AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143300 MtrunA17_Chr7g0266021 83.890 1018 65 8 40 1002 1 974 0.0 1672
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143300 AT2G36370.1 44.021 970 425 9 80 1002 42 940 0.0 774

Find 224 sgRNAs with CRISPR-Local

Find 818 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTTCACTTGATATTTC+TGG 0.070713 1_4:+2189821 Msa0143300:CDS
TTAGGTGGATAGTTAGTTTA+TGG 0.158903 1_4:+2186508 Msa0143300:five_prime_UTR
GTCTCAAAACTGTAGAAATT+TGG 0.163579 1_4:+2195452 Msa0143300:CDS
GAACAGTTCTTTATTAATTC+TGG 0.163970 1_4:+2191071 Msa0143300:CDS
TGAAAGTAACATGGAAAATT+TGG 0.179484 1_4:+2188094 Msa0143300:CDS
TTGTGTCACCTGAATATTAA+AGG 0.212400 1_4:+2191682 Msa0143300:CDS
AATCAGTTTCCTTCGGTTAT+TGG 0.225580 1_4:+2191280 Msa0143300:CDS
TCATTCTTACATAAGAATTT+AGG 0.231967 1_4:+2186490 Msa0143300:five_prime_UTR
TCTCTGATGCACTTCTTCTT+TGG 0.240974 1_4:+2188069 Msa0143300:CDS
TGGAGGAAATTAGCGTAGTT+TGG 0.250284 1_4:+2186528 Msa0143300:five_prime_UTR
ACACAATGAAACAAAGAATT+TGG 0.252954 1_4:-2191665 None:intergenic
TCTTAGGGAGCACTTTATTT+TGG 0.259044 1_4:+2187325 Msa0143300:intron
TTCCTTCTCTCTAAGTGCTT+TGG 0.282939 1_4:+2193259 Msa0143300:CDS
CTGAACTGCTTCAAAGATAA+AGG 0.289299 1_4:-2191141 None:intergenic
GCATATATATCGCTGTTCTT+TGG 0.291326 1_4:+2187059 Msa0143300:CDS
TTTGGTTGAGCTTTCATTGC+TGG 0.296660 1_4:+2195470 Msa0143300:CDS
ATCTCATTCTCTTCTTCAAT+TGG 0.311419 1_4:-2186747 None:intergenic
CCCTCAAGGACAGTTGTAAA+TGG 0.313753 1_4:+2192439 Msa0143300:CDS
CCTTTCCATACGCAGGGCCT+TGG 0.323626 1_4:+2197520 Msa0143300:intron
GTGGTCTGTGATACTTCATT+TGG 0.325392 1_4:+2191772 Msa0143300:CDS
CTTTATCTTTGAAGCAGTTC+AGG 0.325583 1_4:+2191142 Msa0143300:CDS
GGAGGAAATTAGCGTAGTTT+GGG 0.329166 1_4:+2186529 Msa0143300:five_prime_UTR
TTGGTTCACTTGATATTTCT+GGG 0.331157 1_4:+2189822 Msa0143300:CDS
TTAATTTACTACCTCGTAAA+GGG 0.334057 1_4:-2187106 None:intergenic
GAAGATAACAGTAAGTTATA+TGG 0.338219 1_4:-2187918 None:intergenic
AAGACCATCAATGTAGGTTT+AGG 0.343362 1_4:+2193302 Msa0143300:CDS
GGAAGAAATTGAATTTGGTT+GGG 0.359709 1_4:+2193229 Msa0143300:CDS
AAACACATCCTTTAATATTC+AGG 0.360453 1_4:-2191690 None:intergenic
ATGGATGACAAATGATGATT+TGG 0.364837 1_4:+2195422 Msa0143300:CDS
TTAGCTATGTGCTATTGTTT+TGG 0.375038 1_4:+2195327 Msa0143300:CDS
GCACTGAATATTCTCCCTAT+TGG 0.375220 1_4:+2189803 Msa0143300:CDS
GAAATATCAAGTGAACCAAT+AGG 0.379810 1_4:-2189818 None:intergenic
GAAGAACTGCATGCTGAGTT+AGG 0.386005 1_4:+2193191 Msa0143300:CDS
AGATTGGAAGAAATTGAATT+TGG 0.390991 1_4:+2193224 Msa0143300:CDS
GTAGGTTTAGGTGGAATGTT+AGG 0.394555 1_4:+2193314 Msa0143300:CDS
TCAAGACTTGGGGTCTTCTC+TGG 0.401933 1_4:-2191410 None:intergenic
GTAACTGATGCTGGAATTAG+AGG 0.402030 1_4:-2191350 None:intergenic
TGGAAGAAATTGAATTTGGT+TGG 0.404614 1_4:+2193228 Msa0143300:CDS
GGATGCATATCTAGAAGAAT+TGG 0.405148 1_4:+2198654 Msa0143300:three_prime_UTR
GATCGAAACAACGCAAAACT+TGG 0.405245 1_4:+2186604 Msa0143300:CDS
TCTAGCAAGGGACAGATTGC+TGG 0.406536 1_4:-2193359 None:intergenic
TTGGTTGAGCTTTCATTGCT+GGG 0.407344 1_4:+2195471 Msa0143300:CDS
CCGCCTCCATCACTGTCAAT+TGG 0.407651 1_4:+2187007 Msa0143300:CDS
TAATCTTCAAGCTCTGCATA+TGG 0.410536 1_4:+2191891 Msa0143300:CDS
GCGGTGTGCGTGAAGTTTGA+TGG 0.412456 1_4:-2186829 None:intergenic
GCCTTCTCAGTGGAAGCTTC+AGG 0.413370 1_4:+2186886 Msa0143300:CDS
GAATTCATACTTCTCTTGTA+TGG 0.413612 1_4:-2191099 None:intergenic
AACTTCACGCACACCGCAAC+AGG 0.416021 1_4:+2186835 Msa0143300:CDS
TCCACCTAAACCTACATTGA+TGG 0.416098 1_4:-2193306 None:intergenic
GTTAGGAAAGAAGTGTAGAT+TGG 0.416911 1_4:+2193208 Msa0143300:CDS
TGTGTTTGTGTCACTGATAT+TGG 0.418037 1_4:+2191706 Msa0143300:CDS
TCCGAGTAAGCGTATATTCA+TGG 0.424739 1_4:-2198872 None:intergenic
TAATTTCAATGGCTCTTCCT+TGG 0.425453 1_4:+2192672 Msa0143300:CDS
CTTTCCATACGCAGGGCCTT+GGG 0.432276 1_4:+2197521 Msa0143300:intron
AGATGTTATTTGCGGACAAT+TGG 0.433112 1_4:-2190982 None:intergenic
TTCTATAATCCTCCTTTGCA+TGG 0.438366 1_4:-2191051 None:intergenic
GATAAAACTGTAACTGATGC+TGG 0.438648 1_4:-2191359 None:intergenic
TGGTGAAGGAAAGGCTTTAG+TGG 0.445904 1_4:+2198633 Msa0143300:CDS
GGTACCGGTGGTATCACAAC+AGG 0.445991 1_4:-2191389 None:intergenic
AAATCATCATTTGTCATCCA+TGG 0.447737 1_4:-2195420 None:intergenic
CTGCATATGGGTGGCTGCAT+GGG 0.449484 1_4:+2191904 Msa0143300:CDS
TTGCCTTTGTGGTTTGCTGC+AGG 0.451776 1_4:+2189621 Msa0143300:CDS
GAAGAAATTGAATTTGGTTG+GGG 0.452274 1_4:+2193230 Msa0143300:CDS
TTTACTAGTGGTTCAGTTGA+AGG 0.458292 1_4:+2198678 Msa0143300:three_prime_UTR
GTCTTTAATGACGTCAATGC+AGG 0.458958 1_4:-2193284 None:intergenic
TGGTCTGTGATACTTCATTT+GGG 0.459634 1_4:+2191773 Msa0143300:CDS
ATTAATTTACTACCTCGTAA+AGG 0.461833 1_4:-2187107 None:intergenic
CTGCTTTATATTCAAGACTT+GGG 0.463614 1_4:-2191421 None:intergenic
CTTTGCTCAGCTATTTCTGA+TGG 0.463690 1_4:+2191814 Msa0143300:CDS
CCATTTACAACTGTCCTTGA+GGG 0.464316 1_4:-2192439 None:intergenic
AGATGCATAGCGACCAAGCC+TGG 0.464385 1_4:-2195887 None:intergenic
TTGCGTTGTTTCGATCGATC+TGG 0.464429 1_4:-2186597 None:intergenic
TTCACGTGCATGGCCAGGCT+TGG 0.465502 1_4:+2195874 Msa0143300:CDS
AAATATCAAGTGAACCAATA+GGG 0.471343 1_4:-2189817 None:intergenic
AGTATTGCAGATGTTATTTG+CGG 0.473450 1_4:-2190990 None:intergenic
CCATGGCAGATTTGAGCCTC+CGG 0.477171 1_4:+2191635 Msa0143300:intron
TGTGGAGAAATAACAGCAAA+TGG 0.478471 1_4:+2196378 Msa0143300:CDS
CTTTGAAGCAGTTCAGGAGG+TGG 0.479277 1_4:+2191148 Msa0143300:CDS
AATCATCATTTGTCATCCAT+GGG 0.483482 1_4:-2195419 None:intergenic
AATTCATACTTCTCTTGTAT+GGG 0.483939 1_4:-2191098 None:intergenic
TCAGGACAATCAGTTTCCTT+CGG 0.485615 1_4:+2191273 Msa0143300:CDS
GGCTGTCCTCTTCTTAACTC+AGG 0.486200 1_4:+2195492 Msa0143300:CDS
AGCTTCCACTGAGAAGGCCT+CGG 0.487850 1_4:-2186881 None:intergenic
GTTATTGGAGAAGTGCTCTC+TGG 0.489266 1_4:+2191295 Msa0143300:CDS
CGTCTACGAGTCCCTGGAGG+GGG 0.491552 1_4:-2198551 None:intergenic
TTATCGTAAAATGTGAGGAT+TGG 0.492119 1_4:+2187359 Msa0143300:CDS
ATTCCATTCCATTCCATCCA+TGG 0.492590 1_4:+2186662 Msa0143300:CDS
ATAATTTCACGTGCATGGCC+AGG 0.492640 1_4:+2195869 Msa0143300:CDS
TTCGTAACATAAGAAATTTG+AGG 0.493709 1_4:-2191473 None:intergenic
CAACCAGGTATGTCCCTCTC+AGG 0.494819 1_4:-2192636 None:intergenic
AGCATGCAGTTCTTCATGTA+AGG 0.494895 1_4:-2193183 None:intergenic
TAATTATTACCTGAAAATGA+AGG 0.495822 1_4:-2193391 None:intergenic
ACTGCTTTATATTCAAGACT+TGG 0.496374 1_4:-2191422 None:intergenic
ATAGTGACTTGCAACATCTC+AGG 0.496965 1_4:+2189846 Msa0143300:CDS
TGCTCAGCTATTTCTGATGG+TGG 0.499452 1_4:+2191817 Msa0143300:CDS
TAAGATTCTTAAGGAAGGAA+AGG 0.500351 1_4:-2191228 None:intergenic
CGAAGTTTCTTTGTAGCCCA+AGG 0.502818 1_4:-2197537 None:intergenic
CCCATGAATATACGCTTACT+CGG 0.503884 1_4:+2198871 Msa0143300:three_prime_UTR
CAAAGAATTTGGAGATGTAC+CGG 0.504794 1_4:-2191654 None:intergenic
TCTGCATATGGGTGGCTGCA+TGG 0.507578 1_4:+2191903 Msa0143300:CDS
ACCCTCATTTGACTGTTGAC+AGG 0.512484 1_4:+2187949 Msa0143300:CDS
AAGGATTATTGTTTCTAGCA+AGG 0.512864 1_4:-2193372 None:intergenic
TCTATAATCCTCCTTTGCAT+GGG 0.516021 1_4:-2191050 None:intergenic
TCGATCTGGCGCATGGATAC+CGG 0.517125 1_4:-2186583 None:intergenic
ATGCCTATTGTTTAGGAATG+TGG 0.521253 1_4:+2196360 Msa0143300:intron
AGGATTATTGTTTCTAGCAA+GGG 0.521348 1_4:-2193371 None:intergenic
GTTTCGATCGATCTGGCGCA+TGG 0.522288 1_4:-2186590 None:intergenic
TCATTAAAGACCATCAATGT+AGG 0.522914 1_4:+2193296 Msa0143300:CDS
TGAAACCTCCATGGATGGAA+TGG 0.522979 1_4:-2186670 None:intergenic
CTTGGTCGCTATGCATCTTG+AGG 0.526453 1_4:+2195892 Msa0143300:CDS
CTTGGGGTCTTCTCTGGTAC+CGG 0.528541 1_4:-2191404 None:intergenic
ACCATCAATGTAGGTTTAGG+TGG 0.530655 1_4:+2193305 Msa0143300:CDS
CATATCTCTAGAATGTAAAG+AGG 0.533522 1_4:-2191848 None:intergenic
CACCACTCTTTGTATTTCCG+AGG 0.534005 1_4:+2186864 Msa0143300:CDS
AATCTTCAAGCTCTGCATAT+GGG 0.534611 1_4:+2191892 Msa0143300:CDS
ATGATAATTAAATTGAATAC+CGG 0.534755 1_4:+2186564 Msa0143300:CDS
AACCTGTCAACAGTCAAATG+AGG 0.536573 1_4:-2187951 None:intergenic
CAGGCACTATATAATTTCAA+TGG 0.536668 1_4:+2192661 Msa0143300:CDS
TTCTTACATAAGAATTTAGG+TGG 0.539686 1_4:+2186493 Msa0143300:five_prime_UTR
CTAGAACAGTGGTGAAGGAA+AGG 0.542613 1_4:+2198624 Msa0143300:CDS
TGTTACGAAACTCACCTTGG+AGG 0.542704 1_4:+2191487 Msa0143300:CDS
CATTGAAATTATATAGTGCC+TGG 0.544010 1_4:-2192660 None:intergenic
AACAGATAATTTCACGTGCA+TGG 0.545210 1_4:+2195864 Msa0143300:CDS
TGCTTTATATTCAAGACTTG+GGG 0.545456 1_4:-2191420 None:intergenic
ATCGTCTACGAGTCCCTGGA+GGG 0.545605 1_4:-2198553 None:intergenic
GGTGGATAGTTAGTTTATGG+AGG 0.545727 1_4:+2186511 Msa0143300:five_prime_UTR
TAACAAACTTAATTCGATTG+TGG 0.547906 1_4:+2191753 Msa0143300:CDS
TATATAGTGCCTGGTCAACC+AGG 0.548488 1_4:-2192651 None:intergenic
CATTTACAACTGTCCTTGAG+GGG 0.549394 1_4:-2192438 None:intergenic
GAGAGTGAAACCTCCATGGA+TGG 0.550388 1_4:-2186675 None:intergenic
GTTACGAAACTCACCTTGGA+GGG 0.552444 1_4:+2191488 Msa0143300:CDS
ATTGCTTCGAAAATTGTCAC+TGG 0.552444 1_4:+2197678 Msa0143300:CDS
TCTCACTAGAACAGTGGTGA+AGG 0.553269 1_4:+2198619 Msa0143300:CDS
ATGCTGTTAATTGCTTCAGC+CGG 0.556977 1_4:+2191204 Msa0143300:CDS
AGGGACATACCTGGTTGACC+AGG 0.557140 1_4:+2192642 Msa0143300:CDS
ACCATTTACAACTGTCCTTG+AGG 0.557294 1_4:-2192440 None:intergenic
CCTCGTTTGCACCAACAGCT+CGG 0.558107 1_4:+2186716 Msa0143300:CDS
CAGATTCCAATTGACAGTGA+TGG 0.560531 1_4:-2187013 None:intergenic
TTCCAAAGCACTTAGAGAGA+AGG 0.567121 1_4:-2193261 None:intergenic
GATATATGTGATGCAATTGA+AGG 0.567593 1_4:+2197700 Msa0143300:CDS
GTCTGAGAGTGAAACCTCCA+TGG 0.569180 1_4:-2186679 None:intergenic
TCTTTGGCTTGAAAGTAACA+TGG 0.575310 1_4:+2188085 Msa0143300:CDS
TTATTTGCGGACAATTGGAA+AGG 0.576652 1_4:-2190977 None:intergenic
ACCTGAAGCTTCCACTGAGA+AGG 0.577463 1_4:-2186887 None:intergenic
GACATCAGTTCTTCCCTCCA+AGG 0.577580 1_4:-2191501 None:intergenic
CCTCCATGGATGGAATGGAA+TGG 0.578095 1_4:-2186665 None:intergenic
ACCGATCGTCTACGAGTCCC+TGG 0.579235 1_4:-2198557 None:intergenic
CCGAGTAAGCGTATATTCAT+GGG 0.581968 1_4:-2198871 None:intergenic
ATGGATGGAATGGAATGGAA+TGG 0.583519 1_4:-2186660 None:intergenic
TTCTTAAGGAAGGAAAGGAC+CGG 0.583884 1_4:-2191223 None:intergenic
TGAAGAATCTATGCCTGAGA+GGG 0.584891 1_4:+2192623 Msa0143300:CDS
CCGAGCTGTTGGTGCAAACG+AGG 0.587988 1_4:-2186716 None:intergenic
TAGAAACACTGGTGCTTGTG+TGG 0.590512 1_4:+2198585 Msa0143300:CDS
TGCAAAATCTAAGAAAGTTG+AGG 0.590585 1_4:+2195382 Msa0143300:CDS
TTATGTTACGAAACTCACCT+TGG 0.591743 1_4:+2191484 Msa0143300:CDS
TTGAAGAGTCTGAAAATCAG+AGG 0.592916 1_4:+2193101 Msa0143300:CDS
TCCAGGGACTCGTAGACGAT+CGG 0.595135 1_4:+2198556 Msa0143300:CDS
ACAACTCAGTGGTAACCTCA+AGG 0.595138 1_4:+2192401 Msa0143300:CDS
ATGCCTGAGAGGGACATACC+TGG 0.595563 1_4:+2192633 Msa0143300:CDS
GGGGAATTTGAAGCTTGACA+TGG 0.599635 1_4:-2195358 None:intergenic
TCCTAACCTGAGTTAAGAAG+AGG 0.599786 1_4:-2195498 None:intergenic
CATACCTGCATCATATCTAA+CGG 0.600693 1_4:+2191025 Msa0143300:CDS
TTGAAGAATCTATGCCTGAG+AGG 0.600725 1_4:+2192622 Msa0143300:CDS
GGATCCGTTAGATATGATGC+AGG 0.602978 1_4:-2191029 None:intergenic
TGGTATCACAACAGGGCTAG+AGG 0.605973 1_4:-2191381 None:intergenic
TCGAGTTACAGAATATTCAA+AGG 0.606067 1_4:+2189871 Msa0143300:CDS
ACCACTGAGTTGTCCCCACA+AGG 0.611919 1_4:-2192391 None:intergenic
GCTTGATGTGTCAGACACCA+AGG 0.612531 1_4:+2192699 Msa0143300:CDS
TGACACATCAAGCATTTCCA+AGG 0.613832 1_4:-2192689 None:intergenic
ATGCCTACAAAATTAAAGAA+CGG 0.613991 1_4:+2198841 Msa0143300:three_prime_UTR
GAGGAAATTAGCGTAGTTTG+GGG 0.614356 1_4:+2186530 Msa0143300:five_prime_UTR
TTAAGAATTTGCATAAACAC+AGG 0.614638 1_4:-2187036 None:intergenic
TCATGTAAGGAGGAAAAGCA+AGG 0.615273 1_4:-2193170 None:intergenic
ATTCCAATTGACAGTGATGG+AGG 0.615540 1_4:-2187010 None:intergenic
TAATTTACTACCTCGTAAAG+GGG 0.615660 1_4:-2187105 None:intergenic
CCAATTGACAGTGATGGAGG+CGG 0.615834 1_4:-2187007 None:intergenic
TGGTTCTTAACAGATTCATG+TGG 0.616006 1_4:+2189593 Msa0143300:intron
TATCTTTGAAGCAGTTCAGG+AGG 0.616607 1_4:+2191145 Msa0143300:CDS
TAATACTTGTAAGTTCATCA+AGG 0.617024 1_4:-2195307 None:intergenic
ACCTGTCAACAGTCAAATGA+GGG 0.617095 1_4:-2187950 None:intergenic
TGGATGATGATCCGAGCTGT+TGG 0.619189 1_4:-2186727 None:intergenic
CAGCTGGCTGAGGAAAGCCT+TGG 0.619317 1_4:+2189767 Msa0143300:CDS
GGCCTCGGAAATACAAAGAG+TGG 0.619732 1_4:-2186866 None:intergenic
TAACGGATCCCATGCAAAGG+AGG 0.620071 1_4:+2191042 Msa0143300:CDS
ATCGGTGCATGTAGAAACAC+TGG 0.621119 1_4:+2198574 Msa0143300:CDS
AGATATGCATTTGAATTCTG+TGG 0.624699 1_4:+2191864 Msa0143300:CDS
TACACTTATCGTAAAATGTG+AGG 0.624911 1_4:+2187354 Msa0143300:CDS
ATATGTGATGCAATTGAAGG+TGG 0.625068 1_4:+2197703 Msa0143300:CDS
ATCTAACGGATCCCATGCAA+AGG 0.625544 1_4:+2191039 Msa0143300:CDS
GTGCTCTGAAAATTGAACCA+AGG 0.626621 1_4:-2189784 None:intergenic
ATATCTCTAGAATGTAAAGA+GGG 0.628839 1_4:-2191847 None:intergenic
CCATTCCATTCCATCCATGG+AGG 0.632094 1_4:+2186665 Msa0143300:CDS
GATTTGAACACCATCCCTTG+AGG 0.634984 1_4:-2192416 None:intergenic
ATGCAGTTCTTCATGTAAGG+AGG 0.640640 1_4:-2193180 None:intergenic
AAGTCTTGAATATAAAGCAG+TGG 0.643072 1_4:+2191424 Msa0143300:CDS
TCGTCTACGAGTCCCTGGAG+GGG 0.644338 1_4:-2198552 None:intergenic
GTCTACGAGTCCCTGGAGGG+GGG 0.644425 1_4:-2198550 None:intergenic
GGCTTGAAAGAGTAACCCCA+TGG 0.644533 1_4:+2195403 Msa0143300:CDS
CGAAAATCTCACTAGAACAG+TGG 0.645693 1_4:+2198613 Msa0143300:CDS
TAGCCCTGTTGTGATACCAC+CGG 0.645971 1_4:+2191385 Msa0143300:CDS
AGGAAATTAGCGTAGTTTGG+GGG 0.646303 1_4:+2186531 Msa0143300:five_prime_UTR
GAAGCAGAAGACAACTGCAA+TGG 0.646503 1_4:+2188128 Msa0143300:CDS
TATTTCCGAGGCCTTCTCAG+TGG 0.647025 1_4:+2186876 Msa0143300:CDS
AAAGCACTTAGAGAGAAGGA+AGG 0.647316 1_4:-2193257 None:intergenic
GGGGTCTTCTCTGGTACCGG+TGG 0.648417 1_4:-2191401 None:intergenic
AGCACTTCTCCAATAACCGA+AGG 0.649851 1_4:-2191289 None:intergenic
GAGGGAAGAACTGATGTCAG+TGG 0.651083 1_4:+2191506 Msa0143300:CDS
CAACTCAGTGGTAACCTCAA+GGG 0.652097 1_4:+2192402 Msa0143300:CDS
ATGGTGTTCAAATCCCCTCA+AGG 0.652754 1_4:+2192425 Msa0143300:CDS
CTTCAAGCTCTGCATATGGG+TGG 0.656850 1_4:+2191895 Msa0143300:CDS
AGCTGTTGGTGCAAACGAGG+AGG 0.659131 1_4:-2186713 None:intergenic
GATCGTCTACGAGTCCCTGG+AGG 0.661205 1_4:-2198554 None:intergenic
AATTTACTACCTCGTAAAGG+GGG 0.664518 1_4:-2187104 None:intergenic
TCCTTGTGGGGACAACTCAG+TGG 0.667251 1_4:+2192390 Msa0143300:CDS
TCTAGATTCATGAAATGACA+AGG 0.670840 1_4:-2191450 None:intergenic
ACATGGAAAATTTGGAGACG+CGG 0.672233 1_4:+2188102 Msa0143300:CDS
ATCATCATTTGTCATCCATG+GGG 0.674002 1_4:-2195418 None:intergenic
TCAGTGGTAACCTCAAGGGA+TGG 0.674816 1_4:+2192406 Msa0143300:CDS
AGTGGTGAATGAGCCTGTTG+CGG 0.677929 1_4:-2186848 None:intergenic
TAAATCAGAAACGATGACAT+CGG 0.679192 1_4:-2186784 None:intergenic
TAATATCTGACATCATTGTG+AGG 0.696853 1_4:+2195271 Msa0143300:CDS
TTACCTGCAGCAAACCACAA+AGG 0.721235 1_4:-2189624 None:intergenic
AGAATTTGGAGATGTACCGG+AGG 0.726563 1_4:-2191651 None:intergenic
GTACCGGTGGTATCACAACA+GGG 0.763736 1_4:-2191388 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAGACTTAATTTTTTTT+AGG - chr1_4:2188671-2188690 None:intergenic 10.0%
!!! ATAGTTTTATTTATTTAAGT+GGG - chr1_4:2188701-2188720 None:intergenic 10.0%
!!! TATAGTTTTATTTATTTAAG+TGG - chr1_4:2188702-2188721 None:intergenic 10.0%
!! AATAAAAAAATTCAATTTGT+TGG - chr1_4:2190201-2190220 None:intergenic 10.0%
!!! ATTGAATTTTTTTATTAAGT+TGG + chr1_4:2190205-2190224 Msa0143300:intron 10.0%
!!! TTTTGTTGAAATTTTAATAT+TGG + chr1_4:2192805-2192824 Msa0143300:intron 10.0%
!! ATAATAATTCTACATAAATT+GGG - chr1_4:2197814-2197833 None:intergenic 10.0%
!! TATAATAATTCTACATAAAT+TGG - chr1_4:2197815-2197834 None:intergenic 10.0%
!!! GAAATTTTTATTAACTAAAA+TGG - chr1_4:2198124-2198143 None:intergenic 10.0%
!! ATGATAATTAAATTGAATAC+CGG + chr1_4:2186564-2186583 Msa0143300:CDS 15.0%
!! AATTAATTAGACTAGAATAA+AGG - chr1_4:2187169-2187188 None:intergenic 15.0%
!! AAGATTATAATATAGAACTA+TGG - chr1_4:2188469-2188488 None:intergenic 15.0%
!! TTAATAATAATATTGCTCTT+GGG - chr1_4:2188530-2188549 None:intergenic 15.0%
!!! TAGTTTTATTTATTTAAGTG+GGG - chr1_4:2188700-2188719 None:intergenic 15.0%
!! AAAAAAATAAAATGAAAGAG+AGG - chr1_4:2188972-2188991 None:intergenic 15.0%
!!! AAAGAAACTCTTTTTATTTT+AGG + chr1_4:2189744-2189763 Msa0143300:CDS 15.0%
!!! TACTTTTAAATTTTACTACT+TGG + chr1_4:2189894-2189913 Msa0143300:intron 15.0%
!! AAATAATGGTTAAATCAATT+TGG - chr1_4:2189926-2189945 None:intergenic 15.0%
!! GTTAATGAATATTTAATGAA+AGG - chr1_4:2190059-2190078 None:intergenic 15.0%
!! ATAATTATGTGTGTATATTT+AGG + chr1_4:2190082-2190101 Msa0143300:intron 15.0%
!! AAGAATTAAATTATTCCTAA+TGG - chr1_4:2190925-2190944 None:intergenic 15.0%
!! TTCTATTAAAAATTTATACG+AGG - chr1_4:2191994-2192013 None:intergenic 15.0%
!!! TCGTATAAATTTTTAATAGA+AGG + chr1_4:2191993-2192012 Msa0143300:intron 15.0%
!! TGAACAATAATTAATCTAAT+AGG - chr1_4:2192321-2192340 None:intergenic 15.0%
!! GAAATTATCATTAAATAAAG+GGG - chr1_4:2192474-2192493 None:intergenic 15.0%
!! GGAAATTATCATTAAATAAA+GGG - chr1_4:2192475-2192494 None:intergenic 15.0%
!! TGGAAATTATCATTAAATAA+AGG - chr1_4:2192476-2192495 None:intergenic 15.0%
!!! TCCCTTTTTTAAAAAAAAAT+GGG - chr1_4:2192504-2192523 None:intergenic 15.0%
!!! ATCCCTTTTTTAAAAAAAAA+TGG - chr1_4:2192505-2192524 None:intergenic 15.0%
!!! TATACTTTTAGTTAACATTA+TGG + chr1_4:2192922-2192941 Msa0143300:intron 15.0%
!! ACAAGTTAATAAAATTGAAA+GGG - chr1_4:2193026-2193045 None:intergenic 15.0%
!!! ACATTTTTGCATTTTTTTTT+TGG + chr1_4:2193672-2193691 Msa0143300:intron 15.0%
!!! CATTTTTGCATTTTTTTTTT+GGG + chr1_4:2193673-2193692 Msa0143300:intron 15.0%
!!! ATTTTTGCATTTTTTTTTTG+GGG + chr1_4:2193674-2193693 Msa0143300:intron 15.0%
!!! TATATTGTTTTGTAATTTGT+AGG + chr1_4:2194113-2194132 Msa0143300:intron 15.0%
!!! ATATTGTTTTGTAATTTGTA+GGG + chr1_4:2194114-2194133 Msa0143300:intron 15.0%
!! AAACTATAAGATAAACTATT+AGG - chr1_4:2194268-2194287 None:intergenic 15.0%
!!! GTTTATCTTATAGTTTTTTT+AGG + chr1_4:2194272-2194291 Msa0143300:intron 15.0%
!!! ATAGAATATAATTTTTCTAC+TGG + chr1_4:2196143-2196162 Msa0143300:intron 15.0%
!!! TAGAATATAATTTTTCTACT+GGG + chr1_4:2196144-2196163 Msa0143300:intron 15.0%
!!! AATAAGTTTATGTATTTTTC+AGG + chr1_4:2196486-2196505 Msa0143300:intron 15.0%
!!! ATTTTACAATTATAATGTGA+GGG - chr1_4:2196686-2196705 None:intergenic 15.0%
!! AAAATTTATGAAGAACTTAA+AGG + chr1_4:2196917-2196936 Msa0143300:intron 15.0%
!! AAATTTATGAAGAACTTAAA+GGG + chr1_4:2196918-2196937 Msa0143300:intron 15.0%
!!! TTTAAGTTTGACAAAAATAT+CGG - chr1_4:2196983-2197002 None:intergenic 15.0%
!! TCATTCTTACATAAGAATTT+AGG + chr1_4:2186490-2186509 Msa0143300:five_prime_UTR 20.0%
!! GAAAGGAAAAAAAAAAAAGA+TGG - chr1_4:2187539-2187558 None:intergenic 20.0%
!!! TTTTTTTTTCCTTTCACTTT+TGG + chr1_4:2187544-2187563 Msa0143300:intron 20.0%
!!! ATTATACAGCCATTTTAAAA+AGG - chr1_4:2187746-2187765 None:intergenic 20.0%
!! GTTAATAATAATATTGCTCT+TGG - chr1_4:2188531-2188550 None:intergenic 20.0%
!!! AGTTTTATTTATTTAAGTGG+GGG - chr1_4:2188699-2188718 None:intergenic 20.0%
!! TAAGTGATTATACAAATTGA+GGG - chr1_4:2188817-2188836 None:intergenic 20.0%
!! TTAAGTGATTATACAAATTG+AGG - chr1_4:2188818-2188837 None:intergenic 20.0%
!!! AAATTGCGTTTTTATTTTAC+TGG + chr1_4:2189059-2189078 Msa0143300:intron 20.0%
!!! AATTGCGTTTTTATTTTACT+GGG + chr1_4:2189060-2189079 Msa0143300:intron 20.0%
!!! CAAATTTTTCCATTAAATTC+TGG + chr1_4:2189485-2189504 Msa0143300:intron 20.0%
!!! ATTGCATAACCTTTTATTAT+TGG + chr1_4:2189573-2189592 Msa0143300:intron 20.0%
!! TGTTAAGAACCAATAATAAA+AGG - chr1_4:2189585-2189604 None:intergenic 20.0%
!! AATGAAAGGAAATTAATGAA+AGG - chr1_4:2190045-2190064 None:intergenic 20.0%
!!! ATTTGTTAAATTCATGTACA+AGG + chr1_4:2190346-2190365 Msa0143300:intron 20.0%
!!! TATTATTTCTTTTGATGAGA+GGG + chr1_4:2190500-2190519 Msa0143300:intron 20.0%
!!! TCTTATTTCACTTTTGTTAT+TGG + chr1_4:2190551-2190570 Msa0143300:intron 20.0%
!!! CTTATTTCACTTTTGTTATT+GGG + chr1_4:2190552-2190571 Msa0143300:intron 20.0%
!!! TTATTTCACTTTTGTTATTG+GGG + chr1_4:2190553-2190572 Msa0143300:intron 20.0%
!!! GACATTACTACATTTTATTT+AGG - chr1_4:2190667-2190686 None:intergenic 20.0%
!!! TTCAAAAAACTTTGATTTCT+TGG - chr1_4:2190771-2190790 None:intergenic 20.0%
!!! AGTTTTTTGAATGTATCTAT+TGG + chr1_4:2190780-2190799 Msa0143300:intron 20.0%
!!! TTTCTTTCTATTAGTTTGTT+TGG + chr1_4:2191936-2191955 Msa0143300:intron 20.0%
!! AGATGGTTTAAATAAAACAA+AGG + chr1_4:2192043-2192062 Msa0143300:intron 20.0%
!! ATTATTGTTCAAGCATAATA+AGG + chr1_4:2192330-2192349 Msa0143300:intron 20.0%
!! TTATTGTTCAAGCATAATAA+GGG + chr1_4:2192331-2192350 Msa0143300:intron 20.0%
!!! TCCCCATTTTTTTTTAAAAA+AGG + chr1_4:2192499-2192518 Msa0143300:intron 20.0%
!!! CCCTTTTTTAAAAAAAAATG+GGG - chr1_4:2192503-2192522 None:intergenic 20.0%
!!! CCCCATTTTTTTTTAAAAAA+GGG + chr1_4:2192500-2192519 Msa0143300:intron 20.0%
!!! CTTTTAATAGAAGATGTTAA+TGG + chr1_4:2192768-2192787 Msa0143300:intron 20.0%
!!! TAATATTGGTTAGAGTTTTA+AGG + chr1_4:2192819-2192838 Msa0143300:intron 20.0%
!! CACAAGTTAATAAAATTGAA+AGG - chr1_4:2193027-2193046 None:intergenic 20.0%
!!! GGTTGTAAAAATTTGTTAAA+AGG + chr1_4:2193122-2193141 Msa0143300:CDS 20.0%
!! TAATTATTACCTGAAAATGA+AGG - chr1_4:2193394-2193413 None:intergenic 20.0%
!!! TTTTTGCATTTTTTTTTTGG+GGG + chr1_4:2193675-2193694 Msa0143300:intron 20.0%
!!! GATTATTTTCTTTTTGTCAA+TGG - chr1_4:2193894-2193913 None:intergenic 20.0%
!! TAATTAGTTGTATCCAAATA+TGG - chr1_4:2194231-2194250 None:intergenic 20.0%
!!! GATGTAAATATCTCAAATTT+TGG - chr1_4:2194529-2194548 None:intergenic 20.0%
!! TTTATCACATTTCTAAACTT+TGG + chr1_4:2194942-2194961 Msa0143300:intron 20.0%
!!! TATTGTTAAATAGGTTGATT+GGG - chr1_4:2195014-2195033 None:intergenic 20.0%
!!! TCAAATTTTAAGTTATTCCT+TGG + chr1_4:2195144-2195163 Msa0143300:intron 20.0%
!! TTGCAATTAATTTAATTCCT+TGG + chr1_4:2195545-2195564 Msa0143300:intron 20.0%
!! TTATTGATATTCTGATCATA+TGG - chr1_4:2195617-2195636 None:intergenic 20.0%
!!! TAAATTTTCAGCATTTGATA+AGG - chr1_4:2195811-2195830 None:intergenic 20.0%
!!! TAATTTCATTAGTTTACAAG+GGG - chr1_4:2195940-2195959 None:intergenic 20.0%
!!! GTAATTTCATTAGTTTACAA+GGG - chr1_4:2195941-2195960 None:intergenic 20.0%
!! TCATGTTATAAACATGAATA+AGG - chr1_4:2195963-2195982 None:intergenic 20.0%
!!! AGAATATAATTTTTCTACTG+GGG + chr1_4:2196145-2196164 Msa0143300:intron 20.0%
!! AAACTTATTTGCAGAAAAAA+GGG - chr1_4:2196475-2196494 None:intergenic 20.0%
!! TAAACTTATTTGCAGAAAAA+AGG - chr1_4:2196476-2196495 None:intergenic 20.0%
!!! ATTTTACAATTCTAATGTGA+GGG - chr1_4:2196602-2196621 None:intergenic 20.0%
!! AAAATCTAAATCATGAATGA+TGG + chr1_4:2196617-2196636 Msa0143300:intron 20.0%
!!! GATTTTACAATTATAATGTG+AGG - chr1_4:2196687-2196706 None:intergenic 20.0%
!! AAAATCTAAATCATGAATGA+TGG + chr1_4:2196617-2196636 Msa0143300:intron 20.0%
!! TTAAGTTTGACAAAAATATC+GGG - chr1_4:2196982-2197001 None:intergenic 20.0%
!!! GATATTTTTGTCAAACTTAA+AGG + chr1_4:2196982-2197001 Msa0143300:intron 20.0%
!! ATTTCATTAGATGATTATGT+AGG + chr1_4:2197175-2197194 Msa0143300:intron 20.0%
!!! TATTTGTTAATTGTAGGTTA+AGG - chr1_4:2197229-2197248 None:intergenic 20.0%
! TTCTTACATAAGAATTTAGG+TGG + chr1_4:2186493-2186512 Msa0143300:five_prime_UTR 25.0%
! TTAAGAATTTGCATAAACAC+AGG - chr1_4:2187039-2187058 None:intergenic 25.0%
! TTAATTTACTACCTCGTAAA+GGG - chr1_4:2187109-2187128 None:intergenic 25.0%
! ATTAATTTACTACCTCGTAA+AGG - chr1_4:2187110-2187129 None:intergenic 25.0%
! TCTAGTCTAATTAATTCTCT+TGG + chr1_4:2187173-2187192 Msa0143300:intron 25.0%
! TTCATTCTTCACTTATGTAT+CGG + chr1_4:2187624-2187643 Msa0143300:intron 25.0%
!! TTTTCTTTCTGTTATAGATG+TGG + chr1_4:2187865-2187884 Msa0143300:intron 25.0%
! TTTCTTTCTGTTATAGATGT+GGG + chr1_4:2187866-2187885 Msa0143300:intron 25.0%
! GAAGATAACAGTAAGTTATA+TGG - chr1_4:2187921-2187940 None:intergenic 25.0%
! ACATGCAAAGTAAAATACAA+CGG - chr1_4:2188001-2188020 None:intergenic 25.0%
! TGAAAGTAACATGGAAAATT+TGG + chr1_4:2188094-2188113 Msa0143300:CDS 25.0%
! TATAAATAACACATCACTGA+TGG - chr1_4:2188340-2188359 None:intergenic 25.0%
!!! ATCAGTGATGTGTTATTTAT+AGG + chr1_4:2188339-2188358 Msa0143300:intron 25.0%
!!! GTTTTATTTATTTAAGTGGG+GGG - chr1_4:2188698-2188717 None:intergenic 25.0%
!!! ATTGCGTTTTTATTTTACTG+GGG + chr1_4:2189061-2189080 Msa0143300:intron 25.0%
! GTATAAATGACATGTTAAGT+TGG - chr1_4:2189547-2189566 None:intergenic 25.0%
! AAATATCAAGTGAACCAATA+GGG - chr1_4:2189820-2189839 None:intergenic 25.0%
! GCAAACAAGCATATAAATAA+TGG - chr1_4:2189940-2189959 None:intergenic 25.0%
!! TACTAATTGATAAGCTTTGA+AGG - chr1_4:2189974-2189993 None:intergenic 25.0%
!!! AATCAATTTTTTTTCCTCTC+TGG - chr1_4:2190018-2190037 None:intergenic 25.0%
! GTTTGTAGTATACCTAAATT+TGG + chr1_4:2190283-2190302 Msa0143300:intron 25.0%
! TTATCATGCATACCAAATTT+AGG - chr1_4:2190298-2190317 None:intergenic 25.0%
! TAATCATGTTAATGCTTCAT+TGG + chr1_4:2190315-2190334 Msa0143300:intron 25.0%
!! GATAGTATTTTCTGACATTA+TGG - chr1_4:2190480-2190499 None:intergenic 25.0%
!!! CTATTATTTCTTTTGATGAG+AGG + chr1_4:2190499-2190518 Msa0143300:intron 25.0%
! AATATAATACAAACACTGTG+AGG + chr1_4:2190528-2190547 Msa0143300:intron 25.0%
!!! CATTTTATTTAGGCAAAGAT+TGG - chr1_4:2190657-2190676 None:intergenic 25.0%
! GAACAGTTCTTTATTAATTC+TGG + chr1_4:2191071-2191090 Msa0143300:CDS 25.0%
! AATTCATACTTCTCTTGTAT+GGG - chr1_4:2191101-2191120 None:intergenic 25.0%
!!! AGGTTTCTAACATTTTTTGT+GGG - chr1_4:2191124-2191143 None:intergenic 25.0%
!!! AAGGTTTCTAACATTTTTTG+TGG - chr1_4:2191125-2191144 None:intergenic 25.0%
!! CAGCTTATCTTTTAAATATC+AGG + chr1_4:2191255-2191274 Msa0143300:CDS 25.0%
! TTCGTAACATAAGAAATTTG+AGG - chr1_4:2191476-2191495 None:intergenic 25.0%
! TGGATAATATGAAGAAATTG+TGG - chr1_4:2191618-2191637 None:intergenic 25.0%
! CAATTTCTTCATATTATCCA+TGG + chr1_4:2191618-2191637 Msa0143300:intron 25.0%
! ACACAATGAAACAAAGAATT+TGG - chr1_4:2191668-2191687 None:intergenic 25.0%
! AAACACATCCTTTAATATTC+AGG - chr1_4:2191693-2191712 None:intergenic 25.0%
! TAACAAACTTAATTCGATTG+TGG + chr1_4:2191753-2191772 Msa0143300:CDS 25.0%
!!! ATATCTCTAGAATGTAAAGA+GGG - chr1_4:2191850-2191869 None:intergenic 25.0%
! CAAAATGAATTTGTAAATCC+TGG + chr1_4:2191968-2191987 Msa0143300:intron 25.0%
! ATCTTTATGAAACATGAAGA+TGG - chr1_4:2192027-2192046 None:intergenic 25.0%
! ATCTTCATGTTTCATAAAGA+TGG + chr1_4:2192026-2192045 Msa0143300:intron 25.0%
! TCAATATACTACACAAAACT+AGG - chr1_4:2192096-2192115 None:intergenic 25.0%
! TCCATAGTATCAATATTTGA+AGG - chr1_4:2192209-2192228 None:intergenic 25.0%
! GAAAATTAAACCCAAAAAAC+TGG - chr1_4:2192251-2192270 None:intergenic 25.0%
! TTAAAAAAAAATGGGGAAGA+TGG - chr1_4:2192496-2192515 None:intergenic 25.0%
! TTGGAATGTTTGTTTACATT+CGG + chr1_4:2192850-2192869 Msa0143300:intron 25.0%
!!! GCATTAAGTTTTGTTATTCA+TGG + chr1_4:2193068-2193087 Msa0143300:CDS 25.0%
! AGATTGGAAGAAATTGAATT+TGG + chr1_4:2193224-2193243 Msa0143300:CDS 25.0%
!! AACAATAATCCTTCATTTTC+AGG + chr1_4:2193382-2193401 Msa0143300:CDS 25.0%
!! TTTCTCTAGTGTTTTCTATA+CGG - chr1_4:2193485-2193504 None:intergenic 25.0%
! TTGTATCTTAGAGTAAGTTA+GGG - chr1_4:2193638-2193657 None:intergenic 25.0%
! ATTGTATCTTAGAGTAAGTT+AGG - chr1_4:2193639-2193658 None:intergenic 25.0%
! GAATCTATGAATTCTGATAT+AGG + chr1_4:2193799-2193818 Msa0143300:intron 25.0%
! TGACAAAAAGAAAATAATCG+TGG + chr1_4:2193895-2193914 Msa0143300:intron 25.0%
!! ATTTTGCTAGGATTAAAAAG+TGG - chr1_4:2194052-2194071 None:intergenic 25.0%
!!! ATGTAGTTTTGTATTTTGCT+AGG - chr1_4:2194064-2194083 None:intergenic 25.0%
! GTTCTATCATAATCCATATT+TGG + chr1_4:2194215-2194234 Msa0143300:intron 25.0%
!! GAAATAATGATGGAACTTAA+TGG - chr1_4:2194639-2194658 None:intergenic 25.0%
! GAAAAGATTTAATGATGTCT+TGG - chr1_4:2194677-2194696 None:intergenic 25.0%
!!! TAAACTTTGGTTTGTTGTTA+TGG + chr1_4:2194955-2194974 Msa0143300:intron 25.0%
!!! GTATTGTTAAATAGGTTGAT+TGG - chr1_4:2195015-2195034 None:intergenic 25.0%
! CTTGACATGTATTGTTAAAT+AGG - chr1_4:2195023-2195042 None:intergenic 25.0%
! CTATTTAACAATACATGTCA+AGG + chr1_4:2195021-2195040 Msa0143300:intron 25.0%
! TAATACTTGTAAGTTCATCA+AGG - chr1_4:2195310-2195329 None:intergenic 25.0%
!! AACTTTCTTAGATTTTGCAT+GGG - chr1_4:2195381-2195400 None:intergenic 25.0%
! ATTATCAAAATGGCGTATAT+TGG - chr1_4:2195651-2195670 None:intergenic 25.0%
! GGACAAAACAATTATCAAAA+TGG - chr1_4:2195661-2195680 None:intergenic 25.0%
! AACAAAGAGAAAAAGTAACA+GGG + chr1_4:2195720-2195739 Msa0143300:intron 25.0%
!! AATTTCATTAGTTTACAAGG+GGG - chr1_4:2195939-2195958 None:intergenic 25.0%
!! GGTAATTTCATTAGTTTACA+AGG - chr1_4:2195942-2195961 None:intergenic 25.0%
! TAGTTTAGATTATGCATATG+TGG + chr1_4:2196246-2196265 Msa0143300:intron 25.0%
! AGTTTAGATTATGCATATGT+GGG + chr1_4:2196247-2196266 Msa0143300:intron 25.0%
! TAATGTGTTAATGAGATAGA+AGG + chr1_4:2196288-2196307 Msa0143300:intron 25.0%
! AATGTGTTAATGAGATAGAA+GGG + chr1_4:2196289-2196308 Msa0143300:intron 25.0%
!! GATTTTACAATTCTAATGTG+AGG - chr1_4:2196603-2196622 None:intergenic 25.0%
!!! TTTTCTAGTCAGATTCTTTT+GGG + chr1_4:2196756-2196775 Msa0143300:intron 25.0%
!! TATTTTGCCAAGAAACTTAA+AGG + chr1_4:2196951-2196970 Msa0143300:intron 25.0%
!! GCAACAATATCATATTTTCT+TGG - chr1_4:2197026-2197045 None:intergenic 25.0%
! TCTGTTGTGAATTTATTGAT+TGG + chr1_4:2197099-2197118 Msa0143300:intron 25.0%
! TTGATTCTCATGATCAAATA+AGG + chr1_4:2197201-2197220 Msa0143300:intron 25.0%
!!! AGCTCTTTTTTTTTTCTGAT+GGG - chr1_4:2197329-2197348 None:intergenic 25.0%
!!! AAGCTCTTTTTTTTTTCTGA+TGG - chr1_4:2197330-2197349 None:intergenic 25.0%
! CTTATGATTCAAAAATCAAG+AGG - chr1_4:2197387-2197406 None:intergenic 25.0%
! ATGAATTGTAATGATAATCC+TGG - chr1_4:2197496-2197515 None:intergenic 25.0%
! TTTGTAATCTGTGGTAAAAT+TGG + chr1_4:2197898-2197917 Msa0143300:intron 25.0%
! TTTAAACCTTTAGTTGAATC+AGG + chr1_4:2197978-2197997 Msa0143300:intron 25.0%
! TTAAACCTTTAGTTGAATCA+GGG + chr1_4:2197979-2197998 Msa0143300:intron 25.0%
! TTAAAAAAAATTGCGGAAGA+GGG - chr1_4:2198146-2198165 None:intergenic 25.0%
! ATTAAAAAAAATTGCGGAAG+AGG - chr1_4:2198147-2198166 None:intergenic 25.0%
! AGTAACATGTTAAATCAAGT+GGG + chr1_4:2198206-2198225 Msa0143300:intron 25.0%
!!! CGAAATTTTAACAATTTGCA+CGG + chr1_4:2198793-2198812 Msa0143300:three_prime_UTR 25.0%
! ATGCCTACAAAATTAAAGAA+CGG + chr1_4:2198841-2198860 Msa0143300:three_prime_UTR 25.0%
!!! ATTCCGTTCTTTAATTTTGT+AGG - chr1_4:2198847-2198866 None:intergenic 25.0%
! TTAGGTGGATAGTTAGTTTA+TGG + chr1_4:2186508-2186527 Msa0143300:five_prime_UTR 30.0%
ATCTCATTCTCTTCTTCAAT+TGG - chr1_4:2186750-2186769 None:intergenic 30.0%
TAAATCAGAAACGATGACAT+CGG - chr1_4:2186787-2186806 None:intergenic 30.0%
TAATTTACTACCTCGTAAAG+GGG - chr1_4:2187108-2187127 None:intergenic 30.0%
AAATCAGAACACTACGTTAA+TGG - chr1_4:2187231-2187250 None:intergenic 30.0%
!! CTGATTTTCACTTTTATCCA+AGG + chr1_4:2187244-2187263 Msa0143300:intron 30.0%
!! ACTTTGGAATTTAAACTCCT+TGG - chr1_4:2187264-2187283 None:intergenic 30.0%
TACACTTATCGTAAAATGTG+AGG + chr1_4:2187354-2187373 Msa0143300:CDS 30.0%
TTATCGTAAAATGTGAGGAT+TGG + chr1_4:2187359-2187378 Msa0143300:CDS 30.0%
GTATTTGCGTTAATGGAAAT+TGG - chr1_4:2187408-2187427 None:intergenic 30.0%
TCCATTAACGCAAATACAAA+TGG + chr1_4:2187411-2187430 Msa0143300:intron 30.0%
TCCATTTGTATTTGCGTTAA+TGG - chr1_4:2187415-2187434 None:intergenic 30.0%
ATTAACGCAAATACAAATGG+AGG + chr1_4:2187414-2187433 Msa0143300:intron 30.0%
TACATACAAAATTCCTTGCT+AGG - chr1_4:2187653-2187672 None:intergenic 30.0%
!! GAATTTCCGCCTTTTTAAAA+TGG + chr1_4:2187734-2187753 Msa0143300:intron 30.0%
!! ATACAGCCATTTTAAAAAGG+CGG - chr1_4:2187743-2187762 None:intergenic 30.0%
AGATGCAAGAGAATAAAAAG+GGG - chr1_4:2188272-2188291 None:intergenic 30.0%
GAGATGCAAGAGAATAAAAA+GGG - chr1_4:2188273-2188292 None:intergenic 30.0%
AGAGATGCAAGAGAATAAAA+AGG - chr1_4:2188274-2188293 None:intergenic 30.0%
TTGTGCTAAACTAGTATTTG+AGG - chr1_4:2188492-2188511 None:intergenic 30.0%
CATCAGATTTATGTCCAAAA+AGG - chr1_4:2188783-2188802 None:intergenic 30.0%
ATGCATTATGTTGTCATATG+TGG + chr1_4:2189138-2189157 Msa0143300:intron 30.0%
ATTATGTTGTCATATGTGGT+TGG + chr1_4:2189142-2189161 Msa0143300:intron 30.0%
CATTAGATGCAAAGTTTATG+AGG - chr1_4:2189205-2189224 None:intergenic 30.0%
CTCATAAACTTTGCATCTAA+TGG + chr1_4:2189203-2189222 Msa0143300:intron 30.0%
!! ACTTTGAAGTGGTATTAGAA+GGG - chr1_4:2189316-2189335 None:intergenic 30.0%
!! AACTTTGAAGTGGTATTAGA+AGG - chr1_4:2189317-2189336 None:intergenic 30.0%
! ATGAGTACAAAACTTTGAAG+TGG - chr1_4:2189327-2189346 None:intergenic 30.0%
TAAATACTTTGCAATGCTTC+AGG - chr1_4:2189670-2189689 None:intergenic 30.0%
TTACATCATCTAGGAATTTG+TGG - chr1_4:2189701-2189720 None:intergenic 30.0%
ACAAATTCCTAGATGATGTA+AGG + chr1_4:2189700-2189719 Msa0143300:intron 30.0%
AAAGTTACCTTACATCATCT+AGG - chr1_4:2189710-2189729 None:intergenic 30.0%
! AAGGTAACTTTTGTGTTAAC+AGG + chr1_4:2189719-2189738 Msa0143300:intron 30.0%
GAAATATCAAGTGAACCAAT+AGG - chr1_4:2189821-2189840 None:intergenic 30.0%
! ATTGGTTCACTTGATATTTC+TGG + chr1_4:2189821-2189840 Msa0143300:CDS 30.0%
TTGGTTCACTTGATATTTCT+GGG + chr1_4:2189822-2189841 Msa0143300:CDS 30.0%
TCGAGTTACAGAATATTCAA+AGG + chr1_4:2189871-2189890 Msa0143300:CDS 30.0%
TAGGTATACTACAAACTCAT+AGG - chr1_4:2190279-2190298 None:intergenic 30.0%
AAGAGATCCAAAAAAACCTA+TGG + chr1_4:2190687-2190706 Msa0143300:intron 30.0%
AGAGATCCAAAAAAACCTAT+GGG + chr1_4:2190688-2190707 Msa0143300:intron 30.0%
!!! TTATCACCCATAGGTTTTTT+TGG - chr1_4:2190697-2190716 None:intergenic 30.0%
AAAAAAACCTATGGGTGATA+AGG + chr1_4:2190696-2190715 Msa0143300:intron 30.0%
ATAAAAACCTTATCACCCAT+AGG - chr1_4:2190706-2190725 None:intergenic 30.0%
! CTGTTTAACTTTCATGTCTT+TGG + chr1_4:2190736-2190755 Msa0143300:intron 30.0%
TATCAAAACCAAAAACCAGA+AGG - chr1_4:2190807-2190826 None:intergenic 30.0%
! AGTATTGCAGATGTTATTTG+CGG - chr1_4:2190993-2191012 None:intergenic 30.0%
GAATTCATACTTCTCTTGTA+TGG - chr1_4:2191102-2191121 None:intergenic 30.0%
TAAGATTCTTAAGGAAGGAA+AGG - chr1_4:2191231-2191250 None:intergenic 30.0%
!!! GCTTTTAAGATTCTTAAGGA+AGG - chr1_4:2191236-2191255 None:intergenic 30.0%
!!! AGCTGCTTTTAAGATTCTTA+AGG - chr1_4:2191240-2191259 None:intergenic 30.0%
TGCTTTATATTCAAGACTTG+GGG - chr1_4:2191423-2191442 None:intergenic 30.0%
CTGCTTTATATTCAAGACTT+GGG - chr1_4:2191424-2191443 None:intergenic 30.0%
ACTGCTTTATATTCAAGACT+TGG - chr1_4:2191425-2191444 None:intergenic 30.0%
AAGTCTTGAATATAAAGCAG+TGG + chr1_4:2191424-2191443 Msa0143300:CDS 30.0%
TTGTGTCACCTGAATATTAA+AGG + chr1_4:2191682-2191701 Msa0143300:CDS 30.0%
!! CATATCTCTAGAATGTAAAG+AGG - chr1_4:2191851-2191870 None:intergenic 30.0%
AGATATGCATTTGAATTCTG+TGG + chr1_4:2191864-2191883 Msa0143300:CDS 30.0%
TTAAAAATTTATACGAGGCC+AGG - chr1_4:2191989-2192008 None:intergenic 30.0%
GCCTTCAAATATTGATACTA+TGG + chr1_4:2192205-2192224 Msa0143300:intron 30.0%
!!! AGTTCTAATCACCAGTTTTT+TGG + chr1_4:2192237-2192256 Msa0143300:intron 30.0%
!!! GTTCTAATCACCAGTTTTTT+GGG + chr1_4:2192238-2192257 Msa0143300:intron 30.0%
TGATAAATTAGTTGCTTCAC+AGG + chr1_4:2192553-2192572 Msa0143300:intron 30.0%
CATTGAAATTATATAGTGCC+TGG - chr1_4:2192663-2192682 None:intergenic 30.0%
CAGGCACTATATAATTTCAA+TGG + chr1_4:2192661-2192680 Msa0143300:CDS 30.0%
ACAAATATGACAACAAACCT+TGG - chr1_4:2192719-2192738 None:intergenic 30.0%
GTTGTCATATTTGTGAAGTT+TGG + chr1_4:2192725-2192744 Msa0143300:intron 30.0%
AATGTTTGTTTACATTCGGT+TGG + chr1_4:2192854-2192873 Msa0143300:intron 30.0%
AGGTTATAGATGAAGAAAGA+AGG + chr1_4:2192885-2192904 Msa0143300:intron 30.0%
GGTTATAGATGAAGAAAGAA+GGG + chr1_4:2192886-2192905 Msa0143300:intron 30.0%
CATTATGGTTTGACATAATG+AGG + chr1_4:2192937-2192956 Msa0143300:intron 30.0%
! ATGCATTTTCAAAGTGCAAT+AGG + chr1_4:2192979-2192998 Msa0143300:intron 30.0%
! ATTTTCAGACTCTTCAAACT+TGG - chr1_4:2193098-2193117 None:intergenic 30.0%
TGGAAGAAATTGAATTTGGT+TGG + chr1_4:2193228-2193247 Msa0143300:CDS 30.0%
GGAAGAAATTGAATTTGGTT+GGG + chr1_4:2193229-2193248 Msa0143300:CDS 30.0%
GAAGAAATTGAATTTGGTTG+GGG + chr1_4:2193230-2193249 Msa0143300:CDS 30.0%
TCATTAAAGACCATCAATGT+AGG + chr1_4:2193296-2193315 Msa0143300:CDS 30.0%
!! AGGATTATTGTTTCTAGCAA+GGG - chr1_4:2193374-2193393 None:intergenic 30.0%
!! AAGGATTATTGTTTCTAGCA+AGG - chr1_4:2193375-2193394 None:intergenic 30.0%
GGTAATAATTATTTCCCATG+TGG + chr1_4:2193403-2193422 Msa0143300:intron 30.0%
TAATTATTTCCCATGTGGAT+TGG + chr1_4:2193408-2193427 Msa0143300:intron 30.0%
AACACTAGAGAAACTCTTAT+TGG + chr1_4:2193492-2193511 Msa0143300:intron 30.0%
!! AGAAACTCTTATTGGTCTTT+AGG + chr1_4:2193500-2193519 Msa0143300:intron 30.0%
ATGAATTCTGATATAGGTTG+TGG + chr1_4:2193805-2193824 Msa0143300:intron 30.0%
!! CTTCATGTTCTCTTTTTAGT+TGG - chr1_4:2193847-2193866 None:intergenic 30.0%
TATAATAGTCCTAAGACCAT+CGG + chr1_4:2193933-2193952 Msa0143300:intron 30.0%
!!! AACACTTTTGGAACAAGTTA+TGG + chr1_4:2193970-2193989 Msa0143300:intron 30.0%
!!! ATGTTTTTAGTCCCTAAAGA+GGG + chr1_4:2194082-2194101 Msa0143300:intron 30.0%
TGTTGTTGTACCTACTTTAT+CGG - chr1_4:2194141-2194160 None:intergenic 30.0%
TAAAGTAGGTACAACAACAA+AGG + chr1_4:2194142-2194161 Msa0143300:intron 30.0%
AAAATAGGCTTAGGAAGTTT+GGG - chr1_4:2194354-2194373 None:intergenic 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG - chr1_4:2194369-2194388 None:intergenic 30.0%
! ATTCCAGTCAATTATTTTCC+CGG + chr1_4:2194590-2194609 Msa0143300:intron 30.0%
TCCATCATTATTTCCTTCTT+TGG + chr1_4:2194645-2194664 Msa0143300:intron 30.0%
CCATCATTATTTCCTTCTTT+GGG + chr1_4:2194646-2194665 Msa0143300:intron 30.0%
TCTTGTTAAATAGGACGATT+GGG - chr1_4:2194763-2194782 None:intergenic 30.0%
!! CTTGACTTGTCTTGTTAAAT+AGG - chr1_4:2194772-2194791 None:intergenic 30.0%
CTATTTAACAAGACAAGTCA+AGG + chr1_4:2194770-2194789 Msa0143300:intron 30.0%
!! TTGTTGTTATGGTTTTCTAC+AGG + chr1_4:2194966-2194985 Msa0143300:intron 30.0%
!! TAGAAGTATAAGCATTGACA+TGG - chr1_4:2195064-2195083 None:intergenic 30.0%
!! GTTGCTTATCTTTGTTGTTA+CGG + chr1_4:2195237-2195256 Msa0143300:intron 30.0%
TAATATCTGACATCATTGTG+AGG + chr1_4:2195271-2195290 Msa0143300:CDS 30.0%
!! TTAGCTATGTGCTATTGTTT+TGG + chr1_4:2195327-2195346 Msa0143300:CDS 30.0%
! ACTTTCTTAGATTTTGCATG+GGG - chr1_4:2195380-2195399 None:intergenic 30.0%
! CAACTTTCTTAGATTTTGCA+TGG - chr1_4:2195382-2195401 None:intergenic 30.0%
TGCAAAATCTAAGAAAGTTG+AGG + chr1_4:2195382-2195401 Msa0143300:CDS 30.0%
AATCATCATTTGTCATCCAT+GGG - chr1_4:2195422-2195441 None:intergenic 30.0%
AAATCATCATTTGTCATCCA+TGG - chr1_4:2195423-2195442 None:intergenic 30.0%
ATGGATGACAAATGATGATT+TGG + chr1_4:2195422-2195441 Msa0143300:CDS 30.0%
GTCTCAAAACTGTAGAAATT+TGG + chr1_4:2195452-2195471 Msa0143300:CDS 30.0%
GTTACACTTAATCAAATTGC+AGG - chr1_4:2195591-2195610 None:intergenic 30.0%
TGATATTCTGATCATATGGA+AGG - chr1_4:2195613-2195632 None:intergenic 30.0%
CAACAAAGAGAAAAAGTAAC+AGG + chr1_4:2195719-2195738 Msa0143300:intron 30.0%
ACAAAGAGAAAAAGTAACAG+GGG + chr1_4:2195721-2195740 Msa0143300:intron 30.0%
! ATTTTCAGCATTTGATAAGG+TGG - chr1_4:2195808-2195827 None:intergenic 30.0%
! ATTTCATTAGTTTACAAGGG+GGG - chr1_4:2195938-2195957 None:intergenic 30.0%
! ATATAATTTTTCTACTGGGG+AGG + chr1_4:2196148-2196167 Msa0143300:intron 30.0%
! TATAATTTTTCTACTGGGGA+GGG + chr1_4:2196149-2196168 Msa0143300:intron 30.0%
AACTGAATAGCCATTATTCA+CGG - chr1_4:2196194-2196213 None:intergenic 30.0%
AACATTGATGCCTATTGTTT+AGG + chr1_4:2196353-2196372 Msa0143300:intron 30.0%
!!! GTTCAACAAGTTTTTGAGTT+TGG + chr1_4:2196508-2196527 Msa0143300:intron 30.0%
AAATCATGAATGATGGTCAA+TGG + chr1_4:2196624-2196643 Msa0143300:intron 30.0%
!! GTTTTCTAGTCAGATTCTTT+TGG + chr1_4:2196755-2196774 Msa0143300:intron 30.0%
ATGCTAATCTAAACAATCAC+TGG - chr1_4:2196826-2196845 None:intergenic 30.0%
! GACAGCTATTTGTTAATTGT+AGG - chr1_4:2197235-2197254 None:intergenic 30.0%
AGCTGTCATTCTTCTATATT+TGG + chr1_4:2197248-2197267 Msa0143300:intron 30.0%
!!! TTTTTTTTTTCTGATGGGTG+GGG - chr1_4:2197324-2197343 None:intergenic 30.0%
!!! CTTTTTTTTTTCTGATGGGT+GGG - chr1_4:2197325-2197344 None:intergenic 30.0%
!!! TCTTTTTTTTTTCTGATGGG+TGG - chr1_4:2197326-2197345 None:intergenic 30.0%
GATATATGTGATGCAATTGA+AGG + chr1_4:2197700-2197719 Msa0143300:CDS 30.0%
TGACATTCCAAATGTAAGTT+AGG + chr1_4:2197729-2197748 Msa0143300:intron 30.0%
GACATTCCAAATGTAAGTTA+GGG + chr1_4:2197730-2197749 Msa0143300:intron 30.0%
ATGTAAAAGCAAAGGAAAGA+GGG - chr1_4:2197864-2197883 None:intergenic 30.0%
TAAACATTAGCACATCTTCT+AGG + chr1_4:2197933-2197952 Msa0143300:intron 30.0%
TAAACATCTCTTACATTCCA+TGG - chr1_4:2197962-2197981 None:intergenic 30.0%
TAAACCTTTAGTTGAATCAG+GGG + chr1_4:2197980-2197999 Msa0143300:intron 30.0%
TTTCCTCCTCCAAAATATAT+CGG + chr1_4:2198180-2198199 Msa0143300:intron 30.0%
GAGTAACATGTTAAATCAAG+TGG + chr1_4:2198205-2198224 Msa0143300:intron 30.0%
GTAACATGTTAAATCAAGTG+GGG + chr1_4:2198207-2198226 Msa0143300:intron 30.0%
TTATCAGTACATCTTCAACA+AGG - chr1_4:2198279-2198298 None:intergenic 30.0%
!! GGTACTCAAAAAGTATCTAT+CGG - chr1_4:2198480-2198499 None:intergenic 30.0%
!! TTTGCATTTTGCTATCTTCA+AGG - chr1_4:2198501-2198520 None:intergenic 30.0%
!!! AGAAGAATTGGTTTTACTAG+TGG + chr1_4:2198666-2198685 Msa0143300:three_prime_UTR 30.0%
GCATATATATCGCTGTTCTT+TGG + chr1_4:2187059-2187078 Msa0143300:CDS 35.0%
AATTTACTACCTCGTAAAGG+GGG - chr1_4:2187107-2187126 None:intergenic 35.0%
!! GACGCATATAGTTCTAACTT+TGG - chr1_4:2187280-2187299 None:intergenic 35.0%
!!! TCTTAGGGAGCACTTTATTT+TGG + chr1_4:2187325-2187344 Msa0143300:intron 35.0%
TGCGTTAATGGAAATTGGTT+GGG - chr1_4:2187403-2187422 None:intergenic 35.0%
TTGCGTTAATGGAAATTGGT+TGG - chr1_4:2187404-2187423 None:intergenic 35.0%
TGGAGGATTTCATCCAAATT+TGG + chr1_4:2187431-2187450 Msa0143300:intron 35.0%
TGGAGGCAAATTTCCAAATT+TGG - chr1_4:2187447-2187466 None:intergenic 35.0%
CTATTGTAGCCAAAAGTGAA+AGG - chr1_4:2187556-2187575 None:intergenic 35.0%
AAGGCGGAAATTCATAACTA+AGG - chr1_4:2187727-2187746 None:intergenic 35.0%
!!! GCAAAGCAGAGCAATTTTTT+TGG + chr1_4:2187888-2187907 Msa0143300:CDS 35.0%
!! TCTTTGGCTTGAAAGTAACA+TGG + chr1_4:2188085-2188104 Msa0143300:CDS 35.0%
TTGCGTAGAAAGGATATACA+GGG + chr1_4:2188223-2188242 Msa0143300:intron 35.0%
AGAATAAAAAGGGGCTTCAT+AGG - chr1_4:2188263-2188282 None:intergenic 35.0%
! TGTTACTCTTCGAAAGCATA+TGG + chr1_4:2188365-2188384 Msa0143300:intron 35.0%
CTGTCAGACAGTTGAATATT+AGG - chr1_4:2188586-2188605 None:intergenic 35.0%
!!! TTTTTTAGGCCCATAGCTTT+TGG - chr1_4:2188657-2188676 None:intergenic 35.0%
TATTTATTTAAGTGGGGGGT+GGG - chr1_4:2188694-2188713 None:intergenic 35.0%
TTATTTATTTAAGTGGGGGG+TGG - chr1_4:2188695-2188714 None:intergenic 35.0%
! TAGACTCAAGTTCTCCTTTT+TGG + chr1_4:2188766-2188785 Msa0143300:intron 35.0%
GTGATTATACAAATTGAGGG+TGG - chr1_4:2188814-2188833 None:intergenic 35.0%
! ATTTACCTAACAGTGTCGTT+TGG - chr1_4:2188945-2188964 None:intergenic 35.0%
!!! CTCGGCTCTCTTTTTAAAAT+AGG - chr1_4:2189087-2189106 None:intergenic 35.0%
TTGTCATATGTGGTTGGATA+TGG + chr1_4:2189148-2189167 Msa0143300:intron 35.0%
TAGAAAACTTGCCATCAATG+AGG - chr1_4:2189517-2189536 None:intergenic 35.0%
TGGTTCTTAACAGATTCATG+TGG + chr1_4:2189593-2189612 Msa0143300:intron 35.0%
!!! CTCTTTTTATTTTAGGCAGC+TGG + chr1_4:2189751-2189770 Msa0143300:CDS 35.0%
ATATGCTTGTTTGCTTGACA+AGG + chr1_4:2189946-2189965 Msa0143300:intron 35.0%
TGTACAAGGAAGTTATTACG+TGG + chr1_4:2190360-2190379 Msa0143300:intron 35.0%
AACTGACATCCCAAATATGT+TGG - chr1_4:2190610-2190629 None:intergenic 35.0%
AATGTATCTATTGGTCCTTC+TGG + chr1_4:2190789-2190808 Msa0143300:intron 35.0%
TGCTATTCAAGCACATCATT+TGG + chr1_4:2190836-2190855 Msa0143300:intron 35.0%
CAGACAAATGAAAGACAAGT+TGG - chr1_4:2190884-2190903 None:intergenic 35.0%
GTAGATTGTGATTGTCCATT+AGG + chr1_4:2190907-2190926 Msa0143300:intron 35.0%
! GTCTATTTTCTGCATGCAAT+GGG - chr1_4:2190958-2190977 None:intergenic 35.0%
TTATTTGCGGACAATTGGAA+AGG - chr1_4:2190980-2190999 None:intergenic 35.0%
! AGATGTTATTTGCGGACAAT+TGG - chr1_4:2190985-2191004 None:intergenic 35.0%
CATACCTGCATCATATCTAA+CGG + chr1_4:2191025-2191044 Msa0143300:CDS 35.0%
TCTATAATCCTCCTTTGCAT+GGG - chr1_4:2191053-2191072 None:intergenic 35.0%
TTCTATAATCCTCCTTTGCA+TGG - chr1_4:2191054-2191073 None:intergenic 35.0%
CTGAACTGCTTCAAAGATAA+AGG - chr1_4:2191144-2191163 None:intergenic 35.0%
!! CTTTATCTTTGAAGCAGTTC+AGG + chr1_4:2191142-2191161 Msa0143300:CDS 35.0%
AATCAGTTTCCTTCGGTTAT+TGG + chr1_4:2191280-2191299 Msa0143300:CDS 35.0%
GATAAAACTGTAACTGATGC+TGG - chr1_4:2191362-2191381 None:intergenic 35.0%
TTATGTTACGAAACTCACCT+TGG + chr1_4:2191484-2191503 Msa0143300:CDS 35.0%
CAAAGAATTTGGAGATGTAC+CGG - chr1_4:2191657-2191676 None:intergenic 35.0%
! TGTGTTTGTGTCACTGATAT+TGG + chr1_4:2191706-2191725 Msa0143300:CDS 35.0%
TGGTCTGTGATACTTCATTT+GGG + chr1_4:2191773-2191792 Msa0143300:CDS 35.0%
TAATCTTCAAGCTCTGCATA+TGG + chr1_4:2191891-2191910 Msa0143300:CDS 35.0%
AATCTTCAAGCTCTGCATAT+GGG + chr1_4:2191892-2191911 Msa0143300:CDS 35.0%
AAAGGAGTGATACATGAAGA+TGG + chr1_4:2192061-2192080 Msa0143300:intron 35.0%
AGTGATACATGAAGATGGTT+TGG + chr1_4:2192066-2192085 Msa0143300:intron 35.0%
! ATATGATGCTACTGTTGCTT+TGG + chr1_4:2192153-2192172 Msa0143300:intron 35.0%
AAAACTTTCTCTCACTCTTG+AGG + chr1_4:2192271-2192290 Msa0143300:intron 35.0%
AAGGGACCAAGTTATTCTTT+AGG + chr1_4:2192349-2192368 Msa0143300:intron 35.0%
AGGGACCAAGTTATTCTTTA+GGG + chr1_4:2192350-2192369 Msa0143300:intron 35.0%
CTAGACCCTAAAGAATAACT+TGG - chr1_4:2192358-2192377 None:intergenic 35.0%
TAATTTCAATGGCTCTTCCT+TGG + chr1_4:2192672-2192691 Msa0143300:CDS 35.0%
!!! TGGTTAGAGTTTTAAGGAAG+TGG + chr1_4:2192825-2192844 Msa0143300:intron 35.0%
!!! GGTTAGAGTTTTAAGGAAGT+GGG + chr1_4:2192826-2192845 Msa0143300:intron 35.0%
!!! GTTAGAGTTTTAAGGAAGTG+GGG + chr1_4:2192827-2192846 Msa0143300:intron 35.0%
ACATTCGGTTGGAAGTTATA+AGG + chr1_4:2192865-2192884 Msa0143300:intron 35.0%
TTGAAGAGTCTGAAAATCAG+AGG + chr1_4:2193101-2193120 Msa0143300:CDS 35.0%
! GTTAGGAAAGAAGTGTAGAT+TGG + chr1_4:2193208-2193227 Msa0143300:CDS 35.0%
AAGACCATCAATGTAGGTTT+AGG + chr1_4:2193302-2193321 Msa0143300:CDS 35.0%
!! CTTTAGGTACTGACAATAGA+AGG + chr1_4:2193516-2193535 Msa0143300:intron 35.0%
! TAGTGACGTGAGTGATATTT+TGG + chr1_4:2193576-2193595 Msa0143300:intron 35.0%
TTGTCAATGGCCATGAATTT+AGG - chr1_4:2193881-2193900 None:intergenic 35.0%
! AGTTGGCAGTAAAACACTTT+TGG + chr1_4:2193958-2193977 Msa0143300:intron 35.0%
!!! CATGTTTTTAGTCCCTAAAG+AGG + chr1_4:2194081-2194100 Msa0143300:intron 35.0%
ATACTTAGAGTCCCTCTTTA+GGG - chr1_4:2194096-2194115 None:intergenic 35.0%
TATACTTAGAGTCCCTCTTT+AGG - chr1_4:2194097-2194116 None:intergenic 35.0%
GAAAATAGGCTTAGGAAGTT+TGG - chr1_4:2194355-2194374 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG + chr1_4:2194373-2194392 Msa0143300:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - chr1_4:2194377-2194396 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGA+TGG - chr1_4:2194380-2194399 None:intergenic 35.0%
ACAGCATTAGAAAGAGAGTT+GGG - chr1_4:2194405-2194424 None:intergenic 35.0%
GATGTGTAGTAAGACTAGAT+GGG - chr1_4:2194442-2194461 None:intergenic 35.0%
AGAGATGATGAATGTTGTGT+TGG - chr1_4:2194464-2194483 None:intergenic 35.0%
GCTTACTTTATTCTCGTGTT+GGG + chr1_4:2194489-2194508 Msa0143300:intron 35.0%
TTTATTCTCGTGTTGGGTAT+AGG + chr1_4:2194495-2194514 Msa0143300:intron 35.0%
TTATTCTCGTGTTGGGTATA+GGG + chr1_4:2194496-2194515 Msa0143300:intron 35.0%
TTTCCGGGAAAATAATTGAC+TGG - chr1_4:2194596-2194615 None:intergenic 35.0%
!! AACTTAATGGATTGCAGATG+AGG - chr1_4:2194626-2194645 None:intergenic 35.0%
CCCAAAGAAGGAAATAATGA+TGG - chr1_4:2194649-2194668 None:intergenic 35.0%
CGATTGGGAAAATTCAAAAC+TGG - chr1_4:2194748-2194767 None:intergenic 35.0%
! GTCTTGTTAAATAGGACGAT+TGG - chr1_4:2194764-2194783 None:intergenic 35.0%
AGCATACATCTCATATGCAT+AGG - chr1_4:2194846-2194865 None:intergenic 35.0%
CAATGATGTCAGATATTACC+TGG - chr1_4:2195269-2195288 None:intergenic 35.0%
ATCATCATTTGTCATCCATG+GGG - chr1_4:2195421-2195440 None:intergenic 35.0%
TCAGGTTAGGATCAAATAGT+TGG + chr1_4:2195510-2195529 Msa0143300:intron 35.0%
TGATTACAAAGTCATGTCCA+AGG - chr1_4:2195565-2195584 None:intergenic 35.0%
ATCAAAATGGCGTATATTGG+CGG - chr1_4:2195648-2195667 None:intergenic 35.0%
CAAAGAGAAAAAGTAACAGG+GGG + chr1_4:2195722-2195741 Msa0143300:intron 35.0%
AACAGATAATTTCACGTGCA+TGG + chr1_4:2195864-2195883 Msa0143300:CDS 35.0%
TCATTTATAGTCATACCGAG+AGG + chr1_4:2196007-2196026 Msa0143300:intron 35.0%
TTGAGGTAAACAACACACTA+AGG - chr1_4:2196061-2196080 None:intergenic 35.0%
!! TAGTGTGTTGTTTACCTCAA+AGG + chr1_4:2196061-2196080 Msa0143300:intron 35.0%
TTAATGAGATAGAAGGGTCA+TGG + chr1_4:2196295-2196314 Msa0143300:intron 35.0%
ATGCCTATTGTTTAGGAATG+TGG + chr1_4:2196360-2196379 Msa0143300:intron 35.0%
TCTCCACATTCCTAAACAAT+AGG - chr1_4:2196366-2196385 None:intergenic 35.0%
TGTGGAGAAATAACAGCAAA+TGG + chr1_4:2196378-2196397 Msa0143300:CDS 35.0%
AAATCATGAATGATGGTCAG+TGG + chr1_4:2196708-2196727 Msa0143300:intron 35.0%
! TCTTGGCAAAATAGCTCTTT+TGG - chr1_4:2196944-2196963 None:intergenic 35.0%
! GGTTAGTCCTTTAAGTTTCT+TGG - chr1_4:2196961-2196980 None:intergenic 35.0%
CAAACTTAAAGGACCAAAAG+AGG + chr1_4:2196993-2197012 Msa0143300:intron 35.0%
! TCTTGGCAAAATACCTCTTT+TGG - chr1_4:2197009-2197028 None:intergenic 35.0%
! TTAGTATTTTCTCCTTTGCC+AGG + chr1_4:2197475-2197494 Msa0143300:intron 35.0%
TGTAATGATAATCCTGGCAA+AGG - chr1_4:2197490-2197509 None:intergenic 35.0%
! AGTGACAATTTTCGAAGCAA+TGG - chr1_4:2197679-2197698 None:intergenic 35.0%
ATTGCTTCGAAAATTGTCAC+TGG + chr1_4:2197678-2197697 Msa0143300:CDS 35.0%
ATATGTGATGCAATTGAAGG+TGG + chr1_4:2197703-2197722 Msa0143300:CDS 35.0%
AAATTGGGATGACAACTCAA+AGG - chr1_4:2197799-2197818 None:intergenic 35.0%
GATGTAAAAGCAAAGGAAAG+AGG - chr1_4:2197865-2197884 None:intergenic 35.0%
GATTACAAACATGTCACGAT+CGG - chr1_4:2197887-2197906 None:intergenic 35.0%
! CATTTTACAACCATCTCTGA+GGG - chr1_4:2198091-2198110 None:intergenic 35.0%
CTCAGAGATGGTTGTAAAAT+GGG + chr1_4:2198090-2198109 Msa0143300:intron 35.0%
TTCCTCCTCCAAAATATATC+GGG + chr1_4:2198181-2198200 Msa0143300:intron 35.0%
GGATGCATATCTAGAAGAAT+TGG + chr1_4:2198654-2198673 Msa0143300:three_prime_UTR 35.0%
TTTACTAGTGGTTCAGTTGA+AGG + chr1_4:2198678-2198697 Msa0143300:three_prime_UTR 35.0%
! GGTGGATAGTTAGTTTATGG+AGG + chr1_4:2186511-2186530 Msa0143300:five_prime_UTR 40.0%
TGGAGGAAATTAGCGTAGTT+TGG + chr1_4:2186528-2186547 Msa0143300:five_prime_UTR 40.0%
GGAGGAAATTAGCGTAGTTT+GGG + chr1_4:2186529-2186548 Msa0143300:five_prime_UTR 40.0%
GAGGAAATTAGCGTAGTTTG+GGG + chr1_4:2186530-2186549 Msa0143300:five_prime_UTR 40.0%
AGGAAATTAGCGTAGTTTGG+GGG + chr1_4:2186531-2186550 Msa0143300:five_prime_UTR 40.0%
GATCGAAACAACGCAAAACT+TGG + chr1_4:2186604-2186623 Msa0143300:CDS 40.0%
ATGGATGGAATGGAATGGAA+TGG - chr1_4:2186663-2186682 None:intergenic 40.0%
ATTCCATTCCATTCCATCCA+TGG + chr1_4:2186662-2186681 Msa0143300:CDS 40.0%
ATTCCAATTGACAGTGATGG+AGG - chr1_4:2187013-2187032 None:intergenic 40.0%
CAGATTCCAATTGACAGTGA+TGG - chr1_4:2187016-2187035 None:intergenic 40.0%
!!! ATGTGAGGATTGGTTTTCTG+AGG + chr1_4:2187369-2187388 Msa0143300:CDS 40.0%
TGGAAATTTGCCTCCAATCA+TGG + chr1_4:2187451-2187470 Msa0143300:intron 40.0%
AAACGTGTACGTACCATGAT+TGG - chr1_4:2187467-2187486 None:intergenic 40.0%
TGCACAATTATGCTTGTCTG+TGG + chr1_4:2187775-2187794 Msa0143300:intron 40.0%
ACCTGTCAACAGTCAAATGA+GGG - chr1_4:2187953-2187972 None:intergenic 40.0%
AACCTGTCAACAGTCAAATG+AGG - chr1_4:2187954-2187973 None:intergenic 40.0%
TCTCTGATGCACTTCTTCTT+TGG + chr1_4:2188069-2188088 Msa0143300:CDS 40.0%
ACATGGAAAATTTGGAGACG+CGG + chr1_4:2188102-2188121 Msa0143300:CDS 40.0%
CGCAAGATTCAGCTAAACAA+TGG - chr1_4:2188208-2188227 None:intergenic 40.0%
TAGCTGAATCTTGCGTAGAA+AGG + chr1_4:2188213-2188232 Msa0143300:intron 40.0%
CTTGCGTAGAAAGGATATAC+AGG + chr1_4:2188222-2188241 Msa0143300:intron 40.0%
AAAAAGGGGCTTCATAGGAT+AGG - chr1_4:2188258-2188277 None:intergenic 40.0%
CTCTTGCATCTCTAAACAAC+AGG + chr1_4:2188281-2188300 Msa0143300:intron 40.0%
GTTAGGTTTCGGTAATATGG+TGG - chr1_4:2188315-2188334 None:intergenic 40.0%
GCAGTTAGGTTTCGGTAATA+TGG - chr1_4:2188318-2188337 None:intergenic 40.0%
TATTCAACTGTCTGACAGTC+AGG + chr1_4:2188588-2188607 Msa0143300:intron 40.0%
CAAATCCAAACGACACTGTT+AGG + chr1_4:2188937-2188956 Msa0143300:intron 40.0%
! AAAGTCTTGTGGTAACTGTG+AGG - chr1_4:2189110-2189129 None:intergenic 40.0%
TCACAGTTACCACAAGACTT+TGG + chr1_4:2189109-2189128 Msa0143300:intron 40.0%
ATATGTGGTTGGATATGGCA+GGG + chr1_4:2189153-2189172 Msa0143300:intron 40.0%
AGGATTGCGAGTTAAGAAGT+AGG - chr1_4:2189185-2189204 None:intergenic 40.0%
! ACTTTGCATCTAATGGACAC+AGG + chr1_4:2189210-2189229 Msa0143300:intron 40.0%
TAGAAGGGTAGAAGGAGATT+GGG - chr1_4:2189301-2189320 None:intergenic 40.0%
TTAGAAGGGTAGAAGGAGAT+TGG - chr1_4:2189302-2189321 None:intergenic 40.0%
AGTGGTATTAGAAGGGTAGA+AGG - chr1_4:2189309-2189328 None:intergenic 40.0%
AGGACAGAGCCAGAATTTAA+TGG - chr1_4:2189497-2189516 None:intergenic 40.0%
! ATGTGGAACTTTTGCCTTTG+TGG + chr1_4:2189610-2189629 Msa0143300:CDS 40.0%
!! GTGCTCTGAAAATTGAACCA+AGG - chr1_4:2189787-2189806 None:intergenic 40.0%
GCACTGAATATTCTCCCTAT+TGG + chr1_4:2189803-2189822 Msa0143300:CDS 40.0%
! ATAGTGACTTGCAACATCTC+AGG + chr1_4:2189846-2189865 Msa0143300:CDS 40.0%
AGTAAGAATCCACTTACTCC+AGG + chr1_4:2190108-2190127 Msa0143300:intron 40.0%
! GAAAAGCTTAAACTTGCTCC+TGG - chr1_4:2190129-2190148 None:intergenic 40.0%
AGACTTACTCTCAGAGTAAG+TGG + chr1_4:2190395-2190414 Msa0143300:intron 40.0%
GCAGACACTACATATTGTTG+GGG - chr1_4:2190423-2190442 None:intergenic 40.0%
CGCAGACACTACATATTGTT+GGG - chr1_4:2190424-2190443 None:intergenic 40.0%
GTCTGCGCAAAATGAATAGA+CGG + chr1_4:2190437-2190456 Msa0143300:intron 40.0%
GACATTATGGAAAGCTACGA+AGG - chr1_4:2190467-2190486 None:intergenic 40.0%
!! GGGTGCTGCATTTGATTTTT+GGG + chr1_4:2190573-2190592 Msa0143300:intron 40.0%
!! TGCTGCATTTGATTTTTGGG+AGG + chr1_4:2190576-2190595 Msa0143300:intron 40.0%
!! CATTTGATTTTTGGGAGGCT+GGG + chr1_4:2190581-2190600 Msa0143300:intron 40.0%
!! ATTTGATTTTTGGGAGGCTG+GGG + chr1_4:2190582-2190601 Msa0143300:intron 40.0%
!!! CTATTGGTCCTTCTGGTTTT+TGG + chr1_4:2190796-2190815 Msa0143300:intron 40.0%
TGATGTGCTTGAATAGCAGT+AGG - chr1_4:2190834-2190853 None:intergenic 40.0%
! GGTCTATTTTCTGCATGCAA+TGG - chr1_4:2190959-2190978 None:intergenic 40.0%
!! TATCTTTGAAGCAGTTCAGG+AGG + chr1_4:2191145-2191164 Msa0143300:CDS 40.0%
ATGCTGTTAATTGCTTCAGC+CGG + chr1_4:2191204-2191223 Msa0143300:CDS 40.0%
TTCTTAAGGAAGGAAAGGAC+CGG - chr1_4:2191226-2191245 None:intergenic 40.0%
TCAGGACAATCAGTTTCCTT+CGG + chr1_4:2191273-2191292 Msa0143300:CDS 40.0%
GTAACTGATGCTGGAATTAG+AGG - chr1_4:2191353-2191372 None:intergenic 40.0%
GTGGTCTGTGATACTTCATT+TGG + chr1_4:2191772-2191791 Msa0143300:CDS 40.0%
!! CTTTGCTCAGCTATTTCTGA+TGG + chr1_4:2191814-2191833 Msa0143300:CDS 40.0%
AAACATGTCAAGGGATCACA+AGG - chr1_4:2192184-2192203 None:intergenic 40.0%
TTGTGATCCCTTGACATGTT+TGG + chr1_4:2192183-2192202 Msa0143300:intron 40.0%
TTGAAGGCCAAACATGTCAA+GGG - chr1_4:2192193-2192212 None:intergenic 40.0%
TTTGAAGGCCAAACATGTCA+AGG - chr1_4:2192194-2192213 None:intergenic 40.0%
!!! AGAGCTACTTTTTGTCCTTG+TGG + chr1_4:2192376-2192395 Msa0143300:CDS 40.0%
!!! GAGCTACTTTTTGTCCTTGT+GGG + chr1_4:2192377-2192396 Msa0143300:CDS 40.0%
!!! AGCTACTTTTTGTCCTTGTG+GGG + chr1_4:2192378-2192397 Msa0143300:CDS 40.0%
CATTTACAACTGTCCTTGAG+GGG - chr1_4:2192441-2192460 None:intergenic 40.0%
CCATTTACAACTGTCCTTGA+GGG - chr1_4:2192442-2192461 None:intergenic 40.0%
ACCATTTACAACTGTCCTTG+AGG - chr1_4:2192443-2192462 None:intergenic 40.0%
TTGAAGAATCTATGCCTGAG+AGG + chr1_4:2192622-2192641 Msa0143300:CDS 40.0%
TGAAGAATCTATGCCTGAGA+GGG + chr1_4:2192623-2192642 Msa0143300:CDS 40.0%
TGACACATCAAGCATTTCCA+AGG - chr1_4:2192692-2192711 None:intergenic 40.0%
TGGTTTGACATAATGAGGAC+AGG + chr1_4:2192942-2192961 Msa0143300:intron 40.0%
GGTTTGACATAATGAGGACA+GGG + chr1_4:2192943-2192962 Msa0143300:intron 40.0%
TCATGTAAGGAGGAAAAGCA+AGG - chr1_4:2193173-2193192 None:intergenic 40.0%
ATGCAGTTCTTCATGTAAGG+AGG - chr1_4:2193183-2193202 None:intergenic 40.0%
AGCATGCAGTTCTTCATGTA+AGG - chr1_4:2193186-2193205 None:intergenic 40.0%
! AAAGCACTTAGAGAGAAGGA+AGG - chr1_4:2193260-2193279 None:intergenic 40.0%
TTCCTTCTCTCTAAGTGCTT+TGG + chr1_4:2193259-2193278 Msa0143300:CDS 40.0%
! TTCCAAAGCACTTAGAGAGA+AGG - chr1_4:2193264-2193283 None:intergenic 40.0%
GTCTTTAATGACGTCAATGC+AGG - chr1_4:2193287-2193306 None:intergenic 40.0%
ACCATCAATGTAGGTTTAGG+TGG + chr1_4:2193305-2193324 Msa0143300:CDS 40.0%
TCCACCTAAACCTACATTGA+TGG - chr1_4:2193309-2193328 None:intergenic 40.0%
GTAGGTTTAGGTGGAATGTT+AGG + chr1_4:2193314-2193333 Msa0143300:CDS 40.0%
TAAGAAGCTCCAATCCACAT+GGG - chr1_4:2193420-2193439 None:intergenic 40.0%
ATAAGAAGCTCCAATCCACA+TGG - chr1_4:2193421-2193440 None:intergenic 40.0%
!! TGTGGATTGGAGCTTCTTAT+TGG + chr1_4:2193421-2193440 Msa0143300:intron 40.0%
AGCTTCTTATTGGTCGCTAA+GGG + chr1_4:2193431-2193450 Msa0143300:intron 40.0%
AAAGAGAACATGAAGCGAGA+AGG + chr1_4:2193852-2193871 Msa0143300:intron 40.0%
! TTTTACTGCCAACTTTCCGA+TGG - chr1_4:2193952-2193971 None:intergenic 40.0%
TTTGTAGGGACCGATAAAGT+AGG + chr1_4:2194128-2194147 Msa0143300:intron 40.0%
AAAGGCTTATCCCACTAAGT+GGG + chr1_4:2194160-2194179 Msa0143300:intron 40.0%
CGTAATTTGATCCATGTAGC+TGG - chr1_4:2194187-2194206 None:intergenic 40.0%
GTCCTTGCTACATAATCTAC+AGG + chr1_4:2194313-2194332 Msa0143300:intron 40.0%
GACCTGTAGATTATGTAGCA+AGG - chr1_4:2194318-2194337 None:intergenic 40.0%
!! AGATGGTGGAAAATAGGCTT+AGG - chr1_4:2194363-2194382 None:intergenic 40.0%
CAGCATTAGAAAGAGAGTTG+GGG - chr1_4:2194404-2194423 None:intergenic 40.0%
GACAGCATTAGAAAGAGAGT+TGG - chr1_4:2194406-2194425 None:intergenic 40.0%
GGATGTGTAGTAAGACTAGA+TGG - chr1_4:2194443-2194462 None:intergenic 40.0%
CGCTTACTTTATTCTCGTGT+TGG + chr1_4:2194488-2194507 Msa0143300:intron 40.0%
!! AATGGATTGCAGATGAGGAA+TGG - chr1_4:2194621-2194640 None:intergenic 40.0%
!! TTGTTGTTACGGTTTTCTCC+AGG + chr1_4:2195248-2195267 Msa0143300:intron 40.0%
TTTGGTTGAGCTTTCATTGC+TGG + chr1_4:2195470-2195489 Msa0143300:CDS 40.0%
TTGGTTGAGCTTTCATTGCT+GGG + chr1_4:2195471-2195490 Msa0143300:CDS 40.0%
TCCTCTTCTTAACTCAGGTT+AGG + chr1_4:2195497-2195516 Msa0143300:intron 40.0%
TCCTAACCTGAGTTAAGAAG+AGG - chr1_4:2195501-2195520 None:intergenic 40.0%
! TACTGCTACTTAGTACTCCT+CGG + chr1_4:2195683-2195702 Msa0143300:intron 40.0%
! GTTGCTAGTATTTGTTACCG+AGG - chr1_4:2195703-2195722 None:intergenic 40.0%
GTCAGCAATCAATCACTGTA+AGG - chr1_4:2195786-2195805 None:intergenic 40.0%
! ATTAGTTTACAAGGGGGGAT+GGG - chr1_4:2195933-2195952 None:intergenic 40.0%
ATACATAGAAGACAGCCTCT+CGG - chr1_4:2196025-2196044 None:intergenic 40.0%
AATAGCCATTATTCACGGAG+AGG - chr1_4:2196189-2196208 None:intergenic 40.0%
TGCAGTTGCAAGCAAAAGTA+AGG - chr1_4:2196330-2196349 None:intergenic 40.0%
! TGAGACGCTAACATTTTCTG+TGG + chr1_4:2197358-2197377 Msa0143300:intron 40.0%
ATTTGACCTTTCCATACGCA+GGG + chr1_4:2197514-2197533 Msa0143300:intron 40.0%
GTACTGCCCTAACTTACATT+TGG - chr1_4:2197739-2197758 None:intergenic 40.0%
AGGGCAGTACTATCTTTCTT+CGG + chr1_4:2197749-2197768 Msa0143300:intron 40.0%
ACGATCGGATGTAAAAGCAA+AGG - chr1_4:2197872-2197891 None:intergenic 40.0%
CGTGACATGTTTGTAATCTG+TGG + chr1_4:2197889-2197908 Msa0143300:intron 40.0%
CTAACACCTCAAGTGTACTT+TGG - chr1_4:2198018-2198037 None:intergenic 40.0%
!! AGCTTAGTCTTGTAACCTCA+AGG + chr1_4:2198050-2198069 Msa0143300:intron 40.0%
AATTTGAACTCAGTGCCTTG+AGG - chr1_4:2198068-2198087 None:intergenic 40.0%
AGTTCAAATTCCCTCAGAGA+TGG + chr1_4:2198078-2198097 Msa0143300:intron 40.0%
! CCATTTTACAACCATCTCTG+AGG - chr1_4:2198092-2198111 None:intergenic 40.0%
CCTCAGAGATGGTTGTAAAA+TGG + chr1_4:2198089-2198108 Msa0143300:intron 40.0%
TCCTCCTCCAAAATATATCG+GGG + chr1_4:2198182-2198201 Msa0143300:intron 40.0%
! GTTACTCCCCCGATATATTT+TGG - chr1_4:2198192-2198211 None:intergenic 40.0%
! GTGGGGCATTTATTTGAACA+TGG + chr1_4:2198224-2198243 Msa0143300:intron 40.0%
ATAAGCAGAGATCATCGAGT+GGG - chr1_4:2198254-2198273 None:intergenic 40.0%
TATTTCATGCGCATAAGCCT+TGG + chr1_4:2198336-2198355 Msa0143300:intron 40.0%
!!! CGCATAAGCCTTGGTTTTTT+GGG + chr1_4:2198345-2198364 Msa0143300:intron 40.0%
!!! ATAAGCCTTGGTTTTTTGGG+AGG + chr1_4:2198348-2198367 Msa0143300:intron 40.0%
!!! TAAGCCTTGGTTTTTTGGGA+GGG + chr1_4:2198349-2198368 Msa0143300:intron 40.0%
AAAACCCTCCCAAAAAACCA+AGG - chr1_4:2198356-2198375 None:intergenic 40.0%
TTCTGTTTCACGTTGTCTAC+AGG + chr1_4:2198417-2198436 Msa0143300:intron 40.0%
CGAAAATCTCACTAGAACAG+TGG + chr1_4:2198613-2198632 Msa0143300:CDS 40.0%
CCGAGTAAGCGTATATTCAT+GGG - chr1_4:2198874-2198893 None:intergenic 40.0%
CCCATGAATATACGCTTACT+CGG + chr1_4:2198871-2198890 Msa0143300:three_prime_UTR 40.0%
TCCGAGTAAGCGTATATTCA+TGG - chr1_4:2198875-2198894 None:intergenic 40.0%
! TTGCGTTGTTTCGATCGATC+TGG - chr1_4:2186600-2186619 None:intergenic 45.0%
TGAAACCTCCATGGATGGAA+TGG - chr1_4:2186673-2186692 None:intergenic 45.0%
CACCACTCTTTGTATTTCCG+AGG + chr1_4:2186864-2186883 Msa0143300:CDS 45.0%
TTGCTCTCTATGTCGCTCTT+AGG + chr1_4:2187309-2187328 Msa0143300:intron 45.0%
TGCTCTCTATGTCGCTCTTA+GGG + chr1_4:2187310-2187329 Msa0143300:intron 45.0%
!!! GGGAGCACTTTATTTTGGAG+TGG + chr1_4:2187330-2187349 Msa0143300:intron 45.0%
!! TATGTATCGGCTACCTAGCA+AGG + chr1_4:2187637-2187656 Msa0143300:intron 45.0%
ACCCTCATTTGACTGTTGAC+AGG + chr1_4:2187949-2187968 Msa0143300:CDS 45.0%
GAAGCAGAAGACAACTGCAA+TGG + chr1_4:2188128-2188147 Msa0143300:CDS 45.0%
CACTGATGGCAGTTAGGTTT+CGG - chr1_4:2188326-2188345 None:intergenic 45.0%
ACACATCACTGATGGCAGTT+AGG - chr1_4:2188332-2188351 None:intergenic 45.0%
! TCGAAAGCATATGGCACAGA+TGG + chr1_4:2188374-2188393 Msa0143300:intron 45.0%
! TTTAGGCCCATAGCTTTTGG+AGG - chr1_4:2188654-2188673 None:intergenic 45.0%
GTGGAAAAGGGGAAAACGAA+TGG - chr1_4:2188904-2188923 None:intergenic 45.0%
! CGTTTTCCCCTTTTCCACAA+CGG + chr1_4:2188906-2188925 Msa0143300:intron 45.0%
CAGTTACCACAAGACTTTGG+TGG + chr1_4:2189112-2189131 Msa0143300:intron 45.0%
CATATGTGGTTGGATATGGC+AGG + chr1_4:2189152-2189171 Msa0143300:intron 45.0%
! AGAAGGAGATTGGGGCATTA+GGG - chr1_4:2189292-2189311 None:intergenic 45.0%
! TAGAAGGAGATTGGGGCATT+AGG - chr1_4:2189293-2189312 None:intergenic 45.0%
AGAAGGGTAGAAGGAGATTG+GGG - chr1_4:2189300-2189319 None:intergenic 45.0%
TTACCTGCAGCAAACCACAA+AGG - chr1_4:2189627-2189646 None:intergenic 45.0%
!!! TTATTTTAGGCAGCTGGCTG+AGG + chr1_4:2189757-2189776 Msa0143300:CDS 45.0%
ATTGCTTGCTTTCTCCAGAG+AGG + chr1_4:2190001-2190020 Msa0143300:intron 45.0%
! AAACTTGCTCCTGGAGTAAG+TGG - chr1_4:2190120-2190139 None:intergenic 45.0%
GCGCAGACACTACATATTGT+TGG - chr1_4:2190425-2190444 None:intergenic 45.0%
!!! GGGGTGCTGCATTTGATTTT+TGG + chr1_4:2190572-2190591 Msa0143300:intron 45.0%
!! GCATTTGATTTTTGGGAGGC+TGG + chr1_4:2190580-2190599 Msa0143300:intron 45.0%
!! GAAGTGCAGAGGCATCATTA+TGG - chr1_4:2190635-2190654 None:intergenic 45.0%
GGATCCGTTAGATATGATGC+AGG - chr1_4:2191032-2191051 None:intergenic 45.0%
! ATCTAACGGATCCCATGCAA+AGG + chr1_4:2191039-2191058 Msa0143300:CDS 45.0%
AGCACTTCTCCAATAACCGA+AGG - chr1_4:2191292-2191311 None:intergenic 45.0%
!! GTTATTGGAGAAGTGCTCTC+TGG + chr1_4:2191295-2191314 Msa0143300:CDS 45.0%
TGTTACGAAACTCACCTTGG+AGG + chr1_4:2191487-2191506 Msa0143300:CDS 45.0%
GTTACGAAACTCACCTTGGA+GGG + chr1_4:2191488-2191507 Msa0143300:CDS 45.0%
GAAGAACTGATGTCAGTGGT+AGG + chr1_4:2191510-2191529 Msa0143300:intron 45.0%
! GTCAGTGGTAGGTGTTTTCA+TGG + chr1_4:2191521-2191540 Msa0143300:intron 45.0%
AGAATTTGGAGATGTACCGG+AGG - chr1_4:2191654-2191673 None:intergenic 45.0%
!! TGCTCAGCTATTTCTGATGG+TGG + chr1_4:2191817-2191836 Msa0143300:CDS 45.0%
ACAACTCAGTGGTAACCTCA+AGG + chr1_4:2192401-2192420 Msa0143300:CDS 45.0%
CAACTCAGTGGTAACCTCAA+GGG + chr1_4:2192402-2192421 Msa0143300:CDS 45.0%
GATTTGAACACCATCCCTTG+AGG - chr1_4:2192419-2192438 None:intergenic 45.0%
ATGGTGTTCAAATCCCCTCA+AGG + chr1_4:2192425-2192444 Msa0143300:CDS 45.0%
CCCTCAAGGACAGTTGTAAA+TGG + chr1_4:2192439-2192458 Msa0143300:CDS 45.0%
TATATAGTGCCTGGTCAACC+AGG - chr1_4:2192654-2192673 None:intergenic 45.0%
!!! GAGTTTTAAGGAAGTGGGGT+TGG + chr1_4:2192831-2192850 Msa0143300:intron 45.0%
GAAGAACTGCATGCTGAGTT+AGG + chr1_4:2193191-2193210 Msa0143300:CDS 45.0%
GAGCTTCTTATTGGTCGCTA+AGG + chr1_4:2193430-2193449 Msa0143300:intron 45.0%
GAGAAGGCAGCCTAAATTCA+TGG + chr1_4:2193868-2193887 Msa0143300:intron 45.0%
TCCTAAGACCATCGGAAAGT+TGG + chr1_4:2193941-2193960 Msa0143300:intron 45.0%
CAAAGGCTTATCCCACTAAG+TGG + chr1_4:2194159-2194178 Msa0143300:intron 45.0%
AAGGCTTATCCCACTAAGTG+GGG + chr1_4:2194161-2194180 Msa0143300:intron 45.0%
TGTAGCAAGGACAGTAGATG+TGG - chr1_4:2194305-2194324 None:intergenic 45.0%
AGATGAGGAATGGCATTTCC+GGG - chr1_4:2194611-2194630 None:intergenic 45.0%
CAGATGAGGAATGGCATTTC+CGG - chr1_4:2194612-2194631 None:intergenic 45.0%
AAGAGCTATGCAAGAGCTGT+TGG + chr1_4:2194712-2194731 Msa0143300:intron 45.0%
CCAACGAACAGCTGGAAAAT+TGG - chr1_4:2194870-2194889 None:intergenic 45.0%
! CCAATTTTCCAGCTGTTCGT+TGG + chr1_4:2194867-2194886 Msa0143300:intron 45.0%
! GGGGAATTTGAAGCTTGACA+TGG - chr1_4:2195361-2195380 None:intergenic 45.0%
AATGGCGTATATTGGCGGTT+TGG - chr1_4:2195643-2195662 None:intergenic 45.0%
! GGAGTACTAAGTAGCAGTAG+AGG - chr1_4:2195682-2195701 None:intergenic 45.0%
AGAGAAAAAGTAACAGGGGG+TGG + chr1_4:2195725-2195744 Msa0143300:intron 45.0%
GAGAAAAAGTAACAGGGGGT+GGG + chr1_4:2195726-2195745 Msa0143300:intron 45.0%
AGAAAAAGTAACAGGGGGTG+GGG + chr1_4:2195727-2195746 Msa0143300:intron 45.0%
ATAATTTCACGTGCATGGCC+AGG + chr1_4:2195869-2195888 Msa0143300:CDS 45.0%
! CATTAGTTTACAAGGGGGGA+TGG - chr1_4:2195934-2195953 None:intergenic 45.0%
TTGCTCAGTTTCAGCCTTTG+AGG - chr1_4:2196078-2196097 None:intergenic 45.0%
GTCTTGCAACTGTCATCTTC+TGG + chr1_4:2196106-2196125 Msa0143300:intron 45.0%
CATTTGACCTTTCCATACGC+AGG + chr1_4:2197513-2197532 Msa0143300:intron 45.0%
CGAAGTTTCTTTGTAGCCCA+AGG - chr1_4:2197540-2197559 None:intergenic 45.0%
!! CGTTTTACATGCTGCTTCAG+AGG + chr1_4:2197558-2197577 Msa0143300:CDS 45.0%
GTGTCCCCTGATTCAACTAA+AGG - chr1_4:2197987-2198006 None:intergenic 45.0%
ACTCCTCCAAAGTACACTTG+AGG + chr1_4:2198009-2198028 Msa0143300:intron 45.0%
ACACCTCAAGTGTACTTTGG+AGG - chr1_4:2198015-2198034 None:intergenic 45.0%
CCTCCTCCAAAATATATCGG+GGG + chr1_4:2198183-2198202 Msa0143300:intron 45.0%
!! ACTCCCCCGATATATTTTGG+AGG - chr1_4:2198189-2198208 None:intergenic 45.0%
TAAGCAGAGATCATCGAGTG+GGG - chr1_4:2198253-2198272 None:intergenic 45.0%
CATAAGCAGAGATCATCGAG+TGG - chr1_4:2198255-2198274 None:intergenic 45.0%
!!! GCGCATAAGCCTTGGTTTTT+TGG + chr1_4:2198344-2198363 Msa0143300:intron 45.0%
!! AGGGTTTTAGTCCTACCACT+GGG + chr1_4:2198368-2198387 Msa0143300:intron 45.0%
ATCGGTGCATGTAGAAACAC+TGG + chr1_4:2198574-2198593 Msa0143300:CDS 45.0%
TAGAAACACTGGTGCTTGTG+TGG + chr1_4:2198585-2198604 Msa0143300:CDS 45.0%
TCTCACTAGAACAGTGGTGA+AGG + chr1_4:2198619-2198638 Msa0143300:CDS 45.0%
CTAGAACAGTGGTGAAGGAA+AGG + chr1_4:2198624-2198643 Msa0143300:CDS 45.0%
! TGGTGAAGGAAAGGCTTTAG+TGG + chr1_4:2198633-2198652 Msa0143300:CDS 45.0%
!!! CAATATAATTTTATTATTTT+GGG - chr1_4:2193555-2193574 None:intergenic 5.0%
!!! TCAATATAATTTTATTATTT+TGG - chr1_4:2193556-2193575 None:intergenic 5.0%
!!! TATTTTATTTTATTTTTGAA+TGG + chr1_4:2197425-2197444 Msa0143300:intron 5.0%
!! AAAAATATTAAAAAAAATTG+CGG - chr1_4:2198153-2198172 None:intergenic 5.0%
CCTCCATGGATGGAATGGAA+TGG - chr1_4:2186668-2186687 None:intergenic 50.0%
CCATTCCATTCCATCCATGG+AGG + chr1_4:2186665-2186684 Msa0143300:CDS 50.0%
GAGAGTGAAACCTCCATGGA+TGG - chr1_4:2186678-2186697 None:intergenic 50.0%
GTCTGAGAGTGAAACCTCCA+TGG - chr1_4:2186682-2186701 None:intergenic 50.0%
TGGATGATGATCCGAGCTGT+TGG - chr1_4:2186730-2186749 None:intergenic 50.0%
AGTGGTGAATGAGCCTGTTG+CGG - chr1_4:2186851-2186870 None:intergenic 50.0%
GGCCTCGGAAATACAAAGAG+TGG - chr1_4:2186869-2186888 None:intergenic 50.0%
TATTTCCGAGGCCTTCTCAG+TGG + chr1_4:2186876-2186895 Msa0143300:CDS 50.0%
ACCTGAAGCTTCCACTGAGA+AGG - chr1_4:2186890-2186909 None:intergenic 50.0%
! CCAATTGACAGTGATGGAGG+CGG - chr1_4:2187010-2187029 None:intergenic 50.0%
! AAGGGGGAGGACATTTTGAG+TGG - chr1_4:2187091-2187110 None:intergenic 50.0%
AAATGTCCTCCCCCTTTACG+AGG + chr1_4:2187095-2187114 Msa0143300:CDS 50.0%
TTACTACCTCGTAAAGGGGG+AGG - chr1_4:2187104-2187123 None:intergenic 50.0%
CGTGTACGTACCATGATTGG+AGG - chr1_4:2187464-2187483 None:intergenic 50.0%
! TTTCCCCTTTTCCACAACGG+AGG + chr1_4:2188909-2188928 Msa0143300:intron 50.0%
ACTCCTCCGTTGTGGAAAAG+GGG - chr1_4:2188915-2188934 None:intergenic 50.0%
CACTCCTCCGTTGTGGAAAA+GGG - chr1_4:2188916-2188935 None:intergenic 50.0%
TCACTCCTCCGTTGTGGAAA+AGG - chr1_4:2188917-2188936 None:intergenic 50.0%
GATTTGTCACTCCTCCGTTG+TGG - chr1_4:2188923-2188942 None:intergenic 50.0%
CTTGTGGTAACTGTGAGGCT+CGG - chr1_4:2189105-2189124 None:intergenic 50.0%
CATGCTCCACCAAAGTCTTG+TGG - chr1_4:2189121-2189140 None:intergenic 50.0%
!! TCTGGCTCTGTCCTCATTGA+TGG + chr1_4:2189503-2189522 Msa0143300:intron 50.0%
!! TTGCCTTTGTGGTTTGCTGC+AGG + chr1_4:2189621-2189640 Msa0143300:CDS 50.0%
! GCTGGGGTGCCAACATATTT+GGG + chr1_4:2190598-2190617 Msa0143300:intron 50.0%
! GGCAAAGATTGGAAGTGCAG+AGG - chr1_4:2190646-2190665 None:intergenic 50.0%
! TAACGGATCCCATGCAAAGG+AGG + chr1_4:2191042-2191061 Msa0143300:CDS 50.0%
!! CTTTGAAGCAGTTCAGGAGG+TGG + chr1_4:2191148-2191167 Msa0143300:CDS 50.0%
TGGTATCACAACAGGGCTAG+AGG - chr1_4:2191384-2191403 None:intergenic 50.0%
TAGCCCTGTTGTGATACCAC+CGG + chr1_4:2191385-2191404 Msa0143300:CDS 50.0%
! GTACCGGTGGTATCACAACA+GGG - chr1_4:2191391-2191410 None:intergenic 50.0%
TCAAGACTTGGGGTCTTCTC+TGG - chr1_4:2191413-2191432 None:intergenic 50.0%
GACATCAGTTCTTCCCTCCA+AGG - chr1_4:2191504-2191523 None:intergenic 50.0%
GAGGGAAGAACTGATGTCAG+TGG + chr1_4:2191506-2191525 Msa0143300:CDS 50.0%
CTTCAAGCTCTGCATATGGG+TGG + chr1_4:2191895-2191914 Msa0143300:CDS 50.0%
TCAGTGGTAACCTCAAGGGA+TGG + chr1_4:2192406-2192425 Msa0143300:CDS 50.0%
GCTTGATGTGTCAGACACCA+AGG + chr1_4:2192699-2192718 Msa0143300:CDS 50.0%
TCTAGCAAGGGACAGATTGC+TGG - chr1_4:2193362-2193381 None:intergenic 50.0%
TGGGGGAAAGATGCTTCTCT+GGG + chr1_4:2193735-2193754 Msa0143300:intron 50.0%
! GGAAAGATGCTTCTCTGGGA+TGG + chr1_4:2193739-2193758 Msa0143300:intron 50.0%
!! TGCTTCTCTGGGATGGTTGA+AGG + chr1_4:2193746-2193765 Msa0143300:intron 50.0%
GCCAACTTTCCGATGGTCTT+AGG - chr1_4:2193945-2193964 None:intergenic 50.0%
AGCAAGGACAGTAGATGTGG+AGG - chr1_4:2194302-2194321 None:intergenic 50.0%
GTCTTGGCTTAGCCCAAAGA+AGG - chr1_4:2194661-2194680 None:intergenic 50.0%
GCTATGCAAGAGCTGTTGGT+CGG + chr1_4:2194716-2194735 Msa0143300:intron 50.0%
ACAGAAGACCAACGAACAGC+TGG - chr1_4:2194878-2194897 None:intergenic 50.0%
ACACACAGAGCAGAAGACCA+AGG - chr1_4:2195164-2195183 None:intergenic 50.0%
GGCTTGAAAGAGTAACCCCA+TGG + chr1_4:2195403-2195422 Msa0143300:CDS 50.0%
GGCTGTCCTCTTCTTAACTC+AGG + chr1_4:2195492-2195511 Msa0143300:CDS 50.0%
CTTGGTCGCTATGCATCTTG+AGG + chr1_4:2195892-2195911 Msa0143300:CDS 50.0%
GGGTACCTCTCCGTGAATAA+TGG + chr1_4:2196181-2196200 Msa0143300:intron 50.0%
GATAGAAGGGTCATGGAGAG+TGG + chr1_4:2196302-2196321 Msa0143300:intron 50.0%
!! GCACATCTTCTAGGACACCA+TGG + chr1_4:2197942-2197961 Msa0143300:intron 50.0%
! CACTTGAGGTGTTAGCTCAG+TGG + chr1_4:2198023-2198042 Msa0143300:intron 50.0%
!! CCCCCGATATATTTTGGAGG+AGG - chr1_4:2198186-2198205 None:intergenic 50.0%
AAGCAGAGATCATCGAGTGG+GGG - chr1_4:2198252-2198271 None:intergenic 50.0%
!! GAGGGTTTTAGTCCTACCAC+TGG + chr1_4:2198367-2198386 Msa0143300:intron 50.0%
ATCAGAGTACACCCAGTGGT+AGG - chr1_4:2198382-2198401 None:intergenic 50.0%
TCACATCAGAGTACACCCAG+TGG - chr1_4:2198386-2198405 None:intergenic 50.0%
TCGATCTGGCGCATGGATAC+CGG - chr1_4:2186586-2186605 None:intergenic 55.0%
GTTTCGATCGATCTGGCGCA+TGG - chr1_4:2186593-2186612 None:intergenic 55.0%
AGCTGTTGGTGCAAACGAGG+AGG - chr1_4:2186716-2186735 None:intergenic 55.0%
CCTCGTTTGCACCAACAGCT+CGG + chr1_4:2186716-2186735 Msa0143300:CDS 55.0%
GCGGTGTGCGTGAAGTTTGA+TGG - chr1_4:2186832-2186851 None:intergenic 55.0%
AACTTCACGCACACCGCAAC+AGG + chr1_4:2186835-2186854 Msa0143300:CDS 55.0%
AGCTTCCACTGAGAAGGCCT+CGG - chr1_4:2186884-2186903 None:intergenic 55.0%
GCCTTCTCAGTGGAAGCTTC+AGG + chr1_4:2186886-2186905 Msa0143300:CDS 55.0%
CCGCCTCCATCACTGTCAAT+TGG + chr1_4:2187007-2187026 Msa0143300:CDS 55.0%
AACTGTCTGACAGTCAGGCC+TGG + chr1_4:2188593-2188612 Msa0143300:intron 55.0%
! TGCAAGGTGCTCAACCAAGC+CGG + chr1_4:2188627-2188646 Msa0143300:intron 55.0%
! GGCTGGGGTGCCAACATATT+TGG + chr1_4:2190597-2190616 Msa0143300:intron 55.0%
!! GGTACCGGTGGTATCACAAC+AGG - chr1_4:2191392-2191411 None:intergenic 55.0%
CTTGGGGTCTTCTCTGGTAC+CGG - chr1_4:2191407-2191426 None:intergenic 55.0%
CCATGGCAGATTTGAGCCTC+CGG + chr1_4:2191635-2191654 Msa0143300:intron 55.0%
TCTGCATATGGGTGGCTGCA+TGG + chr1_4:2191903-2191922 Msa0143300:CDS 55.0%
CTGCATATGGGTGGCTGCAT+GGG + chr1_4:2191904-2191923 Msa0143300:CDS 55.0%
TCCTTGTGGGGACAACTCAG+TGG + chr1_4:2192390-2192409 Msa0143300:CDS 55.0%
ACCACTGAGTTGTCCCCACA+AGG - chr1_4:2192394-2192413 None:intergenic 55.0%
ATGCCTGAGAGGGACATACC+TGG + chr1_4:2192633-2192652 Msa0143300:CDS 55.0%
CAACCAGGTATGTCCCTCTC+AGG - chr1_4:2192639-2192658 None:intergenic 55.0%
AGGGACATACCTGGTTGACC+AGG + chr1_4:2192642-2192661 Msa0143300:CDS 55.0%
!!! TTTTTGGGGGTGCTGCTGTC+TGG + chr1_4:2193688-2193707 Msa0143300:intron 55.0%
CCCACGACAGTCCCAAGAAA+CGG - chr1_4:2193719-2193738 None:intergenic 55.0%
CCGTTTCTTGGGACTGTCGT+GGG + chr1_4:2193716-2193735 Msa0143300:intron 55.0%
CGTTTCTTGGGACTGTCGTG+GGG + chr1_4:2193717-2193736 Msa0143300:intron 55.0%
GTTTCTTGGGACTGTCGTGG+GGG + chr1_4:2193718-2193737 Msa0143300:intron 55.0%
GTGGGGGAAAGATGCTTCTC+TGG + chr1_4:2193734-2193753 Msa0143300:intron 55.0%
TGTAGCTGGCCCCACTTAGT+GGG - chr1_4:2194173-2194192 None:intergenic 55.0%
ATGTAGCTGGCCCCACTTAG+TGG - chr1_4:2194174-2194193 None:intergenic 55.0%
ACTAAGTGGGGCCAGCTACA+TGG + chr1_4:2194173-2194192 Msa0143300:intron 55.0%
AGATGCATAGCGACCAAGCC+TGG - chr1_4:2195890-2195909 None:intergenic 55.0%
TACTGGGGAGGGATGAGACA+TGG + chr1_4:2196160-2196179 Msa0143300:intron 55.0%
ACTGGGGAGGGATGAGACAT+GGG + chr1_4:2196161-2196180 Msa0143300:intron 55.0%
CTTTCCATACGCAGGGCCTT+GGG + chr1_4:2197521-2197540 Msa0143300:intron 55.0%
ATCGTCTACGAGTCCCTGGA+GGG - chr1_4:2198556-2198575 None:intergenic 55.0%
TCCAGGGACTCGTAGACGAT+CGG + chr1_4:2198556-2198575 Msa0143300:CDS 55.0%
CCGAGCTGTTGGTGCAAACG+AGG - chr1_4:2186719-2186738 None:intergenic 60.0%
! TGACAGTCAGGCCTGGCCTT+GGG + chr1_4:2188600-2188619 Msa0143300:intron 60.0%
! GCAAGGTGCTCAACCAAGCC+GGG + chr1_4:2188628-2188647 Msa0143300:intron 60.0%
!! TAGCTTTTGGAGGCCCGGCT+TGG - chr1_4:2188644-2188663 None:intergenic 60.0%
AGCCGGGCCTCCAAAAGCTA+TGG + chr1_4:2188644-2188663 Msa0143300:intron 60.0%
GCCGGGCCTCCAAAAGCTAT+GGG + chr1_4:2188645-2188664 Msa0143300:intron 60.0%
!! GCCCATAGCTTTTGGAGGCC+CGG - chr1_4:2188649-2188668 None:intergenic 60.0%
CAGCTGGCTGAGGAAAGCCT+TGG + chr1_4:2189767-2189786 Msa0143300:CDS 60.0%
CCGGAGGCTCAAATCTGCCA+TGG - chr1_4:2191638-2191657 None:intergenic 60.0%
TGTCTGGCCAGGCCGTTTCT+TGG + chr1_4:2193704-2193723 Msa0143300:intron 60.0%
GTCTGGCCAGGCCGTTTCTT+GGG + chr1_4:2193705-2193724 Msa0143300:intron 60.0%
GACAGTCCCAAGAAACGGCC+TGG - chr1_4:2193714-2193733 None:intergenic 60.0%
GCCGTTTCTTGGGACTGTCG+TGG + chr1_4:2193715-2193734 Msa0143300:intron 60.0%
CAGGGGGTGGGGTTGCAATA+TGG + chr1_4:2195738-2195757 Msa0143300:intron 60.0%
TTCACGTGCATGGCCAGGCT+TGG + chr1_4:2195874-2195893 Msa0143300:CDS 60.0%
CCAAGGCCCTGCGTATGGAA+AGG - chr1_4:2197523-2197542 None:intergenic 60.0%
CCTTTCCATACGCAGGGCCT+TGG + chr1_4:2197520-2197539 Msa0143300:intron 60.0%
TCGTCTACGAGTCCCTGGAG+GGG - chr1_4:2198555-2198574 None:intergenic 60.0%
GATCGTCTACGAGTCCCTGG+AGG - chr1_4:2198557-2198576 None:intergenic 60.0%
ACCGATCGTCTACGAGTCCC+TGG - chr1_4:2198560-2198579 None:intergenic 60.0%
CTGACAGTCAGGCCTGGCCT+TGG + chr1_4:2188599-2188618 Msa0143300:intron 65.0%
!! GACAGTCAGGCCTGGCCTTG+GGG + chr1_4:2188601-2188620 Msa0143300:intron 65.0%
!! ACAGTCAGGCCTGGCCTTGG+GGG + chr1_4:2188602-2188621 Msa0143300:intron 65.0%
GAGCACCTTGCACTCCCCCA+AGG - chr1_4:2188619-2188638 None:intergenic 65.0%
! GGGGTCTTCTCTGGTACCGG+TGG - chr1_4:2191404-2191423 None:intergenic 65.0%
GTAGCCCAAGGCCCTGCGTA+TGG - chr1_4:2197528-2197547 None:intergenic 65.0%
AATCTCCCAGTCCCCCCTCC+AGG + chr1_4:2198539-2198558 Msa0143300:CDS 65.0%
ATCTCCCAGTCCCCCCTCCA+GGG + chr1_4:2198540-2198559 Msa0143300:CDS 65.0%
GTCTACGAGTCCCTGGAGGG+GGG - chr1_4:2198553-2198572 None:intergenic 65.0%
CGTCTACGAGTCCCTGGAGG+GGG - chr1_4:2198554-2198573 None:intergenic 65.0%
CCTTGCACTCCCCCAAGGCC+AGG - chr1_4:2188614-2188633 None:intergenic 70.0%
!! CCTGGCCTTGGGGGAGTGCA+AGG + chr1_4:2188611-2188630 Msa0143300:intron 70.0%
GAGTCCCTGGAGGGGGGACT+GGG - chr1_4:2198547-2198566 None:intergenic 70.0%
!! GGGGGTGCTGCTGTCTGGCC+AGG + chr1_4:2193693-2193712 Msa0143300:intron 75.0%
CGAGTCCCTGGAGGGGGGAC+TGG - chr1_4:2198548-2198567 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 2186457 2198895 2186457 ID=Msa0143300;Name=Msa0143300
chr1_4 mRNA 2186457 2198895 2186457 ID=Msa0143300-mRNA-1;Parent=Msa0143300;Name=Msa0143300-mRNA-1;_AED=0.17;_eAED=0.17;_QI=107|0.82|0.88|1|1|1|18|243|1002
chr1_4 exon 2186457 2186907 2186457 ID=Msa0143300-mRNA-1:exon:875;Parent=Msa0143300-mRNA-1
chr1_4 exon 2186996 2187116 2186996 ID=Msa0143300-mRNA-1:exon:876;Parent=Msa0143300-mRNA-1
chr1_4 exon 2187331 2187390 2187331 ID=Msa0143300-mRNA-1:exon:877;Parent=Msa0143300-mRNA-1
chr1_4 exon 2187882 2187970 2187882 ID=Msa0143300-mRNA-1:exon:878;Parent=Msa0143300-mRNA-1
chr1_4 exon 2188058 2188163 2188058 ID=Msa0143300-mRNA-1:exon:879;Parent=Msa0143300-mRNA-1
chr1_4 exon 2189606 2189642 2189606 ID=Msa0143300-mRNA-1:exon:880;Parent=Msa0143300-mRNA-1
chr1_4 exon 2189741 2189892 2189741 ID=Msa0143300-mRNA-1:exon:881;Parent=Msa0143300-mRNA-1
chr1_4 exon 2190969 2191527 2190969 ID=Msa0143300-mRNA-1:exon:882;Parent=Msa0143300-mRNA-1
chr1_4 exon 2191644 2191925 2191644 ID=Msa0143300-mRNA-1:exon:883;Parent=Msa0143300-mRNA-1
chr1_4 exon 2192371 2192460 2192371 ID=Msa0143300-mRNA-1:exon:884;Parent=Msa0143300-mRNA-1
chr1_4 exon 2192575 2192720 2192575 ID=Msa0143300-mRNA-1:exon:885;Parent=Msa0143300-mRNA-1
chr1_4 exon 2193056 2193403 2193056 ID=Msa0143300-mRNA-1:exon:886;Parent=Msa0143300-mRNA-1
chr1_4 exon 2195270 2195513 2195270 ID=Msa0143300-mRNA-1:exon:887;Parent=Msa0143300-mRNA-1
chr1_4 exon 2195858 2195913 2195858 ID=Msa0143300-mRNA-1:exon:888;Parent=Msa0143300-mRNA-1
chr1_4 exon 2196375 2196455 2196375 ID=Msa0143300-mRNA-1:exon:889;Parent=Msa0143300-mRNA-1
chr1_4 exon 2197535 2197579 2197535 ID=Msa0143300-mRNA-1:exon:890;Parent=Msa0143300-mRNA-1
chr1_4 exon 2197673 2197741 2197673 ID=Msa0143300-mRNA-1:exon:891;Parent=Msa0143300-mRNA-1
chr1_4 exon 2198473 2198895 2198473 ID=Msa0143300-mRNA-1:exon:892;Parent=Msa0143300-mRNA-1
chr1_4 five_prime_UTR 2186457 2186563 2186457 ID=Msa0143300-mRNA-1:five_prime_utr;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2186564 2186907 2186564 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2186996 2187116 2186996 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2187331 2187390 2187331 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2187882 2187970 2187882 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2188058 2188163 2188058 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2189606 2189642 2189606 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2189741 2189892 2189741 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2190969 2191527 2190969 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2191644 2191925 2191644 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2192371 2192460 2192371 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2192575 2192720 2192575 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2193056 2193403 2193056 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2195270 2195513 2195270 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2195858 2195913 2195858 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2196375 2196455 2196375 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2197535 2197579 2197535 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2197673 2197741 2197673 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 CDS 2198473 2198652 2198473 ID=Msa0143300-mRNA-1:cds;Parent=Msa0143300-mRNA-1
chr1_4 three_prime_UTR 2198653 2198895 2198653 ID=Msa0143300-mRNA-1:three_prime_utr;Parent=Msa0143300-mRNA-1
Gene Sequence

>Msa0143300

ATGATAATTAAATTGAATACCGGTATCCATGCGCCAGATCGATCGAAACAACGCAAAACTTGGCAAACTAGCTCAGACTCTAGTAAAGCAAATAGTCCATTCCATTCCATTCCATCCATGGAGGTTTCACTCTCAGACGATCAACTTATCCTCCTCGTTTGCACCAACAGCTCGGATCATCATCCAATTGAAGAAGAGAATGAGATTCTTCTTTCAATCACCGATGTCATCGTTTCTGATTTATCAACATTTCTCAATTTTCACACCATCAAACTTCACGCACACCGCAACAGGCTCATTCACCACTCTTTGTATTTCCGAGGCCTTCTCAGTGGAAGCTTCAGTGAATCATGCTCCGCCTCCATCACTGTCAATTGGAATCTGCCTGTGTTTATGCAAATTCTTAAGCATATATATCGCTGTTCTTTGGATATTACCACTCAAAATGTCCTCCCCCTTTACGAGGGAGCACTTTATTTTGGAGTGGATACACTTATCGTAAAATGTGAGGATTGGTTTTCTGAGATGTGGGCAAAGCAGAGCAATTTTTTTGGAGAAGTTCCATATAACTTACTGTTATCTTCAGTAAAGCACCCTCATTTGACTGTTGACAGTGAGATGCATCTCTCTGATGCACTTCTTCTTTGGCTTGAAAGTAACATGGAAAATTTGGAGACGCGGAGCGAAGCAGAAGACAACTGCAATGGAATTTTAAAACAAATTCATGTGGAACTTTTGCCTTTGTGGTTTGCTGCAGGAAAAAGAAACTCTTTTTATTTTAGGCAGCTGGCTGAGGAAAGCCTTGGTTCAATTTTCAGAGCACTGAATATTCTCCCTATTGGTTCACTTGATATTTCTGGGTATAGTGACTTGCAACATCTCAGGATTCGAGTTACAGAATATTCAAAGAAAATAGACCTTTCCAATTGTCCGCAAATAACATCTGCAATACTGCTTCTGTCACTCATACCTGCATCATATCTAACGGATCCCATGCAAAGGAGGATTATAGAACAGTTCTTTATTAATTCTGGACATCCCATACAAGAGAAGTATGAATTCCCACAAAAAATGTTAGAAACCTTTATCTTTGAAGCAGTTCAGGAGGTGGATATCTCGAAGTGTCGAAGACTGTTTATTGAACATGCTGTTAATTGCTTCAGCCGGTCCTTTCCTTCCTTAAGAATCTTAAAAGCAGCTTATCTTTTAAATATCAGGACAATCAGTTTCCTTCGGTTATTGGAGAAGTGCTCTCTGGTCAACGAAGTTGACTTGACTGTCGATGTTACACCTCTAATTCCAGCATCAGTTACAGTTTTATCCTCTAGCCCTGTTGTGATACCACCGGTACCAGAGAAGACCCCAAGTCTTGAATATAAAGCAGTGGAAACCTTGTCATTTCATGAATCTAGACCTCAAATTTCTTATGTTACGAAACTCACCTTGGAGGGAAGAACTGATGTCAGTGATTTGAGCCTCCGGTACATCTCCAAATTCTTTGTTTCATTGTGTCACCTGAATATTAAAGGATGTGTTTGTGTCACTGATATTGGCATATCAGATCTCATACACAGATGTAACAAACTTAATTCGATTGTGGTCTGTGATACTTCATTTGGGATAAATTCAGTTCAAGCTCTTTGCTCAGCTATTTCTGATGGTGGCAACTTTCCCTCTTTACATTCTAGAGATATGCATTTGAATTCTGTGGTGTCTAATCTTCAAGCTCTGCATATGGGTGGCTGCATGGGGTCTAGAGCTACTTTTTGTCCTTGTGGGGACAACTCAGTGGTAACCTCAAGGGATGGTGTTCAAATCCCCTCAAGGACAGTTGTAAATGGTATTTCTGAGTTATCTCTACAAGAGCTTATGTCTCAAACACAAGTTTTGAAGAATCTATGCCTGAGAGGGACATACCTGGTTGACCAGGCACTATATAATTTCAATGGCTCTTCCTTGGAAATGCTTGATGTGTCAGACACCAAGATTTCTGAAGCTGCATTAAGTTTTGTTATTCATGGAAATCCAAGTTTGAAGAGTCTGAAAATCAGAGGTTGTAAAAATTTGTTAAAAGGAGATAGTTCTATTGAAAAGAGAGAACCTTGCTTTTCCTCCTTACATGAAGAACTGCATGCTGAGTTAGGAAAGAAGTGTAGATTGGAAGAAATTGAATTTGGTTGGGGTTTTCCTTCCTTCTCTCTAAGTGCTTTGGAACCTGCATTGACGTCATTAAAGACCATCAATGTAGGTTTAGGTGGAATGTTAGGTGAAGATGCATTGAGACAATTACCAGCAATCTGTCCCTTGCTAGAAACAATAATCCTTCATTTTCAGGTAATATCTGACATCATTGTGAGGAAATTAGTTACGTCCTTGATGAACTTACAAGTATTAGCTATGTGCTATTGTTTTGGTGATATATCCATGTCAAGCTTCAAATTCCCCATGCAAAATCTAAGAAAGTTGAGGCTTGAAAGAGTAACCCCATGGATGACAAATGATGATTTGGTTATTTTGTCTCAAAACTGTAGAAATTTGGTTGAGCTTTCATTGCTGGGCTGTCCTCTTCTTAACTCAGATTCTCAACAGATAATTTCACGTGCATGGCCAGGCTTGGTCGCTATGCATCTTGAGGAATGTGGAGAAATAACAGCAAATGGTGTCTCTGCTCTTCTTGACTGCAGAGCTCTAGAAGATCTTTTGTTGCGTCATAATGGCCTTGGGCTACAAAGAAACTTCGTTTTACATGCTGCTTCAGAGTTGCCATTGCTTCGAAAATTGTCACTGGATATATGTGATGCAATTGAAGGTGGTTTTGACATTCCAAATTATGCCGATAGATACTTTTTGAGTACCTTGAAGATAGCAAAATGCAAATCTCAAAGATGTGCATTTAATCTCCCAGTCCCCCCTCCAGGGACTCGTAGACGATCGGTGCATGTAGAAACACTGGTGCTTGTGTGGAACAGCGAAAATCTCACTAGAACAGTGGTGAAGGAAAGGCTTTAG
Protein sequence

>Msa0143300

MIIKLNTGIHAPDRSKQRKTWQTSSDSSKANSPFHSIPSMEVSLSDDQLILLVCTNSSDHHPIEEENEILLSITDVIVSDLSTFLNFHTIKLHAHRNRLIHHSLYFRGLLSGSFSESCSASITVNWNLPVFMQILKHIYRCSLDITTQNVLPLYEGALYFGVDTLIVKCEDWFSEMWAKQSNFFGEVPYNLLLSSVKHPHLTVDSEMHLSDALLLWLESNMENLETRSEAEDNCNGILKQIHVELLPLWFAAGKRNSFYFRQLAEESLGSIFRALNILPIGSLDISGYSDLQHLRIRVTEYSKKIDLSNCPQITSAILLLSLIPASYLTDPMQRRIIEQFFINSGHPIQEKYEFPQKMLETFIFEAVQEVDISKCRRLFIEHAVNCFSRSFPSLRILKAAYLLNIRTISFLRLLEKCSLVNEVDLTVDVTPLIPASVTVLSSSPVVIPPVPEKTPSLEYKAVETLSFHESRPQISYVTKLTLEGRTDVSDLSLRYISKFFVSLCHLNIKGCVCVTDIGISDLIHRCNKLNSIVVCDTSFGINSVQALCSAISDGGNFPSLHSRDMHLNSVVSNLQALHMGGCMGSRATFCPCGDNSVVTSRDGVQIPSRTVVNGISELSLQELMSQTQVLKNLCLRGTYLVDQALYNFNGSSLEMLDVSDTKISEAALSFVIHGNPSLKSLKIRGCKNLLKGDSSIEKREPCFSSLHEELHAELGKKCRLEEIEFGWGFPSFSLSALEPALTSLKTINVGLGGMLGEDALRQLPAICPLLETIILHFQVISDIIVRKLVTSLMNLQVLAMCYCFGDISMSSFKFPMQNLRKLRLERVTPWMTNDDLVILSQNCRNLVELSLLGCPLLNSDSQQIISRAWPGLVAMHLEECGEITANGVSALLDCRALEDLLLRHNGLGLQRNFVLHAASELPLLRKLSLDICDAIEGGFDIPNYADRYFLSTLKIAKCKSQRCAFNLPVPPPGTRRRSVHVETLVLVWNSENLTRTVVKERL*