Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042330 | XP_003625777.2 | 96.418 | 335 | 12 | 0 | 1 | 335 | 1123 | 1457 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042330 | sp|Q7PC84|AB39G_ARATH | 64.776 | 335 | 118 | 0 | 1 | 335 | 1120 | 1454 | 5.84e-158 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042330 | G7L5Z8 | 96.418 | 335 | 12 | 0 | 1 | 335 | 1123 | 1457 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741900 | Msa1042330 | 0.829732 | 4.366361e-55 | -8.615850e-47 |
| Msa0143310 | Msa1042330 | 0.810780 | 9.720631e-51 | -8.615850e-47 |
| Msa0387580 | Msa1042330 | 0.850856 | 1.295136e-60 | -8.615850e-47 |
| Msa1042330 | Msa1125200 | 0.818242 | 2.170756e-52 | -8.615850e-47 |
| Msa0590800 | Msa1042330 | 0.806369 | 8.505811e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042330 | MtrunA17_Chr7g0265991 | 96.418 | 335 | 12 | 0 | 1 | 335 | 310 | 644 | 0.0 | 673 |
| Msa1042330 | MtrunA17_Chr7g0265981 | 81.791 | 335 | 61 | 0 | 1 | 335 | 1123 | 1457 | 0.0 | 587 |
| Msa1042330 | MtrunA17_Chr7g0265971 | 80.299 | 335 | 66 | 0 | 1 | 335 | 1129 | 1463 | 0.0 | 574 |
| Msa1042330 | MtrunA17_Chr1g0171351 | 63.284 | 335 | 123 | 0 | 1 | 335 | 1134 | 1468 | 1.19e-154 | 470 |
| Msa1042330 | MtrunA17_Chr1g0198291 | 62.985 | 335 | 124 | 0 | 1 | 335 | 1134 | 1468 | 2.45e-146 | 447 |
| Msa1042330 | MtrunA17_Chr7g0265961 | 60.597 | 335 | 132 | 0 | 1 | 335 | 1054 | 1388 | 2.92e-143 | 438 |
| Msa1042330 | MtrunA17_Chr2g0332221 | 53.731 | 335 | 153 | 1 | 1 | 335 | 1095 | 1427 | 7.77e-122 | 381 |
| Msa1042330 | MtrunA17_Chr2g0332241 | 53.433 | 335 | 154 | 1 | 1 | 335 | 1096 | 1428 | 9.36e-121 | 378 |
| Msa1042330 | MtrunA17_Chr7g0262241 | 51.343 | 335 | 162 | 1 | 1 | 335 | 1120 | 1453 | 1.30e-119 | 375 |
| Msa1042330 | MtrunA17_Chr4g0003981 | 53.134 | 335 | 154 | 1 | 1 | 335 | 1106 | 1437 | 9.14e-119 | 373 |
| Msa1042330 | MtrunA17_Chr2g0332211 | 52.537 | 335 | 157 | 1 | 1 | 335 | 1179 | 1511 | 1.30e-118 | 374 |
| Msa1042330 | MtrunA17_Chr7g0262221 | 49.422 | 346 | 163 | 2 | 1 | 335 | 1094 | 1438 | 4.30e-116 | 366 |
| Msa1042330 | MtrunA17_Chr1g0148841 | 50.149 | 335 | 163 | 1 | 1 | 335 | 1117 | 1447 | 4.37e-116 | 366 |
| Msa1042330 | MtrunA17_Chr7g0262231 | 48.955 | 335 | 170 | 1 | 1 | 335 | 1123 | 1456 | 4.01e-115 | 363 |
| Msa1042330 | MtrunA17_Chr7g0261971 | 50.149 | 335 | 166 | 1 | 1 | 335 | 1115 | 1448 | 4.38e-114 | 360 |
| Msa1042330 | MtrunA17_Chr4g0062871 | 51.642 | 335 | 162 | 0 | 1 | 335 | 1084 | 1418 | 1.49e-113 | 358 |
| Msa1042330 | MtrunA17_Chr7g0261951 | 50.742 | 337 | 161 | 2 | 1 | 335 | 1119 | 1452 | 8.07e-113 | 357 |
| Msa1042330 | MtrunA17_Chr1g0148811 | 49.552 | 335 | 165 | 2 | 1 | 335 | 1094 | 1424 | 1.00e-112 | 357 |
| Msa1042330 | MtrunA17_Chr4g0069221 | 46.269 | 335 | 179 | 1 | 1 | 335 | 43 | 376 | 1.15e-109 | 324 |
| Msa1042330 | MtrunA17_Chr3g0138261 | 51.940 | 335 | 157 | 1 | 1 | 335 | 1110 | 1440 | 4.42e-108 | 344 |
| Msa1042330 | MtrunA17_Chr7g0262261 | 50.149 | 335 | 166 | 1 | 1 | 335 | 1055 | 1388 | 1.89e-104 | 335 |
| Msa1042330 | MtrunA17_Chr7g0262261 | 41.346 | 104 | 59 | 2 | 233 | 335 | 1522 | 1624 | 2.73e-17 | 83.2 |
| Msa1042330 | MtrunA17_Chr4g0003971 | 49.552 | 335 | 166 | 2 | 1 | 335 | 1065 | 1396 | 5.83e-103 | 329 |
| Msa1042330 | MtrunA17_Chr7g0262251 | 46.386 | 332 | 163 | 2 | 1 | 318 | 1067 | 1397 | 2.54e-102 | 328 |
| Msa1042330 | MtrunA17_Chr0c20g0493841 | 46.269 | 335 | 179 | 1 | 1 | 335 | 1098 | 1431 | 1.71e-101 | 326 |
| Msa1042330 | MtrunA17_Chr0c20g0493841 | 24.686 | 239 | 170 | 7 | 103 | 335 | 544 | 778 | 6.76e-13 | 69.7 |
| Msa1042330 | MtrunA17_Chr7g0261981 | 45.373 | 335 | 156 | 3 | 1 | 335 | 1101 | 1408 | 6.96e-101 | 324 |
| Msa1042330 | MtrunA17_Chr7g0215001 | 47.183 | 284 | 128 | 1 | 1 | 262 | 93 | 376 | 7.04e-97 | 291 |
| Msa1042330 | MtrunA17_Chr2g0331081 | 48.214 | 336 | 173 | 1 | 1 | 335 | 1131 | 1466 | 1.56e-94 | 306 |
| Msa1042330 | MtrunA17_Chr8g0340651 | 48.810 | 336 | 171 | 1 | 1 | 335 | 1145 | 1480 | 4.57e-92 | 300 |
| Msa1042330 | MtrunA17_Chr7g0262321 | 45.373 | 335 | 173 | 2 | 1 | 335 | 807 | 1131 | 2.19e-90 | 292 |
| Msa1042330 | MtrunA17_Chr3g0104621 | 42.229 | 341 | 189 | 4 | 1 | 335 | 1010 | 1348 | 2.69e-88 | 288 |
| Msa1042330 | MtrunA17_Chr5g0429871 | 46.921 | 341 | 173 | 4 | 1 | 335 | 907 | 1245 | 5.13e-87 | 284 |
| Msa1042330 | MtrunA17_Chr5g0429871 | 26.267 | 217 | 149 | 4 | 52 | 263 | 308 | 518 | 1.57e-12 | 68.6 |
| Msa1042330 | MtrunA17_Chr4g0004021 | 58.642 | 162 | 67 | 0 | 1 | 162 | 1103 | 1264 | 1.11e-55 | 195 |
| Msa1042330 | MtrunA17_Chr4g0004001 | 46.023 | 176 | 92 | 1 | 160 | 335 | 16 | 188 | 2.25e-54 | 176 |
| Msa1042330 | MtrunA17_Chr4g0069211 | 23.529 | 238 | 174 | 5 | 103 | 335 | 532 | 766 | 1.05e-15 | 78.2 |
| Msa1042330 | MtrunA17_Chr1g0208391 | 24.454 | 229 | 162 | 2 | 52 | 272 | 380 | 605 | 1.71e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1042330 | AT1G66950.1 | 64.776 | 335 | 118 | 0 | 1 | 335 | 1120 | 1454 | 5.94e-159 | 481 |
| Msa1042330 | AT2G36380.1 | 61.493 | 335 | 129 | 0 | 1 | 335 | 1119 | 1453 | 6.59e-150 | 457 |
| Msa1042330 | AT1G15520.1 | 55.060 | 336 | 146 | 2 | 1 | 335 | 1092 | 1423 | 6.53e-124 | 387 |
| Msa1042330 | AT3G16340.1 | 52.083 | 336 | 160 | 1 | 1 | 335 | 1081 | 1416 | 4.63e-115 | 363 |
| Msa1042330 | AT3G16340.2 | 52.083 | 336 | 160 | 1 | 1 | 335 | 1076 | 1411 | 5.24e-115 | 363 |
| Msa1042330 | AT2G26910.1 | 51.786 | 336 | 161 | 1 | 1 | 335 | 1085 | 1420 | 1.00e-114 | 362 |
| Msa1042330 | AT1G15210.1 | 50.595 | 336 | 165 | 1 | 1 | 335 | 1107 | 1442 | 1.57e-103 | 332 |
| Msa1042330 | AT1G59870.1 | 49.107 | 336 | 170 | 1 | 1 | 335 | 1134 | 1469 | 1.35e-100 | 324 |
| Msa1042330 | AT3G30842.1 | 44.311 | 334 | 182 | 1 | 2 | 335 | 1089 | 1418 | 1.37e-92 | 301 |
| Msa1042330 | AT2G29940.1 | 43.491 | 338 | 184 | 2 | 1 | 335 | 1093 | 1426 | 8.25e-89 | 291 |
| Msa1042330 | AT3G53480.1 | 43.881 | 335 | 187 | 1 | 1 | 335 | 1117 | 1450 | 6.25e-85 | 280 |
| Msa1042330 | AT2G37280.4 | 42.090 | 335 | 193 | 1 | 1 | 335 | 922 | 1255 | 4.40e-81 | 268 |
| Msa1042330 | AT2G37280.1 | 42.090 | 335 | 193 | 1 | 1 | 335 | 1080 | 1413 | 1.02e-80 | 268 |
| Msa1042330 | AT2G37280.3 | 42.090 | 335 | 193 | 1 | 1 | 335 | 1109 | 1442 | 1.09e-80 | 268 |
| Msa1042330 | AT4G15230.4 | 39.403 | 335 | 202 | 1 | 1 | 335 | 988 | 1321 | 2.64e-79 | 263 |
| Msa1042330 | AT4G15230.3 | 39.403 | 335 | 202 | 1 | 1 | 335 | 1067 | 1400 | 3.02e-79 | 263 |
| Msa1042330 | AT4G15230.1 | 39.403 | 335 | 202 | 1 | 1 | 335 | 1067 | 1400 | 3.02e-79 | 263 |
| Msa1042330 | AT4G15215.9 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1061 | 1394 | 3.63e-79 | 263 |
| Msa1042330 | AT4G15215.9 | 24.432 | 176 | 126 | 4 | 100 | 272 | 526 | 697 | 8.02e-11 | 63.9 |
| Msa1042330 | AT4G15215.4 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1061 | 1394 | 3.63e-79 | 263 |
| Msa1042330 | AT4G15215.4 | 24.432 | 176 | 126 | 4 | 100 | 272 | 526 | 697 | 8.02e-11 | 63.9 |
| Msa1042330 | AT4G15215.5 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1061 | 1394 | 3.63e-79 | 263 |
| Msa1042330 | AT4G15215.5 | 24.432 | 176 | 126 | 4 | 100 | 272 | 526 | 697 | 8.02e-11 | 63.9 |
| Msa1042330 | AT4G15215.3 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1061 | 1394 | 3.63e-79 | 263 |
| Msa1042330 | AT4G15215.3 | 24.432 | 176 | 126 | 4 | 100 | 272 | 526 | 697 | 8.02e-11 | 63.9 |
| Msa1042330 | AT4G15215.2 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1061 | 1394 | 3.63e-79 | 263 |
| Msa1042330 | AT4G15215.2 | 24.432 | 176 | 126 | 4 | 100 | 272 | 526 | 697 | 8.02e-11 | 63.9 |
| Msa1042330 | AT4G15215.1 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1057 | 1390 | 3.97e-79 | 263 |
| Msa1042330 | AT4G15215.1 | 24.432 | 176 | 126 | 4 | 100 | 272 | 522 | 693 | 9.77e-11 | 63.5 |
| Msa1042330 | AT4G15215.8 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1054 | 1387 | 4.52e-79 | 263 |
| Msa1042330 | AT4G15215.8 | 24.432 | 176 | 126 | 4 | 100 | 272 | 519 | 690 | 9.68e-11 | 63.5 |
| Msa1042330 | AT4G15215.10 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1054 | 1387 | 4.52e-79 | 263 |
| Msa1042330 | AT4G15215.10 | 24.432 | 176 | 126 | 4 | 100 | 272 | 519 | 690 | 9.68e-11 | 63.5 |
| Msa1042330 | AT4G15215.6 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1054 | 1387 | 4.52e-79 | 263 |
| Msa1042330 | AT4G15215.6 | 24.432 | 176 | 126 | 4 | 100 | 272 | 519 | 690 | 9.68e-11 | 63.5 |
| Msa1042330 | AT4G15215.7 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1054 | 1387 | 4.52e-79 | 263 |
| Msa1042330 | AT4G15215.7 | 24.432 | 176 | 126 | 4 | 100 | 272 | 519 | 690 | 9.68e-11 | 63.5 |
| Msa1042330 | AT4G15215.11 | 40.597 | 335 | 198 | 1 | 1 | 335 | 1064 | 1397 | 4.65e-79 | 263 |
| Msa1042330 | AT4G15215.11 | 24.432 | 176 | 126 | 4 | 100 | 272 | 529 | 700 | 9.27e-11 | 63.5 |
| Msa1042330 | AT4G15233.5 | 39.403 | 335 | 202 | 1 | 1 | 335 | 916 | 1249 | 1.02e-78 | 261 |
| Msa1042330 | AT4G15233.4 | 39.403 | 335 | 202 | 1 | 1 | 335 | 916 | 1249 | 1.02e-78 | 261 |
| Msa1042330 | AT4G15233.7 | 39.403 | 335 | 202 | 1 | 1 | 335 | 1041 | 1374 | 1.90e-78 | 261 |
| Msa1042330 | AT4G15233.3 | 39.403 | 335 | 202 | 1 | 1 | 335 | 997 | 1330 | 2.01e-78 | 261 |
| Msa1042330 | AT4G15233.6 | 39.403 | 335 | 202 | 1 | 1 | 335 | 997 | 1330 | 2.01e-78 | 261 |
| Msa1042330 | AT4G15233.1 | 39.403 | 335 | 202 | 1 | 1 | 335 | 1059 | 1392 | 2.36e-78 | 261 |
| Msa1042330 | AT4G15233.8 | 39.403 | 335 | 202 | 1 | 1 | 335 | 1050 | 1383 | 2.40e-78 | 261 |
| Msa1042330 | AT4G15236.1 | 40.000 | 335 | 200 | 1 | 1 | 335 | 1057 | 1390 | 1.44e-77 | 259 |
| Msa1042330 | AT4G15233.2 | 36.393 | 305 | 170 | 1 | 1 | 281 | 1059 | 1363 | 3.90e-64 | 220 |
| Msa1042330 | AT1G15520.2 | 58.889 | 180 | 71 | 1 | 1 | 180 | 1092 | 1268 | 8.33e-64 | 219 |
| Msa1042330 | AT2G37280.2 | 44.082 | 245 | 137 | 0 | 1 | 245 | 1080 | 1324 | 3.16e-61 | 212 |
| Msa1042330 | AT4G15230.2 | 38.645 | 251 | 153 | 1 | 1 | 250 | 1067 | 1317 | 1.70e-56 | 198 |
| Msa1042330 | AT2G01320.2 | 23.868 | 243 | 174 | 2 | 38 | 272 | 363 | 602 | 7.26e-15 | 75.9 |
| Msa1042330 | AT2G01320.3 | 23.868 | 243 | 174 | 2 | 38 | 272 | 363 | 602 | 7.67e-15 | 75.9 |
| Msa1042330 | AT2G01320.1 | 23.868 | 243 | 174 | 2 | 38 | 272 | 363 | 602 | 8.17e-15 | 75.9 |
| Msa1042330 | AT2G01320.4 | 23.868 | 243 | 174 | 2 | 38 | 272 | 363 | 602 | 8.17e-15 | 75.9 |
| Msa1042330 | AT2G01320.8 | 23.868 | 243 | 174 | 2 | 38 | 272 | 363 | 602 | 1.01e-14 | 75.5 |
| Msa1042330 | AT2G01320.5 | 23.868 | 243 | 174 | 2 | 38 | 272 | 363 | 602 | 1.01e-14 | 75.5 |
Find 79 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTCTTGAAACAAAATT+TGG | 0.112664 | 7_1:+80227000 | Msa1042330:CDS |
| TATCATTTGGTCTAATATTT+TGG | 0.191198 | 7_1:+80225754 | Msa1042330:CDS |
| ACAAGATCTACTAAATCTTT+TGG | 0.234894 | 7_1:+80225925 | Msa1042330:CDS |
| CACCTAGTTGTGAGGTTATA+AGG | 0.241811 | 7_1:-80226928 | None:intergenic |
| AAGTACAACTCCTTCGAATT+TGG | 0.279548 | 7_1:-80225606 | None:intergenic |
| TTAAGCTGATATACATGATT+TGG | 0.286705 | 7_1:-80227148 | None:intergenic |
| CGACCTTCTTTATGACTCTT+TGG | 0.290161 | 7_1:+80226594 | Msa1042330:CDS |
| GAGGAATCAAGAACTTATTA+AGG | 0.291143 | 7_1:+80225566 | Msa1042330:CDS |
| CCCATTGCATGGACACTATA+TGG | 0.293555 | 7_1:+80226905 | Msa1042330:CDS |
| GGAAGGCGGCGAACTTCTTA+TGG | 0.297790 | 7_1:+80226474 | Msa1042330:CDS |
| GGTAGATCACATACCGTCTT+AGG | 0.307000 | 7_1:-80226641 | None:intergenic |
| TTTATGTACTTCAAATTGTT+TGG | 0.326721 | 7_1:+80226521 | Msa1042330:CDS |
| CTAATCCTTTACTCCATGAT+TGG | 0.327904 | 7_1:+80226443 | Msa1042330:CDS |
| TATGGTGGAGATGGTACTAT+TGG | 0.341651 | 7_1:+80226876 | Msa1042330:CDS |
| GGAAACAAAATCTGTCCTAT+TGG | 0.358578 | 7_1:+80225679 | Msa1042330:CDS |
| GTAAAGGATTAGTGTGTAAA+TGG | 0.376075 | 7_1:-80226432 | None:intergenic |
| TTCAATACAAAGCTAACTTC+TGG | 0.376854 | 7_1:+80225658 | Msa1042330:CDS |
| TTGCTGTTGCTCATATAGGC+TGG | 0.384741 | 7_1:+80227050 | Msa1042330:CDS |
| TTAGCCATTGGAGTATCATT+TGG | 0.388112 | 7_1:+80225741 | Msa1042330:CDS |
| TGATACAGCAAATACCTATA+TGG | 0.392550 | 7_1:+80226858 | Msa1042330:intron |
| TCTGCATTATCCTATGCATT+TGG | 0.399413 | 7_1:+80226061 | Msa1042330:CDS |
| AGTTCCATGCTTCCAGCTCC+TGG | 0.403220 | 7_1:-80226974 | None:intergenic |
| GAATTCTTGAAACAAAATTT+GGG | 0.403642 | 7_1:+80227001 | Msa1042330:CDS |
| CAAGTTGCTGTTGCTCATAT+AGG | 0.408915 | 7_1:+80227046 | Msa1042330:CDS |
| ACTCTTTGGAACTTGTTCTC+TGG | 0.416623 | 7_1:+80226608 | Msa1042330:CDS |
| AATGATTGAGAATATTTGGT+TGG | 0.425570 | 7_1:-80225630 | None:intergenic |
| AGCTGGAAGCATGGAACTAA+AGG | 0.437969 | 7_1:+80226979 | Msa1042330:CDS |
| ACTCCATGATTGGGTTTGAA+TGG | 0.442009 | 7_1:+80226453 | Msa1042330:CDS |
| TTCTATCGGGAAAGAGCAGC+AGG | 0.454418 | 7_1:+80226031 | Msa1042330:CDS |
| TGGCTAAGGTCATGAGAAAT+CGG | 0.458914 | 7_1:-80225725 | None:intergenic |
| CATAAAGAAGGTCGTAGAAA+TGG | 0.461515 | 7_1:-80226585 | None:intergenic |
| ATGATTGAGAATATTTGGTT+GGG | 0.462037 | 7_1:-80225629 | None:intergenic |
| TGCTGTTGCTCATATAGGCT+GGG | 0.467609 | 7_1:+80227051 | Msa1042330:CDS |
| TAATCCTTTACTCCATGATT+GGG | 0.470968 | 7_1:+80226444 | Msa1042330:CDS |
| CACAAACTTCAGGCTATCTC+AGG | 0.473293 | 7_1:+80225326 | Msa1042330:intron |
| ATGGTGGAGATGGTACTATT+GGG | 0.479665 | 7_1:+80226877 | Msa1042330:CDS |
| CCATATAGTGTCCATGCAAT+GGG | 0.480313 | 7_1:-80226905 | None:intergenic |
| GTTCTTGCAATAGAAACAAC+TGG | 0.480838 | 7_1:-80226004 | None:intergenic |
| TAGTACCATCTCCACCATAT+AGG | 0.481162 | 7_1:-80226872 | None:intergenic |
| AACTCCTTCGAATTTGGTGC+TGG | 0.491302 | 7_1:-80225600 | None:intergenic |
| GCCATATAGTGTCCATGCAA+TGG | 0.495949 | 7_1:-80226906 | None:intergenic |
| CAAACCCAATCATGGAGTAA+AGG | 0.497078 | 7_1:-80226448 | None:intergenic |
| ATTATCCTATGCATTTGGTC+AGG | 0.497149 | 7_1:+80226066 | Msa1042330:CDS |
| CAGGAAAAGCTTACTGGTAA+AGG | 0.498211 | 7_1:-80225463 | None:intergenic |
| GTATTGAGAATGTCTCCAAT+AGG | 0.500471 | 7_1:-80225694 | None:intergenic |
| ACTTCAAGCATCCATGTGGC+TGG | 0.506884 | 7_1:-80225377 | None:intergenic |
| TTTCTCATGACCTTAGCCAT+TGG | 0.507382 | 7_1:+80225729 | Msa1042330:CDS |
| CATGATTGGGTTTGAATGGA+AGG | 0.519186 | 7_1:+80226457 | Msa1042330:CDS |
| CTTCCATTCAAACCCAATCA+TGG | 0.527496 | 7_1:-80226456 | None:intergenic |
| TGAGTGGCGATCAAGAGGTC+CGG | 0.535581 | 7_1:-80225195 | None:intergenic |
| AGTTGTTTCTATTGCAAGAA+CGG | 0.543696 | 7_1:+80226006 | Msa1042330:CDS |
| TGGCTTTCTCATTCCTAAGA+CGG | 0.546750 | 7_1:+80226628 | Msa1042330:CDS |
| AATAGAAACAACTGGTTGCA+CGG | 0.547452 | 7_1:-80225996 | None:intergenic |
| GAAATAGTGATACCAGGAGC+TGG | 0.551466 | 7_1:+80226962 | Msa1042330:CDS |
| ATTGGGCTTCTCCCATTGCA+TGG | 0.553135 | 7_1:+80226894 | Msa1042330:CDS |
| AAAAGCTTACTGGTAAAGGT+TGG | 0.553851 | 7_1:-80225459 | None:intergenic |
| AAATGATACTCCAATGGCTA+AGG | 0.555401 | 7_1:-80225739 | None:intergenic |
| TTACTGGTAAAGGTTGGAGT+TGG | 0.559316 | 7_1:-80225453 | None:intergenic |
| GTTCCAAAGAGTCATAAAGA+AGG | 0.566221 | 7_1:-80226597 | None:intergenic |
| AAATACCTATATGGTGGAGA+TGG | 0.568001 | 7_1:+80226867 | Msa1042330:CDS |
| ATGGCGGCAACATCGAGGCT+TGG | 0.573131 | 7_1:-80226566 | None:intergenic |
| ATTCTACAAGCTTGTGTGAG+TGG | 0.575486 | 7_1:-80225211 | None:intergenic |
| GATACCAGGAGCTGGAAGCA+TGG | 0.585002 | 7_1:+80226970 | Msa1042330:CDS |
| TTGTGTGAGTGGCGATCAAG+AGG | 0.589978 | 7_1:-80225200 | None:intergenic |
| TTATACCTGACCAAATGCAT+AGG | 0.602658 | 7_1:-80226071 | None:intergenic |
| TACTCCAGCACCAAATTCGA+AGG | 0.604588 | 7_1:+80225596 | Msa1042330:CDS |
| GGCCTTATAACCTCACAACT+AGG | 0.607702 | 7_1:+80226926 | Msa1042330:CDS |
| ATGCAAACACAAATGCAAAG+AGG | 0.626053 | 7_1:-80227078 | None:intergenic |
| TACAGCAAATACCTATATGG+TGG | 0.633094 | 7_1:+80226861 | Msa1042330:intron |
| TAGACCAAATGATACTCCAA+TGG | 0.637246 | 7_1:-80225745 | None:intergenic |
| ATATGAGCAACAGCAACTTG+AGG | 0.642508 | 7_1:-80227043 | None:intergenic |
| ATGGTTATAATCCAGCCACA+TGG | 0.650103 | 7_1:+80225366 | Msa1042330:five_prime_UTR |
| AATACAGAAATAGTGATACC+AGG | 0.650365 | 7_1:+80226956 | Msa1042330:CDS |
| AAAGAAGGTCGTAGAAATGG+CGG | 0.651076 | 7_1:-80226582 | None:intergenic |
| TGGAGACATTCTCAATACAA+TGG | 0.652813 | 7_1:+80225699 | Msa1042330:CDS |
| GATTGGGTTTGAATGGAAGG+CGG | 0.665897 | 7_1:+80226460 | Msa1042330:CDS |
| TAGAAATGGCGGCAACATCG+AGG | 0.692415 | 7_1:-80226571 | None:intergenic |
| TCTATCGGGAAAGAGCAGCA+GGG | 0.704433 | 7_1:+80226032 | Msa1042330:CDS |
| ACTGACTTCAAGCATCCATG+TGG | 0.707005 | 7_1:-80225381 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATAAAAAAAAAAGTATA+TGG | - | chr7_1:80226115-80226134 | None:intergenic | 10.0% |
| !!! | TACATAAAAAAAAAAGTATA+TGG | - | chr7_1:80226115-80226134 | None:intergenic | 10.0% |
| !!! | ATTTTTGCTTAACAAATTTT+TGG | + | chr7_1:80225890-80225909 | Msa1042330:intron | 15.0% |
| !!! | AAAACAAAATGAAATTTGTT+AGG | - | chr7_1:80226330-80226349 | None:intergenic | 15.0% |
| !!! | ACTCTTTCTTTTTTTAAAAT+TGG | + | chr7_1:80226702-80226721 | Msa1042330:intron | 15.0% |
| !!! | ATTTTTGCTTAACAAATTTT+TGG | + | chr7_1:80225890-80225909 | Msa1042330:intron | 15.0% |
| !!! | AAAACAAAATGAAATTTGTT+AGG | - | chr7_1:80226330-80226349 | None:intergenic | 15.0% |
| !!! | ACTCTTTCTTTTTTTAAAAT+TGG | + | chr7_1:80226702-80226721 | Msa1042330:intron | 15.0% |
| !! | CAAAAATGATTGAGAATATT+TGG | - | chr7_1:80225637-80225656 | None:intergenic | 20.0% |
| !!! | CAAATATTCTCAATCATTTT+TGG | + | chr7_1:80225635-80225654 | Msa1042330:CDS | 20.0% |
| !!! | TATCATTTGGTCTAATATTT+TGG | + | chr7_1:80225754-80225773 | Msa1042330:CDS | 20.0% |
| !! | TTTATGTACTTCAAATTGTT+TGG | + | chr7_1:80226521-80226540 | Msa1042330:CDS | 20.0% |
| !! | GAATTCTTGAAACAAAATTT+GGG | + | chr7_1:80227001-80227020 | Msa1042330:CDS | 20.0% |
| !! | CAAAAATGATTGAGAATATT+TGG | - | chr7_1:80225637-80225656 | None:intergenic | 20.0% |
| !!! | CAAATATTCTCAATCATTTT+TGG | + | chr7_1:80225635-80225654 | Msa1042330:CDS | 20.0% |
| !!! | TATCATTTGGTCTAATATTT+TGG | + | chr7_1:80225754-80225773 | Msa1042330:CDS | 20.0% |
| !! | TTTATGTACTTCAAATTGTT+TGG | + | chr7_1:80226521-80226540 | Msa1042330:CDS | 20.0% |
| !! | GAATTCTTGAAACAAAATTT+GGG | + | chr7_1:80227001-80227020 | Msa1042330:CDS | 20.0% |
| ! | ATGATTGAGAATATTTGGTT+GGG | - | chr7_1:80225632-80225651 | None:intergenic | 25.0% |
| ! | AATGATTGAGAATATTTGGT+TGG | - | chr7_1:80225633-80225652 | None:intergenic | 25.0% |
| !! | GTTCAATTTTTCCTTATCAA+TGG | + | chr7_1:80225817-80225836 | Msa1042330:intron | 25.0% |
| ! | AATATCAAACACCATTGATA+AGG | - | chr7_1:80225831-80225850 | None:intergenic | 25.0% |
| ! | TTAATGAAGTTCAATATGAC+TGG | - | chr7_1:80225858-80225877 | None:intergenic | 25.0% |
| !! | ACAAGATCTACTAAATCTTT+TGG | + | chr7_1:80225925-80225944 | Msa1042330:CDS | 25.0% |
| !! | CAAGATCTACTAAATCTTTT+GGG | + | chr7_1:80225926-80225945 | Msa1042330:CDS | 25.0% |
| ! | TTACAATCAAGAGTGAAAAA+CGG | - | chr7_1:80226189-80226208 | None:intergenic | 25.0% |
| !!! | GTTTTCATTTCTTGTTGTTA+AGG | - | chr7_1:80226279-80226298 | None:intergenic | 25.0% |
| !!! | CAATTTATTGATAATGCAGA+TGG | + | chr7_1:80226376-80226395 | Msa1042330:intron | 25.0% |
| ! | GGAATTCTTGAAACAAAATT+TGG | + | chr7_1:80227000-80227019 | Msa1042330:CDS | 25.0% |
| !! | CATGTATATACTATCTTTTC+TGG | - | chr7_1:80227126-80227145 | None:intergenic | 25.0% |
| ! | TTAAGCTGATATACATGATT+TGG | - | chr7_1:80227151-80227170 | None:intergenic | 25.0% |
| ! | ATGATTGAGAATATTTGGTT+GGG | - | chr7_1:80225632-80225651 | None:intergenic | 25.0% |
| ! | AATGATTGAGAATATTTGGT+TGG | - | chr7_1:80225633-80225652 | None:intergenic | 25.0% |
| !! | GTTCAATTTTTCCTTATCAA+TGG | + | chr7_1:80225817-80225836 | Msa1042330:intron | 25.0% |
| ! | AATATCAAACACCATTGATA+AGG | - | chr7_1:80225831-80225850 | None:intergenic | 25.0% |
| ! | TTAATGAAGTTCAATATGAC+TGG | - | chr7_1:80225858-80225877 | None:intergenic | 25.0% |
| !! | ACAAGATCTACTAAATCTTT+TGG | + | chr7_1:80225925-80225944 | Msa1042330:CDS | 25.0% |
| !! | CAAGATCTACTAAATCTTTT+GGG | + | chr7_1:80225926-80225945 | Msa1042330:CDS | 25.0% |
| ! | TTACAATCAAGAGTGAAAAA+CGG | - | chr7_1:80226189-80226208 | None:intergenic | 25.0% |
| !!! | GTTTTCATTTCTTGTTGTTA+AGG | - | chr7_1:80226279-80226298 | None:intergenic | 25.0% |
| !!! | CAATTTATTGATAATGCAGA+TGG | + | chr7_1:80226376-80226395 | Msa1042330:intron | 25.0% |
| ! | GGAATTCTTGAAACAAAATT+TGG | + | chr7_1:80227000-80227019 | Msa1042330:CDS | 25.0% |
| !! | CATGTATATACTATCTTTTC+TGG | - | chr7_1:80227126-80227145 | None:intergenic | 25.0% |
| ! | TTAAGCTGATATACATGATT+TGG | - | chr7_1:80227151-80227170 | None:intergenic | 25.0% |
| AAGTTGCATAATTACAACAC+AGG | - | chr7_1:80225485-80225504 | None:intergenic | 30.0% | |
| ! | GTTTTGTCTGTACTTTCTTT+AGG | + | chr7_1:80225544-80225563 | Msa1042330:intron | 30.0% |
| GAGGAATCAAGAACTTATTA+AGG | + | chr7_1:80225566-80225585 | Msa1042330:CDS | 30.0% | |
| TTCAATACAAAGCTAACTTC+TGG | + | chr7_1:80225658-80225677 | Msa1042330:CDS | 30.0% | |
| !! | TTTGATGACTTACGTCTTTT+TGG | - | chr7_1:80225787-80225806 | None:intergenic | 30.0% |
| !! | AGTTGTTTCTATTGCAAGAA+CGG | + | chr7_1:80226006-80226025 | Msa1042330:CDS | 30.0% |
| ! | GTAAAGGATTAGTGTGTAAA+TGG | - | chr7_1:80226435-80226454 | None:intergenic | 30.0% |
| TAATCCTTTACTCCATGATT+GGG | + | chr7_1:80226444-80226463 | Msa1042330:CDS | 30.0% | |
| TGATACAGCAAATACCTATA+TGG | + | chr7_1:80226858-80226877 | Msa1042330:intron | 30.0% | |
| AATACAGAAATAGTGATACC+AGG | + | chr7_1:80226956-80226975 | Msa1042330:CDS | 30.0% | |
| AAGTTGCATAATTACAACAC+AGG | - | chr7_1:80225485-80225504 | None:intergenic | 30.0% | |
| ! | GTTTTGTCTGTACTTTCTTT+AGG | + | chr7_1:80225544-80225563 | Msa1042330:intron | 30.0% |
| GAGGAATCAAGAACTTATTA+AGG | + | chr7_1:80225566-80225585 | Msa1042330:CDS | 30.0% | |
| TTCAATACAAAGCTAACTTC+TGG | + | chr7_1:80225658-80225677 | Msa1042330:CDS | 30.0% | |
| !! | TTTGATGACTTACGTCTTTT+TGG | - | chr7_1:80225787-80225806 | None:intergenic | 30.0% |
| !! | AGTTGTTTCTATTGCAAGAA+CGG | + | chr7_1:80226006-80226025 | Msa1042330:CDS | 30.0% |
| ! | GTAAAGGATTAGTGTGTAAA+TGG | - | chr7_1:80226435-80226454 | None:intergenic | 30.0% |
| TAATCCTTTACTCCATGATT+GGG | + | chr7_1:80226444-80226463 | Msa1042330:CDS | 30.0% | |
| TGATACAGCAAATACCTATA+TGG | + | chr7_1:80226858-80226877 | Msa1042330:intron | 30.0% | |
| AATACAGAAATAGTGATACC+AGG | + | chr7_1:80226956-80226975 | Msa1042330:CDS | 30.0% | |
| CTCAGGTGTTCAAAAAATCA+AGG | + | chr7_1:80225343-80225362 | Msa1042330:five_prime_UTR | 35.0% | |
| GGTGTTCAAAAAATCAAGGA+TGG | + | chr7_1:80225347-80225366 | Msa1042330:five_prime_UTR | 35.0% | |
| AAAAGCTTACTGGTAAAGGT+TGG | - | chr7_1:80225462-80225481 | None:intergenic | 35.0% | |
| TTGTCTGTACTTTCTTTAGG+AGG | + | chr7_1:80225547-80225566 | Msa1042330:intron | 35.0% | |
| AAGTACAACTCCTTCGAATT+TGG | - | chr7_1:80225609-80225628 | None:intergenic | 35.0% | |
| GGAAACAAAATCTGTCCTAT+TGG | + | chr7_1:80225679-80225698 | Msa1042330:CDS | 35.0% | |
| GTATTGAGAATGTCTCCAAT+AGG | - | chr7_1:80225697-80225716 | None:intergenic | 35.0% | |
| TGGAGACATTCTCAATACAA+TGG | + | chr7_1:80225699-80225718 | Msa1042330:CDS | 35.0% | |
| AAATGATACTCCAATGGCTA+AGG | - | chr7_1:80225742-80225761 | None:intergenic | 35.0% | |
| ! | TTAGCCATTGGAGTATCATT+TGG | + | chr7_1:80225741-80225760 | Msa1042330:CDS | 35.0% |
| TAGACCAAATGATACTCCAA+TGG | - | chr7_1:80225748-80225767 | None:intergenic | 35.0% | |
| AATAGAAACAACTGGTTGCA+CGG | - | chr7_1:80225999-80226018 | None:intergenic | 35.0% | |
| GTTCTTGCAATAGAAACAAC+TGG | - | chr7_1:80226007-80226026 | None:intergenic | 35.0% | |
| ! | TTGCAAGAACGGTTTTCTAT+CGG | + | chr7_1:80226017-80226036 | Msa1042330:CDS | 35.0% |
| TCTGCATTATCCTATGCATT+TGG | + | chr7_1:80226061-80226080 | Msa1042330:CDS | 35.0% | |
| ATTATCCTATGCATTTGGTC+AGG | + | chr7_1:80226066-80226085 | Msa1042330:CDS | 35.0% | |
| TTATACCTGACCAAATGCAT+AGG | - | chr7_1:80226074-80226093 | None:intergenic | 35.0% | |
| CTTGATTGTAAAATTGCACC+TGG | + | chr7_1:80226198-80226217 | Msa1042330:intron | 35.0% | |
| CTAATCCTTTACTCCATGAT+TGG | + | chr7_1:80226443-80226462 | Msa1042330:CDS | 35.0% | |
| CATAAAGAAGGTCGTAGAAA+TGG | - | chr7_1:80226588-80226607 | None:intergenic | 35.0% | |
| GTTCCAAAGAGTCATAAAGA+AGG | - | chr7_1:80226600-80226619 | None:intergenic | 35.0% | |
| TACAGCAAATACCTATATGG+TGG | + | chr7_1:80226861-80226880 | Msa1042330:intron | 35.0% | |
| ! | AAATACCTATATGGTGGAGA+TGG | + | chr7_1:80226867-80226886 | Msa1042330:CDS | 35.0% |
| ! | ATTTTTGTCACCTAGTTGTG+AGG | - | chr7_1:80226939-80226958 | None:intergenic | 35.0% |
| ATGCAAACACAAATGCAAAG+AGG | - | chr7_1:80227081-80227100 | None:intergenic | 35.0% | |
| !! | ACTATCTTTTCTGGAAGTTG+AGG | - | chr7_1:80227117-80227136 | None:intergenic | 35.0% |
| CTCAGGTGTTCAAAAAATCA+AGG | + | chr7_1:80225343-80225362 | Msa1042330:five_prime_UTR | 35.0% | |
| GGTGTTCAAAAAATCAAGGA+TGG | + | chr7_1:80225347-80225366 | Msa1042330:five_prime_UTR | 35.0% | |
| AAAAGCTTACTGGTAAAGGT+TGG | - | chr7_1:80225462-80225481 | None:intergenic | 35.0% | |
| TTGTCTGTACTTTCTTTAGG+AGG | + | chr7_1:80225547-80225566 | Msa1042330:intron | 35.0% | |
| AAGTACAACTCCTTCGAATT+TGG | - | chr7_1:80225609-80225628 | None:intergenic | 35.0% | |
| GGAAACAAAATCTGTCCTAT+TGG | + | chr7_1:80225679-80225698 | Msa1042330:CDS | 35.0% | |
| GTATTGAGAATGTCTCCAAT+AGG | - | chr7_1:80225697-80225716 | None:intergenic | 35.0% | |
| TGGAGACATTCTCAATACAA+TGG | + | chr7_1:80225699-80225718 | Msa1042330:CDS | 35.0% | |
| AAATGATACTCCAATGGCTA+AGG | - | chr7_1:80225742-80225761 | None:intergenic | 35.0% | |
| ! | TTAGCCATTGGAGTATCATT+TGG | + | chr7_1:80225741-80225760 | Msa1042330:CDS | 35.0% |
| TAGACCAAATGATACTCCAA+TGG | - | chr7_1:80225748-80225767 | None:intergenic | 35.0% | |
| AATAGAAACAACTGGTTGCA+CGG | - | chr7_1:80225999-80226018 | None:intergenic | 35.0% | |
| GTTCTTGCAATAGAAACAAC+TGG | - | chr7_1:80226007-80226026 | None:intergenic | 35.0% | |
| ! | TTGCAAGAACGGTTTTCTAT+CGG | + | chr7_1:80226017-80226036 | Msa1042330:CDS | 35.0% |
| TCTGCATTATCCTATGCATT+TGG | + | chr7_1:80226061-80226080 | Msa1042330:CDS | 35.0% | |
| ATTATCCTATGCATTTGGTC+AGG | + | chr7_1:80226066-80226085 | Msa1042330:CDS | 35.0% | |
| TTATACCTGACCAAATGCAT+AGG | - | chr7_1:80226074-80226093 | None:intergenic | 35.0% | |
| CTTGATTGTAAAATTGCACC+TGG | + | chr7_1:80226198-80226217 | Msa1042330:intron | 35.0% | |
| CTAATCCTTTACTCCATGAT+TGG | + | chr7_1:80226443-80226462 | Msa1042330:CDS | 35.0% | |
| CATAAAGAAGGTCGTAGAAA+TGG | - | chr7_1:80226588-80226607 | None:intergenic | 35.0% | |
| GTTCCAAAGAGTCATAAAGA+AGG | - | chr7_1:80226600-80226619 | None:intergenic | 35.0% | |
| TACAGCAAATACCTATATGG+TGG | + | chr7_1:80226861-80226880 | Msa1042330:intron | 35.0% | |
| ! | AAATACCTATATGGTGGAGA+TGG | + | chr7_1:80226867-80226886 | Msa1042330:CDS | 35.0% |
| ! | ATTTTTGTCACCTAGTTGTG+AGG | - | chr7_1:80226939-80226958 | None:intergenic | 35.0% |
| ATGCAAACACAAATGCAAAG+AGG | - | chr7_1:80227081-80227100 | None:intergenic | 35.0% | |
| !! | ACTATCTTTTCTGGAAGTTG+AGG | - | chr7_1:80227117-80227136 | None:intergenic | 35.0% |
| ATTCTACAAGCTTGTGTGAG+TGG | - | chr7_1:80225214-80225233 | None:intergenic | 40.0% | |
| ATCTAACGTGCACAAACTTC+AGG | + | chr7_1:80225316-80225335 | Msa1042330:intron | 40.0% | |
| ATGGTTATAATCCAGCCACA+TGG | + | chr7_1:80225366-80225385 | Msa1042330:five_prime_UTR | 40.0% | |
| TTACTGGTAAAGGTTGGAGT+TGG | - | chr7_1:80225456-80225475 | None:intergenic | 40.0% | |
| CAGGAAAAGCTTACTGGTAA+AGG | - | chr7_1:80225466-80225485 | None:intergenic | 40.0% | |
| ACAACACAGGAAAAGCTTAC+TGG | - | chr7_1:80225472-80225491 | None:intergenic | 40.0% | |
| TGGCTAAGGTCATGAGAAAT+CGG | - | chr7_1:80225728-80225747 | None:intergenic | 40.0% | |
| TTTCTCATGACCTTAGCCAT+TGG | + | chr7_1:80225729-80225748 | Msa1042330:CDS | 40.0% | |
| ! | AAAAAGCACAGCACAGTACA+TGG | - | chr7_1:80225954-80225973 | None:intergenic | 40.0% |
| !!! | TACTGTGCTGTGCTTTTTCT+TGG | + | chr7_1:80225956-80225975 | Msa1042330:CDS | 40.0% |
| ! | TGCAAGAACGGTTTTCTATC+GGG | + | chr7_1:80226018-80226037 | Msa1042330:CDS | 40.0% |
| !! | AATTGCACCTGGTTTTCACT+CGG | + | chr7_1:80226209-80226228 | Msa1042330:intron | 40.0% |
| CAAACCCAATCATGGAGTAA+AGG | - | chr7_1:80226451-80226470 | None:intergenic | 40.0% | |
| ACTCCATGATTGGGTTTGAA+TGG | + | chr7_1:80226453-80226472 | Msa1042330:CDS | 40.0% | |
| CTTCCATTCAAACCCAATCA+TGG | - | chr7_1:80226459-80226478 | None:intergenic | 40.0% | |
| CATGATTGGGTTTGAATGGA+AGG | + | chr7_1:80226457-80226476 | Msa1042330:CDS | 40.0% | |
| AAAGAAGGTCGTAGAAATGG+CGG | - | chr7_1:80226585-80226604 | None:intergenic | 40.0% | |
| CGACCTTCTTTATGACTCTT+TGG | + | chr7_1:80226594-80226613 | Msa1042330:CDS | 40.0% | |
| !! | ACTCTTTGGAACTTGTTCTC+TGG | + | chr7_1:80226608-80226627 | Msa1042330:CDS | 40.0% |
| TGGCTTTCTCATTCCTAAGA+CGG | + | chr7_1:80226628-80226647 | Msa1042330:CDS | 40.0% | |
| TAGTACCATCTCCACCATAT+AGG | - | chr7_1:80226875-80226894 | None:intergenic | 40.0% | |
| ! | TATGGTGGAGATGGTACTAT+TGG | + | chr7_1:80226876-80226895 | Msa1042330:CDS | 40.0% |
| ! | ATGGTGGAGATGGTACTATT+GGG | + | chr7_1:80226877-80226896 | Msa1042330:CDS | 40.0% |
| CCATATAGTGTCCATGCAAT+GGG | - | chr7_1:80226908-80226927 | None:intergenic | 40.0% | |
| CACCTAGTTGTGAGGTTATA+AGG | - | chr7_1:80226931-80226950 | None:intergenic | 40.0% | |
| ATATGAGCAACAGCAACTTG+AGG | - | chr7_1:80227046-80227065 | None:intergenic | 40.0% | |
| ! | CAAGTTGCTGTTGCTCATAT+AGG | + | chr7_1:80227046-80227065 | Msa1042330:CDS | 40.0% |
| ATTCTACAAGCTTGTGTGAG+TGG | - | chr7_1:80225214-80225233 | None:intergenic | 40.0% | |
| ATCTAACGTGCACAAACTTC+AGG | + | chr7_1:80225316-80225335 | Msa1042330:intron | 40.0% | |
| ATGGTTATAATCCAGCCACA+TGG | + | chr7_1:80225366-80225385 | Msa1042330:five_prime_UTR | 40.0% | |
| TTACTGGTAAAGGTTGGAGT+TGG | - | chr7_1:80225456-80225475 | None:intergenic | 40.0% | |
| CAGGAAAAGCTTACTGGTAA+AGG | - | chr7_1:80225466-80225485 | None:intergenic | 40.0% | |
| ACAACACAGGAAAAGCTTAC+TGG | - | chr7_1:80225472-80225491 | None:intergenic | 40.0% | |
| TGGCTAAGGTCATGAGAAAT+CGG | - | chr7_1:80225728-80225747 | None:intergenic | 40.0% | |
| TTTCTCATGACCTTAGCCAT+TGG | + | chr7_1:80225729-80225748 | Msa1042330:CDS | 40.0% | |
| ! | AAAAAGCACAGCACAGTACA+TGG | - | chr7_1:80225954-80225973 | None:intergenic | 40.0% |
| !!! | TACTGTGCTGTGCTTTTTCT+TGG | + | chr7_1:80225956-80225975 | Msa1042330:CDS | 40.0% |
| ! | TGCAAGAACGGTTTTCTATC+GGG | + | chr7_1:80226018-80226037 | Msa1042330:CDS | 40.0% |
| !! | AATTGCACCTGGTTTTCACT+CGG | + | chr7_1:80226209-80226228 | Msa1042330:intron | 40.0% |
| CAAACCCAATCATGGAGTAA+AGG | - | chr7_1:80226451-80226470 | None:intergenic | 40.0% | |
| ACTCCATGATTGGGTTTGAA+TGG | + | chr7_1:80226453-80226472 | Msa1042330:CDS | 40.0% | |
| CTTCCATTCAAACCCAATCA+TGG | - | chr7_1:80226459-80226478 | None:intergenic | 40.0% | |
| CATGATTGGGTTTGAATGGA+AGG | + | chr7_1:80226457-80226476 | Msa1042330:CDS | 40.0% | |
| AAAGAAGGTCGTAGAAATGG+CGG | - | chr7_1:80226585-80226604 | None:intergenic | 40.0% | |
| CGACCTTCTTTATGACTCTT+TGG | + | chr7_1:80226594-80226613 | Msa1042330:CDS | 40.0% | |
| !! | ACTCTTTGGAACTTGTTCTC+TGG | + | chr7_1:80226608-80226627 | Msa1042330:CDS | 40.0% |
| TGGCTTTCTCATTCCTAAGA+CGG | + | chr7_1:80226628-80226647 | Msa1042330:CDS | 40.0% | |
| TAGTACCATCTCCACCATAT+AGG | - | chr7_1:80226875-80226894 | None:intergenic | 40.0% | |
| ! | TATGGTGGAGATGGTACTAT+TGG | + | chr7_1:80226876-80226895 | Msa1042330:CDS | 40.0% |
| ! | ATGGTGGAGATGGTACTATT+GGG | + | chr7_1:80226877-80226896 | Msa1042330:CDS | 40.0% |
| CCATATAGTGTCCATGCAAT+GGG | - | chr7_1:80226908-80226927 | None:intergenic | 40.0% | |
| CACCTAGTTGTGAGGTTATA+AGG | - | chr7_1:80226931-80226950 | None:intergenic | 40.0% | |
| ATATGAGCAACAGCAACTTG+AGG | - | chr7_1:80227046-80227065 | None:intergenic | 40.0% | |
| ! | CAAGTTGCTGTTGCTCATAT+AGG | + | chr7_1:80227046-80227065 | Msa1042330:CDS | 40.0% |
| CACAAACTTCAGGCTATCTC+AGG | + | chr7_1:80225326-80225345 | Msa1042330:intron | 45.0% | |
| ! | ACTGACTTCAAGCATCCATG+TGG | - | chr7_1:80225384-80225403 | None:intergenic | 45.0% |
| TACTCCAGCACCAAATTCGA+AGG | + | chr7_1:80225596-80225615 | Msa1042330:CDS | 45.0% | |
| !! | AACTCCTTCGAATTTGGTGC+TGG | - | chr7_1:80225603-80225622 | None:intergenic | 45.0% |
| GATTGGGTTTGAATGGAAGG+CGG | + | chr7_1:80226460-80226479 | Msa1042330:CDS | 45.0% | |
| GGTAGATCACATACCGTCTT+AGG | - | chr7_1:80226644-80226663 | None:intergenic | 45.0% | |
| CCCATTGCATGGACACTATA+TGG | + | chr7_1:80226905-80226924 | Msa1042330:CDS | 45.0% | |
| GCCATATAGTGTCCATGCAA+TGG | - | chr7_1:80226909-80226928 | None:intergenic | 45.0% | |
| ! | GGCCTTATAACCTCACAACT+AGG | + | chr7_1:80226926-80226945 | Msa1042330:CDS | 45.0% |
| GAAATAGTGATACCAGGAGC+TGG | + | chr7_1:80226962-80226981 | Msa1042330:CDS | 45.0% | |
| ! | AGCTGGAAGCATGGAACTAA+AGG | + | chr7_1:80226979-80226998 | Msa1042330:CDS | 45.0% |
| ! | TTGCTGTTGCTCATATAGGC+TGG | + | chr7_1:80227050-80227069 | Msa1042330:CDS | 45.0% |
| TGCTGTTGCTCATATAGGCT+GGG | + | chr7_1:80227051-80227070 | Msa1042330:CDS | 45.0% | |
| CACAAACTTCAGGCTATCTC+AGG | + | chr7_1:80225326-80225345 | Msa1042330:intron | 45.0% | |
| ! | ACTGACTTCAAGCATCCATG+TGG | - | chr7_1:80225384-80225403 | None:intergenic | 45.0% |
| TACTCCAGCACCAAATTCGA+AGG | + | chr7_1:80225596-80225615 | Msa1042330:CDS | 45.0% | |
| !! | AACTCCTTCGAATTTGGTGC+TGG | - | chr7_1:80225603-80225622 | None:intergenic | 45.0% |
| GATTGGGTTTGAATGGAAGG+CGG | + | chr7_1:80226460-80226479 | Msa1042330:CDS | 45.0% | |
| GGTAGATCACATACCGTCTT+AGG | - | chr7_1:80226644-80226663 | None:intergenic | 45.0% | |
| CCCATTGCATGGACACTATA+TGG | + | chr7_1:80226905-80226924 | Msa1042330:CDS | 45.0% | |
| GCCATATAGTGTCCATGCAA+TGG | - | chr7_1:80226909-80226928 | None:intergenic | 45.0% | |
| ! | GGCCTTATAACCTCACAACT+AGG | + | chr7_1:80226926-80226945 | Msa1042330:CDS | 45.0% |
| GAAATAGTGATACCAGGAGC+TGG | + | chr7_1:80226962-80226981 | Msa1042330:CDS | 45.0% | |
| ! | AGCTGGAAGCATGGAACTAA+AGG | + | chr7_1:80226979-80226998 | Msa1042330:CDS | 45.0% |
| ! | TTGCTGTTGCTCATATAGGC+TGG | + | chr7_1:80227050-80227069 | Msa1042330:CDS | 45.0% |
| TGCTGTTGCTCATATAGGCT+GGG | + | chr7_1:80227051-80227070 | Msa1042330:CDS | 45.0% | |
| !! | AATATAATTAAATATCAAAA+GGG | - | chr7_1:80226665-80226684 | None:intergenic | 5.0% |
| !! | AAATATAATTAAATATCAAA+AGG | - | chr7_1:80226666-80226685 | None:intergenic | 5.0% |
| !!! | ATTTAATTATATTTTCATTA+TGG | + | chr7_1:80226672-80226691 | Msa1042330:intron | 5.0% |
| !!! | ATTTTAAATAAAGAAAATAT+AGG | - | chr7_1:80226731-80226750 | None:intergenic | 5.0% |
| !! | AATATAATTAAATATCAAAA+GGG | - | chr7_1:80226665-80226684 | None:intergenic | 5.0% |
| !! | AAATATAATTAAATATCAAA+AGG | - | chr7_1:80226666-80226685 | None:intergenic | 5.0% |
| !!! | ATTTAATTATATTTTCATTA+TGG | + | chr7_1:80226672-80226691 | Msa1042330:intron | 5.0% |
| !!! | ATTTTAAATAAAGAAAATAT+AGG | - | chr7_1:80226731-80226750 | None:intergenic | 5.0% |
| TTGTGTGAGTGGCGATCAAG+AGG | - | chr7_1:80225203-80225222 | None:intergenic | 50.0% | |
| ACTTCAAGCATCCATGTGGC+TGG | - | chr7_1:80225380-80225399 | None:intergenic | 50.0% | |
| TTCTATCGGGAAAGAGCAGC+AGG | + | chr7_1:80226031-80226050 | Msa1042330:CDS | 50.0% | |
| TCTATCGGGAAAGAGCAGCA+GGG | + | chr7_1:80226032-80226051 | Msa1042330:CDS | 50.0% | |
| CATGAAGCCGAGTGAAAACC+AGG | - | chr7_1:80226219-80226238 | None:intergenic | 50.0% | |
| TAGAAATGGCGGCAACATCG+AGG | - | chr7_1:80226574-80226593 | None:intergenic | 50.0% | |
| ATTGGGCTTCTCCCATTGCA+TGG | + | chr7_1:80226894-80226913 | Msa1042330:CDS | 50.0% | |
| TTGTGTGAGTGGCGATCAAG+AGG | - | chr7_1:80225203-80225222 | None:intergenic | 50.0% | |
| ACTTCAAGCATCCATGTGGC+TGG | - | chr7_1:80225380-80225399 | None:intergenic | 50.0% | |
| TTCTATCGGGAAAGAGCAGC+AGG | + | chr7_1:80226031-80226050 | Msa1042330:CDS | 50.0% | |
| TCTATCGGGAAAGAGCAGCA+GGG | + | chr7_1:80226032-80226051 | Msa1042330:CDS | 50.0% | |
| CATGAAGCCGAGTGAAAACC+AGG | - | chr7_1:80226219-80226238 | None:intergenic | 50.0% | |
| TAGAAATGGCGGCAACATCG+AGG | - | chr7_1:80226574-80226593 | None:intergenic | 50.0% | |
| ATTGGGCTTCTCCCATTGCA+TGG | + | chr7_1:80226894-80226913 | Msa1042330:CDS | 50.0% | |
| TGAGTGGCGATCAAGAGGTC+CGG | - | chr7_1:80225198-80225217 | None:intergenic | 55.0% | |
| GGAAGGCGGCGAACTTCTTA+TGG | + | chr7_1:80226474-80226493 | Msa1042330:CDS | 55.0% | |
| GATACCAGGAGCTGGAAGCA+TGG | + | chr7_1:80226970-80226989 | Msa1042330:CDS | 55.0% | |
| AGTTCCATGCTTCCAGCTCC+TGG | - | chr7_1:80226977-80226996 | None:intergenic | 55.0% | |
| TGAGTGGCGATCAAGAGGTC+CGG | - | chr7_1:80225198-80225217 | None:intergenic | 55.0% | |
| GGAAGGCGGCGAACTTCTTA+TGG | + | chr7_1:80226474-80226493 | Msa1042330:CDS | 55.0% | |
| GATACCAGGAGCTGGAAGCA+TGG | + | chr7_1:80226970-80226989 | Msa1042330:CDS | 55.0% | |
| AGTTCCATGCTTCCAGCTCC+TGG | - | chr7_1:80226977-80226996 | None:intergenic | 55.0% | |
| ATGGCGGCAACATCGAGGCT+TGG | - | chr7_1:80226569-80226588 | None:intergenic | 60.0% | |
| ATGGCGGCAACATCGAGGCT+TGG | - | chr7_1:80226569-80226588 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 80225194 | 80227234 | 80225194 | ID=Msa1042330;Name=Msa1042330 |
| chr7_1 | mRNA | 80225194 | 80227234 | 80225194 | ID=Msa1042330-mRNA-1;Parent=Msa1042330;Name=Msa1042330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|1|0.83|6|99|335 |
| chr7_1 | exon | 80225194 | 80225241 | 80225194 | ID=Msa1042330-mRNA-1:exon:21765;Parent=Msa1042330-mRNA-1 |
| chr7_1 | exon | 80225338 | 80225471 | 80225338 | ID=Msa1042330-mRNA-1:exon:21766;Parent=Msa1042330-mRNA-1 |
| chr7_1 | exon | 80225566 | 80225793 | 80225566 | ID=Msa1042330-mRNA-1:exon:21767;Parent=Msa1042330-mRNA-1 |
| chr7_1 | exon | 80225916 | 80226087 | 80225916 | ID=Msa1042330-mRNA-1:exon:21768;Parent=Msa1042330-mRNA-1 |
| chr7_1 | exon | 80226395 | 80226649 | 80226395 | ID=Msa1042330-mRNA-1:exon:21769;Parent=Msa1042330-mRNA-1 |
| chr7_1 | exon | 80226866 | 80227234 | 80226866 | ID=Msa1042330-mRNA-1:exon:21770;Parent=Msa1042330-mRNA-1 |
| chr7_1 | five_prime_UTR | 80225194 | 80225241 | 80225194 | ID=Msa1042330-mRNA-1:five_prime_utr;Parent=Msa1042330-mRNA-1 |
| chr7_1 | five_prime_UTR | 80225338 | 80225388 | 80225338 | ID=Msa1042330-mRNA-1:five_prime_utr;Parent=Msa1042330-mRNA-1 |
| chr7_1 | CDS | 80225389 | 80225471 | 80225389 | ID=Msa1042330-mRNA-1:cds;Parent=Msa1042330-mRNA-1 |
| chr7_1 | CDS | 80225566 | 80225793 | 80225566 | ID=Msa1042330-mRNA-1:cds;Parent=Msa1042330-mRNA-1 |
| chr7_1 | CDS | 80225916 | 80226087 | 80225916 | ID=Msa1042330-mRNA-1:cds;Parent=Msa1042330-mRNA-1 |
| chr7_1 | CDS | 80226395 | 80226649 | 80226395 | ID=Msa1042330-mRNA-1:cds;Parent=Msa1042330-mRNA-1 |
| chr7_1 | CDS | 80226866 | 80227135 | 80226866 | ID=Msa1042330-mRNA-1:cds;Parent=Msa1042330-mRNA-1 |
| chr7_1 | three_prime_UTR | 80227136 | 80227234 | 80227136 | ID=Msa1042330-mRNA-1:three_prime_utr;Parent=Msa1042330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
