AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143310 MtrunA17_Chr7g0265981 74.009 227 52 1 20 239 665 891 3.16e-108 343
Msa0143310 MtrunA17_Chr7g0265981 79.452 73 15 0 214 286 1154 1226 4.82e-33 128
Msa0143310 MtrunA17_Chr7g0265971 75.771 227 46 3 20 239 659 883 7.91e-99 317
Msa0143310 MtrunA17_Chr7g0265971 82.609 69 12 0 218 286 1164 1232 2.48e-32 126
Msa0143310 MtrunA17_Chr7g0266001 99.237 131 1 0 20 150 544 674 5.90e-86 271
Msa0143310 MtrunA17_Chr1g0171351 51.210 248 95 3 18 239 655 902 1.95e-76 254
Msa0143310 MtrunA17_Chr1g0171351 55.556 72 32 0 214 285 1165 1236 1.74e-22 97.8
Msa0143310 MtrunA17_Chr1g0198291 55.319 235 92 3 18 239 668 902 2.94e-74 247
Msa0143310 MtrunA17_Chr1g0198291 51.389 72 35 0 214 285 1165 1236 1.27e-19 89.4
Msa0143310 MtrunA17_Chr7g0265961 52.252 222 63 2 18 239 661 839 5.92e-68 229
Msa0143310 MtrunA17_Chr7g0265961 52.564 78 36 1 214 291 1085 1161 5.05e-20 90.5
Msa0143310 MtrunA17_Chr7g0261981 42.791 215 104 5 18 219 641 849 4.59e-51 181
Msa0143310 MtrunA17_Chr7g0261981 52.941 68 32 0 218 285 1136 1203 1.59e-17 83.2
Msa0143310 MtrunA17_Chr4g0062871 39.732 224 129 4 20 239 631 852 9.72e-51 180
Msa0143310 MtrunA17_Chr4g0062871 42.000 100 55 2 182 281 1086 1182 6.98e-15 75.1
Msa0143310 MtrunA17_Chr7g0261971 41.379 232 101 6 18 219 637 863 2.38e-50 179
Msa0143310 MtrunA17_Chr7g0261971 43.396 106 53 3 182 285 1117 1217 1.37e-17 83.6
Msa0143310 MtrunA17_Chr1g0148841 40.851 235 108 5 20 229 647 875 4.00e-50 178
Msa0143310 MtrunA17_Chr1g0148841 55.556 63 28 0 218 280 1152 1214 7.85e-16 78.2
Msa0143310 MtrunA17_Chr1g0148811 39.506 243 129 4 10 239 625 862 7.73e-50 177
Msa0143310 MtrunA17_Chr1g0148811 50.725 69 34 0 218 286 1129 1197 2.80e-16 79.3
Msa0143310 MtrunA17_Chr7g0261951 39.224 232 106 6 18 219 641 867 2.34e-48 173
Msa0143310 MtrunA17_Chr7g0261951 52.941 68 32 0 218 285 1154 1221 1.12e-17 83.6
Msa0143310 MtrunA17_Chr7g0262231 37.891 256 120 6 18 239 641 891 9.13e-48 171
Msa0143310 MtrunA17_Chr7g0262231 50.794 63 31 0 218 280 1158 1220 1.01e-13 71.6
Msa0143310 MtrunA17_Chr3g0104621 38.710 248 117 4 18 239 534 772 1.25e-47 171
Msa0143310 MtrunA17_Chr7g0262241 40.086 232 104 6 18 219 641 867 1.07e-46 168
Msa0143310 MtrunA17_Chr7g0262241 54.412 68 31 0 218 285 1155 1222 2.28e-17 82.8
Msa0143310 MtrunA17_Chr4g0003971 44.000 200 84 4 20 219 642 813 7.74e-46 166
Msa0143310 MtrunA17_Chr4g0003971 52.941 68 32 0 218 285 1100 1167 1.83e-15 77.0
Msa0143310 MtrunA17_Chr2g0332241 37.555 229 128 3 17 239 645 864 1.32e-45 165
Msa0143310 MtrunA17_Chr2g0332241 57.353 68 29 0 218 285 1131 1198 1.59e-18 86.3
Msa0143310 MtrunA17_Chr2g0332211 37.662 231 127 3 17 239 726 947 1.84e-45 164
Msa0143310 MtrunA17_Chr2g0332211 54.412 68 31 0 218 285 1214 1281 3.06e-17 82.4
Msa0143310 MtrunA17_Chr4g0003981 44.550 211 96 5 20 219 654 854 2.15e-45 164
Msa0143310 MtrunA17_Chr4g0003981 55.882 68 30 0 218 285 1141 1208 2.98e-17 82.4
Msa0143310 MtrunA17_Chr7g0262261 39.252 214 104 4 18 229 612 801 5.67e-45 163
Msa0143310 MtrunA17_Chr7g0262261 54.839 62 28 0 218 279 1090 1151 1.25e-14 74.7
Msa0143310 MtrunA17_Chr2g0332221 37.118 229 128 3 17 239 645 863 1.06e-44 162
Msa0143310 MtrunA17_Chr2g0332221 57.353 68 29 0 218 285 1130 1197 1.46e-18 86.3
Msa0143310 MtrunA17_Chr4g0004021 40.260 231 116 4 20 239 652 871 2.87e-44 161
Msa0143310 MtrunA17_Chr4g0004021 50.000 68 34 0 218 285 1138 1205 1.02e-14 74.7
Msa0143310 MtrunA17_Chr3g0138261 35.918 245 139 3 10 239 637 878 4.31e-44 160
Msa0143310 MtrunA17_Chr3g0138261 57.353 68 29 0 218 285 1145 1212 4.08e-17 82.0
Msa0143310 MtrunA17_Chr7g0262221 36.864 236 102 5 18 221 624 844 1.18e-43 159
Msa0143310 MtrunA17_Chr7g0262221 45.333 75 41 0 218 292 1129 1203 2.35e-15 76.6
Msa0143310 MtrunA17_Chr5g0429871 40.000 220 102 5 13 219 453 655 2.04e-42 155
Msa0143310 MtrunA17_Chr8g0390461 51.034 145 60 3 67 201 1 144 2.11e-41 141
Msa0143310 MtrunA17_Chr7g0262251 36.036 222 116 4 20 239 638 835 1.32e-40 150
Msa0143310 MtrunA17_Chr7g0262251 46.667 75 40 0 218 292 1102 1176 8.51e-16 78.2
Msa0143310 MtrunA17_Chr4g0069211 35.565 239 131 7 3 227 614 843 3.18e-39 146
Msa0143310 MtrunA17_Chr0c20g0493841 35.565 239 131 7 3 227 626 855 3.75e-39 146
Msa0143310 MtrunA17_Chr0c20g0493841 43.836 73 41 0 213 285 1128 1200 4.98e-16 78.6
Msa0143310 MtrunA17_Chr8g0340651 31.783 258 139 5 18 239 657 913 2.16e-38 144
Msa0143310 MtrunA17_Chr8g0340651 50.000 64 32 0 218 281 1180 1243 5.52e-14 72.4
Msa0143310 MtrunA17_Chr2g0331081 33.061 245 138 3 18 239 658 899 8.63e-38 142
Msa0143310 MtrunA17_Chr2g0331081 46.377 69 37 0 217 285 1165 1233 9.77e-15 74.7
Msa0143310 MtrunA17_Chr7g0265991 87.671 73 9 0 214 286 341 413 3.23e-37 140
Msa0143310 MtrunA17_Chr7g0265991 71.642 67 19 0 173 239 1 67 2.04e-23 100
Msa0143310 MtrunA17_Chr7g0262321 34.615 234 123 5 18 239 361 576 1.06e-34 133
Msa0143310 MtrunA17_Chr7g0262321 48.529 68 35 0 218 285 842 909 1.79e-14 73.9
Msa0143310 MtrunA17_Chr4g0069221 43.836 73 41 0 213 285 73 145 5.76e-16 77.4
Msa0143310 MtrunA17_Chr7g0215001 50.794 63 31 0 218 280 128 190 8.68e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143310 AT1G66950.1 57.339 218 79 3 18 229 669 878 2.93e-77 256
Msa0143310 AT1G66950.1 64.384 73 26 0 214 286 1151 1223 3.41e-24 103
Msa0143310 AT2G36380.1 53.394 221 84 2 18 229 667 877 3.63e-74 248
Msa0143310 AT2G36380.1 58.333 72 30 0 214 285 1150 1221 4.05e-20 91.3
Msa0143310 AT1G15520.1 43.000 200 105 3 20 219 650 840 2.13e-48 173
Msa0143310 AT1G15520.1 56.164 73 32 0 214 286 1123 1195 5.24e-20 90.9
Msa0143310 AT1G15520.2 43.000 200 105 3 20 219 650 840 2.21e-48 173
Msa0143310 AT1G15520.2 56.164 73 32 0 214 286 1123 1195 5.14e-20 90.9
Msa0143310 AT2G29940.1 41.706 211 107 5 18 227 655 850 7.69e-47 169
Msa0143310 AT2G26910.1 41.038 212 104 4 20 219 631 833 1.15e-45 166
Msa0143310 AT2G26910.1 39.216 102 60 1 184 285 1088 1187 1.75e-14 74.3
Msa0143310 AT2G37280.1 31.364 220 142 4 22 239 636 848 3.45e-35 135
Msa0143310 AT2G37280.4 31.364 220 142 4 22 239 478 690 3.63e-35 135
Msa0143310 AT2G37280.3 31.364 220 142 4 22 239 665 877 3.81e-35 135
Msa0143310 AT1G15210.1 36.150 213 105 5 18 219 663 855 4.27e-35 135
Msa0143310 AT1G15210.1 41.558 77 45 0 218 294 1142 1218 4.76e-12 67.0
Msa0143310 AT2G37280.2 31.364 220 142 4 22 239 636 848 4.72e-35 135
Msa0143310 AT3G16340.1 34.906 212 121 4 20 229 643 839 7.61e-35 134
Msa0143310 AT3G16340.1 47.222 72 38 0 214 285 1112 1183 3.13e-14 73.6
Msa0143310 AT3G16340.2 34.906 212 121 4 20 229 638 834 8.21e-35 134
Msa0143310 AT3G16340.2 47.222 72 38 0 214 285 1107 1178 3.21e-14 73.6
Msa0143310 AT3G53480.1 29.482 251 149 6 4 239 648 885 7.46e-33 128
Msa0143310 AT3G30842.1 28.512 242 145 5 12 239 629 856 1.84e-30 121
Msa0143310 AT3G30842.1 45.833 72 39 0 214 285 1119 1190 2.96e-16 79.7
Msa0143310 AT1G59870.1 33.790 219 127 3 18 219 665 882 4.61e-30 120
Msa0143310 AT1G59870.1 46.875 64 34 0 218 281 1169 1232 9.82e-12 66.2
Msa0143310 AT4G15233.1 32.877 219 123 4 3 216 613 812 3.28e-29 117
Msa0143310 AT4G15233.8 32.877 219 123 4 3 216 604 803 3.41e-29 117
Msa0143310 AT4G15233.2 32.877 219 123 4 3 216 613 812 3.44e-29 117
Msa0143310 AT4G15233.7 32.877 219 123 4 3 216 595 794 3.63e-29 117
Msa0143310 AT4G15233.3 32.877 219 123 4 3 216 551 750 3.75e-29 117
Msa0143310 AT4G15233.6 32.877 219 123 4 3 216 551 750 3.75e-29 117
Msa0143310 AT4G15230.3 33.846 195 117 4 22 216 638 820 6.50e-28 114
Msa0143310 AT4G15230.1 33.846 195 117 4 22 216 638 820 6.50e-28 114
Msa0143310 AT4G15230.4 33.846 195 117 4 22 216 559 741 6.61e-28 114
Msa0143310 AT4G15230.2 33.846 195 117 4 22 216 638 820 7.14e-28 114
Msa0143310 AT4G15236.1 32.308 195 113 3 22 216 635 810 3.01e-27 112
Msa0143310 AT4G15215.11 30.476 210 128 4 22 231 635 826 1.23e-26 110
Msa0143310 AT4G15215.9 30.476 210 128 4 22 231 632 823 1.28e-26 110
Msa0143310 AT4G15215.4 30.476 210 128 4 22 231 632 823 1.28e-26 110
Msa0143310 AT4G15215.5 30.476 210 128 4 22 231 632 823 1.28e-26 110
Msa0143310 AT4G15215.3 30.476 210 128 4 22 231 632 823 1.28e-26 110
Msa0143310 AT4G15215.2 30.476 210 128 4 22 231 632 823 1.28e-26 110
Msa0143310 AT4G15215.1 30.476 210 128 4 22 231 628 819 1.37e-26 110
Msa0143310 AT4G15215.8 30.476 210 128 4 22 231 625 816 1.47e-26 110
Msa0143310 AT4G15215.10 30.476 210 128 4 22 231 625 816 1.47e-26 110
Msa0143310 AT4G15215.6 30.476 210 128 4 22 231 625 816 1.47e-26 110
Msa0143310 AT4G15215.7 30.476 210 128 4 22 231 625 816 1.47e-26 110
Msa0143310 AT4G15233.5 37.255 153 87 2 3 150 533 681 3.22e-24 103
Msa0143310 AT4G15233.4 37.255 153 87 2 3 150 533 681 3.22e-24 103

Find 103 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTCTTGAAACAAAATT+TGG 0.112664 1_4:+2216826 Msa0143310:three_prime_UTR
TCAATTCTTGTGTCTGTATT+TGG 0.174535 1_4:-2210576 None:intergenic
TATCATTCGGTCTAATATTT+TGG 0.191198 1_4:+2215581 Msa0143310:CDS
CATTAATTGCTATGGCATTC+TGG 0.233682 1_4:-2210372 None:intergenic
CACCTAGTTGTGAGGTTATA+AGG 0.241811 1_4:-2216754 None:intergenic
ATGAAGGCTATTGCATTATC+AGG 0.268066 1_4:+2208421 Msa0143310:CDS
CCATTCCTCTTCTCGATTCA+TGG 0.274451 1_4:-2213646 None:intergenic
ACATCAAGCCATGGATGATA+TGG 0.276467 1_4:+2210320 Msa0143310:CDS
AAGTACAACTCCTTCGAATT+TGG 0.279548 1_4:-2215433 None:intergenic
TTAAGCTGATATACATGATT+TGG 0.286705 1_4:-2216974 None:intergenic
CGACCTTCTTTATGACTCTT+TGG 0.290161 1_4:+2216420 Msa0143310:three_prime_UTR
CCCATTGCATGGACACTATA+TGG 0.293555 1_4:+2216731 Msa0143310:three_prime_UTR
GCTTGTTTACAGAAGATTAT+TGG 0.295339 1_4:+2210637 Msa0143310:CDS
GGAAGGCGGCGAACTTCTTA+TGG 0.297790 1_4:+2216300 Msa0143310:three_prime_UTR
AGATGGCTCTTTCTTTATTT+CGG 0.300502 1_4:+2210071 Msa0143310:intron
GGTAGATCACATACCGTCTT+AGG 0.307000 1_4:-2216467 None:intergenic
TTTATGTACTTCAAATTGTT+TGG 0.326721 1_4:+2216347 Msa0143310:three_prime_UTR
CTAATCCTTTACTCCATGAT+TGG 0.327904 1_4:+2216269 Msa0143310:exon
GCATTCTGGCCATACATTAT+AGG 0.336967 1_4:-2210358 None:intergenic
TATGGTGGAGATGGTACTAT+TGG 0.341651 1_4:+2216702 Msa0143310:three_prime_UTR
GGAAACAAAATCTGTCCTAT+TGG 0.358578 1_4:+2215506 Msa0143310:CDS
TTACAGAAGATTATTGGTAT+TGG 0.359125 1_4:+2210643 Msa0143310:CDS
CGATTCATGGTTAGATGAAC+TGG 0.360269 1_4:-2213633 None:intergenic
AACATAATCAGTTACAAAAC+TGG 0.372132 1_4:-2208452 None:intergenic
GACAATGAATTTGAAACAAC+TGG 0.373261 1_4:-2210118 None:intergenic
GTAAAGGATTAGTGTGTAAA+TGG 0.376075 1_4:-2216258 None:intergenic
TTCAATACAAAGCTAACTTC+TGG 0.376854 1_4:+2215485 Msa0143310:CDS
TTGCTGTTGCTCATATAGGC+TGG 0.384741 1_4:+2216876 Msa0143310:three_prime_UTR
ATCTGCATTGGAGCCTTGAT+TGG 0.387779 1_4:+2210666 Msa0143310:CDS
ACCGTTTCAACCACTTTCAA+TGG 0.392548 1_4:+2213673 Msa0143310:CDS
TGATACAGCAAATACCTATA+TGG 0.392550 1_4:+2216684 Msa0143310:intron
ATGAATTCTTAGACAAAAGA+TGG 0.392823 1_4:+2210392 Msa0143310:CDS
AGTTCCATGCTTCCAGCTCC+TGG 0.403220 1_4:-2216800 None:intergenic
GAATTCTTGAAACAAAATTT+GGG 0.403642 1_4:+2216827 Msa0143310:three_prime_UTR
CAAGTTGCTGTTGCTCATAT+AGG 0.408915 1_4:+2216872 Msa0143310:three_prime_UTR
ACTCTTTGGAACTTGTTCTC+TGG 0.416623 1_4:+2216434 Msa0143310:three_prime_UTR
AATGATTGAGAATATTTGGT+TGG 0.425570 1_4:-2215457 None:intergenic
AGCTGGAAGCATGGAACTAA+AGG 0.437969 1_4:+2216805 Msa0143310:three_prime_UTR
ACTCCATGATTGGGTTTGAA+TGG 0.442009 1_4:+2216279 Msa0143310:three_prime_UTR
TTTGTAGTGGTATTTGTGCT+AGG 0.448154 1_4:+2210151 Msa0143310:CDS
TATATATCTCCTATAATGTA+TGG 0.458421 1_4:+2210349 Msa0143310:CDS
TGGCTAAGGTCATGAGAAAT+CGG 0.458914 1_4:-2215552 None:intergenic
CATAAAGAAGGTCGTAGAAA+TGG 0.461515 1_4:-2216411 None:intergenic
ATGATTGAGAATATTTGGTT+GGG 0.462037 1_4:-2215456 None:intergenic
CATCAAGCCATGGATGATAT+GGG 0.465370 1_4:+2210321 Msa0143310:CDS
TGCTGTTGCTCATATAGGCT+GGG 0.467609 1_4:+2216877 Msa0143310:three_prime_UTR
TAATCCTTTACTCCATGATT+GGG 0.470968 1_4:+2216270 Msa0143310:exon
TATTGGTATTGGATCTGCAT+TGG 0.472608 1_4:+2210654 Msa0143310:CDS
ACAAAAGATACAAACCTTCA+AGG 0.477377 1_4:-2213298 None:intergenic
TAAGAATTCATTAATTGCTA+TGG 0.477715 1_4:-2210380 None:intergenic
CAAAAGATACAAACCTTCAA+GGG 0.479569 1_4:-2213297 None:intergenic
ATGGTGGAGATGGTACTATT+GGG 0.479665 1_4:+2216703 Msa0143310:three_prime_UTR
CCATATAGTGTCCATGCAAT+GGG 0.480313 1_4:-2216731 None:intergenic
TAGTACCATCTCCACCATAT+AGG 0.481162 1_4:-2216698 None:intergenic
AACTCCTTCGAATTTGGTGC+TGG 0.491302 1_4:-2215427 None:intergenic
TTAGCCATTGGAGTATCATT+CGG 0.492648 1_4:+2215568 Msa0143310:CDS
ATCTTCTGTAAACAAGCCTC+TGG 0.493833 1_4:-2210631 None:intergenic
GCCATTGAAAGTGGTTGAAA+CGG 0.495122 1_4:-2213674 None:intergenic
GCCATATAGTGTCCATGCAA+TGG 0.495949 1_4:-2216732 None:intergenic
CAAACCCAATCATGGAGTAA+AGG 0.497078 1_4:-2216274 None:intergenic
TTTCGGTTCGTTGCTGCAGT+TGG 0.498360 1_4:+2210088 Msa0143310:CDS
GTATTGAGAATGTCTCCAAT+AGG 0.500471 1_4:-2215521 None:intergenic
TGTAACTGATTATGTTCTCA+AGG 0.505506 1_4:+2208459 Msa0143310:CDS
TTTCTCATGACCTTAGCCAT+TGG 0.507382 1_4:+2215556 Msa0143310:CDS
GAGAAGAGAAAATCCAATCA+AGG 0.509995 1_4:-2210679 None:intergenic
GTCTATGTTGATCTTTGTAG+TGG 0.512990 1_4:+2210138 Msa0143310:CDS
TCAATGAGAGGATGAAGAGA+AGG 0.514001 1_4:-2210707 None:intergenic
CATGATTGGGTTTGAATGGA+AGG 0.519186 1_4:+2216283 Msa0143310:three_prime_UTR
AGAATTGATGCACCGACAGT+TGG 0.527068 1_4:+2210591 Msa0143310:CDS
CTTCCATTCAAACCCAATCA+TGG 0.527496 1_4:-2216282 None:intergenic
TGGCTTTCTCATTCCTAAGA+CGG 0.546750 1_4:+2216454 Msa0143310:three_prime_UTR
GAAATAGTGATACCAGGAGC+TGG 0.551466 1_4:+2216788 Msa0143310:three_prime_UTR
GGAGGTTTCATTATTGCCAA+AGG 0.552724 1_4:+2210172 Msa0143310:CDS
ATTGGGCTTCTCCCATTGCA+TGG 0.553135 1_4:+2216720 Msa0143310:three_prime_UTR
GTTCCAAAGAGTCATAAAGA+AGG 0.566221 1_4:-2216423 None:intergenic
AAATACCTATATGGTGGAGA+TGG 0.568001 1_4:+2216693 Msa0143310:three_prime_UTR
ATGGCGGCAACATCGAGGCT+TGG 0.573131 1_4:-2216392 None:intergenic
TAATAGCCCCATATCATCCA+TGG 0.574695 1_4:-2210328 None:intergenic
GAATGATACTCCAATGGCTA+AGG 0.580810 1_4:-2215566 None:intergenic
CCATGAATCGAGAAGAGGAA+TGG 0.582957 1_4:+2213646 Msa0143310:CDS
GATACCAGGAGCTGGAAGCA+TGG 0.585002 1_4:+2216796 Msa0143310:three_prime_UTR
GTAGTGGTATTTGTGCTAGG+AGG 0.589574 1_4:+2210154 Msa0143310:CDS
TGATTGAATGCCATTGAAAG+TGG 0.595744 1_4:-2213683 None:intergenic
TCTAACCATGAATCGAGAAG+AGG 0.600171 1_4:+2213641 Msa0143310:CDS
TACTCCAGCACCAAATTCGA+AGG 0.604588 1_4:+2215423 Msa0143310:CDS
GGCCTTATAACCTCACAACT+AGG 0.607702 1_4:+2216752 Msa0143310:three_prime_UTR
GATGAAGATGACAAGAACAA+TGG 0.613698 1_4:+2213251 Msa0143310:CDS
ATGCAAACACAAATGCAAAG+AGG 0.626053 1_4:-2216904 None:intergenic
TACAGCAAATACCTATATGG+TGG 0.633094 1_4:+2216687 Msa0143310:intron
AAAAGATACAAACCTTCAAG+GGG 0.633579 1_4:-2213296 None:intergenic
ATATGAGCAACAGCAACTTG+AGG 0.642508 1_4:-2216869 None:intergenic
ATCAAGCCATGGATGATATG+GGG 0.644621 1_4:+2210322 Msa0143310:CDS
GATTCAAATAAGTCAATGAG+AGG 0.647301 1_4:-2210719 None:intergenic
AATACAGAAATAGTGATACC+AGG 0.650365 1_4:+2216782 Msa0143310:three_prime_UTR
AAAGAAGGTCGTAGAAATGG+CGG 0.651076 1_4:-2216408 None:intergenic
TGGAGACATTCTCAATACAA+TGG 0.652813 1_4:+2215526 Msa0143310:CDS
GATTGGGTTTGAATGGAAGG+CGG 0.665897 1_4:+2216286 Msa0143310:three_prime_UTR
TAGACCGAATGATACTCCAA+TGG 0.670218 1_4:-2215572 None:intergenic
AAAGTACTTCTCAAAGCCAG+AGG 0.677875 1_4:+2210615 Msa0143310:CDS
TAGAAATGGCGGCAACATCG+AGG 0.692415 1_4:-2216397 None:intergenic
TTGTAGATGACATCAAGCCA+TGG 0.723693 1_4:+2210311 Msa0143310:intron
AAAGATACAAACCTTCAAGG+GGG 0.776185 1_4:-2213295 None:intergenic
TGATTCGAAAGCAGTCACTG+CGG 0.777433 1_4:+2213229 Msa0143310:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATACTAATATAGTAAT+AGG - chr1_4:2208519-2208538 None:intergenic 10.0%
!!! ATCATATATTATTTTTTACA+TGG - chr1_4:2213024-2213043 None:intergenic 10.0%
!!! ATACATAAAAAAAAAGTATA+TGG - chr1_4:2215942-2215961 None:intergenic 10.0%
!! TGTTTAATATGTTAAATTGT+TGG - chr1_4:2208940-2208959 None:intergenic 15.0%
!! AAAAATATGGTATTTCAAAT+TGG + chr1_4:2209514-2209533 Msa0143310:intron 15.0%
!!! TTCTTACATATTTTACAATT+GGG + chr1_4:2209892-2209911 Msa0143310:intron 15.0%
!! ATAACAACAGTAAATAATAT+TGG - chr1_4:2210498-2210517 None:intergenic 15.0%
!! TATTTCAAAGATATGAAAAT+AGG + chr1_4:2213045-2213064 Msa0143310:intron 15.0%
!!! GTATCTTTTGTAATATATTT+CGG + chr1_4:2213310-2213329 Msa0143310:intron 15.0%
!! TCTTAATCATAAATAATTAG+TGG - chr1_4:2213573-2213592 None:intergenic 15.0%
!! AATTATTTATGATTAAGAAC+AGG + chr1_4:2213575-2213594 Msa0143310:intron 15.0%
!! TATATGTTTATCAAAATTGT+CGG + chr1_4:2214094-2214113 Msa0143310:intron 15.0%
!!! ATTTTTGCTTAACAAATTTT+TGG + chr1_4:2215717-2215736 Msa0143310:intron 15.0%
!!! AAAACAAAATGAAATTTGTT+AGG - chr1_4:2216156-2216175 None:intergenic 15.0%
!!! ACTCTTTCTTTTTTTAAAAT+TGG + chr1_4:2216528-2216547 Msa0143310:intron 15.0%
!!! AATCTATATGCTTCTATTTT+AGG + chr1_4:2208536-2208555 Msa0143310:intron 20.0%
!!! ATCTATATGCTTCTATTTTA+GGG + chr1_4:2208537-2208556 Msa0143310:intron 20.0%
!!! TTGGATTTTATATTGTTAAC+AGG + chr1_4:2208796-2208815 Msa0143310:intron 20.0%
!! TTCTTTCATTCATTTCATAT+TGG + chr1_4:2209420-2209439 Msa0143310:intron 20.0%
!! TTCAAATTGGAAACTATTTA+AGG + chr1_4:2209527-2209546 Msa0143310:intron 20.0%
!!! GTTCTTACATATTTTACAAT+TGG + chr1_4:2209891-2209910 Msa0143310:intron 20.0%
!!! TTTTATCGAACTACATATAT+AGG + chr1_4:2209950-2209969 Msa0143310:intron 20.0%
!! TATATATCTCCTATAATGTA+TGG + chr1_4:2210349-2210368 Msa0143310:CDS 20.0%
!! TAAGAATTCATTAATTGCTA+TGG - chr1_4:2210383-2210402 None:intergenic 20.0%
!! TTGTTTGTATAAGTACATTA+AGG - chr1_4:2210460-2210479 None:intergenic 20.0%
!! TACTGTTGTTATATGATATA+TGG + chr1_4:2210506-2210525 Msa0143310:intron 20.0%
!! AATAATGCAGAAACTAATAT+CGG + chr1_4:2210783-2210802 Msa0143310:intron 20.0%
!! AAGAAATTCCATAACTATTA+TGG - chr1_4:2211199-2211218 None:intergenic 20.0%
!!! TAATGTAATGAATTCTAGAA+GGG + chr1_4:2212325-2212344 Msa0143310:intron 20.0%
!!! TTTTATTTCGCTAGAATTTT+TGG - chr1_4:2212596-2212615 None:intergenic 20.0%
!! AATTGTCTATTTAAGCAAAT+TGG - chr1_4:2213078-2213097 None:intergenic 20.0%
!!! TATTCTGTTATTTTACTATG+TGG + chr1_4:2213762-2213781 Msa0143310:intron 20.0%
!!! ATGATGTCTTATTAATCTAA+TGG - chr1_4:2213845-2213864 None:intergenic 20.0%
!! ATGAGATTTATCAATCTAAT+GGG + chr1_4:2213883-2213902 Msa0143310:intron 20.0%
!! ATGATAAAAGTCATAACAAT+AGG - chr1_4:2214147-2214166 None:intergenic 20.0%
!!! CTATGAATCACTATTATTTT+CGG + chr1_4:2214438-2214457 Msa0143310:intron 20.0%
!! TTGTGTATTATTTATTTCCT+TGG + chr1_4:2214918-2214937 Msa0143310:intron 20.0%
!! CAAAAATGATTGAGAATATT+TGG - chr1_4:2215464-2215483 None:intergenic 20.0%
!!! CAAATATTCTCAATCATTTT+TGG + chr1_4:2215462-2215481 Msa0143310:CDS 20.0%
!! TTTATGTACTTCAAATTGTT+TGG + chr1_4:2216347-2216366 Msa0143310:three_prime_UTR 20.0%
!! GAATTCTTGAAACAAAATTT+GGG + chr1_4:2216827-2216846 Msa0143310:three_prime_UTR 20.0%
! AACATAATCAGTTACAAAAC+TGG - chr1_4:2208455-2208474 None:intergenic 25.0%
! TTTACAAATGTGGTTATGTT+TGG - chr1_4:2208774-2208793 None:intergenic 25.0%
! ATAACCACATTTGTAAAAGT+TGG + chr1_4:2208777-2208796 Msa0143310:intron 25.0%
!! AAATCCAACTTTTACAAATG+TGG - chr1_4:2208784-2208803 None:intergenic 25.0%
! TTCAATTGTAACTTGATGTA+GGG + chr1_4:2209013-2209032 Msa0143310:intron 25.0%
! TGAAAGAAATCAACAAATTC+AGG - chr1_4:2209408-2209427 None:intergenic 25.0%
! GCATTAGTGAAAGAAAAATA+TGG + chr1_4:2209501-2209520 Msa0143310:intron 25.0%
! ATGATAAATGTGATGTTCAA+TGG + chr1_4:2209723-2209742 Msa0143310:intron 25.0%
! TGATAAATGTGATGTTCAAT+GGG + chr1_4:2209724-2209743 Msa0143310:intron 25.0%
! GTAAAAGAAGTGATCAATTA+GGG - chr1_4:2210213-2210232 None:intergenic 25.0%
! TGTAAAAGAAGTGATCAATT+AGG - chr1_4:2210214-2210233 None:intergenic 25.0%
! ATGAATTCTTAGACAAAAGA+TGG + chr1_4:2210392-2210411 Msa0143310:CDS 25.0%
! TTACAGAAGATTATTGGTAT+TGG + chr1_4:2210643-2210662 Msa0143310:CDS 25.0%
! TGAGACTATTCTAAACTTAA+TGG + chr1_4:2210839-2210858 Msa0143310:intron 25.0%
! GAGACTATTCTAAACTTAAT+GGG + chr1_4:2210840-2210859 Msa0143310:intron 25.0%
! ATGACAAATGTGTTAACAAA+TGG - chr1_4:2211020-2211039 None:intergenic 25.0%
! ATTGTCACAAACAACTTAAT+AGG + chr1_4:2211165-2211184 Msa0143310:intron 25.0%
! TTGTCACAAACAACTTAATA+GGG + chr1_4:2211166-2211185 Msa0143310:intron 25.0%
!! TAAGTTGACGTTGATTAAAT+AGG - chr1_4:2211382-2211401 None:intergenic 25.0%
!!! GTTGATGATATTATTGTCAT+AGG - chr1_4:2211784-2211803 None:intergenic 25.0%
!! TTTGTTGATTGAAGAATACA+AGG - chr1_4:2211903-2211922 None:intergenic 25.0%
! AAGATGTATATTGTTTGGAT+GGG - chr1_4:2212034-2212053 None:intergenic 25.0%
! AAAGATGTATATTGTTTGGA+TGG - chr1_4:2212035-2212054 None:intergenic 25.0%
! TTAGCTTACAAATAGAGATA+AGG + chr1_4:2212255-2212274 Msa0143310:intron 25.0%
! GTAATGTAATGAATTCTAGA+AGG + chr1_4:2212324-2212343 Msa0143310:intron 25.0%
!! AATGTAATGAATTCTAGAAG+GGG + chr1_4:2212326-2212345 Msa0143310:intron 25.0%
! TTTATCACTCATTCCTAAAT+CGG + chr1_4:2212467-2212486 Msa0143310:intron 25.0%
! AAGAAAAAAAACAGCAACAA+AGG + chr1_4:2212539-2212558 Msa0143310:intron 25.0%
! AGAAAAAAAACAGCAACAAA+GGG + chr1_4:2212540-2212559 Msa0143310:intron 25.0%
! GTAATTTAACTGACAACAAA+CGG + chr1_4:2212841-2212860 Msa0143310:intron 25.0%
! ATAGACAATTCTAAACCTAA+TGG + chr1_4:2213088-2213107 Msa0143310:intron 25.0%
! TAGACAATTCTAAACCTAAT+GGG + chr1_4:2213089-2213108 Msa0143310:intron 25.0%
! TTGGAACACTTAAATTTATC+TGG - chr1_4:2213443-2213462 None:intergenic 25.0%
! TTTATGATTAAGAACAGGTA+TGG + chr1_4:2213580-2213599 Msa0143310:intron 25.0%
! GATGAGATTTATCAATCTAA+TGG + chr1_4:2213882-2213901 Msa0143310:intron 25.0%
! TTCAATTATGCACCATAAAA+CGG + chr1_4:2213939-2213958 Msa0143310:intron 25.0%
!! GTTATGACTTTTATCATATC+AGG + chr1_4:2214150-2214169 Msa0143310:intron 25.0%
! ATGATTGAGAATATTTGGTT+GGG - chr1_4:2215459-2215478 None:intergenic 25.0%
! AATGATTGAGAATATTTGGT+TGG - chr1_4:2215460-2215479 None:intergenic 25.0%
!! TATCATTCGGTCTAATATTT+TGG + chr1_4:2215581-2215600 Msa0143310:CDS 25.0%
!! GTTCAATTTTTCCTTATCAA+TGG + chr1_4:2215644-2215663 Msa0143310:intron 25.0%
! AATATCAAACACCATTGATA+AGG - chr1_4:2215658-2215677 None:intergenic 25.0%
! TTAATGAAGTTCAATATGAC+TGG - chr1_4:2215685-2215704 None:intergenic 25.0%
!! ACAAGATCTACTAAATCTTT+TGG + chr1_4:2215752-2215771 Msa0143310:intron 25.0%
!! CAAGATCTACTAAATCTTTT+GGG + chr1_4:2215753-2215772 Msa0143310:intron 25.0%
! TTACAATCAAGAGTGAAAAA+CGG - chr1_4:2216015-2216034 None:intergenic 25.0%
!!! CAATTTATTGATAATGCAGA+TGG + chr1_4:2216202-2216221 Msa0143310:intron 25.0%
! GGAATTCTTGAAACAAAATT+TGG + chr1_4:2216826-2216845 Msa0143310:three_prime_UTR 25.0%
!! CATGTATATACTATCTTTTC+TGG - chr1_4:2216952-2216971 None:intergenic 25.0%
! TTAAGCTGATATACATGATT+TGG - chr1_4:2216977-2216996 None:intergenic 25.0%
!!! CAGTTACAAAACTGGTTTTT+TGG - chr1_4:2208447-2208466 None:intergenic 30.0%
TGTAACTGATTATGTTCTCA+AGG + chr1_4:2208459-2208478 Msa0143310:CDS 30.0%
TTATATTGTTAACAGGTGCT+TGG + chr1_4:2208803-2208822 Msa0143310:intron 30.0%
CTTCAATTGTAACTTGATGT+AGG + chr1_4:2209012-2209031 Msa0143310:intron 30.0%
TCAATTGTAACTTGATGTAG+GGG + chr1_4:2209014-2209033 Msa0143310:intron 30.0%
TTCATGGATGAAATATCAAC+AGG + chr1_4:2209066-2209085 Msa0143310:intron 30.0%
GAACTTGCATATTTCAAAAG+TGG - chr1_4:2209106-2209125 None:intergenic 30.0%
GAGACAAATGGTTCATATAA+TGG + chr1_4:2209128-2209147 Msa0143310:intron 30.0%
TCAAAAAGTTCAAATGTCTC+TGG - chr1_4:2209189-2209208 None:intergenic 30.0%
GACATTATTCTACTTTCAGA+AGG + chr1_4:2209210-2209229 Msa0143310:intron 30.0%
GAAGGTCAAATTGTATATCA+AGG + chr1_4:2209228-2209247 Msa0143310:intron 30.0%
! GTATTGTTGTTGATCTTTCT+TGG - chr1_4:2209346-2209365 None:intergenic 30.0%
AGAAAGATCAACAACAATAC+TGG + chr1_4:2209346-2209365 Msa0143310:intron 30.0%
GGAACTGAAACATATCTATA+AGG - chr1_4:2209387-2209406 None:intergenic 30.0%
TCATTCATTTCATATTGGAG+AGG + chr1_4:2209425-2209444 Msa0143310:intron 30.0%
TGGGTTTGACTCTTATTATA+AGG - chr1_4:2209474-2209493 None:intergenic 30.0%
!! ATTTAAGGCATGCTTTTCAA+AGG + chr1_4:2209542-2209561 Msa0143310:intron 30.0%
!! GTTCTTTAGAACAAAAATGC+CGG + chr1_4:2209650-2209669 Msa0143310:intron 30.0%
CAAGATGGACAAAAATTTCA+TGG + chr1_4:2209684-2209703 Msa0143310:intron 30.0%
!!! CAGATTTTTTCGACAATTCT+TGG + chr1_4:2210030-2210049 Msa0143310:intron 30.0%
ATTATTTGGCATTCATCAGA+TGG + chr1_4:2210054-2210073 Msa0143310:intron 30.0%
! AGATGGCTCTTTCTTTATTT+CGG + chr1_4:2210071-2210090 Msa0143310:intron 30.0%
! GACAATGAATTTGAAACAAC+TGG - chr1_4:2210121-2210140 None:intergenic 30.0%
! TTTTACAACACTCACTTACA+CGG + chr1_4:2210227-2210246 Msa0143310:intron 30.0%
ACTTGTTCAAACTATAGAAG+TGG - chr1_4:2210261-2210280 None:intergenic 30.0%
TCAATTCTTGTGTCTGTATT+TGG - chr1_4:2210579-2210598 None:intergenic 30.0%
GCTTGTTTACAGAAGATTAT+TGG + chr1_4:2210637-2210656 Msa0143310:CDS 30.0%
GATTCAAATAAGTCAATGAG+AGG - chr1_4:2210722-2210741 None:intergenic 30.0%
TTTCTGCATTATTCAGTTAC+AGG - chr1_4:2210776-2210795 None:intergenic 30.0%
GAATGGATATCTATCATTCT+AGG + chr1_4:2210957-2210976 Msa0143310:intron 30.0%
GAAGTTACCAATATACTATC+AGG + chr1_4:2211065-2211084 Msa0143310:intron 30.0%
AGAGAAACCTGATAGTATAT+TGG - chr1_4:2211075-2211094 None:intergenic 30.0%
TCCATAACTATTATGGATGA+AGG - chr1_4:2211192-2211211 None:intergenic 30.0%
! AGTGAGAAAGTTGATTTACT+TGG - chr1_4:2211505-2211524 None:intergenic 30.0%
AAATCAAGAGATGAACTATG+CGG - chr1_4:2211568-2211587 None:intergenic 30.0%
GAGCAATCTTAAATGAAAAC+CGG - chr1_4:2211610-2211629 None:intergenic 30.0%
! GTATATACTTGATCTTTTGC+AGG - chr1_4:2211637-2211656 None:intergenic 30.0%
TACTTCCTCGAACATTAAAA+TGG + chr1_4:2211654-2211673 Msa0143310:intron 30.0%
!! AGTTTGAGATGAAGAACTTT+TGG - chr1_4:2211727-2211746 None:intergenic 30.0%
AGAACAAAGTGTGATTTCTT+TGG + chr1_4:2211848-2211867 Msa0143310:intron 30.0%
GATTGAAGAATACAAGGTAA+TGG - chr1_4:2211897-2211916 None:intergenic 30.0%
TTAGACGAATAGGTGTATAT+GGG - chr1_4:2211967-2211986 None:intergenic 30.0%
! TACGTTTGGAGTTGATTATA+AGG - chr1_4:2212069-2212088 None:intergenic 30.0%
TGTTGAACAAACTAGTTAGA+AGG - chr1_4:2212121-2212140 None:intergenic 30.0%
CTCTATTTGTAAGCTAACAT+AGG - chr1_4:2212252-2212271 None:intergenic 30.0%
!!! TGCTGTTTTTTTTCTTTCTC+TGG - chr1_4:2212535-2212554 None:intergenic 30.0%
TACCAAAGAAAAAACTGTAG+TGG + chr1_4:2212794-2212813 Msa0143310:intron 30.0%
!!! TTCCACTACAGTTTTTTCTT+TGG - chr1_4:2212799-2212818 None:intergenic 30.0%
! AAAGAAAAAACTGTAGTGGA+AGG + chr1_4:2212798-2212817 Msa0143310:intron 30.0%
!!! TGCAGTTCTCTTTTTTTGTT+TGG - chr1_4:2212888-2212907 None:intergenic 30.0%
ACAAAAAAAGAGAACTGCAA+AGG + chr1_4:2212889-2212908 Msa0143310:intron 30.0%
CAAAAAAAGAGAACTGCAAA+GGG + chr1_4:2212890-2212909 Msa0143310:intron 30.0%
TGTCTATTTAAGCAAATTGG+TGG - chr1_4:2213075-2213094 None:intergenic 30.0%
ACCTAATGGGATAGATTAAT+AGG + chr1_4:2213102-2213121 Msa0143310:intron 30.0%
AAAAGATACAAACCTTCAAG+GGG - chr1_4:2213299-2213318 None:intergenic 30.0%
CAAAAGATACAAACCTTCAA+GGG - chr1_4:2213300-2213319 None:intergenic 30.0%
ACAAAAGATACAAACCTTCA+AGG - chr1_4:2213301-2213320 None:intergenic 30.0%
AGAAAAAAAATAGTCGCACA+TGG + chr1_4:2213510-2213529 Msa0143310:intron 30.0%
GTAAAAAATACACTTGTGCA+TGG - chr1_4:2213823-2213842 None:intergenic 30.0%
GAAGGAAATATTAGCATATC+AGG + chr1_4:2214334-2214353 Msa0143310:intron 30.0%
! CGAATGTTTCTTGATTCTTT+TGG - chr1_4:2214363-2214382 None:intergenic 30.0%
! GTTTGTTTCTTTACATCTGA+AGG - chr1_4:2214478-2214497 None:intergenic 30.0%
TGTAAAGAAACAAACTCGAA+AGG + chr1_4:2214483-2214502 Msa0143310:intron 30.0%
! GATGTTTGTTGAAGAAGTTA+TGG + chr1_4:2214597-2214616 Msa0143310:intron 30.0%
TGTATCTACTGTATTTCTCA+CGG - chr1_4:2214806-2214825 None:intergenic 30.0%
TGAGAAATACAGTAGATACA+GGG + chr1_4:2214806-2214825 Msa0143310:intron 30.0%
GCTTCAAAAATGTCTATACT+TGG - chr1_4:2214859-2214878 None:intergenic 30.0%
!!! CATTTTTGAAGCTTTTGATG+AGG + chr1_4:2214867-2214886 Msa0143310:intron 30.0%
AAGTTGCATAATTACAACAC+AGG - chr1_4:2215312-2215331 None:intergenic 30.0%
! GTTTTGTCTGTACTTTCTTT+AGG + chr1_4:2215371-2215390 Msa0143310:intron 30.0%
GAGGAATCAAGAACTTATTA+AGG + chr1_4:2215393-2215412 Msa0143310:intron 30.0%
TTCAATACAAAGCTAACTTC+TGG + chr1_4:2215485-2215504 Msa0143310:CDS 30.0%
!! TTTGATGACTTACGTCTTTT+TGG - chr1_4:2215614-2215633 None:intergenic 30.0%
!! AGTTGTTTCTATTGCAAGAA+CGG + chr1_4:2215833-2215852 Msa0143310:intron 30.0%
!!! GTTTTCATTTCTTGTTGTTG+AGG - chr1_4:2216105-2216124 None:intergenic 30.0%
! GTAAAGGATTAGTGTGTAAA+TGG - chr1_4:2216261-2216280 None:intergenic 30.0%
TAATCCTTTACTCCATGATT+GGG + chr1_4:2216270-2216289 Msa0143310:exon 30.0%
TGATACAGCAAATACCTATA+TGG + chr1_4:2216684-2216703 Msa0143310:intron 30.0%
AATACAGAAATAGTGATACC+AGG + chr1_4:2216782-2216801 Msa0143310:three_prime_UTR 30.0%
ATGAAGGCTATTGCATTATC+AGG + chr1_4:2208421-2208440 Msa0143310:CDS 35.0%
ACTTAATTGAGCTTATCTCC+TGG + chr1_4:2208572-2208591 Msa0143310:intron 35.0%
! GGATATTTGTGCTGACATTA+TGG + chr1_4:2208829-2208848 Msa0143310:intron 35.0%
! ATTTGTGCTGACATTATGGT+AGG + chr1_4:2208833-2208852 Msa0143310:intron 35.0%
CAAAAGAAGCGATTAACAAC+AGG + chr1_4:2208887-2208906 Msa0143310:intron 35.0%
GGATGAAATATCAACAGGAT+TGG + chr1_4:2209071-2209090 Msa0143310:intron 35.0%
ATGCAAGTTCATGAGACAAA+TGG + chr1_4:2209116-2209135 Msa0143310:intron 35.0%
CTGTAAAAGGGAAATGACTA+CGG - chr1_4:2209160-2209179 None:intergenic 35.0%
! AGTCATTTCCCTTTTACAGT+CGG + chr1_4:2209161-2209180 Msa0143310:intron 35.0%
TCATATTGGAGAGGAAATTG+CGG + chr1_4:2209434-2209453 Msa0143310:intron 35.0%
TTTCTTTCACTAATGCAGCT+GGG - chr1_4:2209497-2209516 None:intergenic 35.0%
! TTTTCTTTCACTAATGCAGC+TGG - chr1_4:2209498-2209517 None:intergenic 35.0%
! TTTAGAACAAAAATGCCGGT+TGG + chr1_4:2209654-2209673 Msa0143310:intron 35.0%
AAATGTGATGTTCAATGGGA+TGG + chr1_4:2209728-2209747 Msa0143310:intron 35.0%
AACTATCCATGACAGTTTCT+AGG + chr1_4:2209754-2209773 Msa0143310:intron 35.0%
TACCTGTGTTCTACAAACAA+AGG + chr1_4:2209778-2209797 Msa0143310:intron 35.0%
ACCTGTGTTCTACAAACAAA+GGG + chr1_4:2209779-2209798 Msa0143310:intron 35.0%
! ATTTCATGTTTTACCCTGCA+TGG + chr1_4:2209802-2209821 Msa0143310:intron 35.0%
! TTTCATGTTTTACCCTGCAT+GGG + chr1_4:2209803-2209822 Msa0143310:intron 35.0%
CTGATTCCAAAAAGGAAAGA+GGG - chr1_4:2209860-2209879 None:intergenic 35.0%
CGACAATTCTTGGCATTATT+TGG + chr1_4:2210040-2210059 Msa0143310:intron 35.0%
GTCTATGTTGATCTTTGTAG+TGG + chr1_4:2210138-2210157 Msa0143310:CDS 35.0%
TTTGTAGTGGTATTTGTGCT+AGG + chr1_4:2210151-2210170 Msa0143310:CDS 35.0%
GTTCAGTTACAACATACCTT+TGG - chr1_4:2210191-2210210 None:intergenic 35.0%
GTTCAAACTATAGAAGTGGT+TGG - chr1_4:2210257-2210276 None:intergenic 35.0%
CATTAATTGCTATGGCATTC+TGG - chr1_4:2210375-2210394 None:intergenic 35.0%
!!! AGAAGTACTTTTCCAACTGT+CGG - chr1_4:2210606-2210625 None:intergenic 35.0%
! TATTGGTATTGGATCTGCAT+TGG + chr1_4:2210654-2210673 Msa0143310:CDS 35.0%
GAGAAGAGAAAATCCAATCA+AGG - chr1_4:2210682-2210701 None:intergenic 35.0%
CATTATTCAGTTACAGGCAT+AGG - chr1_4:2210770-2210789 None:intergenic 35.0%
ATATCCATTCACCAGATTGA+GGG - chr1_4:2210947-2210966 None:intergenic 35.0%
!! TCATTCTAGGATTGCTAGTA+AGG + chr1_4:2210970-2210989 Msa0143310:intron 35.0%
GCCTTCATCCATAATAGTTA+TGG + chr1_4:2211188-2211207 Msa0143310:intron 35.0%
! AAGAAAGAAGAAAAGTGCAG+TGG - chr1_4:2211268-2211287 None:intergenic 35.0%
AATAAGATTCCCACACAAGA+AGG + chr1_4:2211318-2211337 Msa0143310:intron 35.0%
CATATTGTACCTTCTTGTGT+GGG - chr1_4:2211330-2211349 None:intergenic 35.0%
ACATATTGTACCTTCTTGTG+TGG - chr1_4:2211331-2211350 None:intergenic 35.0%
! CAAAGGCATATATACTGATG+AGG - chr1_4:2211422-2211441 None:intergenic 35.0%
CTCATCAGTATATATGCCTT+TGG + chr1_4:2211420-2211439 Msa0143310:intron 35.0%
! CATCTCTTGATTTTGCTCAA+CGG + chr1_4:2211575-2211594 Msa0143310:intron 35.0%
! ATCTCTTGATTTTGCTCAAC+GGG + chr1_4:2211576-2211595 Msa0143310:intron 35.0%
TGGCAACTCAAGTATTTCAT+GGG - chr1_4:2211707-2211726 None:intergenic 35.0%
TTGGCAACTCAAGTATTTCA+TGG - chr1_4:2211708-2211727 None:intergenic 35.0%
ACATATACACGAAGTACAGA+CGG + chr1_4:2211802-2211821 Msa0143310:intron 35.0%
TTGTTCTTCAAACATTCACG+AGG - chr1_4:2211835-2211854 None:intergenic 35.0%
CTTCAATCAACAAACCTTGT+TGG + chr1_4:2211909-2211928 Msa0143310:intron 35.0%
TAGACGAATAGGTGTATATG+GGG - chr1_4:2211966-2211985 None:intergenic 35.0%
CTTAGACGAATAGGTGTATA+TGG - chr1_4:2211968-2211987 None:intergenic 35.0%
GCATAGATACTTAGACGAAT+AGG - chr1_4:2211977-2211996 None:intergenic 35.0%
GGGCAAAGATGTATATTGTT+TGG - chr1_4:2212039-2212058 None:intergenic 35.0%
GTTGATTATAAGGAGCTCTA+GGG - chr1_4:2212059-2212078 None:intergenic 35.0%
AGTTGATTATAAGGAGCTCT+AGG - chr1_4:2212060-2212079 None:intergenic 35.0%
ATAATCAACTCCAAACGTAC+AGG + chr1_4:2212070-2212089 Msa0143310:intron 35.0%
TAATCAACTCCAAACGTACA+GGG + chr1_4:2212071-2212090 Msa0143310:intron 35.0%
! CAAGATCCTGAAAAGTACAA+TGG + chr1_4:2212195-2212214 Msa0143310:intron 35.0%
CATTACATTACTGTTGCTGA+TGG - chr1_4:2212315-2212334 None:intergenic 35.0%
TCACTGAAATGTCATGTGAT+CGG + chr1_4:2212371-2212390 Msa0143310:intron 35.0%
! GTGCTCTATTCTTGTTTAGA+TGG - chr1_4:2212513-2212532 None:intergenic 35.0%
!! TCGCTAGAATTTTTGGATGT+CGG - chr1_4:2212589-2212608 None:intergenic 35.0%
GAAGACAAAAATCCATTGGA+AGG + chr1_4:2212675-2212694 Msa0143310:intron 35.0%
TCTTGAGGAGATGATTCTAA+TGG + chr1_4:2212765-2212784 Msa0143310:intron 35.0%
!!! TATCACAAGCTCCCTTTTTT+GGG - chr1_4:2213001-2213020 None:intergenic 35.0%
GCCTATTAATCTATCCCATT+AGG - chr1_4:2213106-2213125 None:intergenic 35.0%
GATGAAGATGACAAGAACAA+TGG + chr1_4:2213251-2213270 Msa0143310:CDS 35.0%
AAAGATACAAACCTTCAAGG+GGG - chr1_4:2213298-2213317 None:intergenic 35.0%
!! GTGACTTGTCTTGGAATTTT+TGG - chr1_4:2213462-2213481 None:intergenic 35.0%
! TGAAGAAAAGTGACTTGTCT+TGG - chr1_4:2213471-2213490 None:intergenic 35.0%
TGATTGAATGCCATTGAAAG+TGG - chr1_4:2213686-2213705 None:intergenic 35.0%
TTTGTGCATGATGCAAGATT+TGG + chr1_4:2213916-2213935 Msa0143310:intron 35.0%
! ACATACTACAGACCGTTTTA+TGG - chr1_4:2213954-2213973 None:intergenic 35.0%
GTATGTAACTTCACCAACTA+TGG + chr1_4:2213972-2213991 Msa0143310:intron 35.0%
TAAGCTCCTAATGAGTTCAA+TGG - chr1_4:2214005-2214024 None:intergenic 35.0%
ATTAGGAGCTTAGCATTTGT+AGG + chr1_4:2214013-2214032 Msa0143310:intron 35.0%
TATCAGGAAATGAAGAGTCA+TGG + chr1_4:2214166-2214185 Msa0143310:intron 35.0%
CAACTACTACATGATGTTAG+TGG + chr1_4:2214208-2214227 Msa0143310:intron 35.0%
! ACAAGTGCTGTTAATATTCC+TGG - chr1_4:2214244-2214263 None:intergenic 35.0%
GGAATATTAACAGCACTTGT+AGG + chr1_4:2214244-2214263 Msa0143310:intron 35.0%
GTATTAGCTGGAAGAAAAAC+TGG + chr1_4:2214301-2214320 Msa0143310:intron 35.0%
! AAAACTGGTGGATACATTGA+AGG + chr1_4:2214316-2214335 Msa0143310:intron 35.0%
GATTCATAGACAGTAACATG+AGG - chr1_4:2214427-2214446 None:intergenic 35.0%
! AATCACTATTATTTTCGGCG+TGG + chr1_4:2214443-2214462 Msa0143310:intron 35.0%
TGTTGAAGAAGTTATGGAGT+TGG + chr1_4:2214603-2214622 Msa0143310:intron 35.0%
ATGGTCTATCAACAGAACAA+AGG + chr1_4:2214674-2214693 Msa0143310:intron 35.0%
ACTTAGTATTGCTGTGGAAT+TGG + chr1_4:2214702-2214721 Msa0143310:intron 35.0%
TAACCCTTCAATCATCTTCA+TGG + chr1_4:2214729-2214748 Msa0143310:intron 35.0%
CATCCATGAAGATGATTGAA+GGG - chr1_4:2214735-2214754 None:intergenic 35.0%
TCATCCATGAAGATGATTGA+AGG - chr1_4:2214736-2214755 None:intergenic 35.0%
GTGAGAAATACAGTAGATAC+AGG + chr1_4:2214805-2214824 Msa0143310:intron 35.0%
AGATATGCAATAATCGACCA+AGG - chr1_4:2214938-2214957 None:intergenic 35.0%
CTCAGGTGTTCAAAAAATCA+AGG + chr1_4:2215170-2215189 Msa0143310:intron 35.0%
GGTGTTCAAAAAATCAAGGA+TGG + chr1_4:2215174-2215193 Msa0143310:intron 35.0%
AAAAGCTTACTGGTAAAGGT+TGG - chr1_4:2215289-2215308 None:intergenic 35.0%
TTGTCTGTACTTTCTTTAGG+AGG + chr1_4:2215374-2215393 Msa0143310:intron 35.0%
AAGTACAACTCCTTCGAATT+TGG - chr1_4:2215436-2215455 None:intergenic 35.0%
GGAAACAAAATCTGTCCTAT+TGG + chr1_4:2215506-2215525 Msa0143310:CDS 35.0%
GTATTGAGAATGTCTCCAAT+AGG - chr1_4:2215524-2215543 None:intergenic 35.0%
TGGAGACATTCTCAATACAA+TGG + chr1_4:2215526-2215545 Msa0143310:CDS 35.0%
! TTAGCCATTGGAGTATCATT+CGG + chr1_4:2215568-2215587 Msa0143310:CDS 35.0%
AATAGAAACAACTGGTTGCA+CGG - chr1_4:2215826-2215845 None:intergenic 35.0%
GTTCTTGCAATAGAAACAAC+TGG - chr1_4:2215834-2215853 None:intergenic 35.0%
! TTGCAAGAACGGTTTTCTAT+CGG + chr1_4:2215844-2215863 Msa0143310:intron 35.0%
TCTGCATTATCCTATGCATT+TGG + chr1_4:2215888-2215907 Msa0143310:intron 35.0%
ATTATCCTATGCATTTGGTC+AGG + chr1_4:2215893-2215912 Msa0143310:intron 35.0%
TTATACCTGACCAAATGCAT+AGG - chr1_4:2215901-2215920 None:intergenic 35.0%
CTTGATTGTAAAATTGCACC+TGG + chr1_4:2216024-2216043 Msa0143310:intron 35.0%
CTAATCCTTTACTCCATGAT+TGG + chr1_4:2216269-2216288 Msa0143310:exon 35.0%
CATAAAGAAGGTCGTAGAAA+TGG - chr1_4:2216414-2216433 None:intergenic 35.0%
GTTCCAAAGAGTCATAAAGA+AGG - chr1_4:2216426-2216445 None:intergenic 35.0%
TACAGCAAATACCTATATGG+TGG + chr1_4:2216687-2216706 Msa0143310:intron 35.0%
! AAATACCTATATGGTGGAGA+TGG + chr1_4:2216693-2216712 Msa0143310:three_prime_UTR 35.0%
! ATTTTTGTCACCTAGTTGTG+AGG - chr1_4:2216765-2216784 None:intergenic 35.0%
ATGCAAACACAAATGCAAAG+AGG - chr1_4:2216907-2216926 None:intergenic 35.0%
!! ACTATCTTTTCTGGAAGTTG+AGG - chr1_4:2216943-2216962 None:intergenic 35.0%
AAGAACTTGCAAGACCGTTT+CGG + chr1_4:2208598-2208617 Msa0143310:intron 40.0%
GTTTCATAAGCTCTCCGAAA+CGG - chr1_4:2208615-2208634 None:intergenic 40.0%
TTGTTAACAGGTGCTTGGAT+TGG + chr1_4:2208808-2208827 Msa0143310:intron 40.0%
GTAGGTGATGAAATGAGAAG+AGG + chr1_4:2208851-2208870 Msa0143310:intron 40.0%
!! GAAATGAGAAGAGGTATCTC+CGG + chr1_4:2208860-2208879 Msa0143310:intron 40.0%
! TAATCGCTTCTTTTGTCCTC+CGG - chr1_4:2208882-2208901 None:intergenic 40.0%
!! ACCAGCAAAAGTACTGTTCA+TGG + chr1_4:2209050-2209069 Msa0143310:intron 40.0%
! TCCATGAACAGTACTTTTGC+TGG - chr1_4:2209054-2209073 None:intergenic 40.0%
GCTAGAGTTCTTCGAATACA+CGG + chr1_4:2209266-2209285 Msa0143310:intron 40.0%
CTAGAGTTCTTCGAATACAC+GGG + chr1_4:2209267-2209286 Msa0143310:intron 40.0%
! CAGCAACACATTTTCTCTCT+GGG - chr1_4:2209302-2209321 None:intergenic 40.0%
! TCAGCAACACATTTTCTCTC+TGG - chr1_4:2209303-2209322 None:intergenic 40.0%
! AGGCATGCTTTTCAAAGGAA+TGG + chr1_4:2209547-2209566 Msa0143310:intron 40.0%
AGGAATGGCTTCTTATGAAG+AGG + chr1_4:2209562-2209581 Msa0143310:intron 40.0%
! TCCCTTTGTTTGTAGAACAC+AGG - chr1_4:2209783-2209802 None:intergenic 40.0%
CGTTACCCATATGGATTCTT+AGG + chr1_4:2209832-2209851 Msa0143310:intron 40.0%
GGGATCCTAAGAATCCATAT+GGG - chr1_4:2209840-2209859 None:intergenic 40.0%
AGGGATCCTAAGAATCCATA+TGG - chr1_4:2209841-2209860 None:intergenic 40.0%
! TAGGATCCCTCTTTCCTTTT+TGG + chr1_4:2209851-2209870 Msa0143310:intron 40.0%
! GCTGATTCCAAAAAGGAAAG+AGG - chr1_4:2209861-2209880 None:intergenic 40.0%
!! CCATATCGCTGATTCCAAAA+AGG - chr1_4:2209868-2209887 None:intergenic 40.0%
!!! CCTTTTTGGAATCAGCGATA+TGG + chr1_4:2209865-2209884 Msa0143310:intron 40.0%
TCATATTACCTGCTAGCAGA+AGG - chr1_4:2209924-2209943 None:intergenic 40.0%
GGAGGTTTCATTATTGCCAA+AGG + chr1_4:2210172-2210191 Msa0143310:CDS 40.0%
TTGTAGATGACATCAAGCCA+TGG + chr1_4:2210311-2210330 Msa0143310:intron 40.0%
ACATCAAGCCATGGATGATA+TGG + chr1_4:2210320-2210339 Msa0143310:CDS 40.0%
CATCAAGCCATGGATGATAT+GGG + chr1_4:2210321-2210340 Msa0143310:CDS 40.0%
ATCAAGCCATGGATGATATG+GGG + chr1_4:2210322-2210341 Msa0143310:CDS 40.0%
TAATAGCCCCATATCATCCA+TGG - chr1_4:2210331-2210350 None:intergenic 40.0%
GCATTCTGGCCATACATTAT+AGG - chr1_4:2210361-2210380 None:intergenic 40.0%
AGGCAGTGACAAACAAGAAT+AGG - chr1_4:2210440-2210459 None:intergenic 40.0%
! AAAGTACTTCTCAAAGCCAG+AGG + chr1_4:2210615-2210634 Msa0143310:CDS 40.0%
ATCTTCTGTAAACAAGCCTC+TGG - chr1_4:2210634-2210653 None:intergenic 40.0%
TCAATGAGAGGATGAAGAGA+AGG - chr1_4:2210710-2210729 None:intergenic 40.0%
TATCCATTCACCAGATTGAG+GGG - chr1_4:2210946-2210965 None:intergenic 40.0%
GATATCCATTCACCAGATTG+AGG - chr1_4:2210948-2210967 None:intergenic 40.0%
!! TTCTAGGATTGCTAGTAAGG+TGG + chr1_4:2210973-2210992 Msa0143310:intron 40.0%
TTTGTCATCTGATTCCCAGA+AGG + chr1_4:2211032-2211051 Msa0143310:intron 40.0%
TCAGTTCATGCATGATCCAA+AGG - chr1_4:2211439-2211458 None:intergenic 40.0%
! TTTGGCTTATGCAGTTAGTG+TGG - chr1_4:2211466-2211485 None:intergenic 40.0%
TGATTTACTTGGCAGACACT+AGG - chr1_4:2211494-2211513 None:intergenic 40.0%
GGAAAATGTCTAAGTGGACA+AGG - chr1_4:2211544-2211563 None:intergenic 40.0%
!! CAAGGCCATTTTAATGTTCG+AGG - chr1_4:2211662-2211681 None:intergenic 40.0%
! AAAATGGCCTTGCTTTGAGT+AGG + chr1_4:2211670-2211689 Msa0143310:intron 40.0%
CAAGTATTTCATGGGAGTTG+AGG - chr1_4:2211699-2211718 None:intergenic 40.0%
TTCTTCAAACATTCACGAGG+AGG - chr1_4:2211832-2211851 None:intergenic 40.0%
! ATACAAGGTAATGGCGTGTT+TGG - chr1_4:2211888-2211907 None:intergenic 40.0%
!! TCAGTGCCATTGTACTTTTC+AGG - chr1_4:2212204-2212223 None:intergenic 40.0%
GTTCGAAAGAACCAACAACA+CGG + chr1_4:2212280-2212299 Msa0143310:intron 40.0%
TTCGAAAGAACCAACAACAC+GGG + chr1_4:2212281-2212300 Msa0143310:intron 40.0%
TCAAGAATCCAAGCATCCTT+GGG + chr1_4:2212405-2212424 Msa0143310:intron 40.0%
TGGTGACACTAATCCGATTT+AGG - chr1_4:2212483-2212502 None:intergenic 40.0%
CTTGTTTAGATGGCAGAAGT+TGG - chr1_4:2212503-2212522 None:intergenic 40.0%
GTGCGAAGACAAAAATCCAT+TGG + chr1_4:2212671-2212690 Msa0143310:intron 40.0%
AATTACTGCTCACACGCATT+TGG - chr1_4:2212827-2212846 None:intergenic 40.0%
! AACTGCAAAGGGTGTAGTAA+AGG + chr1_4:2212901-2212920 Msa0143310:intron 40.0%
TTTCCTTTCTGTCTTCATCG+CGG - chr1_4:2212936-2212955 None:intergenic 40.0%
!!! ATCACAAGCTCCCTTTTTTG+GGG - chr1_4:2213000-2213019 None:intergenic 40.0%
!!! GTATCACAAGCTCCCTTTTT+TGG - chr1_4:2213002-2213021 None:intergenic 40.0%
CGATTCATGGTTAGATGAAC+TGG - chr1_4:2213636-2213655 None:intergenic 40.0%
TCTAACCATGAATCGAGAAG+AGG + chr1_4:2213641-2213660 Msa0143310:CDS 40.0%
ACCGTTTCAACCACTTTCAA+TGG + chr1_4:2213673-2213692 Msa0143310:CDS 40.0%
GCCATTGAAAGTGGTTGAAA+CGG - chr1_4:2213677-2213696 None:intergenic 40.0%
CACCTACCATTGAACTCATT+AGG + chr1_4:2213996-2214015 Msa0143310:intron 40.0%
CTCCTAATGAGTTCAATGGT+AGG - chr1_4:2214001-2214020 None:intergenic 40.0%
! GTCGGAGTTTTCAGATTTCA+CGG + chr1_4:2214112-2214131 Msa0143310:intron 40.0%
GAAGAGTCATGGAATGAACA+AGG + chr1_4:2214177-2214196 Msa0143310:intron 40.0%
ACACTCATGGATGTATTAGC+TGG + chr1_4:2214289-2214308 Msa0143310:intron 40.0%
TTAGCTGGAAGAAAAACTGG+TGG + chr1_4:2214304-2214323 Msa0143310:intron 40.0%
TTCGCAGTAACCACTAATTC+GGG - chr1_4:2214386-2214405 None:intergenic 40.0%
GTTCGCAGTAACCACTAATT+CGG - chr1_4:2214387-2214406 None:intergenic 40.0%
GAAGAGACTTAGTATTGCTG+TGG + chr1_4:2214696-2214715 Msa0143310:intron 40.0%
TTCATGGATGAACCAACATC+AGG + chr1_4:2214745-2214764 Msa0143310:intron 40.0%
CAGCTATTGCTGATGAAAAG+AGG + chr1_4:2214982-2215001 Msa0143310:intron 40.0%
CTATTGCTGATGAAAAGAGG+AGG + chr1_4:2214985-2215004 Msa0143310:intron 40.0%
ATTCTACAAGCTTGTGTGAG+TGG - chr1_4:2215041-2215060 None:intergenic 40.0%
ATCTAACGTGCACAAACTTC+AGG + chr1_4:2215143-2215162 Msa0143310:intron 40.0%
ATGGTTATAATCCAGCCACA+TGG + chr1_4:2215193-2215212 Msa0143310:intron 40.0%
TTACTGGTAAAGGTTGGAGT+TGG - chr1_4:2215283-2215302 None:intergenic 40.0%
CAGGAAAAGCTTACTGGTAA+AGG - chr1_4:2215293-2215312 None:intergenic 40.0%
ACAACACAGGAAAAGCTTAC+TGG - chr1_4:2215299-2215318 None:intergenic 40.0%
TGGCTAAGGTCATGAGAAAT+CGG - chr1_4:2215555-2215574 None:intergenic 40.0%
TTTCTCATGACCTTAGCCAT+TGG + chr1_4:2215556-2215575 Msa0143310:CDS 40.0%
GAATGATACTCCAATGGCTA+AGG - chr1_4:2215569-2215588 None:intergenic 40.0%
TAGACCGAATGATACTCCAA+TGG - chr1_4:2215575-2215594 None:intergenic 40.0%
! AAAAAGCACAGCACAGTACA+TGG - chr1_4:2215781-2215800 None:intergenic 40.0%
!!! TACTGTGCTGTGCTTTTTCT+TGG + chr1_4:2215783-2215802 Msa0143310:intron 40.0%
! TGCAAGAACGGTTTTCTATC+GGG + chr1_4:2215845-2215864 Msa0143310:intron 40.0%
!! AATTGCACCTGGTTTTCACT+CGG + chr1_4:2216035-2216054 Msa0143310:intron 40.0%
CAAACCCAATCATGGAGTAA+AGG - chr1_4:2216277-2216296 None:intergenic 40.0%
ACTCCATGATTGGGTTTGAA+TGG + chr1_4:2216279-2216298 Msa0143310:three_prime_UTR 40.0%
CTTCCATTCAAACCCAATCA+TGG - chr1_4:2216285-2216304 None:intergenic 40.0%
CATGATTGGGTTTGAATGGA+AGG + chr1_4:2216283-2216302 Msa0143310:three_prime_UTR 40.0%
AAAGAAGGTCGTAGAAATGG+CGG - chr1_4:2216411-2216430 None:intergenic 40.0%
CGACCTTCTTTATGACTCTT+TGG + chr1_4:2216420-2216439 Msa0143310:three_prime_UTR 40.0%
!! ACTCTTTGGAACTTGTTCTC+TGG + chr1_4:2216434-2216453 Msa0143310:three_prime_UTR 40.0%
TGGCTTTCTCATTCCTAAGA+CGG + chr1_4:2216454-2216473 Msa0143310:three_prime_UTR 40.0%
TAGTACCATCTCCACCATAT+AGG - chr1_4:2216701-2216720 None:intergenic 40.0%
! TATGGTGGAGATGGTACTAT+TGG + chr1_4:2216702-2216721 Msa0143310:three_prime_UTR 40.0%
! ATGGTGGAGATGGTACTATT+GGG + chr1_4:2216703-2216722 Msa0143310:three_prime_UTR 40.0%
CCATATAGTGTCCATGCAAT+GGG - chr1_4:2216734-2216753 None:intergenic 40.0%
CACCTAGTTGTGAGGTTATA+AGG - chr1_4:2216757-2216776 None:intergenic 40.0%
ATATGAGCAACAGCAACTTG+AGG - chr1_4:2216872-2216891 None:intergenic 40.0%
! CAAGTTGCTGTTGCTCATAT+AGG + chr1_4:2216872-2216891 Msa0143310:three_prime_UTR 40.0%
GTCTTGCAAGTTCTTATGCC+AGG - chr1_4:2208593-2208612 None:intergenic 45.0%
! AACTCTAGCACGTTTTCACG+CGG - chr1_4:2209255-2209274 None:intergenic 45.0%
TCTTCGAATACACGGGCTTT+AGG + chr1_4:2209274-2209293 Msa0143310:intron 45.0%
TTTCACTAATGCAGCTGGGT+GGG - chr1_4:2209493-2209512 None:intergenic 45.0%
CCATCTTGAACAGTACCAAC+CGG - chr1_4:2209672-2209691 None:intergenic 45.0%
AGGTAGCCTAGAAACTGTCA+TGG - chr1_4:2209763-2209782 None:intergenic 45.0%
GTAGTGGTATTTGTGCTAGG+AGG + chr1_4:2210154-2210173 Msa0143310:CDS 45.0%
! AGAATTGATGCACCGACAGT+TGG + chr1_4:2210591-2210610 Msa0143310:CDS 45.0%
ATCTGCATTGGAGCCTTGAT+TGG + chr1_4:2210666-2210685 Msa0143310:CDS 45.0%
ATCCATTCACCAGATTGAGG+GGG - chr1_4:2210945-2210964 None:intergenic 45.0%
CTTCAACCTACGTTCCTTCT+GGG - chr1_4:2211049-2211068 None:intergenic 45.0%
ACTTCAACCTACGTTCCTTC+TGG - chr1_4:2211050-2211069 None:intergenic 45.0%
GGCAGACACTAGGTCATATT+TGG - chr1_4:2211484-2211503 None:intergenic 45.0%
TGCGGAGGAAAATGTCTAAG+TGG - chr1_4:2211550-2211569 None:intergenic 45.0%
TCAAGAGATGAACTATGCGG+AGG - chr1_4:2211565-2211584 None:intergenic 45.0%
GTATTTCATGGGAGTTGAGG+TGG - chr1_4:2211696-2211715 None:intergenic 45.0%
! TCAGGATTTGGTCTCACAAG+TGG - chr1_4:2211937-2211956 None:intergenic 45.0%
ATGGGGATTCTCTCAGGATT+TGG - chr1_4:2211949-2211968 None:intergenic 45.0%
GTGTATATGGGGATTCTCTC+AGG - chr1_4:2211955-2211974 None:intergenic 45.0%
CTTGCAACAGAGAAGACGAT+TGG - chr1_4:2212179-2212198 None:intergenic 45.0%
CTGAAATGTCATGTGATCGG+TGG + chr1_4:2212374-2212393 Msa0143310:intron 45.0%
GTCAAGAATCCAAGCATCCT+TGG + chr1_4:2212404-2212423 Msa0143310:intron 45.0%
ACCACCAAAACAGACTCAGA+AGG + chr1_4:2212635-2212654 Msa0143310:intron 45.0%
! AGAGCCTTCTGAGTCTGTTT+TGG - chr1_4:2212642-2212661 None:intergenic 45.0%
ATCCATTGGAAGGTGACGTT+TGG + chr1_4:2212685-2212704 Msa0143310:intron 45.0%
AATCCGCGATGAAGACAGAA+AGG + chr1_4:2212930-2212949 Msa0143310:intron 45.0%
AAACCACAACGATGACAGCT+AGG + chr1_4:2212959-2212978 Msa0143310:intron 45.0%
!!! TCACAAGCTCCCTTTTTTGG+GGG - chr1_4:2212999-2213018 None:intergenic 45.0%
TGATTCGAAAGCAGTCACTG+CGG + chr1_4:2213229-2213248 Msa0143310:intron 45.0%
CCATTCCTCTTCTCGATTCA+TGG - chr1_4:2213649-2213668 None:intergenic 45.0%
CCATGAATCGAGAAGAGGAA+TGG + chr1_4:2213646-2213665 Msa0143310:CDS 45.0%
AGAGTTGAGTGACTTACTGC+TGG - chr1_4:2213731-2213750 None:intergenic 45.0%
CAATGGTAGGTGTCCATAGT+TGG - chr1_4:2213988-2214007 None:intergenic 45.0%
ACAGCACTTGTAGGTGTTAG+TGG + chr1_4:2214253-2214272 Msa0143310:intron 45.0%
TTGTAGGTGTTAGTGGTGCT+GGG + chr1_4:2214260-2214279 Msa0143310:intron 45.0%
GAAACATTCGCCCGAATTAG+TGG + chr1_4:2214373-2214392 Msa0143310:intron 45.0%
AGCACTTAGAGATGCTCTTG+TGG + chr1_4:2214636-2214655 Msa0143310:intron 45.0%
GCACTTAGAGATGCTCTTGT+GGG + chr1_4:2214637-2214656 Msa0143310:intron 45.0%
GGAGGACAAGTTATCTATGC+CGG + chr1_4:2215003-2215022 Msa0143310:intron 45.0%
CACAAACTTCAGGCTATCTC+AGG + chr1_4:2215153-2215172 Msa0143310:intron 45.0%
! ACTGACTTCAAGCATCCATG+TGG - chr1_4:2215211-2215230 None:intergenic 45.0%
TACTCCAGCACCAAATTCGA+AGG + chr1_4:2215423-2215442 Msa0143310:CDS 45.0%
!! AACTCCTTCGAATTTGGTGC+TGG - chr1_4:2215430-2215449 None:intergenic 45.0%
GATTGGGTTTGAATGGAAGG+CGG + chr1_4:2216286-2216305 Msa0143310:three_prime_UTR 45.0%
GGTAGATCACATACCGTCTT+AGG - chr1_4:2216470-2216489 None:intergenic 45.0%
CCCATTGCATGGACACTATA+TGG + chr1_4:2216731-2216750 Msa0143310:three_prime_UTR 45.0%
GCCATATAGTGTCCATGCAA+TGG - chr1_4:2216735-2216754 None:intergenic 45.0%
! GGCCTTATAACCTCACAACT+AGG + chr1_4:2216752-2216771 Msa0143310:three_prime_UTR 45.0%
GAAATAGTGATACCAGGAGC+TGG + chr1_4:2216788-2216807 Msa0143310:three_prime_UTR 45.0%
! AGCTGGAAGCATGGAACTAA+AGG + chr1_4:2216805-2216824 Msa0143310:three_prime_UTR 45.0%
! TTGCTGTTGCTCATATAGGC+TGG + chr1_4:2216876-2216895 Msa0143310:three_prime_UTR 45.0%
TGCTGTTGCTCATATAGGCT+GGG + chr1_4:2216877-2216896 Msa0143310:three_prime_UTR 45.0%
!! AATATAATTAAATATCAAAA+GGG - chr1_4:2216491-2216510 None:intergenic 5.0%
!! AAATATAATTAAATATCAAA+AGG - chr1_4:2216492-2216511 None:intergenic 5.0%
!!! ATTTAATTATATTTTCATTA+TGG + chr1_4:2216498-2216517 Msa0143310:intron 5.0%
!!! ATTTTAAATAAAGAAAATAT+AGG - chr1_4:2216557-2216576 None:intergenic 5.0%
!! ATGAGAAGAGGTATCTCCGG+AGG + chr1_4:2208863-2208882 Msa0143310:intron 50.0%
ACTTGATGTAGGGGAGATGC+TGG + chr1_4:2209023-2209042 Msa0143310:intron 50.0%
!! CTCTGGTGCCGACTGTAAAA+GGG - chr1_4:2209172-2209191 None:intergenic 50.0%
!! TCTCTGGTGCCGACTGTAAA+AGG - chr1_4:2209173-2209192 None:intergenic 50.0%
GGAAATTGCGGCAGAGCTTA+AGG + chr1_4:2209446-2209465 Msa0143310:intron 50.0%
CTTTCACTAATGCAGCTGGG+TGG - chr1_4:2209494-2209513 None:intergenic 50.0%
! CCGGTTGGTACTGTTCAAGA+TGG + chr1_4:2209669-2209688 Msa0143310:intron 50.0%
GTAACGCAAATGCCCATGCA+GGG - chr1_4:2209818-2209837 None:intergenic 50.0%
GGGCATTTGCGTTACCCATA+TGG + chr1_4:2209823-2209842 Msa0143310:intron 50.0%
! TTTCGGTTCGTTGCTGCAGT+TGG + chr1_4:2210088-2210107 Msa0143310:CDS 50.0%
TCCATTCACCAGATTGAGGG+GGG - chr1_4:2210944-2210963 None:intergenic 50.0%
CTGATTCCCAGAAGGAACGT+AGG + chr1_4:2211040-2211059 Msa0143310:intron 50.0%
GGCTCGATCAAGTAGTGCTA+AGG - chr1_4:2211247-2211266 None:intergenic 50.0%
TCTCACAAGTGGAGCCAACA+AGG - chr1_4:2211926-2211945 None:intergenic 50.0%
CAACTCCAAACGTACAGGGT+CGG + chr1_4:2212075-2212094 Msa0143310:intron 50.0%
TACATCCGACCCTGTACGTT+TGG - chr1_4:2212083-2212102 None:intergenic 50.0%
GGAGTTGCTGAGCAACATGA+GGG - chr1_4:2212158-2212177 None:intergenic 50.0%
TGGAGTTGCTGAGCAACATG+AGG - chr1_4:2212159-2212178 None:intergenic 50.0%
CTACTATGCCCAAGGATGCT+TGG - chr1_4:2212416-2212435 None:intergenic 50.0%
ATCCTTGGGCATAGTAGCAG+AGG + chr1_4:2212419-2212438 Msa0143310:intron 50.0%
!! AGCAGAGGCACTAAGTGATC+AGG + chr1_4:2212434-2212453 Msa0143310:intron 50.0%
!! GCCTTCTGAGTCTGTTTTGG+TGG - chr1_4:2212639-2212658 None:intergenic 50.0%
CTCCAAACGTCACCTTCCAA+TGG - chr1_4:2212690-2212709 None:intergenic 50.0%
CATTGGAAGGTGACGTTTGG+AGG + chr1_4:2212688-2212707 Msa0143310:intron 50.0%
GATACAAACCTTCAAGGGGG+TGG - chr1_4:2213295-2213314 None:intergenic 50.0%
GTTAGTGGTGCTTTCAGACC+AGG + chr1_4:2214223-2214242 Msa0143310:intron 50.0%
CTTGTAGGTGTTAGTGGTGC+TGG + chr1_4:2214259-2214278 Msa0143310:intron 50.0%
TGCTGGGAAGACAACACTCA+TGG + chr1_4:2214276-2214295 Msa0143310:intron 50.0%
! GTTGATAGACCATCCACACC+AGG - chr1_4:2214667-2214686 None:intergenic 50.0%
CTAGCATCAAGGCCTGATGT+TGG - chr1_4:2214760-2214779 None:intergenic 50.0%
TTGTGTGAGTGGCGATCAAG+AGG - chr1_4:2215030-2215049 None:intergenic 50.0%
ACTTCAAGCATCCATGTGGC+TGG - chr1_4:2215207-2215226 None:intergenic 50.0%
TTCTATCGGGAAAGAGCAGC+AGG + chr1_4:2215858-2215877 Msa0143310:intron 50.0%
TCTATCGGGAAAGAGCAGCA+GGG + chr1_4:2215859-2215878 Msa0143310:intron 50.0%
CATGAAGCCGAGTGAAAACC+AGG - chr1_4:2216045-2216064 None:intergenic 50.0%
TAGAAATGGCGGCAACATCG+AGG - chr1_4:2216400-2216419 None:intergenic 50.0%
ATTGGGCTTCTCCCATTGCA+TGG + chr1_4:2216720-2216739 Msa0143310:three_prime_UTR 50.0%
GATGTAGGGGAGATGCTGGT+AGG + chr1_4:2209027-2209046 Msa0143310:intron 55.0%
GGTAACGCAAATGCCCATGC+AGG - chr1_4:2209819-2209838 None:intergenic 55.0%
CCATTCACCAGATTGAGGGG+GGG - chr1_4:2210943-2210962 None:intergenic 55.0%
TGCTCAACGGGAACACTTGC+CGG + chr1_4:2211588-2211607 Msa0143310:intron 55.0%
GAGGTGGCCTACTCAAAGCA+AGG - chr1_4:2211680-2211699 None:intergenic 55.0%
GGTTCTTGCACCCGTGTTGT+TGG - chr1_4:2212294-2212313 None:intergenic 55.0%
TGCCTCTGCTACTATGCCCA+AGG - chr1_4:2212424-2212443 None:intergenic 55.0%
AGAGCGTGTGCACAGGTGAA+TGG + chr1_4:2212724-2212743 Msa0143310:intron 55.0%
CAGCCTAGCTGTCATCGTTG+TGG - chr1_4:2212965-2212984 None:intergenic 55.0%
CAACGATGACAGCTAGGCTG+CGG + chr1_4:2212965-2212984 Msa0143310:intron 55.0%
GAAGCGAGGCCCCCAAAAAA+GGG + chr1_4:2212987-2213006 Msa0143310:intron 55.0%
TTCAAGGGGGTGGTGTCTAG+AGG - chr1_4:2213285-2213304 None:intergenic 55.0%
TCTAGACACCACCCCCTTGA+AGG + chr1_4:2213284-2213303 Msa0143310:CDS 55.0%
GATGCTCTTGTGGGACTTCC+TGG + chr1_4:2214646-2214665 Msa0143310:intron 55.0%
TCTTGTGGGACTTCCTGGTG+TGG + chr1_4:2214651-2214670 Msa0143310:intron 55.0%
! TAGCAGCGGCTCTAGCATCA+AGG - chr1_4:2214771-2214790 None:intergenic 55.0%
GAGCCGCTGCTATCGTTATG+CGG + chr1_4:2214779-2214798 Msa0143310:intron 55.0%
GGTCCGCATAACGATAGCAG+CGG - chr1_4:2214785-2214804 None:intergenic 55.0%
TGAGTGGCGATCAAGAGGTC+CGG - chr1_4:2215025-2215044 None:intergenic 55.0%
GGAAGGCGGCGAACTTCTTA+TGG + chr1_4:2216300-2216319 Msa0143310:three_prime_UTR 55.0%
GATACCAGGAGCTGGAAGCA+TGG + chr1_4:2216796-2216815 Msa0143310:three_prime_UTR 55.0%
AGTTCCATGCTTCCAGCTCC+TGG - chr1_4:2216803-2216822 None:intergenic 55.0%
GGTTCGCTCCTTCTGCTAGC+AGG + chr1_4:2209913-2209932 Msa0143310:intron 60.0%
CAACACTCCCCCCCTCAATC+TGG + chr1_4:2210933-2210952 Msa0143310:intron 60.0%
CCCCCCCTCAATCTGGTGAA+TGG + chr1_4:2210940-2210959 Msa0143310:intron 60.0%
GGAAGGTGACGTTTGGAGGC+TGG + chr1_4:2212692-2212711 Msa0143310:intron 60.0%
AGGTGACGTTTGGAGGCTGG+TGG + chr1_4:2212695-2212714 Msa0143310:intron 60.0%
GCGTGTGCACAGGTGAATGG+CGG + chr1_4:2212727-2212746 Msa0143310:intron 60.0%
!! CGAGGTTCTGGCTGGTCTTG+AGG + chr1_4:2212750-2212769 Msa0143310:intron 60.0%
GGAAGCGAGGCCCCCAAAAA+AGG + chr1_4:2212986-2213005 Msa0143310:intron 60.0%
AGGGGGTGGTGTCTAGAGGA+TGG - chr1_4:2213281-2213300 None:intergenic 60.0%
GTGGGACTTCCTGGTGTGGA+TGG + chr1_4:2214655-2214674 Msa0143310:intron 60.0%
ATGGCGGCAACATCGAGGCT+TGG - chr1_4:2216395-2216414 None:intergenic 60.0%
TGCACAGGTGAATGGCGGCG+AGG + chr1_4:2212732-2212751 Msa0143310:intron 65.0%
GGTGAATGGCGGCGAGGTTC+TGG + chr1_4:2212738-2212757 Msa0143310:intron 65.0%
! AATGGCGGCGAGGTTCTGGC+TGG + chr1_4:2212742-2212761 Msa0143310:intron 65.0%
ACAGCTAGGCTGCGGAAGCG+AGG + chr1_4:2212973-2212992 Msa0143310:intron 65.0%
! GCGTGCGAGAGCGTGTGCAC+AGG + chr1_4:2212717-2212736 Msa0143310:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 2208421 2217062 2208421 ID=Msa0143310;Name=Msa0143310
chr1_4 mRNA 2208421 2217062 2208421 ID=Msa0143310-mRNA-1;Parent=Msa0143310;Name=Msa0143310-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.12|0.22|1|0.5|0.66|9|574|302
chr1_4 exon 2208421 2208480 2208421 ID=Msa0143310-mRNA-1:exon:893;Parent=Msa0143310-mRNA-1
chr1_4 exon 2210073 2210193 2210073 ID=Msa0143310-mRNA-1:exon:894;Parent=Msa0143310-mRNA-1
chr1_4 exon 2210317 2210420 2210317 ID=Msa0143310-mRNA-1:exon:895;Parent=Msa0143310-mRNA-1
chr1_4 exon 2210576 2210741 2210576 ID=Msa0143310-mRNA-1:exon:896;Parent=Msa0143310-mRNA-1
chr1_4 exon 2213243 2213305 2213243 ID=Msa0143310-mRNA-1:exon:897;Parent=Msa0143310-mRNA-1
chr1_4 exon 2213597 2213733 2213597 ID=Msa0143310-mRNA-1:exon:898;Parent=Msa0143310-mRNA-1
chr1_4 exon 2215415 2215620 2215415 ID=Msa0143310-mRNA-1:exon:899;Parent=Msa0143310-mRNA-1
chr1_4 exon 2216221 2216475 2216221 ID=Msa0143310-mRNA-1:exon:900;Parent=Msa0143310-mRNA-1
chr1_4 exon 2216692 2217062 2216692 ID=Msa0143310-mRNA-1:exon:901;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2208421 2208480 2208421 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2210073 2210193 2210073 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2210317 2210420 2210317 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2210576 2210741 2210576 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2213243 2213305 2213243 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2213597 2213733 2213597 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2215415 2215620 2215415 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 CDS 2216221 2216272 2216221 ID=Msa0143310-mRNA-1:cds;Parent=Msa0143310-mRNA-1
chr1_4 three_prime_UTR 2216273 2216475 2216273 ID=Msa0143310-mRNA-1:three_prime_utr;Parent=Msa0143310-mRNA-1
chr1_4 three_prime_UTR 2216692 2217062 2216692 ID=Msa0143310-mRNA-1:three_prime_utr;Parent=Msa0143310-mRNA-1
Gene Sequence

>Msa0143310

ATGAAGGCTATTGCATTATCAGGCCAAAAAACCAGTTTTGTAACTGATTATGTTCTCAAGATGGCTCTTTCTTTATTTCGGTTCGTTGCTGCAGTTGGTAGAACACCAGTTGTTTCAAATTCATTGTCTATGTTGATCTTTGTAGTGGTATTTGTGCTAGGAGGTTTCATTATTGCCAAAGATGACATCAAGCCATGGATGATATGGGGCTATTATATATCTCCTATAATGTATGGCCAGAATGCCATAGCAATTAATGAATTCTTAGACAAAAGATGGAGTAAACCAAATACAGACACAAGAATTGATGCACCGACAGTTGGAAAAGTACTTCTCAAAGCCAGAGGCTTGTTTACAGAAGATTATTGGTATTGGATCTGCATTGGAGCCTTGATTGGATTTTCTCTTCTCTTCAACCTTCTCTTCATCCTCTCATTGACTTATTTGAATCTCACTGCGGATGAAGATGACAAGAACAATGGAAATCCATCCTCTAGACACCACCCCCTTGAAGGTATGGACTTAGCAGTGAGAAATTCATCAGAAATTACCAGTTCATCTAACCATGAATCGAGAAGAGGAATGGTTCTACCGTTTCAACCACTTTCAATGGCATTCAATCATATTAGCTACTACATAGACATGCCAGCAGAGCTGAGTACTCCAGCACCAAATTCGAAGGAGTTGTACTTCCCAACCAAATATTCTCAATCATTTTTGGTTCAATACAAAGCTAACTTCTGGAAACAAAATCTGTCCTATTGGAGACATTCTCAATACAATGGCGTCCGATTTCTCATGACCTTAGCCATTGGAGTATCATTCGGTCTAATATTTTGGCAGCAAGCCAAAAAGACATGGCAGTTGAGACAATTTATAATGCAGTTCAAACAACCATTTACACACTAA
Protein sequence

>Msa0143310

MKAIALSGQKTSFVTDYVLKMALSLFRFVAAVGRTPVVSNSLSMLIFVVVFVLGGFIIAKDDIKPWMIWGYYISPIMYGQNAIAINEFLDKRWSKPNTDTRIDAPTVGKVLLKARGLFTEDYWYWICIGALIGFSLLFNLLFILSLTYLNLTADEDDKNNGNPSSRHHPLEGMDLAVRNSSEITSSSNHESRRGMVLPFQPLSMAFNHISYYIDMPAELSTPAPNSKELYFPTKYSQSFLVQYKANFWKQNLSYWRHSQYNGVRFLMTLAIGVSFGLIFWQQAKKTWQLRQFIMQFKQPFTH*