGG 0.545429 8_2:+72560310 Msa1267370:three_prime_UTR
CAAGCATTACAACGATGAAA+GGG 0.550279 8_2:-72560458 None:intergenic
GTTGTGATATGTGCGAGAAA+TGG 0.560529 8_2:+72559704 Msa1267370:CDS
TTTCATTTGGAAACCCATAG+AGG 0.561848 8_2:-72557364 None:intergenic
GCAAAGTTTATACCCAATGC+TGG 0.563847 8_2:-72557437 None:intergenic
GGAGAAGGACTGGTTATCAC+TGG 0.565404 8_2:+72557475 Msa1267370:CDS
AAAGAAAAGCGAAAATCTAG+TGG 0.565767 8_2:+72556358 Msa1267370:five_prime_UTR
TCGGGATGGAATGCAGGAGA+AGG 0.567649 8_2:+72557460 Msa1267370:CDS
ATGGGTTTCCAAATGAAACA+TGG 0.572525 8_2:+72557369 Msa1267370:CDS
ATTATCACCACAAGCACCAC+AGG 0.573675 8_2:-72559656 None:intergenic
AATCTTCAGATTGCATCTTG+CGG 0.576300 8_2:+72560590 Msa1267370:three_prime_UTR
ATCAAGCAATACAAGTGCCC+TGG 0.578416 8_2:+72559772 Msa1267370:CDS
ATTGAAGCTACTGTTGAGAA+GGG 0.578976 8_2:+72560398 Msa1267370:three_prime_UTR
ATAAGTGTAATTTCTCTTTG+GGG 0.579724 8_2:+72560550 Msa1267370:three_prime_UTR
GGTCTGGGATTCAGACTGGC+GGG 0.580455 8_2:-72559548 None:intergenic
TGTTAAAATTACTCCTGCCA+AGG 0.581201 8_2:+72559741 Msa1267370:CDS
ATGGAATGCAGGAGAAGGAC+TGG 0.581252 8_2:+72557465 Msa1267370:CDS
CAAATACAAATCAAGTGGAA+AGG 0.584281 8_2:+72559424 Msa1267370:CDS
TGTTGCAAGCTCAAAGACTG+TGG 0.590482 8_2:-72559345 None:intergenic
ATTCTTACCAAATCCAAAGC+GGG 0.591224 8_2:-72557549 None:intergenic
AATAGCAAATACAAATCAAG+TGG 0.591787 8_2:+72559419 Msa1267370:CDS
GTCTGCACCGGTCAAAGAAG+AGG 0.597402 8_2:+72559585 Msa1267370:CDS
TGGTCTGGGATTCAGACTGG+CGG 0.601563 8_2:-72559549 None:intergenic
GGGTGTGAAGATGTCTGCAC+CGG 0.601595 8_2:+72559573 Msa1267370:CDS
TGGGTTTCCAAATGAAACAT+GGG 0.604798 8_2:+72557370 Msa1267370:CDS
GATTACAAAGGCAGACGCGC+CGG 0.610248 8_2:+72556466 Msa1267370:CDS
GGTGCAACCTGTGGTGCTTG+TGG 0.611921 8_2:+72559649 Msa1267370:CDS
GTTGCAAGCTCAAAGACTGT+GGG 0.616342 8_2:-72559344 None:intergenic
GGAAGTGAACTTGCCTGTTG+AGG 0.623158 8_2:+72557391 Msa1267370:CDS
AAATTACACTTATGTCCGAA+TGG 0.623775 8_2:-72560540 None:intergenic
AGGAACTGCTAAGCAATCAA+AGG 0.625294 8_2:+72559367 Msa1267370:CDS
AAGAAAAGCGAAAATCTAGT+GGG 0.627706 8_2:+72556359 Msa1267370:five_prime_UTR
ATGTGCGAGAAATGGTTCCA+TGG 0.628526 8_2:+72559712 Msa1267370:CDS
ATCTCAAGATCATTTCTCCA+CGG 0.631669 8_2:-72560371 None:intergenic
AGGGACTTGGATGCTGCTCG+TGG 0.634998 8_2:+72560144 Msa1267370:three_prime_UTR
CAGTCTGAATCCCAGACCAA+GGG 0.635249 8_2:+72559553 Msa1267370:CDS
ACAACAGATCCAGAATTCAT+CGG 0.639218 8_2:-72559686 None:intergenic
ATGCTTAGATTAAGCTACCG+TGG 0.641025 8_2:+72560354 Msa1267370:three_prime_UTR
CCAGTCTGAATCCCAGACCA+AGG 0.643258 8_2:+72559552 Msa1267370:CDS
CAACTGACTGCTCACAACAA+TGG 0.646947 8_2:+72559392 Msa1267370:CDS
TTGTAATGCTTGGTCTGGTG+AGG 0.650483 8_2:+72560469 Msa1267370:three_prime_UTR
GCTGGCTCGGGAAGTTCAGG+AGG 0.654216 8_2:-72557419 None:intergenic
GTCAAAGAAGAGGTTGACAG+TGG 0.669063 8_2:+72559595 Msa1267370:CDS
GAAGAAGATGATGATGAACA+AGG 0.695245 8_2:+72559628 Msa1267370:CDS
AGTCACCTCAAATTTCCTCG+AGG 0.706846 8_2:-72560305 None:intergenic
GATGAACAAGGTGCAACCTG+TGG 0.715909 8_2:+72559640 Msa1267370:CDS
CATTCTTACCAAATCCAAAG+CGG 0.722080 8_2:-72557550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAAAAAAAGAAAAAA+AGG - chr8_2:72556726-72556745 None:intergenic 10.0%
!!! TTTAAACAATAACTTTTTAT+GGG - chr8_2:72557285-72557304 None:intergenic 10.0%
!! CATAAAATAAAAATATGAAA+TGG - chr8_2:72559461-72559480 None:intergenic 10.0%
!!! CTTTAAACAATAACTTTTTA+TGG - chr8_2:72557286-72557305 None:intergenic 15.0%
!! TAAGCAAAAAAGTAAAAAAA+TGG + chr8_2:72558100-72558119 Msa1267370:intron 15.0%
!!! TATTTCTTTTGCAAAATAAT+TGG + chr8_2:72559119-72559138 Msa1267370:intron 15.0%
!!! TTTCTGCATTTTTTTTAAAA+GGG + chr8_2:72560069-72560088 Msa1267370:intron 15.0%
!!! ATTCAAACATTTATTTTAAG+CGG + chr8_2:72560265-72560284 Msa1267370:intron 15.0%
!! TTTATCACAAAACAACAAAA+AGG + chr8_2:72558130-72558149 Msa1267370:intron 20.0%
!! AGAATAATGATTAGTGTAAT+TGG + chr8_2:72558498-72558517 Msa1267370:intron 20.0%
!!! TATAGCATTATTGGTTTTAT+AGG - chr8_2:72558562-72558581 None:intergenic 20.0%
!! ATAAAACCAATAATGCTATA+TGG + chr8_2:72558562-72558581 Msa1267370:intron 20.0%
!! TAAAACCAATAATGCTATAT+GGG + chr8_2:72558563-72558582 Msa1267370:intron 20.0%
!! TTTAGGGAAATTTAGTTATA+TGG + chr8_2:72558850-72558869 Msa1267370:intron 20.0%
!! TGTACGTGATATTAATATTT+AGG + chr8_2:72559253-72559272 Msa1267370:intron 20.0%
!!! TTAGGATTTTCATCTAATTT+TGG + chr8_2:72559271-72559290 Msa1267370:intron 20.0%
!!! TAATTTTAACACATTTACCA+TGG - chr8_2:72559732-72559751 None:intergenic 20.0%
!! TAAATATATTATGCAGTTTC+TGG + chr8_2:72560024-72560043 Msa1267370:intron 20.0%
!!! GTTTCTGCATTTTTTTTAAA+AGG + chr8_2:72560068-72560087 Msa1267370:intron 20.0%
!!! TTCTGCATTTTTTTTAAAAG+GGG + chr8_2:72560070-72560089 Msa1267370:intron 20.0%
!!! TTCAAACATTTATTTTAAGC+GGG + chr8_2:72560266-72560285 Msa1267370:intron 20.0%
!!! TTGAGTTGAAATTGAAATTG+AGG + chr8_2:72556389-72556408 Msa1267370:five_prime_UTR 25.0%
!!! AAAATTGTAGCATTTTAAGG+CGG - chr8_2:72556919-72556938 None:intergenic 25.0%
! AATAAGAGGACAAAACAAAA+TGG - chr8_2:72556992-72557011 None:intergenic 25.0%
!! AATGAAGGTATATTGGTAAT+AGG - chr8_2:72557033-72557052 None:intergenic 25.0%
!! TTTATGGGTTTTTCCTATTT+GGG - chr8_2:72557270-72557289 None:intergenic 25.0%
!! TTTTATGGGTTTTTCCTATT+TGG - chr8_2:72557271-72557290 None:intergenic 25.0%
! TGTAGACAAACATGAAAAAT+TGG + chr8_2:72557766-72557785 Msa1267370:intron 25.0%
! TTACAACACAAAAATCAACA+TGG + chr8_2:72557908-72557927 Msa1267370:intron 25.0%
! TACAACACAAAAATCAACAT+GGG + chr8_2:72557909-72557928 Msa1267370:intron 25.0%
! GGTTGAAAATGAAAAAACAA+GGG - chr8_2:72558156-72558175 None:intergenic 25.0%
! TGGTTGAAAATGAAAAAACA+AGG - chr8_2:72558157-72558176 None:intergenic 25.0%
!!! ATTATCATCTCTAAAACACT+CGG - chr8_2:72558627-72558646 None:intergenic 25.0%
! AGGGATAAAAGAAAAACTTT+AGG + chr8_2:72558819-72558838 Msa1267370:intron 25.0%
!!! AAAGATGACGGATTAAAATT+GGG - chr8_2:72558984-72559003 None:intergenic 25.0%
! AGTATATATCTCAAAGATGA+CGG - chr8_2:72558996-72559015 None:intergenic 25.0%
!! TTTTGCAAAATAATTGGCAT+AGG + chr8_2:72559125-72559144 Msa1267370:intron 25.0%
! TTTGCAAAATAATTGGCATA+GGG + chr8_2:72559126-72559145 Msa1267370:intron 25.0%
! TCAAAAAGCCATATTTCTTA+AGG + chr8_2:72559173-72559192 Msa1267370:intron 25.0%
!!! TCATCTAATTTTGGTTGAAA+TGG + chr8_2:72559280-72559299 Msa1267370:intron 25.0%
! AAATGGTTATTTACAGGAAA+AGG + chr8_2:72559297-72559316 Msa1267370:intron 25.0%
! AATAGCAAATACAAATCAAG+TGG + chr8_2:72559419-72559438 Msa1267370:CDS 25.0%
!!! TTGTGTTTTTAAGTAGTCAT+TGG + chr8_2:72559988-72560007 Msa1267370:intron 25.0%
! AATAAGTCTGCTTTACAATT+TGG - chr8_2:72560098-72560117 None:intergenic 25.0%
! AATTGTAAAGCAGACTTATT+TGG + chr8_2:72560098-72560117 Msa1267370:three_prime_UTR 25.0%
!!! TCAAACATTTATTTTAAGCG+GGG + chr8_2:72560267-72560286 Msa1267370:intron 25.0%
! AATCTAAGCATTCAAACAAT+TGG - chr8_2:72560345-72560364 None:intergenic 25.0%
! ACATAAGTGTAATTTCTCTT+TGG + chr8_2:72560548-72560567 Msa1267370:three_prime_UTR 25.0%
! CATAAGTGTAATTTCTCTTT+GGG + chr8_2:72560549-72560568 Msa1267370:three_prime_UTR 25.0%
! ATAAGTGTAATTTCTCTTTG+GGG + chr8_2:72560550-72560569 Msa1267370:three_prime_UTR 25.0%
!!! TCTGATTAGAAGTTTTAGTT+AGG + chr8_2:72560620-72560639 Msa1267370:three_prime_UTR 25.0%
!! CAATTTTCTGTAACAACTAA+GGG - chr8_2:72560683-72560702 None:intergenic 25.0%
!! ACAATTTTCTGTAACAACTA+AGG - chr8_2:72560684-72560703 None:intergenic 25.0%
! TTGTTACAGAAAATTGTCTT+AGG + chr8_2:72560687-72560706 Msa1267370:three_prime_UTR 25.0%
AAAGAAAAGCGAAAATCTAG+TGG + chr8_2:72556358-72556377 Msa1267370:five_prime_UTR 30.0%
AAGAAAAGCGAAAATCTAGT+GGG + chr8_2:72556359-72556378 Msa1267370:five_prime_UTR 30.0%
GTTGAAATTGAAATTGAGGA+TGG + chr8_2:72556393-72556412 Msa1267370:exon 30.0%
AAATTGAAATTGAGGATGGA+AGG + chr8_2:72556397-72556416 Msa1267370:exon 30.0%
!!! GAAGTTTTTAGCGATTACAA+AGG + chr8_2:72556454-72556473 Msa1267370:CDS 30.0%
! TAAGAGCATAGCAGAAAATA+AGG - chr8_2:72556690-72556709 None:intergenic 30.0%
AAGAAAAAAAGGAAAACCCT+AGG - chr8_2:72556715-72556734 None:intergenic 30.0%
! ATGTATACAAAGAGTGTGTA+TGG - chr8_2:72556791-72556810 None:intergenic 30.0%
ATGCTTAAAAAATGTGGCAT+GGG - chr8_2:72556874-72556893 None:intergenic 30.0%
! GCCTTAAAATGCTACAATTT+TGG + chr8_2:72556918-72556937 Msa1267370:intron 30.0%
! GCCAAAATTGTAGCATTTTA+AGG - chr8_2:72556922-72556941 None:intergenic 30.0%
! AGCACTGAATTGAAAATAAG+AGG - chr8_2:72557006-72557025 None:intergenic 30.0%
CCAACTTCAAAAGATAACAA+AGG - chr8_2:72557107-72557126 None:intergenic 30.0%
!!! CCTTTGTTATCTTTTGAAGT+TGG + chr8_2:72557104-72557123 Msa1267370:intron 30.0%
! ATGATTTGCAAACATGGATT+AGG - chr8_2:72557148-72557167 None:intergenic 30.0%
! CAAAAGATGATTTGCAAACA+TGG - chr8_2:72557154-72557173 None:intergenic 30.0%
! TTGGATTTGGTAAGAATGAT+AGG + chr8_2:72557555-72557574 Msa1267370:CDS 30.0%
ATCCATAACTTTCTCAACAA+GGG - chr8_2:72557875-72557894 None:intergenic 30.0%
AATCCATAACTTTCTCAACA+AGG - chr8_2:72557876-72557895 None:intergenic 30.0%
CTTATTCTTTCTCATGACTA+TGG + chr8_2:72557948-72557967 Msa1267370:intron 30.0%
!! GTTGTTTTGTGATAAAAACG+AGG - chr8_2:72558126-72558145 None:intergenic 30.0%
CAGAAGTCAAAAACTATACA+TGG - chr8_2:72558177-72558196 None:intergenic 30.0%
TTTCTCTCTTCAATAGACTT+TGG + chr8_2:72558331-72558350 Msa1267370:intron 30.0%
CCATGTTATTCAAAACTATG+TGG - chr8_2:72558407-72558426 None:intergenic 30.0%
!!! CCACATAGTTTTGAATAACA+TGG + chr8_2:72558404-72558423 Msa1267370:intron 30.0%
GATCGAATGTACAAAATGAT+GGG + chr8_2:72558426-72558445 Msa1267370:intron 30.0%
ATCGAATGTACAAAATGATG+GGG + chr8_2:72558427-72558446 Msa1267370:intron 30.0%
ATGATTAGTGTAATTGGCAT+TGG + chr8_2:72558504-72558523 Msa1267370:intron 30.0%
GATAATGTTACAATGATGAG+TGG + chr8_2:72558641-72558660 Msa1267370:intron 30.0%
ATGAGTGGTTACATAAGATT+AGG + chr8_2:72558656-72558675 Msa1267370:intron 30.0%
TGGTTACATAAGATTAGGAA+AGG + chr8_2:72558661-72558680 Msa1267370:intron 30.0%
TTACATAAGATTAGGAAAGG+TGG + chr8_2:72558664-72558683 Msa1267370:intron 30.0%
AACTTTAGGTCAACTCATTT+AGG + chr8_2:72558833-72558852 Msa1267370:intron 30.0%
ACTTTAGGTCAACTCATTTA+GGG + chr8_2:72558834-72558853 Msa1267370:intron 30.0%
!! AAGATGACGGATTAAAATTG+GGG - chr8_2:72558983-72559002 None:intergenic 30.0%
!! CAAAGATGACGGATTAAAAT+TGG - chr8_2:72558985-72559004 None:intergenic 30.0%
TGTCAATTGTATAGGGAAAA+GGG - chr8_2:72559042-72559061 None:intergenic 30.0%
TTGTCAATTGTATAGGGAAA+AGG - chr8_2:72559043-72559062 None:intergenic 30.0%
GAGTCATTGTCAATTGTATA+GGG - chr8_2:72559049-72559068 None:intergenic 30.0%
TGAGTCATTGTCAATTGTAT+AGG - chr8_2:72559050-72559069 None:intergenic 30.0%
ATGATAGTCCAATCAAGAAT+TGG + chr8_2:72559084-72559103 Msa1267370:intron 30.0%
TGATAGTCCAATCAAGAATT+GGG + chr8_2:72559085-72559104 Msa1267370:intron 30.0%
AATGCATATTGCTAGAAATC+TGG + chr8_2:72559210-72559229 Msa1267370:intron 30.0%
TGGTTGAAATGGTTATTTAC+AGG + chr8_2:72559291-72559310 Msa1267370:intron 30.0%
CAAATACAAATCAAGTGGAA+AGG + chr8_2:72559424-72559443 Msa1267370:CDS 30.0%
TAAATAGTAGACAGTAGGAA+TGG - chr8_2:72559961-72559980 None:intergenic 30.0%
TTCCTACTGTCTACTATTTA+TGG + chr8_2:72559961-72559980 Msa1267370:intron 30.0%
TCCTACTGTCTACTATTTAT+GGG + chr8_2:72559962-72559981 Msa1267370:intron 30.0%
! GCAAGATTCTTGACTTTTAT+GGG + chr8_2:72560166-72560185 Msa1267370:three_prime_UTR 30.0%
TTCGTGTAAGTATTTATCGA+AGG + chr8_2:72560201-72560220 Msa1267370:intron 30.0%
!!! CCTTGTTTTTCTCTTTCTTT+CGG - chr8_2:72560237-72560256 None:intergenic 30.0%
GCAGAACACAATTTGAATAT+TGG + chr8_2:72560498-72560517 Msa1267370:three_prime_UTR 30.0%
AAATTACACTTATGTCCGAA+TGG - chr8_2:72560543-72560562 None:intergenic 30.0%
TTTCCTAGAGTGATAATTTC+AGG + chr8_2:72560650-72560669 Msa1267370:three_prime_UTR 30.0%
AATCCTGAAATTATCACTCT+AGG - chr8_2:72560656-72560675 None:intergenic 30.0%
AAAACTTCTTCAACAGTTCG+AGG - chr8_2:72556442-72556461 None:intergenic 35.0%
AGAGAAAGAGAAGAAGAAGA+AGG - chr8_2:72556584-72556603 None:intergenic 35.0%
CATGCTTAAAAAATGTGGCA+TGG - chr8_2:72556875-72556894 None:intergenic 35.0%
! AGGTTGTTATTGATTGTGGA+TGG - chr8_2:72556944-72556963 None:intergenic 35.0%
! CCATAGGTTGTTATTGATTG+TGG - chr8_2:72556948-72556967 None:intergenic 35.0%
CCACAATCAATAACAACCTA+TGG + chr8_2:72556945-72556964 Msa1267370:intron 35.0%
! AGAAGGCAATGAAGGTATAT+TGG - chr8_2:72557040-72557059 None:intergenic 35.0%
TTTAATTGGATACGGTGAGA+AGG - chr8_2:72557057-72557076 None:intergenic 35.0%
CTCATTGACAATTGCAGAAA+AGG + chr8_2:72557331-72557350 Msa1267370:intron 35.0%
TTTCATTTGGAAACCCATAG+AGG - chr8_2:72557367-72557386 None:intergenic 35.0%
ATGGGTTTCCAAATGAAACA+TGG + chr8_2:72557369-72557388 Msa1267370:CDS 35.0%
TGGGTTTCCAAATGAAACAT+GGG + chr8_2:72557370-72557389 Msa1267370:CDS 35.0%
TTCACTTCCCATGTTTCATT+TGG - chr8_2:72557380-72557399 None:intergenic 35.0%
CATTGGGTATAAACTTTGCT+CGG + chr8_2:72557441-72557460 Msa1267370:CDS 35.0%
ATTGGGTATAAACTTTGCTC+GGG + chr8_2:72557442-72557461 Msa1267370:CDS 35.0%
ATTCTTACCAAATCCAAAGC+GGG - chr8_2:72557552-72557571 None:intergenic 35.0%
CATTCTTACCAAATCCAAAG+CGG - chr8_2:72557553-72557572 None:intergenic 35.0%
TGAACTTCTTTGATGCATCT+AGG + chr8_2:72557591-72557610 Msa1267370:intron 35.0%
CTTAGTAGCATGCTCATAAA+TGG + chr8_2:72557811-72557830 Msa1267370:intron 35.0%
TCCATAACTTTCTCAACAAG+GGG - chr8_2:72557874-72557893 None:intergenic 35.0%
ATTCTTTCTCATGACTATGG+AGG + chr8_2:72557951-72557970 Msa1267370:intron 35.0%
TTCTGTGCTTCACAAAATGT+TGG + chr8_2:72557974-72557993 Msa1267370:intron 35.0%
TCTGTGCTTCACAAAATGTT+GGG + chr8_2:72557975-72557994 Msa1267370:intron 35.0%
! ATTTTGTCACACAGAGTACA+GGG - chr8_2:72558295-72558314 None:intergenic 35.0%
TCTATTGAAGAGAGAAACAG+GGG - chr8_2:72558328-72558347 None:intergenic 35.0%
GTCTATTGAAGAGAGAAACA+GGG - chr8_2:72558329-72558348 None:intergenic 35.0%
AGTCTATTGAAGAGAGAAAC+AGG - chr8_2:72558330-72558349 None:intergenic 35.0%
ACTTTGGTACTATAGCATGT+TGG + chr8_2:72558347-72558366 Msa1267370:intron 35.0%
CTTTGGTACTATAGCATGTT+GGG + chr8_2:72558348-72558367 Msa1267370:intron 35.0%
GGATCGAATGTACAAAATGA+TGG + chr8_2:72558425-72558444 Msa1267370:intron 35.0%
GTAGTCCCATATAGCATTAT+TGG - chr8_2:72558571-72558590 None:intergenic 35.0%
AATGCTATATGGGACTACAT+AGG + chr8_2:72558573-72558592 Msa1267370:intron 35.0%
ATGCTATATGGGACTACATA+GGG + chr8_2:72558574-72558593 Msa1267370:intron 35.0%
TCTACACTCAAAACCACTTA+AGG - chr8_2:72558700-72558719 None:intergenic 35.0%
AGCCATTATAGGTCTATTGT+TGG + chr8_2:72558925-72558944 Msa1267370:intron 35.0%
TGCCAACAATAGACCTATAA+TGG - chr8_2:72558930-72558949 None:intergenic 35.0%
GATAGTCCAATCAAGAATTG+GGG + chr8_2:72559086-72559105 Msa1267370:intron 35.0%
TTGAGGCTCCTTAAGAAATA+TGG - chr8_2:72559184-72559203 None:intergenic 35.0%
CAATATGCATTCTCTTGTTG+AGG - chr8_2:72559201-72559220 None:intergenic 35.0%
!! TTAAAAGGAAGCATCCAAAC+AGG - chr8_2:72559524-72559543 None:intergenic 35.0%
! GAAGAAGATGATGATGAACA+AGG + chr8_2:72559628-72559647 Msa1267370:CDS 35.0%
ACAACAGATCCAGAATTCAT+CGG - chr8_2:72559689-72559708 None:intergenic 35.0%
TGTTAAAATTACTCCTGCCA+AGG + chr8_2:72559741-72559760 Msa1267370:CDS 35.0%
AGTATCAAGAAGCCAAGAAT+TGG + chr8_2:72559799-72559818 Msa1267370:CDS 35.0%
!! ATTTTAATCTTGCCCGCTAA+TGG - chr8_2:72559844-72559863 None:intergenic 35.0%
!! TAAAGAGCATTGACTAGAAC+AGG - chr8_2:72559902-72559921 None:intergenic 35.0%
TCCCATAAATAGTAGACAGT+AGG - chr8_2:72559966-72559985 None:intergenic 35.0%
! GGCAAGATTCTTGACTTTTA+TGG + chr8_2:72560165-72560184 Msa1267370:three_prime_UTR 35.0%
CCGAAAGAAAGAGAAAAACA+AGG + chr8_2:72560234-72560253 Msa1267370:intron 35.0%
!! TTTCATTTTTAACAGCCTCG+AGG + chr8_2:72560290-72560309 Msa1267370:intron 35.0%
ATCTCAAGATCATTTCTCCA+CGG - chr8_2:72560374-72560393 None:intergenic 35.0%
ATTGAAGCTACTGTTGAGAA+GGG + chr8_2:72560398-72560417 Msa1267370:three_prime_UTR 35.0%
CAAGCATTACAACGATGAAA+GGG - chr8_2:72560461-72560480 None:intergenic 35.0%
AATCTTCAGATTGCATCTTG+CGG + chr8_2:72560590-72560609 Msa1267370:three_prime_UTR 35.0%
GAAATTGAGGATGGAAGGAA+TGG + chr8_2:72556402-72556421 Msa1267370:exon 40.0%
! AGTGAGAGCTTTGATCAAAC+CGG - chr8_2:72556488-72556507 None:intergenic 40.0%
TTGATCAAAGCTCTCACTAC+TGG + chr8_2:72556490-72556509 Msa1267370:CDS 40.0%
TGAAGAACAGAGAACTAACC+GGG - chr8_2:72556641-72556660 None:intergenic 40.0%
GTGAAGAACAGAGAACTAAC+CGG - chr8_2:72556642-72556661 None:intergenic 40.0%
! ATTAAAAGCGCAGAGACAGA+CGG - chr8_2:72556664-72556683 None:intergenic 40.0%
!!! GCCACATTTTTTAAGCATGC+TGG + chr8_2:72556876-72556895 Msa1267370:intron 40.0%
GCCAGCATGCTTAAAAAATG+TGG - chr8_2:72556880-72556899 None:intergenic 40.0%
AGTTGCAGTTGATCATCCAT+AGG - chr8_2:72556964-72556983 None:intergenic 40.0%
CCGGTGAGTTTAATTGGATA+CGG - chr8_2:72557065-72557084 None:intergenic 40.0%
CCGTATCCAATTAAACTCAC+CGG + chr8_2:72557062-72557081 Msa1267370:intron 40.0%
CAAAGAGAAAAACGACAGAC+CGG - chr8_2:72557084-72557103 None:intergenic 40.0%
! TTCCTATTTGGGATAGGCTA+CGG - chr8_2:72557259-72557278 None:intergenic 40.0%
!! GGGTTTTTCCTATTTGGGAT+AGG - chr8_2:72557265-72557284 None:intergenic 40.0%
AAGGAGAATTTGTGCCTCTA+TGG + chr8_2:72557350-72557369 Msa1267370:CDS 40.0%
AGGAGAATTTGTGCCTCTAT+GGG + chr8_2:72557351-72557370 Msa1267370:CDS 40.0%
GCAAAGTTTATACCCAATGC+TGG - chr8_2:72557440-72557459 None:intergenic 40.0%
!!! CTCGCTGTTGCTTTCTATTT+TGG + chr8_2:72557524-72557543 Msa1267370:CDS 40.0%
CCATAACTTTCTCAACAAGG+GGG - chr8_2:72557873-72557892 None:intergenic 40.0%
CTGTGCTTCACAAAATGTTG+GGG + chr8_2:72557976-72557995 Msa1267370:intron 40.0%
TAGCTAAAATCACGGAGGAA+TGG + chr8_2:72558039-72558058 Msa1267370:intron 40.0%
GAGGAATGGTAGAGAAATTG+CGG + chr8_2:72558053-72558072 Msa1267370:intron 40.0%
TAGAGAAATTGCGGAGAAGA+TGG + chr8_2:72558062-72558081 Msa1267370:intron 40.0%
AGAGAAATTGCGGAGAAGAT+GGG + chr8_2:72558063-72558082 Msa1267370:intron 40.0%
! TTTTGTCACACAGAGTACAG+GGG - chr8_2:72558294-72558313 None:intergenic 40.0%
! GATTTTGTCACACAGAGTAC+AGG - chr8_2:72558296-72558315 None:intergenic 40.0%
TGATGGTTAGCGTAGCATAA+TGG - chr8_2:72558380-72558399 None:intergenic 40.0%
TATGCTACGCTAACCATCAT+TGG + chr8_2:72558381-72558400 Msa1267370:intron 40.0%
CAAAACTATGTGGCCAATGA+TGG - chr8_2:72558397-72558416 None:intergenic 40.0%
GTCAATCACAGGATCTTTGT+AGG + chr8_2:72558464-72558483 Msa1267370:intron 40.0%
ATCACAGGATCTTTGTAGGA+TGG + chr8_2:72558468-72558487 Msa1267370:intron 40.0%
TGCTATATGGGACTACATAG+GGG + chr8_2:72558575-72558594 Msa1267370:intron 40.0%
ATTCTTGCCTCAAGTGCTTT+GGG + chr8_2:72558731-72558750 Msa1267370:intron 40.0%
ATTCTGATGCTCAAGGTAGA+GGG + chr8_2:72558800-72558819 Msa1267370:intron 40.0%
CTTCTTGCAAATGCAGGATA+AGG - chr8_2:72558954-72558973 None:intergenic 40.0%
AATCTGCTTCTTGCAAATGC+AGG - chr8_2:72558960-72558979 None:intergenic 40.0%
ATAGGGAAAAGGGATCCAAT+GGG - chr8_2:72559032-72559051 None:intergenic 40.0%
TATAGGGAAAAGGGATCCAA+TGG - chr8_2:72559033-72559052 None:intergenic 40.0%
ACATCTCCCCAATTCTTGAT+TGG - chr8_2:72559095-72559114 None:intergenic 40.0%
CAAAATAATTGGCATAGGGC+AGG + chr8_2:72559130-72559149 Msa1267370:intron 40.0%
AGGAACTGCTAAGCAATCAA+AGG + chr8_2:72559367-72559386 Msa1267370:CDS 40.0%
TTCTATCACTGCCATGCATA+TGG + chr8_2:72559482-72559501 Msa1267370:intron 40.0%
ACGAGTGAATTCCATATGCA+TGG - chr8_2:72559496-72559515 None:intergenic 40.0%
! TTCACTCGTGTTTTCCTGTT+TGG + chr8_2:72559507-72559526 Msa1267370:intron 40.0%
GGTGCTTGTGGTGATAATTA+TGG + chr8_2:72559661-72559680 Msa1267370:CDS 40.0%
!! ATTATGGCACCGATGAATTC+TGG + chr8_2:72559677-72559696 Msa1267370:CDS 40.0%
GTTGTGATATGTGCGAGAAA+TGG + chr8_2:72559704-72559723 Msa1267370:CDS 40.0%
GTTCAGAGCTATCCAATTCT+TGG - chr8_2:72559814-72559833 None:intergenic 40.0%
!! ATTGGATAGCTCTGAACGTT+TGG + chr8_2:72559817-72559836 Msa1267370:exon 40.0%
TTGACTAGAACAGGCAACAA+TGG - chr8_2:72559893-72559912 None:intergenic 40.0%
TCTCCAAGATTGTCCTCAAA+GGG + chr8_2:72560125-72560144 Msa1267370:three_prime_UTR 40.0%
! AGGAAATTTGAGGTGACTGA+AGG + chr8_2:72560310-72560329 Msa1267370:three_prime_UTR 40.0%
ATGCTTAGATTAAGCTACCG+TGG + chr8_2:72560354-72560373 Msa1267370:three_prime_UTR 40.0%
CATTGAAGCTACTGTTGAGA+AGG + chr8_2:72560397-72560416 Msa1267370:three_prime_UTR 40.0%
CCAAGCATTACAACGATGAA+AGG - chr8_2:72560462-72560481 None:intergenic 40.0%
CCTTTCATCGTTGTAATGCT+TGG + chr8_2:72560459-72560478 Msa1267370:three_prime_UTR 40.0%
! TTGGTGTACAGTTCTGATCT+TGG + chr8_2:72560517-72560536 Msa1267370:three_prime_UTR 40.0%
ATCTTCAGATTGCATCTTGC+GGG + chr8_2:72560591-72560610 Msa1267370:three_prime_UTR 40.0%
! CTTCAACAGTTCGAGGTACT+GGG - chr8_2:72556435-72556454 None:intergenic 45.0%
TCTTCAACAGTTCGAGGTAC+TGG - chr8_2:72556436-72556455 None:intergenic 45.0%
TCTGCTATGCTCTTACTCCT+AGG + chr8_2:72556695-72556714 Msa1267370:intron 45.0%
CTGCTATGCTCTTACTCCTA+GGG + chr8_2:72556696-72556715 Msa1267370:intron 45.0%
! ACAACTTTTCTGCTGCAGTG+CGG + chr8_2:72556818-72556837 Msa1267370:intron 45.0%
ATACGGTGAGAAGGCAATGA+AGG - chr8_2:72557048-72557067 None:intergenic 45.0%
GACAGACCGGTGAGTTTAAT+TGG - chr8_2:72557071-72557090 None:intergenic 45.0%
!! TTTATACCCAATGCTGGCTC+GGG - chr8_2:72557434-72557453 None:intergenic 45.0%
! GTTTATACCCAATGCTGGCT+CGG - chr8_2:72557435-72557454 None:intergenic 45.0%
GGTATAAACTTTGCTCGGGA+TGG + chr8_2:72557446-72557465 Msa1267370:CDS 45.0%
TTGCAGTTCACAGTGACTCA+TGG + chr8_2:72557498-72557517 Msa1267370:CDS 45.0%
!!! TTCTATTTTGGTGCCCGCTT+TGG + chr8_2:72557536-72557555 Msa1267370:CDS 45.0%
CCCCCTTGTTGAGAAAGTTA+TGG + chr8_2:72557870-72557889 Msa1267370:intron 45.0%
ATCAACATGGGACGTGACTA+TGG + chr8_2:72557921-72557940 Msa1267370:intron 45.0%
TCAACATGGGACGTGACTAT+GGG + chr8_2:72557922-72557941 Msa1267370:intron 45.0%
TGCTTCACAAAATGTTGGGG+TGG + chr8_2:72557979-72557998 Msa1267370:intron 45.0%
GAGAAATTGCGGAGAAGATG+GGG + chr8_2:72558064-72558083 Msa1267370:intron 45.0%
TGTGACCTTTGTTGGACATG+CGG + chr8_2:72558230-72558249 Msa1267370:intron 45.0%
TAGATGACCACGTCAATCAC+AGG + chr8_2:72558453-72558472 Msa1267370:intron 45.0%
CAAAGATCCTGTGATTGACG+TGG - chr8_2:72558463-72558482 None:intergenic 45.0%
CACTCGGCTCACTTTCTTTA+TGG - chr8_2:72558611-72558630 None:intergenic 45.0%
TGGTTGAGTCTTGCCTTAAG+TGG + chr8_2:72558684-72558703 Msa1267370:intron 45.0%
GATTCTTGCCTCAAGTGCTT+TGG + chr8_2:72558730-72558749 Msa1267370:intron 45.0%
TTCTTGCCTCAAGTGCTTTG+GGG + chr8_2:72558732-72558751 Msa1267370:intron 45.0%
! AGAACCAAGGTATCCCCAAT+CGG + chr8_2:72558766-72558785 Msa1267370:intron 45.0%
AATCAGACCATCCTCCGATT+GGG - chr8_2:72558783-72558802 None:intergenic 45.0%
TGGTCTGATTCTGATGCTCA+AGG + chr8_2:72558793-72558812 Msa1267370:intron 45.0%
GATTCTGATGCTCAAGGTAG+AGG + chr8_2:72558799-72558818 Msa1267370:intron 45.0%
GTTGCAAGCTCAAAGACTGT+GGG - chr8_2:72559347-72559366 None:intergenic 45.0%
TGTTGCAAGCTCAAAGACTG+TGG - chr8_2:72559348-72559367 None:intergenic 45.0%
ACAGTCTTTGAGCTTGCAAC+AGG + chr8_2:72559347-72559366 Msa1267370:CDS 45.0%
CATTGTTGTGAGCAGTCAGT+TGG - chr8_2:72559394-72559413 None:intergenic 45.0%
CAACTGACTGCTCACAACAA+TGG + chr8_2:72559392-72559411 Msa1267370:CDS 45.0%
CTGTCAACCTCTTCTTTGAC+CGG - chr8_2:72559595-72559614 None:intergenic 45.0%
GTCAAAGAAGAGGTTGACAG+TGG + chr8_2:72559595-72559614 Msa1267370:CDS 45.0%
ATTATCACCACAAGCACCAC+AGG - chr8_2:72559659-72559678 None:intergenic 45.0%
ATGTGCGAGAAATGGTTCCA+TGG + chr8_2:72559712-72559731 Msa1267370:CDS 45.0%
TTGCTTGATGTGTTCAGCCT+TGG - chr8_2:72559761-72559780 None:intergenic 45.0%
ATCAAGCAATACAAGTGCCC+TGG + chr8_2:72559772-72559791 Msa1267370:CDS 45.0%
CTGAACGTTTGGACCATTAG+CGG + chr8_2:72559828-72559847 Msa1267370:three_prime_UTR 45.0%
TGAACGTTTGGACCATTAGC+GGG + chr8_2:72559829-72559848 Msa1267370:three_prime_UTR 45.0%
GTCTCCAAGATTGTCCTCAA+AGG + chr8_2:72560124-72560143 Msa1267370:three_prime_UTR 45.0%
! AGTCCCTTTGAGGACAATCT+TGG - chr8_2:72560131-72560150 None:intergenic 45.0%
AGATTGTCCTCAAAGGGACT+TGG + chr8_2:72560131-72560150 Msa1267370:three_prime_UTR 45.0%
AACAGCCTCGAGGAAATTTG+AGG + chr8_2:72560300-72560319 Msa1267370:intron 45.0%
AGTCACCTCAAATTTCCTCG+AGG - chr8_2:72560308-72560327 None:intergenic 45.0%
CATCGTTGTAATGCTTGGTC+TGG + chr8_2:72560464-72560483 Msa1267370:three_prime_UTR 45.0%
TTGTAATGCTTGGTCTGGTG+AGG + chr8_2:72560469-72560488 Msa1267370:three_prime_UTR 45.0%
! CAGTTCTGATCTTGGCCATT+CGG + chr8_2:72560525-72560544 Msa1267370:three_prime_UTR 45.0%
!! TTATATTATAAATATTTGAA+TGG + chr8_2:72557198-72557217 Msa1267370:intron 5.0%
! TTTTACCAGCTCTGCGATCC+CGG + chr8_2:72556620-72556639 Msa1267370:CDS 50.0%
! CAACTTTTCTGCTGCAGTGC+GGG + chr8_2:72556819-72556838 Msa1267370:intron 50.0%
! AACTTTTCTGCTGCAGTGCG+GGG + chr8_2:72556820-72556839 Msa1267370:intron 50.0%
! CTATTTGGGATAGGCTACGG+AGG - chr8_2:72557256-72557275 None:intergenic 50.0%
CTCCGTAGCCTATCCCAAAT+AGG + chr8_2:72557254-72557273 Msa1267370:intron 50.0%
GGAAGTGAACTTGCCTGTTG+AGG + chr8_2:72557391-72557410 Msa1267370:CDS 50.0%
ATGGAATGCAGGAGAAGGAC+TGG + chr8_2:72557465-72557484 Msa1267370:CDS 50.0%
!! GGAGAAGGACTGGTTATCAC+TGG + chr8_2:72557475-72557494 Msa1267370:CDS 50.0%
!! TTTGGTGCCCGCTTTGGATT+TGG + chr8_2:72557542-72557561 Msa1267370:CDS 50.0%
CACAAAATGTTGGGGTGGAG+TGG + chr8_2:72557984-72558003 Msa1267370:intron 50.0%
TGCGGGGGTAGCTAAAATCA+CGG + chr8_2:72558031-72558050 Msa1267370:intron 50.0%
CACCTCTCTGTGACCTTTGT+TGG + chr8_2:72558222-72558241 Msa1267370:intron 50.0%
GTCCAACAAAGGTCACAGAG+AGG - chr8_2:72558227-72558246 None:intergenic 50.0%
AGAGAGAAACAGGGGAGAAG+AGG - chr8_2:72558320-72558339 None:intergenic 50.0%
!! CTCAAGTGCTTTGGGGATGT+GGG + chr8_2:72558739-72558758 Msa1267370:intron 50.0%
!! TCAAGTGCTTTGGGGATGTG+GGG + chr8_2:72558740-72558759 Msa1267370:intron 50.0%
ATCAGACCATCCTCCGATTG+GGG - chr8_2:72558782-72558801 None:intergenic 50.0%
GAATCAGACCATCCTCCGAT+TGG - chr8_2:72558784-72558803 None:intergenic 50.0%
! GACAGGAGCTTTGTAGCACA+AGG - chr8_2:72558880-72558899 None:intergenic 50.0%
GTGCTACAAAGCTCCTGTCA+TGG + chr8_2:72558881-72558900 Msa1267370:intron 50.0%
TACAAAGCTCCTGTCATGGC+AGG + chr8_2:72558885-72558904 Msa1267370:intron 50.0%
ACAAAGCTCCTGTCATGGCA+GGG + chr8_2:72558886-72558905 Msa1267370:intron 50.0%
GGAAGGGTTGGAGCCATTAT+AGG + chr8_2:72558914-72558933 Msa1267370:intron 50.0%
AAAAGGGATCCAATGGGAGG+GGG - chr8_2:72559026-72559045 None:intergenic 50.0%
GAAAAGGGATCCAATGGGAG+GGG - chr8_2:72559027-72559046 None:intergenic 50.0%
GGAAAAGGGATCCAATGGGA+GGG - chr8_2:72559028-72559047 None:intergenic 50.0%
AGACTGGCGGGACTGTTAAA+AGG - chr8_2:72559539-72559558 None:intergenic 50.0%
CAGTCTGAATCCCAGACCAA+GGG + chr8_2:72559553-72559572 Msa1267370:CDS 50.0%
CATCTTCACACCCTTGGTCT+GGG - chr8_2:72559566-72559585 None:intergenic 50.0%
ACATCTTCACACCCTTGGTC+TGG - chr8_2:72559567-72559586 None:intergenic 50.0%
TGCAGACATCTTCACACCCT+TGG - chr8_2:72559572-72559591 None:intergenic 50.0%
GGTTGACAGTGGAGAAGAAG+AGG + chr8_2:72559606-72559625 Msa1267370:CDS 50.0%
GATGAACAAGGTGCAACCTG+TGG + chr8_2:72559640-72559659 Msa1267370:CDS 50.0%
TTGATGTGTTCAGCCTTGGC+AGG - chr8_2:72559757-72559776 None:intergenic 50.0%
GCTTCTTGATACTGCAGCCA+GGG - chr8_2:72559792-72559811 None:intergenic 50.0%
GATTACAAAGGCAGACGCGC+CGG + chr8_2:72556466-72556485 Msa1267370:CDS 55.0%
AGGCGGCAGAAAACAGCACA+GGG - chr8_2:72556902-72556921 None:intergenic 55.0%
AAGGCGGCAGAAAACAGCAC+AGG - chr8_2:72556903-72556922 None:intergenic 55.0%
!! TCAGGAGGCACTTCCTCAAC+AGG - chr8_2:72557407-72557426 None:intergenic 55.0%
!! AATGCTGGCTCGGGAAGTTC+AGG - chr8_2:72557425-72557444 None:intergenic 55.0%
TGAACTTCCCGAGCCAGCAT+TGG + chr8_2:72557424-72557443 Msa1267370:CDS 55.0%
GAACTTCCCGAGCCAGCATT+GGG + chr8_2:72557425-72557444 Msa1267370:CDS 55.0%
CTTTGCTCGGGATGGAATGC+AGG + chr8_2:72557454-72557473 Msa1267370:CDS 55.0%
TCGGGATGGAATGCAGGAGA+AGG + chr8_2:72557460-72557479 Msa1267370:CDS 55.0%
GGGGGTAGCTAAAATCACGG+AGG + chr8_2:72558034-72558053 Msa1267370:intron 55.0%
GAGATCGTGGAAGCGAAGAG+CGG - chr8_2:72558203-72558222 None:intergenic 55.0%
GTCACAGAGAGGTGAGATCG+TGG - chr8_2:72558216-72558235 None:intergenic 55.0%
CTTTGTTGGACATGCGGCTC+CGG + chr8_2:72558236-72558255 Msa1267370:intron 55.0%
CACAGAGTACAGGGGAGAGA+AGG - chr8_2:72558286-72558305 None:intergenic 55.0%
! CCACATCCCCAAAGCACTTG+AGG - chr8_2:72558741-72558760 None:intergenic 55.0%
!! CCTCAAGTGCTTTGGGGATG+TGG + chr8_2:72558738-72558757 Msa1267370:intron 55.0%
GGATGTGGGGAGAAGAACCA+AGG + chr8_2:72558753-72558772 Msa1267370:intron 55.0%
! ACCAAGGTATCCCCAATCGG+AGG + chr8_2:72558769-72558788 Msa1267370:intron 55.0%
TCCTCCGATTGGGGATACCT+TGG - chr8_2:72558773-72558792 None:intergenic 55.0%
AGGTATCCCCAATCGGAGGA+TGG + chr8_2:72558773-72558792 Msa1267370:intron 55.0%
TAATGGCTCCAACCCTTCCC+TGG - chr8_2:72558913-72558932 None:intergenic 55.0%
GGGAAAAGGGATCCAATGGG+AGG - chr8_2:72559029-72559048 None:intergenic 55.0%
! TGGTCTGGGATTCAGACTGG+CGG - chr8_2:72559552-72559571 None:intergenic 55.0%
! CCTTGGTCTGGGATTCAGAC+TGG - chr8_2:72559555-72559574 None:intergenic 55.0%
CCAGTCTGAATCCCAGACCA+AGG + chr8_2:72559552-72559571 Msa1267370:CDS 55.0%
GGGTGTGAAGATGTCTGCAC+CGG + chr8_2:72559573-72559592 Msa1267370:CDS 55.0%
! GTCTGCACCGGTCAAAGAAG+AGG + chr8_2:72559585-72559604 Msa1267370:CDS 55.0%
GGCTTCTTGATACTGCAGCC+AGG - chr8_2:72559793-72559812 None:intergenic 55.0%
GCAGCATCCAAGTCCCTTTG+AGG - chr8_2:72560141-72560160 None:intergenic 55.0%
ACTAACCGGGATCGCAGAGC+TGG - chr8_2:72556628-72556647 None:intergenic 60.0%
TGCTGCAGTGCGGGGTGAAT+TGG + chr8_2:72556828-72556847 Msa1267370:intron 60.0%
GCTGCAGTGCGGGGTGAATT+GGG + chr8_2:72556829-72556848 Msa1267370:intron 60.0%
CTGCAGTGCGGGGTGAATTG+GGG + chr8_2:72556830-72556849 Msa1267370:intron 60.0%
GGTGGAGTGGATCTGCGTTG+CGG + chr8_2:72557997-72558016 Msa1267370:intron 60.0%
GTTGCGGCCATAGTGCTGTG+CGG + chr8_2:72558013-72558032 Msa1267370:intron 60.0%
TTGCGGCCATAGTGCTGTGC+GGG + chr8_2:72558014-72558033 Msa1267370:intron 60.0%
CGGAGCCGCATGTCCAACAA+AGG - chr8_2:72558238-72558257 None:intergenic 60.0%
TACAGGGGAGAGAAGGTCGC+CGG - chr8_2:72558279-72558298 None:intergenic 60.0%
TCCTGTCATGGCAGGGTCCA+GGG + chr8_2:72558893-72558912 Msa1267370:intron 60.0%
TCATGGCAGGGTCCAGGGAA+GGG + chr8_2:72558898-72558917 Msa1267370:intron 60.0%
CTTGAGTCACCCCCTCCCAT+TGG + chr8_2:72559014-72559033 Msa1267370:intron 60.0%
! GGTCTGGGATTCAGACTGGC+GGG - chr8_2:72559551-72559570 None:intergenic 60.0%
GGTGCAACCTGTGGTGCTTG+TGG + chr8_2:72559649-72559668 Msa1267370:CDS 60.0%
AGGGACTTGGATGCTGCTCG+TGG + chr8_2:72560144-72560163 Msa1267370:three_prime_UTR 60.0%
!! GCTGGCTCGGGAAGTTCAGG+AGG - chr8_2:72557422-72557441 None:intergenic 65.0%
TGCGGCCATAGTGCTGTGCG+GGG + chr8_2:72558015-72558034 Msa1267370:intron 65.0%
GCTACCCCCGCACAGCACTA+TGG - chr8_2:72558023-72558042 None:intergenic 65.0%
CTCCTGTCATGGCAGGGTCC+AGG + chr8_2:72558892-72558911 Msa1267370:intron 65.0%
TCCCTGGACCCTGCCATGAC+AGG - chr8_2:72558897-72558916 None:intergenic 65.0%
GTCATGGCAGGGTCCAGGGA+AGG + chr8_2:72558897-72558916 Msa1267370:intron 65.0%
GCGGCCATAGTGCTGTGCGG+GGG + chr8_2:72558016-72558035 Msa1267370:intron 70.0%
TTGGACATGCGGCTCCGGCG+CGG + chr8_2:72558241-72558260 Msa1267370:intron 70.0%
GGCAGGGTCCAGGGAAGGGT+TGG + chr8_2:72558902-72558921 Msa1267370:intron 70.0%
GGAGTCAGCACCAGCCGCGC+CGG - chr8_2:72558258-72558277 None:intergenic 75.0%
!! GGCGCGGCTGGTGCTGACTC+CGG + chr8_2:72558257-72558276 Msa1267370:intron 75.0%
! ACATGCGGCTCCGGCGCGGC+TGG + chr8_2:72558245-72558264 Msa1267370:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 72556333 72560715 72556333 ID=Msa1267370;Name=Msa1267370
chr8_2 mRNA 72556333 72560715 72556333 ID=Msa1267370-mRNA-1;Parent=Msa1267370;Name=Msa1267370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=79|1|1|1|0.66|0.57|7|581|257
chr8_2 exon 72556333 72556511 72556333 ID=Msa1267370-mRNA-1:exon:24574;Parent=Msa1267370-mRNA-1
chr8_2 exon 72556609 72556641 72556609 ID=Msa1267370-mRNA-1:exon:24575;Parent=Msa1267370-mRNA-1
chr8_2 exon 72557348 72557576 72557348 ID=Msa1267370-mRNA-1:exon:24576;Parent=Msa1267370-mRNA-1
chr8_2 exon 72559313 72559445 72559313 ID=Msa1267370-mRNA-1:exon:24577;Parent=Msa1267370-mRNA-1
chr8_2 exon 72559547 72559879 72559547 ID=Msa1267370-mRNA-1:exon:24578;Parent=Msa1267370-mRNA-1
chr8_2 exon 72560090 72560205 72560090 ID=Msa1267370-mRNA-1:exon:24579;Parent=Msa1267370-mRNA-1
chr8_2 exon 72560305 72560715 72560305 ID=Msa1267370-mRNA-1:exon:24580;Parent=Msa1267370-mRNA-1
chr8_2 five_prime_UTR 72556333 72556411 72556333 ID=Msa1267370-mRNA-1:five_prime_utr;Parent=Msa1267370-mRNA-1
chr8_2 CDS 72556412 72556511 72556412 ID=Msa1267370-mRNA-1:cds;Parent=Msa1267370-mRNA-1
chr8_2 CDS 72556609 72556641 72556609 ID=Msa1267370-mRNA-1:cds;Parent=Msa1267370-mRNA-1
chr8_2 CDS 72557348 72557576 72557348 ID=Msa1267370-mRNA-1:cds;Parent=Msa1267370-mRNA-1
chr8_2 CDS 72559313 72559445 72559313 ID=Msa1267370-mRNA-1:cds;Parent=Msa1267370-mRNA-1
chr8_2 CDS 72559547 72559825 72559547 ID=Msa1267370-mRNA-1:cds;Parent=Msa1267370-mRNA-1
chr8_2 three_prime_UTR 72559826 72559879 72559826 ID=Msa1267370-mRNA-1:three_prime_utr;Parent=Msa1267370-mRNA-1
chr8_2 three_prime_UTR 72560090 72560205 72560090 ID=Msa1267370-mRNA-1:three_prime_utr;Parent=Msa1267370-mRNA-1
chr8_2 three_prime_UTR 72560305 72560715 72560305 ID=Msa1267370-mRNA-1:three_prime_utr;Parent=Msa1267370-mRNA-1
Gene Sequence

>Msa1267370

ATGGAAGGAATGGCACAGCACCCAGTACCTCGAACTGTTGAAGAAGTTTTTAGCGATTACAAAGGCAGACGCGCCGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGAAAAGGAGAATTTGTGCCTCTATGGGTTTCCAAATGAAACATGGGAAGTGAACTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATAAACTTTGCTCGGGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGATAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCCACAGTCTTTGAGCTTGCAACAGGAACTGCTAAGCAATCAAAGGACCAACTGACTGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCCCGCCAGTCTGAATCCCAGACCAAGGGTGTGAAGATGTCTGCACCGGTCAAAGAAGAGGTTGACAGTGGAGAAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACCGATGAATTCTGGATCTGTTGTGATATGTGCGAGAAATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCTGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG
Protein sequence

>Msa1267370

MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG*