AlfalfaGEDB | Msa0387590

M. sativa cultivar zhongmu-4 / Msa0387590

KEGG: K10268
GO: -
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387590	XP_003625779.2	84.941	1016	57	6	40	1002	1	973	0.0	1702

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387590	sp\|Q8S8F2\|FBL11_ARATH	44.021	970	425	9	80	1002	42	940	0.0	774

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387590	G7L600	84.941	1016	57	6	40	1002	1	973	0.0	1702

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TFs/TRs:

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Gene ID	Type	Classification
Msa0387590	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0143300	Msa0387590	0.900785	5.173612e-78	-8.615850e-47
Msa0387590	Msa1125210	0.959417	2.032900e-117	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387590	MtrunA17_Chr7g0266021	83.890	1018	65	8	40	1002	1	974	0.0	1672

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0387590	AT2G36370.1	44.021	970	425	9	80	1002	42	940	0.0	774

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Find 223 sgRNAs with CRISPR-Local

Find 815 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATCCTTTAATATTC+AGG	0.360453	3_1:+91621747	None:intergenic
AAAGCACTTAGAGAGAAGGA+AGG	0.647316	3_1:+91620178	None:intergenic
AAATATCAAGTGAACCAATA+GGG	0.471343	3_1:+91623620	None:intergenic
AAATCATCATTTGTCATCCA+TGG	0.447737	3_1:+91618022	None:intergenic
AACAGATAATTTCACGTGCA+TGG	0.545210	3_1:-91617578	Msa0387590:CDS
AACCTGTCAACAGTCAAATG+AGG	0.536573	3_1:+91625487	None:intergenic
AACTTCACGCACACCGCAAC+AGG	0.416021	3_1:-91626604	Msa0387590:CDS
AAGACCATCAATGTAGGTTT+AGG	0.343362	3_1:-91620133	Msa0387590:CDS
AAGGATTATTGTTTCTAGCA+AGG	0.512864	3_1:+91620063	None:intergenic
AAGTCTTGAATATAAAGCAG+TGG	0.643072	3_1:-91622013	Msa0387590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTCATTCTCTTCTTCAAT+TGG	+	chr3_1:91614860-91614879	None:intergenic	30.0%
TAAATCAGAAACGATGACAT+CGG	+	chr3_1:91614897-91614916	None:intergenic	30.0%
TAATTTACTACCTCGTAAAG+GGG	+	chr3_1:91615218-91615237	None:intergenic	30.0%
AAATCAGAACACTACGTTAA+TGG	+	chr3_1:91615341-91615360	None:intergenic	30.0%
TACACTTATCGTAAAATGTG+AGG	-	chr3_1:91615464-91615483	Msa0387590:intron	30.0%
TTATCGTAAAATGTGAGGAT+TGG	-	chr3_1:91615469-91615488	Msa0387590:intron	30.0%
GTATTTGCGTTAATGGAAAT+TGG	+	chr3_1:91615518-91615537	None:intergenic	30.0%
TCCATTAACGCAAATACAAA+TGG	-	chr3_1:91615521-91615540	Msa0387590:intron	30.0%
TCCATTTGTATTTGCGTTAA+TGG	+	chr3_1:91615525-91615544	None:intergenic	30.0%
ATTAACGCAAATACAAATGG+AGG	-	chr3_1:91615524-91615543	Msa0387590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	91614567	91627004	91614567	ID=Msa0387590;Name=Msa0387590
chr3_1	mRNA	91614567	91627004	91614567	ID=Msa0387590-mRNA-1;Parent=Msa0387590;Name=Msa0387590-mRNA-1;_AED=0.17;_eAED=0.17;_QI=107\|0.82\|0.88\|1\|1\|1\|18\|243\|1002
chr3_1	exon	91614567	91614989	91614567	ID=Msa0387590-mRNA-1:exon:25555;Parent=Msa0387590-mRNA-1
chr3_1	exon	91615723	91615791	91615723	ID=Msa0387590-mRNA-1:exon:25554;Parent=Msa0387590-mRNA-1
chr3_1	exon	91615885	91615929	91615885	ID=Msa0387590-mRNA-1:exon:25553;Parent=Msa0387590-mRNA-1
chr3_1	exon	91617009	91617089	91617009	ID=Msa0387590-mRNA-1:exon:25552;Parent=Msa0387590-mRNA-1
chr3_1	exon	91617551	91617606	91617551	ID=Msa0387590-mRNA-1:exon:25551;Parent=Msa0387590-mRNA-1
chr3_1	exon	91617951	91618194	91617951	ID=Msa0387590-mRNA-1:exon:25550;Parent=Msa0387590-mRNA-1
chr3_1	exon	91620054	91620401	91620054	ID=Msa0387590-mRNA-1:exon:25549;Parent=Msa0387590-mRNA-1
chr3_1	exon	91620739	91620884	91620739	ID=Msa0387590-mRNA-1:exon:25548;Parent=Msa0387590-mRNA-1
chr3_1	exon	91620999	91621088	91620999	ID=Msa0387590-mRNA-1:exon:25547;Parent=Msa0387590-mRNA-1
chr3_1	exon	91621534	91621815	91621534	ID=Msa0387590-mRNA-1:exon:25546;Parent=Msa0387590-mRNA-1
chr3_1	exon	91621932	91622490	91621932	ID=Msa0387590-mRNA-1:exon:25545;Parent=Msa0387590-mRNA-1
chr3_1	exon	91623567	91623718	91623567	ID=Msa0387590-mRNA-1:exon:25544;Parent=Msa0387590-mRNA-1
chr3_1	exon	91623817	91623853	91623817	ID=Msa0387590-mRNA-1:exon:25543;Parent=Msa0387590-mRNA-1
chr3_1	exon	91625297	91625402	91625297	ID=Msa0387590-mRNA-1:exon:25542;Parent=Msa0387590-mRNA-1
chr3_1	exon	91625490	91625578	91625490	ID=Msa0387590-mRNA-1:exon:25541;Parent=Msa0387590-mRNA-1
chr3_1	exon	91626071	91626130	91626071	ID=Msa0387590-mRNA-1:exon:25540;Parent=Msa0387590-mRNA-1
chr3_1	exon	91626345	91626465	91626345	ID=Msa0387590-mRNA-1:exon:25539;Parent=Msa0387590-mRNA-1
chr3_1	exon	91626554	91627004	91626554	ID=Msa0387590-mRNA-1:exon:25538;Parent=Msa0387590-mRNA-1
chr3_1	five_prime_UTR	91626898	91627004	91626898	ID=Msa0387590-mRNA-1:five_prime_utr;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91626554	91626897	91626554	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91626345	91626465	91626345	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91626071	91626130	91626071	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91625490	91625578	91625490	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91625297	91625402	91625297	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91623817	91623853	91623817	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91623567	91623718	91623567	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91621932	91622490	91621932	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91621534	91621815	91621534	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91620999	91621088	91620999	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91620739	91620884	91620739	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91620054	91620401	91620054	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91617951	91618194	91617951	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91617551	91617606	91617551	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91617009	91617089	91617009	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91615885	91615929	91615885	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91615723	91615791	91615723	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	CDS	91614810	91614989	91614810	ID=Msa0387590-mRNA-1:cds;Parent=Msa0387590-mRNA-1
chr3_1	three_prime_UTR	91614567	91614809	91614567	ID=Msa0387590-mRNA-1:three_prime_utr;Parent=Msa0387590-mRNA-1

Gene Sequence

>Msa0387590

ATGATAATTAAATTGAATACCGGTATCCATGCGCCAGATCGATCGAAACAACGCAAAACTTGGCAAACTAGCTCAGACTCTAGTAAAGCAAATAGTCCATTCCATTCCATTCCATCCATGGAGGTTTCACTCTCAGACGATCAACTTATCCTCCTCGTTTGCACTAACAGCTCGGATCATCATCCAATTGAAGAAGAGAATGAGATTCTTCTTTCAATCACCGATGTCATCGTTTCTGATTTATCAACATTTCTCAATTTTCACACCATCAAACTTCACGCACACCGCAACAGGCTCATTCACCACTCTTTGTATTTCCGAGGCCTTCTCAGTGGAAGCTTCAGTGAATCATGCTCCGCCTCCATCACTGTCAATTGGAATCTGCCTGTGTTTATGCAAATTCTTAAGCATATATATCGCTGTTCTTTGGATATTACCACTCAAAATGTCCTCCCCCTTTACGAGGGAGCACTTTATTTTGGAGTGGATACACTTATCGTAAAATGTGAGGATTGGTTTTCTGAGATGTGGGCAAAGCAGAGCAATTTTTTTGGAGAAGTTCCATATAACTTACTGTTATCTTCAGTAAAGCACCCTCATTTGACTGTTGACAGTGAGATGCATCTCTCTGATGCACTTCTTCTTTGGCTTGAAAGTAACATGGAAAATTTGGAGACGCGGAGCGAAGCAGAAGACAACTGCAATGGAATTTTAAAACAAATTCATGTGGAACTTTTGCCTTTGTGGTTTGCTGCAGGAAAAAGAAACTCTTTTTATTTTAGGCAGCTGGCTGAGGAAAGCCTTGGTTCAATTTTCAGAGCACTGAATATTCTCCCTATTGGTTCACTTGATATTTCTGGGTATAGTGACTTGCAACATCTCAGGATTCGAGTTACAGAATATTCAAAGAAAATAGACCTTTCCAATTGTCCGCAAATAACATCTGCAATACTGCTTCTGTCACTCATACCTGCATCATATCTAACGGATCCCATGCAAAGGAGGATTATAGAACAGTTCTTTATTAATTCTGGACATCCCATACAAGAGAAGTATGAATTCCCACAAAAAATGTTAGAAACCTTTATCTTTGAAGCAGTTCAGGAGGTGGATATCTCGAAGTGTCGAAGACTGTTTATTGAACATGCTGTTAATTGCTTCAGCCGGTCCTTTCCTTCCTTAAGAATCTTAAAAGCAGCTTATCTTTTAAATATCAGGACAATCAGTTTCCTTCGGTTATTGGAGAAGTGCTCTCTGGTCAACGAAGTTGACTTGACTGTCGATGTTACACCTCTAATTCCAGCATCAGTTACAGTTTTATCCTCTAGCCCTGTTGTGATACCACCGGTACCAGAGAAGACCCCAAGTCTTGAATATAAAGCAGTGGAAACCTTGTCATTTCATGAATCTAGACCTCAAATTTCTTATGTTACGAAACTCACCTTGGAGGGAAGAACTGATGTCAGTGATTTGAGCCTCCGGTACATCTCCAAATTCTTTGTTTCATTGTGTCACCTGAATATTAAAGGATGTGTTTGTGTCACTGATATTGGCATATCAGATCTCATACACAGATGTAACAAACTTAATTCGATTGTGGTCTGTGATACTTCATTTGGGATAAATTCAGTTCAAGCTCTTTGCTCAGCTATTTCTGATGGTGGCAACTTTCCCTCTTTACATTCTAGAGATATGCATTTGAATTCTGTGGTGTCTAATCTTCAAGCTCTGCATATGGGTGGCTGCATGGGGTCTAGAGCTACTTTTTGTCCTTGTGGGGACAACTCAGTGGTAACCTCAAGGGATGGTGTTCAAATCCCCTCAAGGACAGTTGTAAATGGTATTTCTGAGTTATCTCTACAAGAGCTTATGTCTCAAACACAAGTTTTGAAGAATCTATGCCTGAGAGGGACATACCTGGTTGACCAGGCACTATATAATTTCAATGGCTCTTCCTTGGAAATGCTTGATGTGTCAGACACCAAGATTTCTGAAGCTGCATTAAGTTTTGTTATTCATGGAAATCCAAGTTTGAAGAGTCTGAAAATCAGAGGTTGTAAAAATTTGTTAAAAGGAGATAGTTCTATTGAAAAGAGAGAACCTTGCTTTTCCTCCTTACATGAAGAACTGCATGCTGAGTTAGGAAAGAAGTGTAGATTGGAAGAAATTGAATTTGGTTGGGGTTTTCCTTCCTTCTCTCTAAGTGCTTTGGAACCTGCATTGACGTCATTAAAGACCATCAATGTAGGTTTAGGTGGAATGTTAGGTGAAGATGCATTGAGACAATTACCAGCAATCTGTCCCTTGCTAGAAACAATAATCCTTCATTTTCAGGTAATATCTGACATCATTGTGAGGAAATTAGTTACGTCCTTGATGAACTTACAAGTATTAGCTATGTGCTATTGTTTTGGTGATATATCCATGTCAAGCTTCAAATTCCCCATGCAAAATCTAAGAAAGTTGAGGCTTGAAAGAGTAACCCCATGGATGACAAATGATGATTTGGTTATTTTGTCTCAAAACTGTAGAAATTTGGTTGAGCTTTCATTGCTGGGCTGTCCTCTTCTTAACTCAGATTCTCAACAGATAATTTCACGTGCATGGCCAGGCTTGGTCGCTATGCATCTTGAGGAATGTGGAGAAATAACAGCAAATGGTGTCTCTGCTCTTCTTGACTGCAGAGCTCTAGAAGATCTTTTGTTGCGTCATAATGGCCTTGGGCTACAAAGAAACTTCGTTTTACATGCTGCTTCAGAGTTGCCATTGCTTCGAAAATTGTCACTGGATATATGTGATGCAATTGAAGGTGGTTTTGACATTCCAAATTATGCCGATAGATACTTTTTGAGTACCTTGAAGATAGCAAAATGCAAATCTCAAAGATGTGCATTTAATCTCCCAGTCCCCCCTCCAGGGACTCGTAGACGATCGGTGCATGTAGAAACACTGGTGCTTGTGTGGAACAGCGAAAATCTCACTAGAACAGTGGTGAAGGAAAGGCTTTAG

Protein sequence

>Msa0387590

MIIKLNTGIHAPDRSKQRKTWQTSSDSSKANSPFHSIPSMEVSLSDDQLILLVCTNSSDHHPIEEENEILLSITDVIVSDLSTFLNFHTIKLHAHRNRLIHHSLYFRGLLSGSFSESCSASITVNWNLPVFMQILKHIYRCSLDITTQNVLPLYEGALYFGVDTLIVKCEDWFSEMWAKQSNFFGEVPYNLLLSSVKHPHLTVDSEMHLSDALLLWLESNMENLETRSEAEDNCNGILKQIHVELLPLWFAAGKRNSFYFRQLAEESLGSIFRALNILPIGSLDISGYSDLQHLRIRVTEYSKKIDLSNCPQITSAILLLSLIPASYLTDPMQRRIIEQFFINSGHPIQEKYEFPQKMLETFIFEAVQEVDISKCRRLFIEHAVNCFSRSFPSLRILKAAYLLNIRTISFLRLLEKCSLVNEVDLTVDVTPLIPASVTVLSSSPVVIPPVPEKTPSLEYKAVETLSFHESRPQISYVTKLTLEGRTDVSDLSLRYISKFFVSLCHLNIKGCVCVTDIGISDLIHRCNKLNSIVVCDTSFGINSVQALCSAISDGGNFPSLHSRDMHLNSVVSNLQALHMGGCMGSRATFCPCGDNSVVTSRDGVQIPSRTVVNGISELSLQELMSQTQVLKNLCLRGTYLVDQALYNFNGSSLEMLDVSDTKISEAALSFVIHGNPSLKSLKIRGCKNLLKGDSSIEKREPCFSSLHEELHAELGKKCRLEEIEFGWGFPSFSLSALEPALTSLKTINVGLGGMLGEDALRQLPAICPLLETIILHFQVISDIIVRKLVTSLMNLQVLAMCYCFGDISMSSFKFPMQNLRKLRLERVTPWMTNDDLVILSQNCRNLVELSLLGCPLLNSDSQQIISRAWPGLVAMHLEECGEITANGVSALLDCRALEDLLLRHNGLGLQRNFVLHAASELPLLRKLSLDICDAIEGGFDIPNYADRYFLSTLKIAKCKSQRCAFNLPVPPPGTRRRSVHVETLVLVWNSENLTRTVVKERL*