AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143990 MtrunA17_Chr1g0160031 89.764 381 39 0 1 381 4 384 0.0 712
Msa0143990 MtrunA17_Chr1g0160011 85.488 379 54 1 1 378 4 382 0.0 668
Msa0143990 MtrunA17_Chr1g0159991 82.768 383 64 1 1 381 1 383 0.0 652
Msa0143990 MtrunA17_Chr1g0159981 78.851 383 75 2 1 381 15 393 0.0 609
Msa0143990 MtrunA17_Chr1g0159971 66.844 377 120 3 9 380 17 393 0.0 525
Msa0143990 MtrunA17_Chr1g0160101 60.800 375 144 2 9 380 15 389 8.63e-164 464
Msa0143990 MtrunA17_Chr7g0254461 52.800 375 171 4 12 380 19 393 2.77e-141 407
Msa0143990 MtrunA17_Chr8g0381581 53.261 368 167 3 12 374 16 383 5.86e-141 406
Msa0143990 MtrunA17_Chr7g0226941 48.603 358 177 4 28 380 25 380 1.37e-114 338
Msa0143990 MtrunA17_Chr6g0450701 43.411 387 198 7 1 378 4 378 1.35e-100 303
Msa0143990 MtrunA17_Chr7g0273101 45.706 361 181 9 25 376 18 372 1.23e-95 290
Msa0143990 MtrunA17_Chr7g0275291 42.175 377 202 8 10 378 7 375 2.46e-92 281
Msa0143990 MtrunA17_Chr7g0226931 40.153 391 205 8 12 378 13 398 1.42e-90 278
Msa0143990 MtrunA17_Chr1g0191461 43.454 359 189 9 12 362 7 359 1.73e-90 276
Msa0143990 MtrunA17_Chr7g0226911 39.164 383 212 8 12 378 7 384 8.16e-89 273
Msa0143990 MtrunA17_Chr8g0352901 42.078 385 194 9 10 378 1 372 5.60e-88 270
Msa0143990 MtrunA17_Chr6g0450711 43.175 359 185 7 29 379 115 462 1.02e-87 273
Msa0143990 MtrunA17_Chr6g0450731 40.761 368 193 9 17 379 15 362 1.40e-85 264
Msa0143990 MtrunA17_Chr8g0347751 41.274 361 192 6 30 378 30 382 7.41e-85 263
Msa0143990 MtrunA17_Chr6g0450721 38.482 382 201 8 10 379 1 360 3.43e-82 255
Msa0143990 MtrunA17_Chr7g0271551 41.210 347 184 8 36 379 36 365 8.33e-79 246
Msa0143990 MtrunA17_Chr8g0339251 39.420 345 176 10 10 343 1 323 4.88e-67 215
Msa0143990 MtrunA17_Chr2g0283481 34.536 388 213 13 1 370 12 376 2.21e-56 189
Msa0143990 MtrunA17_Chr2g0283501 33.862 378 210 11 15 374 14 369 2.10e-49 171
Msa0143990 MtrunA17_Chr2g0283531 35.674 356 194 12 34 372 29 366 2.94e-49 170
Msa0143990 MtrunA17_Chr3g0104821 34.986 363 188 15 34 372 42 380 4.81e-49 170
Msa0143990 MtrunA17_Chr2g0317271 33.803 355 190 12 34 373 28 352 5.23e-48 166
Msa0143990 MtrunA17_Chr2g0317261 33.521 355 191 12 34 373 28 352 5.45e-48 166
Msa0143990 MtrunA17_Chr0c01g0489581 33.616 354 190 12 34 372 28 351 1.48e-47 165
Msa0143990 MtrunA17_Chr0c01g0489571 33.616 354 190 12 34 372 28 351 1.72e-47 165
Msa0143990 MtrunA17_Chr2g0283511 32.891 377 220 10 14 373 9 369 5.56e-47 164
Msa0143990 MtrunA17_Chr4g0057991 33.240 358 199 13 34 374 37 371 4.29e-45 159
Msa0143990 MtrunA17_Chr2g0301581 33.983 359 190 12 29 372 27 353 1.47e-44 157
Msa0143990 MtrunA17_Chr2g0301541 33.705 359 191 12 29 372 27 353 6.13e-43 153
Msa0143990 MtrunA17_Chr3g0112821 34.091 352 190 14 34 370 28 352 1.68e-42 152
Msa0143990 MtrunA17_Chr8g0341001 32.075 371 214 12 4 362 2 346 1.73e-41 149
Msa0143990 MtrunA17_Chr3g0112691 32.386 352 207 10 34 372 28 361 1.05e-40 147
Msa0143990 MtrunA17_Chr8g0349341 30.812 357 210 10 15 358 10 342 1.94e-40 146
Msa0143990 MtrunA17_Chr3g0093031 33.708 356 191 14 34 370 28 357 2.27e-40 146
Msa0143990 MtrunA17_Chr2g0330781 32.647 340 193 12 35 362 30 345 2.93e-40 145
Msa0143990 MtrunA17_Chr3g0096551 33.062 369 196 14 34 372 27 374 5.46e-40 145
Msa0143990 MtrunA17_Chr4g0027521 32.635 334 191 11 35 356 26 337 1.76e-38 141
Msa0143990 MtrunA17_Chr8g0349321 30.793 328 200 7 36 358 37 342 3.93e-37 137
Msa0143990 MtrunA17_Chr5g0432101 29.315 365 209 16 15 358 8 344 9.76e-35 131
Msa0143990 MtrunA17_Chr2g0320671 31.065 338 200 10 35 362 29 343 2.78e-34 129
Msa0143990 MtrunA17_Chr2g0301641 32.239 335 188 10 36 356 43 352 3.81e-34 130
Msa0143990 MtrunA17_Chr8g0344941 30.220 364 214 10 13 362 18 355 5.29e-34 129
Msa0143990 MtrunA17_Chr8g0380041 29.805 359 212 11 12 358 9 339 1.73e-33 128
Msa0143990 MtrunA17_Chr7g0274991 30.978 368 207 14 12 365 15 349 9.55e-33 126
Msa0143990 MtrunA17_Chr2g0294311 29.894 378 217 15 12 369 12 361 1.17e-32 125
Msa0143990 MtrunA17_Chr1g0182811 31.522 368 207 14 10 362 11 348 3.74e-32 124
Msa0143990 MtrunA17_Chr1g0156911 29.380 371 210 14 11 358 4 345 8.07e-32 123
Msa0143990 MtrunA17_Chr3g0120861 29.042 334 204 12 35 358 37 347 1.36e-31 122
Msa0143990 MtrunA17_Chr5g0438621 29.692 357 209 14 12 357 13 338 4.03e-31 121
Msa0143990 MtrunA17_Chr5g0396511 30.882 340 198 13 38 365 48 362 4.32e-31 122
Msa0143990 MtrunA17_Chr7g0275001 28.804 368 222 11 12 365 1 342 4.80e-31 121
Msa0143990 MtrunA17_Chr5g0438641 28.612 353 213 11 19 358 15 341 5.21e-31 121
Msa0143990 MtrunA17_Chr2g0285061 28.571 371 222 11 1 358 1 341 8.45e-31 120
Msa0143990 MtrunA17_Chr8g0349301 31.849 292 175 9 36 322 37 309 1.16e-30 119
Msa0143990 MtrunA17_Chr7g0275011 29.919 371 210 14 13 365 12 350 1.43e-30 120
Msa0143990 MtrunA17_Chr3g0105401 29.586 338 198 13 35 358 27 338 3.26e-30 119
Msa0143990 MtrunA17_Chr2g0301591 30.795 302 168 7 14 298 6 283 5.03e-30 116
Msa0143990 MtrunA17_Chr3g0104831 29.595 321 185 11 70 372 2 299 5.46e-30 117
Msa0143990 MtrunA17_Chr5g0438631 28.219 365 211 14 10 358 9 338 1.13e-29 117
Msa0143990 MtrunA17_Chr4g0068441 30.435 345 206 11 29 362 28 349 1.70e-29 117
Msa0143990 MtrunA17_Chr3g0086641 28.877 374 222 12 1 358 1 346 1.75e-29 117
Msa0143990 MtrunA17_Chr3g0131321 28.994 338 204 9 34 358 32 346 1.87e-29 117
Msa0143990 MtrunA17_Chr5g0444401 30.725 345 194 13 35 362 27 343 1.95e-29 117
Msa0143990 MtrunA17_Chr1g0156931 29.201 363 221 14 12 362 14 352 1.99e-29 117
Msa0143990 MtrunA17_Chr8g0374101 27.666 347 211 11 36 365 37 360 4.79e-29 116
Msa0143990 MtrunA17_Chr2g0283191 27.446 368 221 13 13 359 15 357 4.88e-29 115
Msa0143990 MtrunA17_Chr6g0457921 28.919 370 220 13 12 365 4 346 6.08e-29 115
Msa0143990 MtrunA17_Chr1g0156901 27.222 360 218 13 10 354 24 354 7.04e-29 115
Msa0143990 MtrunA17_Chr8g0349331 28.701 331 179 9 33 358 32 310 7.78e-29 114
Msa0143990 MtrunA17_Chr4g0008851 28.571 378 226 15 4 365 1 350 1.19e-28 114
Msa0143990 MtrunA17_Chr4g0046151 30.220 364 209 16 15 359 16 353 2.06e-28 114
Msa0143990 MtrunA17_Chr1g0156891 28.612 353 214 12 15 354 21 348 2.41e-28 114
Msa0143990 MtrunA17_Chr2g0294301 29.275 345 210 11 36 369 35 356 3.44e-28 113
Msa0143990 MtrunA17_Chr1g0157001 28.896 308 191 11 60 362 63 347 3.47e-28 113
Msa0143990 MtrunA17_Chr8g0344931 29.700 367 198 12 15 356 5 336 3.77e-28 113
Msa0143990 MtrunA17_Chr3g0099151 30.172 348 193 13 35 362 86 403 3.99e-28 114
Msa0143990 MtrunA17_Chr1g0156921 27.624 362 213 14 10 353 16 346 4.69e-28 113
Msa0143990 MtrunA17_Chr5g0405831 28.997 369 205 14 11 354 13 349 7.96e-28 112
Msa0143990 MtrunA17_Chr3g0077571 29.107 347 207 11 28 364 22 339 1.94e-27 111
Msa0143990 MtrunA17_Chr5g0405821 29.363 361 215 13 11 354 13 350 2.62e-27 111
Msa0143990 MtrunA17_Chr5g0434621 29.073 313 176 11 68 367 62 341 3.10e-27 110
Msa0143990 MtrunA17_Chr3g0142921 29.641 334 196 14 34 354 34 341 3.81e-27 110
Msa0143990 MtrunA17_Chr7g0275021 28.226 372 228 12 7 365 5 350 4.32e-27 110
Msa0143990 MtrunA17_Chr3g0142941 29.217 332 199 12 34 354 45 351 5.98e-27 110
Msa0143990 MtrunA17_Chr3g0099161 28.818 347 204 10 35 365 91 410 6.75e-27 110
Msa0143990 MtrunA17_Chr3g0099231 27.746 346 208 10 35 365 27 345 2.16e-26 108
Msa0143990 MtrunA17_Chr3g0077581 28.024 339 204 11 35 358 35 348 4.72e-26 107
Msa0143990 MtrunA17_Chr3g0092131 27.701 361 219 14 15 362 5 336 7.06e-26 107
Msa0143990 MtrunA17_Chr2g0301551 30.164 305 167 11 82 372 37 309 1.19e-25 105
Msa0143990 MtrunA17_Chr8g0371481 26.667 345 209 13 34 362 39 355 2.01e-25 105
Msa0143990 MtrunA17_Chr2g0283541 33.333 228 136 8 153 373 75 293 4.81e-25 103
Msa0143990 MtrunA17_Chr1g0189901 27.826 345 206 11 36 365 31 347 6.51e-25 104
Msa0143990 MtrunA17_Chr3g0085231 27.628 333 196 8 35 357 30 327 9.28e-25 103
Msa0143990 MtrunA17_Chr1g0189931 28.571 350 197 14 36 365 32 348 9.87e-25 103
Msa0143990 MtrunA17_Chr4g0017431 26.648 364 216 11 13 357 8 339 9.91e-25 103
Msa0143990 MtrunA17_Chr2g0301571 30.097 309 166 12 82 376 37 309 1.01e-24 103
Msa0143990 MtrunA17_Chr1g0189891 30.086 349 188 16 36 365 29 340 1.19e-24 103
Msa0143990 MtrunA17_Chr5g0420811 29.412 306 182 9 14 308 11 293 3.86e-24 102
Msa0143990 MtrunA17_Chr7g0215961 27.793 367 216 13 9 365 9 336 5.85e-24 101
Msa0143990 MtrunA17_Chr8g0371471 26.163 344 211 13 34 362 39 354 5.24e-23 99.0
Msa0143990 MtrunA17_Chr4g0027571 30.837 227 135 5 144 362 1 213 8.46e-23 95.5
Msa0143990 MtrunA17_Chr4g0060811 26.912 353 218 14 31 369 23 349 3.02e-22 97.1
Msa0143990 MtrunA17_Chr1g0178931 25.641 351 208 14 28 363 27 339 7.13e-22 95.5
Msa0143990 MtrunA17_Chr5g0437421 26.549 339 215 10 35 360 31 348 3.99e-21 93.6
Msa0143990 MtrunA17_Chr8g0370951 27.174 368 217 14 8 354 4 341 9.73e-21 92.4
Msa0143990 MtrunA17_Chr7g0266061 25.000 340 203 12 37 362 43 344 1.73e-20 91.7
Msa0143990 MtrunA17_Chr2g0284991 25.352 355 227 10 12 357 9 334 3.71e-19 88.2
Msa0143990 MtrunA17_Chr7g0229581 33.548 155 91 3 208 362 4 146 9.14e-19 82.8
Msa0143990 MtrunA17_Chr2g0285001 26.706 337 202 14 35 358 32 336 1.18e-18 86.7
Msa0143990 MtrunA17_Chr3g0085881 26.586 331 201 12 35 357 32 328 1.43e-18 86.3
Msa0143990 MtrunA17_Chr8g0371491 26.409 337 209 13 35 358 35 345 1.47e-18 86.3
Msa0143990 MtrunA17_Chr1g0198351 24.765 319 202 12 37 349 44 330 2.89e-18 85.1
Msa0143990 MtrunA17_Chr2g0284951 26.479 355 219 12 12 357 9 330 4.85e-18 84.7
Msa0143990 MtrunA17_Chr6g0455661 29.064 203 116 5 165 358 267 450 3.61e-17 82.8
Msa0143990 MtrunA17_Chr6g0459921 27.234 235 137 6 142 358 121 339 3.68e-17 82.0
Msa0143990 MtrunA17_Chr2g0284921 26.866 335 203 13 35 358 33 336 1.02e-16 80.9
Msa0143990 MtrunA17_Chr8g0370981 26.277 411 214 15 12 362 19 400 1.31e-16 80.9
Msa0143990 MtrunA17_Chr8g0370961 28.061 196 124 5 164 357 41 221 1.49e-16 78.6
Msa0143990 MtrunA17_Chr2g0301561 29.741 232 135 8 82 299 37 254 2.28e-16 78.2
Msa0143990 MtrunA17_Chr1g0198391 26.975 367 194 17 37 368 34 361 6.73e-16 78.2
Msa0143990 MtrunA17_Chr3g0104801 40.476 126 64 5 34 148 42 167 8.35e-16 75.1
Msa0143990 MtrunA17_Chr8g0380031 27.273 264 158 9 35 283 83 327 1.80e-15 77.4
Msa0143990 MtrunA17_Chr1g0198381 25.075 335 208 12 37 362 3 303 2.79e-15 75.9
Msa0143990 MtrunA17_Chr5g0440501 27.004 237 148 7 131 358 6 226 1.64e-14 72.8
Msa0143990 MtrunA17_Chr6g0469521 36.634 101 61 1 211 311 31 128 9.19e-13 65.5
Msa0143990 MtrunA17_Chr7g0273111 39.326 89 51 2 12 98 11 98 2.06e-12 63.2
Msa0143990 MtrunA17_Chr4g0018571 29.630 162 86 6 209 362 28 169 3.28e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143990 AT3G26430.1 49.737 380 186 3 6 380 1 380 8.34e-135 390
Msa0143990 AT1G67830.1 49.014 355 168 4 32 381 26 372 1.10e-123 362
Msa0143990 AT5G14450.1 47.043 372 190 4 15 381 20 389 1.95e-118 349
Msa0143990 AT3G27950.1 46.933 375 178 8 13 378 8 370 2.17e-103 310
Msa0143990 AT1G54790.3 42.781 374 196 9 13 376 10 375 1.89e-91 280
Msa0143990 AT1G54790.1 41.509 371 200 8 16 376 11 374 6.86e-88 271
Msa0143990 AT4G01130.1 40.420 381 216 6 4 378 5 380 1.24e-85 265
Msa0143990 AT1G56670.1 40.691 376 200 8 10 380 16 373 1.09e-84 262
Msa0143990 AT1G09390.1 39.844 384 209 8 1 378 1 368 9.75e-83 257
Msa0143990 AT1G54790.2 38.791 397 200 9 16 376 11 400 6.88e-82 256
Msa0143990 AT3G05180.1 40.057 352 198 6 33 376 33 379 4.56e-79 248
Msa0143990 AT3G62280.1 39.368 348 184 8 35 375 35 362 1.18e-70 226
Msa0143990 AT4G01130.2 41.391 302 163 8 4 299 5 298 1.48e-66 214
Msa0143990 AT1G56670.2 41.781 292 158 6 10 299 16 297 4.56e-65 209
Msa0143990 AT1G28600.1 36.486 370 203 13 26 380 20 372 6.51e-58 194
Msa0143990 AT4G01130.3 38.176 296 175 5 89 378 1 294 1.00e-57 190
Msa0143990 AT1G28640.1 33.333 390 215 11 12 378 8 375 2.74e-54 184
Msa0143990 AT1G28650.1 33.077 390 216 12 12 378 10 377 5.88e-53 180
Msa0143990 AT1G28670.1 35.450 378 206 12 12 370 8 366 7.32e-53 180
Msa0143990 AT1G28580.1 32.041 387 226 11 10 378 10 377 2.84e-52 179
Msa0143990 AT1G31550.2 33.503 394 227 11 1 378 1 375 3.12e-52 179
Msa0143990 AT3G62280.2 38.909 275 152 6 35 305 35 297 3.91e-52 176
Msa0143990 AT1G28590.1 33.420 386 227 12 1 371 1 371 5.07e-52 178
Msa0143990 AT1G28610.2 34.190 389 212 15 1 370 1 364 1.19e-50 174
Msa0143990 AT5G45910.1 36.288 361 187 13 34 370 28 369 2.09e-50 173
Msa0143990 AT2G27360.1 33.420 383 215 11 9 371 7 369 3.65e-50 173
Msa0143990 AT1G28660.2 33.333 384 204 13 12 370 8 364 5.90e-50 172
Msa0143990 AT1G28660.1 33.506 385 203 14 12 370 8 365 3.61e-49 170
Msa0143990 AT1G31550.1 32.824 393 228 11 1 378 1 372 4.72e-49 170
Msa0143990 AT1G28570.1 31.969 391 222 14 10 378 6 374 4.90e-49 170
Msa0143990 AT3G48460.1 28.941 387 219 9 13 373 15 371 8.46e-45 159
Msa0143990 AT3G16370.1 33.533 334 190 11 35 358 29 340 3.80e-40 145
Msa0143990 AT1G28580.2 29.260 311 190 8 79 378 5 296 1.99e-35 132
Msa0143990 AT1G29670.2 27.869 366 228 11 4 358 67 407 2.85e-34 132
Msa0143990 AT1G29670.1 27.747 364 227 11 6 358 1 339 6.61e-34 129
Msa0143990 AT5G22810.1 31.965 341 196 12 35 362 33 350 6.94e-34 129
Msa0143990 AT5G03820.1 29.032 341 205 12 35 362 32 348 9.09e-34 129
Msa0143990 AT5G40990.1 30.882 340 206 9 36 365 37 357 1.40e-33 129
Msa0143990 AT5G45670.1 29.708 377 218 12 1 364 1 343 1.71e-33 128
Msa0143990 AT5G03820.2 29.032 341 205 12 35 362 60 376 2.05e-33 128
Msa0143990 AT1G06990.1 27.520 367 217 13 12 354 2 343 4.18e-33 127
Msa0143990 AT5G03810.1 28.863 343 202 12 35 362 29 344 1.41e-32 125
Msa0143990 AT5G42170.1 30.178 338 202 11 34 362 48 360 2.60e-32 125
Msa0143990 AT1G59406.1 28.333 360 224 11 12 362 6 340 3.15e-32 124
Msa0143990 AT1G59030.1 28.333 360 224 11 12 362 6 340 3.15e-32 124
Msa0143990 AT1G58725.1 28.333 360 224 11 12 362 6 340 3.15e-32 124
Msa0143990 AT2G04570.1 28.375 363 220 12 12 362 7 341 8.37e-32 123
Msa0143990 AT4G10950.2 28.947 342 208 11 35 365 70 387 9.31e-32 124
Msa0143990 AT4G26790.1 29.769 346 206 12 29 362 22 342 1.02e-31 123
Msa0143990 AT4G26790.2 29.769 346 206 12 29 362 22 342 1.02e-31 123
Msa0143990 AT2G42990.1 27.989 368 225 14 6 361 1 340 1.67e-31 122
Msa0143990 AT3G14225.1 32.565 347 203 12 36 371 37 363 3.90e-31 122
Msa0143990 AT3G14225.2 32.277 347 200 10 36 371 37 359 4.04e-31 122
Msa0143990 AT1G53940.2 30.914 372 218 11 14 365 7 359 6.96e-31 121
Msa0143990 AT5G63170.1 29.888 358 196 13 12 354 4 321 1.15e-30 120
Msa0143990 AT2G23540.1 28.895 353 199 14 36 365 48 371 1.73e-30 120
Msa0143990 AT5G08460.1 28.969 359 215 12 15 358 29 362 1.85e-30 120
Msa0143990 AT4G18970.1 27.844 334 208 9 35 358 27 337 2.26e-30 119
Msa0143990 AT3G04290.1 30.997 371 208 14 11 365 7 345 2.31e-30 120
Msa0143990 AT1G75900.1 27.596 337 206 12 34 358 41 351 2.47e-30 119
Msa0143990 AT1G20130.1 29.970 337 204 12 35 358 203 520 3.99e-30 121
Msa0143990 AT1G58430.1 29.532 342 198 12 28 353 27 341 4.28e-30 119
Msa0143990 AT4G18970.2 27.844 334 208 9 35 358 27 337 4.32e-30 120
Msa0143990 AT1G20130.2 29.882 338 205 12 34 358 182 500 5.29e-30 121
Msa0143990 AT2G30220.1 28.955 335 199 14 34 354 31 340 1.60e-29 117
Msa0143990 AT4G10950.1 28.613 346 208 12 35 369 70 387 1.91e-29 118
Msa0143990 AT2G31540.1 28.286 350 202 14 28 358 27 346 5.42e-29 115
Msa0143990 AT3G53100.1 28.947 342 202 13 35 362 28 342 5.96e-29 115
Msa0143990 AT2G24560.1 28.909 339 192 14 34 353 32 340 7.54e-29 115
Msa0143990 AT1G20132.1 29.042 334 204 12 35 358 60 370 1.01e-28 115
Msa0143990 AT2G30310.1 28.571 343 202 14 28 354 26 341 1.18e-28 115
Msa0143990 AT1G58520.3 28.955 335 201 11 35 362 29 333 1.27e-28 114
Msa0143990 AT1G58525.1 28.955 335 201 11 35 362 29 333 1.27e-28 114
Msa0143990 AT1G71250.1 27.200 375 235 12 3 365 9 357 1.35e-28 115
Msa0143990 AT5G15720.1 29.290 338 200 12 35 358 29 341 1.87e-28 114
Msa0143990 AT1G20120.1 29.799 349 209 12 34 369 76 401 4.79e-28 114
Msa0143990 AT5G45950.1 27.536 345 210 14 27 361 32 346 5.41e-28 113
Msa0143990 AT1G73610.1 28.614 339 192 11 36 362 35 335 8.51e-28 112
Msa0143990 AT1G53920.1 26.590 346 227 8 14 352 26 351 1.22e-27 112
Msa0143990 AT1G71120.1 28.070 342 204 10 23 352 18 329 2.02e-27 111
Msa0143990 AT3G50400.1 27.606 355 206 14 34 365 32 358 2.05e-27 112
Msa0143990 AT1G53990.1 30.000 380 218 13 10 371 1 350 3.96e-27 110
Msa0143990 AT1G29660.1 27.978 361 224 12 8 358 6 340 4.14e-27 110
Msa0143990 AT5G45960.1 29.514 288 180 11 36 311 47 323 7.43e-27 110
Msa0143990 AT5G33370.1 29.345 351 193 14 36 365 30 346 1.10e-26 109
Msa0143990 AT2G19060.1 28.895 353 194 15 35 370 29 341 1.83e-26 108
Msa0143990 AT5G37690.1 29.739 306 173 11 68 362 64 338 4.70e-26 107
Msa0143990 AT1G28570.3 31.100 209 131 5 175 378 11 211 5.20e-26 104
Msa0143990 AT1G33811.1 27.322 366 229 11 8 358 5 348 6.26e-26 107
Msa0143990 AT4G28780.1 27.778 342 210 10 36 365 31 347 7.25e-26 107
Msa0143990 AT1G23500.1 29.855 345 189 14 36 366 35 340 8.00e-26 107
Msa0143990 AT1G28570.2 29.437 231 149 6 154 378 80 302 1.16e-25 105
Msa0143990 AT1G54020.2 27.933 358 214 14 16 365 11 332 2.26e-25 106
Msa0143990 AT3G14820.1 27.401 354 222 10 18 362 14 341 2.63e-25 105
Msa0143990 AT1G71691.2 28.097 331 207 9 35 358 54 360 4.09e-25 105
Msa0143990 AT2G40250.1 26.706 337 210 13 36 358 36 349 5.76e-25 104
Msa0143990 AT5G18430.1 27.520 367 217 12 16 365 12 346 1.42e-24 103
Msa0143990 AT3G43550.1 28.669 293 184 9 16 299 10 286 1.87e-24 102
Msa0143990 AT1G75880.1 28.116 345 202 14 35 362 51 366 2.14e-24 103
Msa0143990 AT1G75930.1 26.989 352 210 11 28 366 21 338 2.67e-24 102
Msa0143990 AT1G75880.2 27.907 344 203 13 35 362 51 365 2.84e-24 103
Msa0143990 AT1G75890.2 28.024 339 202 12 35 358 46 357 3.73e-24 102
Msa0143990 AT1G75890.3 28.024 339 202 12 35 358 75 386 5.15e-24 102
Msa0143990 AT2G19050.1 27.299 348 204 9 35 370 30 340 7.87e-24 101
Msa0143990 AT2G24560.2 29.010 293 169 12 28 301 26 298 1.18e-23 100
Msa0143990 AT3G43570.1 25.281 356 203 10 16 362 10 311 2.25e-23 99.8
Msa0143990 AT1G53940.1 32.026 306 173 9 14 299 7 297 2.48e-23 99.4
Msa0143990 AT5G03610.1 27.027 333 202 12 37 359 44 345 6.56e-23 99.0
Msa0143990 AT2G19010.1 27.350 351 200 12 35 370 29 339 9.02e-23 98.6
Msa0143990 AT1G20135.1 27.922 308 193 11 13 308 6 296 1.39e-22 97.8
Msa0143990 AT2G19010.2 27.350 351 200 12 35 370 59 369 1.73e-22 98.2
Msa0143990 AT1G75890.1 27.273 352 201 13 35 358 46 370 1.78e-22 98.2
Msa0143990 AT1G54030.1 28.763 299 169 8 60 355 80 337 6.38e-22 97.1
Msa0143990 AT5G41890.1 28.363 342 202 15 38 358 33 352 7.08e-22 96.3
Msa0143990 AT1G75910.1 26.882 372 213 14 12 362 1 334 1.17e-21 95.1
Msa0143990 AT5G15720.2 29.749 279 167 10 35 299 29 292 1.32e-21 94.7
Msa0143990 AT5G03980.1 24.929 353 197 12 13 354 7 302 1.36e-21 94.7
Msa0143990 AT2G03980.2 27.811 338 199 15 33 355 40 347 2.22e-21 94.7
Msa0143990 AT2G03980.3 27.811 338 199 15 33 355 40 347 2.22e-21 94.7
Msa0143990 AT2G03980.1 27.811 338 199 15 33 355 40 347 2.22e-21 94.7
Msa0143990 AT2G03980.4 27.811 338 199 15 33 355 40 347 2.22e-21 94.7
Msa0143990 AT1G75920.2 26.934 349 210 12 26 362 19 334 4.51e-21 93.6
Msa0143990 AT1G54010.1 25.956 366 222 14 12 365 12 340 5.02e-21 94.0
Msa0143990 AT1G54000.1 24.658 365 228 14 12 365 12 340 6.42e-21 94.0
Msa0143990 AT5G37690.2 28.431 306 169 12 68 362 64 330 7.55e-21 93.2
Msa0143990 AT1G71691.3 28.421 285 181 8 24 299 41 311 7.63e-21 92.4
Msa0143990 AT1G28600.2 37.838 185 96 8 28 202 22 197 1.35e-20 89.7
Msa0143990 AT1G74460.1 27.181 298 181 10 70 358 62 332 3.74e-20 91.3
Msa0143990 AT2G19050.2 29.389 262 154 7 35 286 30 270 6.02e-20 89.4
Msa0143990 AT1G28610.1 37.968 187 93 9 28 202 22 197 8.66e-20 88.2
Msa0143990 AT5G15720.3 26.623 308 185 11 62 358 33 310 3.64e-19 87.8
Msa0143990 AT4G30140.1 27.545 334 195 9 35 358 32 328 1.10e-18 86.7
Msa0143990 AT5G33370.2 28.421 285 159 12 36 299 30 290 4.95e-18 84.7
Msa0143990 AT2G04020.1 30.631 222 135 8 33 246 40 250 6.14e-18 83.2
Msa0143990 AT2G04020.2 31.280 211 127 7 33 236 40 239 1.00e-17 83.6
Msa0143990 AT1G75920.1 25.676 370 203 13 26 362 14 344 1.78e-17 83.2
Msa0143990 AT1G71691.1 25.795 283 182 8 80 358 1 259 4.35e-16 78.2
Msa0143990 AT2G31550.1 23.913 230 148 8 140 363 2 210 8.42e-16 76.3
Msa0143990 AT3G14210.1 26.567 335 196 15 36 356 36 334 1.39e-14 75.1
Msa0143990 AT1G54020.1 25.806 279 170 10 89 365 3 246 1.45e-14 73.9
Msa0143990 AT1G54020.5 25.806 279 170 10 89 365 3 246 1.45e-14 73.9
Msa0143990 AT1G54020.3 25.806 279 170 10 89 365 3 246 1.45e-14 73.9
Msa0143990 AT3G09930.2 24.096 332 214 12 37 359 40 342 1.99e-14 74.3
Msa0143990 AT3G09930.1 24.096 332 214 12 37 359 40 342 1.99e-14 74.3
Msa0143990 AT1G54020.4 26.761 213 137 8 163 372 6 202 3.12e-13 69.3
Msa0143990 AT1G54030.2 28.326 233 129 7 60 286 80 280 8.26e-13 68.9
Msa0143990 AT4G16233.1 32.308 130 78 2 246 374 4 124 2.23e-12 64.3
Msa0143990 AT5G03600.1 23.423 333 210 12 35 359 13 308 2.59e-12 67.8
Msa0143990 AT5G03600.2 23.423 333 210 12 35 359 48 343 2.75e-12 67.8

Find 76 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTTGATCAAATCTCTTT+TGG 0.194746 1_4:-3248463 Msa0143990:CDS
TTTGGAGAAATAATCTTCTT+TGG 0.233825 1_4:+3249647 None:intergenic
GGGTTGTGCTCCTGTAATTT+TGG 0.238479 1_4:-3249064 Msa0143990:CDS
TATTGAATTTGAAGAGAAAA+TGG 0.242470 1_4:+3249856 None:intergenic
ATTTAGGGGCAAGATCATTT+TGG 0.244542 1_4:-3249107 Msa0143990:CDS
CAATGTGTTGAAGCAAATAT+TGG 0.252759 1_4:+3254315 None:intergenic
GGTCAAAATGATCTTACTAT+TGG 0.255111 1_4:-3249603 Msa0143990:CDS
ATCTAGAATATATACAATTT+AGG 0.259047 1_4:-3249123 Msa0143990:intron
ACCGATATCAAATACGTATA+AGG 0.280352 1_4:+3249623 None:intergenic
CGAATCATTATTGATTTCAT+AGG 0.296923 1_4:-3254159 Msa0143990:intron
TCTAGAATATATACAATTTA+GGG 0.304611 1_4:-3249122 Msa0143990:intron
GTCAAAATGATCTTACTATT+GGG 0.323581 1_4:-3249602 Msa0143990:CDS
GGAGCAACCATAAACATAAA+TGG 0.333844 1_4:-3248574 Msa0143990:CDS
AGTCCATATCTTAATTCTCT+TGG 0.343763 1_4:-3249967 Msa0143990:CDS
TTGGAGAAATAATCTTCTTT+GGG 0.350535 1_4:+3249648 None:intergenic
TCCCATGTGATTCTAGTAGA+TGG 0.361854 1_4:+3248520 None:intergenic
ACATGCCATATCTAGAGAAA+TGG 0.371448 1_4:+3248423 None:intergenic
TCCTCCCATTTCTCTAGATA+TGG 0.373294 1_4:-3248428 Msa0143990:CDS
TTTCCTGCCATATTTAGCTT+TGG 0.374076 1_4:-3254288 Msa0143990:CDS
CCTTTAGGTAGAATACTAGT+AGG 0.375719 1_4:+3249889 None:intergenic
TGAAGCACCAAAGCTAAATA+TGG 0.376452 1_4:+3254281 None:intergenic
AATGTGTTGAAGCAAATATT+GGG 0.376489 1_4:+3254316 None:intergenic
ATCAAATACGTATAAGGCTT+TGG 0.378131 1_4:+3249629 None:intergenic
ATGTAATTGTTTACTAGATC+TGG 0.381269 1_4:+3249537 None:intergenic
GCCTTATACGTATTTGATAT+CGG 0.387702 1_4:-3249624 Msa0143990:CDS
TTAAAATAAGTCTGTCCATA+TGG 0.393287 1_4:+3254210 None:intergenic
GGAAAATTAGCCAAAATTAC+AGG 0.393752 1_4:+3249054 None:intergenic
AATGGACTGAGTATTCCTTT+AGG 0.412825 1_4:+3249874 None:intergenic
GTCCATATCTTAATTCTCTT+GGG 0.414439 1_4:-3249966 Msa0143990:CDS
GGTGCTTCAAACGTTGATAC+TGG 0.415133 1_4:-3254267 Msa0143990:CDS
AAACGTTGATACTGGTGGTT+TGG 0.423737 1_4:-3254259 Msa0143990:CDS
CGAGCACCACCTTCTCCATA+TGG 0.430156 1_4:-3254225 Msa0143990:CDS
CGTTAGCTGCCTCAGTGTAA+TGG 0.436806 1_4:+3248491 None:intergenic
ATTAAGATATGGACTTGGAT+AGG 0.438328 1_4:+3249975 None:intergenic
GACCCAAGAGAATTAAGATA+TGG 0.442921 1_4:+3249964 None:intergenic
TAGCCACAACATGCCACATA+TGG 0.448388 1_4:+3248628 None:intergenic
GTTAGCTGCCTCAGTGTAAT+GGG 0.451864 1_4:+3248492 None:intergenic
CATGCCATATCTAGAGAAAT+GGG 0.458578 1_4:+3248424 None:intergenic
TAACTATCCTTTATTGCAGA+TGG 0.470249 1_4:+3249033 None:intergenic
CTATGAAATCAATAATGATT+CGG 0.473526 1_4:+3254160 None:intergenic
ACAAAACTCATTAGAGATCA+AGG 0.473797 1_4:-3249805 Msa0143990:intron
ATTACAGGAGCACAACCCTT+TGG 0.485737 1_4:+3249069 None:intergenic
TGGCGAGAATTGAGCTCTCT+AGG 0.506869 1_4:-3254386 Msa0143990:CDS
TATGTGGCATGTTGTGGCTA+TGG 0.508600 1_4:-3248625 Msa0143990:CDS
AGGATTTGAGCTTCCATATG+TGG 0.510385 1_4:-3248641 Msa0143990:CDS
TTAAGATATGGACTTGGATA+GGG 0.511053 1_4:+3249976 None:intergenic
TATAACATTGGTGCTGGCTG+TGG 0.517309 1_4:-3248595 Msa0143990:CDS
CCTACTAGTATTCTACCTAA+AGG 0.522440 1_4:-3249889 Msa0143990:CDS
TCTGCAATAAAGGATAGTTA+TGG 0.538464 1_4:-3249030 Msa0143990:CDS
GGTGCAAACTTCGCAACAGC+AGG 0.544211 1_4:-3249928 Msa0143990:CDS
CTTCCATATGTGGCATGTTG+TGG 0.547714 1_4:-3248631 Msa0143990:CDS
TGGAGAAGGTGGTGCTCGAA+AGG 0.553217 1_4:+3254230 None:intergenic
CTTTAGGTAGAATACTAGTA+GGG 0.559910 1_4:+3249890 None:intergenic
CTTGGGTCAAACTTCACACA+TGG 0.560034 1_4:-3249949 Msa0143990:CDS
GATACACAGCACAGGACCAA+AGG 0.566219 1_4:-3249085 Msa0143990:CDS
GCACCAAAGCTAAATATGGC+AGG 0.569703 1_4:+3254285 None:intergenic
GTCTGTCCATATGGAGAAGG+TGG 0.576766 1_4:+3254219 None:intergenic
GGAGAGTATAACATTGGTGC+TGG 0.583557 1_4:-3248601 Msa0143990:CDS
TAAGTCTGTCCATATGGAGA+AGG 0.590479 1_4:+3254216 None:intergenic
ATACACAGCACAGGACCAAA+GGG 0.590764 1_4:-3249084 Msa0143990:CDS
AGAGAATTAAGATATGGACT+TGG 0.598236 1_4:+3249970 None:intergenic
ATCCATCTACTAGAATCACA+TGG 0.598832 1_4:-3248522 Msa0143990:CDS
ACATATGTGATTGCAGCAAG+AGG 0.602551 1_4:+3248925 None:intergenic
AGCACAATCAAAGTCACAAG+TGG 0.609410 1_4:+3254357 None:intergenic
CAATTACATAGAGAATATCA+AGG 0.612371 1_4:-3249523 Msa0143990:intron
GTTTACTAGATCTGGTACAG+TGG 0.613515 1_4:+3249545 None:intergenic
TCTACTAGAATCACATGGGA+TGG 0.627896 1_4:-3248517 Msa0143990:CDS
TATGGAGGAGAGTATAACAT+TGG 0.632782 1_4:-3248607 Msa0143990:CDS
GCTTCAAACGTTGATACTGG+TGG 0.639155 1_4:-3254264 Msa0143990:CDS
TCCATCTACTAGAATCACAT+GGG 0.644001 1_4:-3248521 Msa0143990:CDS
GTGGCATGTTGTGGCTATGG+AGG 0.654822 1_4:-3248622 Msa0143990:CDS
ATGTGTTGAAGCAAATATTG+GGG 0.677724 1_4:+3254317 None:intergenic
CTAGAATATATACAATTTAG+GGG 0.689000 1_4:-3249121 Msa0143990:intron
GCCATATCTAGAGAAATGGG+AGG 0.708155 1_4:+3248427 None:intergenic
TGTGTTGAAGCAAATATTGG+GGG 0.774403 1_4:+3254318 None:intergenic
GGATGGTACCCATTACACTG+AGG 0.801280 1_4:-3248500 Msa0143990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATCAATAATTAG+TGG - chr1_4:3248881-3248900 Msa0143990:CDS 10.0%
!!! TTTTGTTAATAAATTATTGT+TGG + chr1_4:3250113-3250132 None:intergenic 10.0%
!! TTGATTAAAAGAATAATAAT+GGG + chr1_4:3250167-3250186 None:intergenic 10.0%
!! TTTGATTAAAAGAATAATAA+TGG + chr1_4:3250168-3250187 None:intergenic 10.0%
!! ATCAAATAATTTCAATAATA+AGG - chr1_4:3250182-3250201 Msa0143990:intron 10.0%
!! TCTTAAAATCAATATTAATT+AGG - chr1_4:3250303-3250322 Msa0143990:intron 10.0%
!!! CTTTATAAATGTATTAATTT+TGG - chr1_4:3250484-3250503 Msa0143990:intron 10.0%
!! TTTATATTATGTTCAAAAAA+AGG + chr1_4:3250576-3250595 None:intergenic 10.0%
!! TAAATAAAACAAATGATAAA+TGG - chr1_4:3251069-3251088 Msa0143990:intron 10.0%
!!! TTGATATAATAGTTTTATTT+TGG + chr1_4:3251185-3251204 None:intergenic 10.0%
!! AAATAAAACTATTATATCAA+TGG - chr1_4:3251185-3251204 Msa0143990:intron 10.0%
!!! TTTTGTTAATAAATTATTGT+TGG + chr1_4:3250113-3250132 None:intergenic 10.0%
!! TTGATTAAAAGAATAATAAT+GGG + chr1_4:3250167-3250186 None:intergenic 10.0%
!! TTTGATTAAAAGAATAATAA+TGG + chr1_4:3250168-3250187 None:intergenic 10.0%
!! ATCAAATAATTTCAATAATA+AGG - chr1_4:3250182-3250201 Msa0143990:intron 10.0%
!! TCTTAAAATCAATATTAATT+AGG - chr1_4:3250303-3250322 Msa0143990:intron 10.0%
!!! CTTTATAAATGTATTAATTT+TGG - chr1_4:3250484-3250503 Msa0143990:intron 10.0%
!! TTTATATTATGTTCAAAAAA+AGG + chr1_4:3250576-3250595 None:intergenic 10.0%
!! TAAATAAAACAAATGATAAA+TGG - chr1_4:3251069-3251088 Msa0143990:intron 10.0%
!!! ATTGATTTAATAGTTATATT+TGG + chr1_4:3252597-3252616 None:intergenic 10.0%
!! AAATATAACTATTAAATCAA+TGG - chr1_4:3252596-3252615 Msa0143990:intron 10.0%
!!! ATATTTTAATTTAAAGTTGA+AGG - chr1_4:3253821-3253840 Msa0143990:intron 10.0%
!!! ATTTATTAATCTTTTAAGGT+AGG + chr1_4:3248917-3248936 None:intergenic 15.0%
!!! CTACATTTATTAATCTTTTA+AGG + chr1_4:3248921-3248940 None:intergenic 15.0%
!! AATCTATTTGTCAAAATTAT+TGG - chr1_4:3249525-3249544 Msa0143990:CDS 15.0%
!! AATTATTTACTTTATTCGAA+AGG - chr1_4:3249685-3249704 Msa0143990:intron 15.0%
!! ATTAGTTAACAAAATATAGT+GGG - chr1_4:3250209-3250228 Msa0143990:intron 15.0%
!!! TTGATTTTAAGAATAATACA+GGG + chr1_4:3250295-3250314 None:intergenic 15.0%
!!! ATTGATTTTAAGAATAATAC+AGG + chr1_4:3250296-3250315 None:intergenic 15.0%
!! AAATCAATATTAATTAGGTA+CGG - chr1_4:3250308-3250327 Msa0143990:intron 15.0%
!! AAAAAATTGACAAAATTATC+AGG + chr1_4:3250443-3250462 None:intergenic 15.0%
!!! GATAATTTTGTCAATTTTTT+TGG - chr1_4:3250443-3250462 Msa0143990:intron 15.0%
!! TAAATGTTGAACAAAATAAA+AGG - chr1_4:3250600-3250619 Msa0143990:intron 15.0%
!! ACATTTACATGAAAATAAAA+TGG - chr1_4:3250666-3250685 Msa0143990:intron 15.0%
!!! GCAAAAAAAATATTTTGTTT+TGG + chr1_4:3250702-3250721 None:intergenic 15.0%
!!! AATATAACGAATTTTGATTT+TGG + chr1_4:3250760-3250779 None:intergenic 15.0%
!!! GTTTTTTTTTTCTTAAGATT+TGG + chr1_4:3251009-3251028 None:intergenic 15.0%
!!! TATAATAGTTTTATTTTGGA+TGG + chr1_4:3251181-3251200 None:intergenic 15.0%
!! ATTAGTTAACAAAATATAGT+GGG - chr1_4:3250209-3250228 Msa0143990:intron 15.0%
!!! TTGATTTTAAGAATAATACA+GGG + chr1_4:3250295-3250314 None:intergenic 15.0%
!!! ATTGATTTTAAGAATAATAC+AGG + chr1_4:3250296-3250315 None:intergenic 15.0%
!! AAATCAATATTAATTAGGTA+CGG - chr1_4:3250308-3250327 Msa0143990:intron 15.0%
!! AAAAAATTGACAAAATTATC+AGG + chr1_4:3250443-3250462 None:intergenic 15.0%
!!! GATAATTTTGTCAATTTTTT+TGG - chr1_4:3250443-3250462 Msa0143990:intron 15.0%
!! TAAATGTTGAACAAAATAAA+AGG - chr1_4:3250600-3250619 Msa0143990:intron 15.0%
!! ACATTTACATGAAAATAAAA+TGG - chr1_4:3250666-3250685 Msa0143990:intron 15.0%
!!! GCAAAAAAAATATTTTGTTT+TGG + chr1_4:3250702-3250721 None:intergenic 15.0%
!!! AATATAACGAATTTTGATTT+TGG + chr1_4:3250760-3250779 None:intergenic 15.0%
!!! GTTTTTTTTTTCTTAAGATT+TGG + chr1_4:3251009-3251028 None:intergenic 15.0%
!! ATTTAATAGTTATATTTGGA+TGG + chr1_4:3252593-3252612 None:intergenic 15.0%
!!! CATTTCAAAATTTTCTTTAT+AGG - chr1_4:3253105-3253124 Msa0143990:intron 15.0%
!! CAGATAAATTTATCAAATAA+GGG + chr1_4:3253311-3253330 None:intergenic 15.0%
!! ATTATATATAAACATAGGAT+AGG + chr1_4:3253602-3253621 None:intergenic 15.0%
!! AGCATATTATATATAAACAT+AGG + chr1_4:3253607-3253626 None:intergenic 15.0%
!!! ATCTAGAATATATACAATTT+AGG - chr1_4:3253675-3253694 Msa0143990:intron 15.0%
!!! TCTAGAATATATACAATTTA+GGG - chr1_4:3253676-3253695 Msa0143990:intron 15.0%
!!! ACTTATTTTAATAGATCAAC+TGG - chr1_4:3248600-3248619 Msa0143990:CDS 20.0%
!! CTATGAAATCAATAATGATT+CGG + chr1_4:3248641-3248660 None:intergenic 20.0%
!! AGATTAATAAATGTAGTGTT+TGG - chr1_4:3248925-3248944 Msa0143990:CDS 20.0%
!! AATAGAGTTTGAATCTTATA+AGG + chr1_4:3249756-3249775 None:intergenic 20.0%
!! TCTATTTAAAAGATCTCATT+AGG - chr1_4:3249783-3249802 Msa0143990:intron 20.0%
!! ACTTGGAGAAAAATATATAA+CGG + chr1_4:3249839-3249858 None:intergenic 20.0%
!!! GATTAGTTAACAAAATATAG+TGG - chr1_4:3250208-3250227 Msa0143990:intron 20.0%
!!! TGATTTTAAGAATAATACAG+GGG + chr1_4:3250294-3250313 None:intergenic 20.0%
!! ATGTTAAAATTGTATTCGTT+AGG + chr1_4:3250546-3250565 None:intergenic 20.0%
!!! GATTAGTTAACAAAATATAG+TGG - chr1_4:3250208-3250227 Msa0143990:intron 20.0%
!!! TGATTTTAAGAATAATACAG+GGG + chr1_4:3250294-3250313 None:intergenic 20.0%
!! ATGTTAAAATTGTATTCGTT+AGG + chr1_4:3250546-3250565 None:intergenic 20.0%
!! TATTGAATTTGAAGAGAAAA+TGG + chr1_4:3252945-3252964 None:intergenic 20.0%
!!! TCCATTGTTTATGATATTTT+TGG - chr1_4:3253033-3253052 Msa0143990:intron 20.0%
!! ACCAAAAATATCATAAACAA+TGG + chr1_4:3253037-3253056 None:intergenic 20.0%
!!! ATTGTTTATGATATTTTTGG+TGG - chr1_4:3253036-3253055 Msa0143990:intron 20.0%
!!! TTCAAAATTTTCTTTATAGG+AGG - chr1_4:3253108-3253127 Msa0143990:intron 20.0%
!! GCAGATAAATTTATCAAATA+AGG + chr1_4:3253312-3253331 None:intergenic 20.0%
!!! ACATTAGTTCTTTTTTTTAG+AGG - chr1_4:3253344-3253363 Msa0143990:intron 20.0%
!! ATATCATGAGAATCTATTAT+AGG + chr1_4:3253567-3253586 None:intergenic 20.0%
!! CTAGAATATATACAATTTAG+GGG - chr1_4:3253677-3253696 Msa0143990:intron 20.0%
!!! CACATATAAATACATAGTTT+TGG + chr1_4:3254103-3254122 None:intergenic 20.0%
!!! TTTTGTACCATTTATGTTTA+TGG + chr1_4:3254234-3254253 None:intergenic 20.0%
! AATGTGTTGAAGCAAATATT+GGG + chr1_4:3248485-3248504 None:intergenic 25.0%
! TTAAAATAAGTCTGTCCATA+TGG + chr1_4:3248591-3248610 None:intergenic 25.0%
!!! CGAATCATTATTGATTTCAT+AGG - chr1_4:3248639-3248658 Msa0143990:CDS 25.0%
!! ATTGATTTCATAGGTAATAC+TGG - chr1_4:3248648-3248667 Msa0143990:intron 25.0%
! GAATGAGATAAGAGAAAAAA+TGG + chr1_4:3248674-3248693 None:intergenic 25.0%
! ATTCTCTATTAGCATATCTA+AGG - chr1_4:3248690-3248709 Msa0143990:intron 25.0%
!!! TATTAATCTTTTAAGGTAGG+TGG + chr1_4:3248914-3248933 None:intergenic 25.0%
!!! ATGTTTTTACGACAAACAAT+CGG + chr1_4:3249120-3249139 None:intergenic 25.0%
! CTACCAAATGTGTATTTAAA+GGG + chr1_4:3249291-3249310 None:intergenic 25.0%
! ACTACCAAATGTGTATTTAA+AGG + chr1_4:3249292-3249311 None:intergenic 25.0%
!!! AGATTGCTTTTATTACAATG+AGG + chr1_4:3249458-3249477 None:intergenic 25.0%
! GTTCTATTTGATCATGTAAT+TGG + chr1_4:3249725-3249744 None:intergenic 25.0%
!! ATGGGAAAGTTACATTTTAA+AGG - chr1_4:3249925-3249944 Msa0143990:CDS 25.0%
!! TGGGAAAGTTACATTTTAAA+GGG - chr1_4:3249926-3249945 Msa0143990:CDS 25.0%
! TTATAGAGTAATAATGAGCA+GGG + chr1_4:3250078-3250097 None:intergenic 25.0%
! ATTATAGAGTAATAATGAGC+AGG + chr1_4:3250079-3250098 None:intergenic 25.0%
!!! GATTTTAAGAATAATACAGG+GGG + chr1_4:3250293-3250312 None:intergenic 25.0%
! ATATAATAAGTCAAGCAGTT+CGG + chr1_4:3250393-3250412 None:intergenic 25.0%
!!! TTGCACATGACAATTTTTTT+CGG + chr1_4:3250833-3250852 None:intergenic 25.0%
!! TGGTTATTAAATGATTTTCG+TGG - chr1_4:3251089-3251108 Msa0143990:intron 25.0%
!! GGTTATTAAATGATTTTCGT+GGG - chr1_4:3251090-3251109 Msa0143990:intron 25.0%
!! GTTATTAAATGATTTTCGTG+GGG - chr1_4:3251091-3251110 Msa0143990:intron 25.0%
! AAACTTCAAAGAATACATAC+CGG - chr1_4:3251281-3251300 Msa0143990:intron 25.0%
!! ATGGGAAAGTTACATTTTAA+AGG - chr1_4:3249925-3249944 Msa0143990:CDS 25.0%
!! TGGGAAAGTTACATTTTAAA+GGG - chr1_4:3249926-3249945 Msa0143990:CDS 25.0%
! TTATAGAGTAATAATGAGCA+GGG + chr1_4:3250078-3250097 None:intergenic 25.0%
! ATTATAGAGTAATAATGAGC+AGG + chr1_4:3250079-3250098 None:intergenic 25.0%
!!! GATTTTAAGAATAATACAGG+GGG + chr1_4:3250293-3250312 None:intergenic 25.0%
! ATATAATAAGTCAAGCAGTT+CGG + chr1_4:3250393-3250412 None:intergenic 25.0%
!!! ATTGCACATGACAATTTTTT+CGG + chr1_4:3250834-3250853 None:intergenic 25.0%
!! TGGTTATTAAATGATTTTCG+TGG - chr1_4:3251089-3251108 Msa0143990:intron 25.0%
!! GGTTATTAAATGATTTTCGT+GGG - chr1_4:3251090-3251109 Msa0143990:intron 25.0%
!! GTTATTAAATGATTTTCGTG+GGG - chr1_4:3251091-3251110 Msa0143990:intron 25.0%
!!! GATTTGTTGAAGTTTGTTAT+CGG + chr1_4:3252688-3252707 None:intergenic 25.0%
! GAAATGAAGAAAGAAAAAAG+AGG + chr1_4:3253091-3253110 None:intergenic 25.0%
! TTGGAGAAATAATCTTCTTT+GGG + chr1_4:3253153-3253172 None:intergenic 25.0%
! TTTGGAGAAATAATCTTCTT+TGG + chr1_4:3253154-3253173 None:intergenic 25.0%
! GTCAAAATGATCTTACTATT+GGG - chr1_4:3253196-3253215 Msa0143990:intron 25.0%
! ATGTAATTGTTTACTAGATC+TGG + chr1_4:3253264-3253283 None:intergenic 25.0%
! CAATTACATAGAGAATATCA+AGG - chr1_4:3253275-3253294 Msa0143990:intron 25.0%
!!! TAGAAGTTATTTTCAAGTGT+TGG - chr1_4:3253497-3253516 Msa0143990:intron 25.0%
!! TAATTTTCCATCTGCAATAA+AGG - chr1_4:3253758-3253777 Msa0143990:intron 25.0%
!!! TTTGTAAAAAGAGAGTACTT+AGG + chr1_4:3253912-3253931 None:intergenic 25.0%
! TTTACAAACCCGAAAAAATA+TGG - chr1_4:3253924-3253943 Msa0143990:intron 25.0%
!!! TTTGACTCACCATATTTTTT+CGG + chr1_4:3253936-3253955 None:intergenic 25.0%
!!! TTAGTGTTTGTTTTGATTGA+CGG - chr1_4:3253978-3253997 Msa0143990:intron 25.0%
! TGAAAGCTTCATTAATATGT+AGG - chr1_4:3254137-3254156 Msa0143990:intron 25.0%
ATGTGTTGAAGCAAATATTG+GGG + chr1_4:3248484-3248503 None:intergenic 30.0%
CAATGTGTTGAAGCAAATAT+TGG + chr1_4:3248486-3248505 None:intergenic 30.0%
! TTTACCATCTAAAATGGCAA+AGG + chr1_4:3248808-3248827 None:intergenic 30.0%
!! TGTGGTTTTACCATCTAAAA+TGG + chr1_4:3248814-3248833 None:intergenic 30.0%
! TTTTAGATGGTAAAACCACA+AGG - chr1_4:3248814-3248833 Msa0143990:intron 30.0%
ATTGTTAAGTTAACACCTTG+TGG + chr1_4:3248832-3248851 None:intergenic 30.0%
CAAATTATCCATATAGCTCA+CGG - chr1_4:3248980-3248999 Msa0143990:CDS 30.0%
AAATTATCCATATAGCTCAC+GGG - chr1_4:3248981-3249000 Msa0143990:CDS 30.0%
!! TGTTTTTACGACAAACAATC+GGG + chr1_4:3249119-3249138 None:intergenic 30.0%
AGACCCTTTAAATACACATT+TGG - chr1_4:3249285-3249304 Msa0143990:intron 30.0%
! CACATTTGGTAGTTATCTAT+TGG - chr1_4:3249299-3249318 Msa0143990:intron 30.0%
AGAGAGAGAGTTTAAATACT+TGG + chr1_4:3249363-3249382 None:intergenic 30.0%
ACTATCTAATTGATTACCTC+TGG - chr1_4:3249591-3249610 Msa0143990:CDS 30.0%
AGATTCAAACTCTATTTGAG+AGG - chr1_4:3249760-3249779 Msa0143990:intron 30.0%
! ATTTTATTGTTTGCCTCAAC+CGG + chr1_4:3249968-3249987 None:intergenic 30.0%
TGTTTGCATGTTCAGAAAAT+TGG + chr1_4:3250013-3250032 None:intergenic 30.0%
TCGACTTTATGACAGATTTA+AGG + chr1_4:3250806-3250825 None:intergenic 30.0%
!! AAAAAGTATCAACCATTACC+AGG - chr1_4:3251142-3251161 Msa0143990:intron 30.0%
!! GGTATGTATTCTTTGAAGTT+TGG + chr1_4:3251282-3251301 None:intergenic 30.0%
!!! TATTTTTTGTTTGCCTCAAC+CGG + chr1_4:3251384-3251403 None:intergenic 30.0%
TGTTTGCATGTTCAGAAAAT+TGG + chr1_4:3250013-3250032 None:intergenic 30.0%
TCGACTTTATGACAGATTTA+AGG + chr1_4:3250806-3250825 None:intergenic 30.0%
!! AAAAAGTATCAACCATTACC+AGG - chr1_4:3251142-3251161 Msa0143990:intron 30.0%
ATAGCTTATTGTAGCTCTTA+GGG - chr1_4:3252712-3252731 Msa0143990:intron 30.0%
TTAAGATATGGACTTGGATA+GGG + chr1_4:3252825-3252844 None:intergenic 30.0%
ATTAAGATATGGACTTGGAT+AGG + chr1_4:3252826-3252845 None:intergenic 30.0%
AGAGAATTAAGATATGGACT+TGG + chr1_4:3252831-3252850 None:intergenic 30.0%
AGTCCATATCTTAATTCTCT+TGG - chr1_4:3252831-3252850 Msa0143990:intron 30.0%
GTCCATATCTTAATTCTCTT+GGG - chr1_4:3252832-3252851 Msa0143990:intron 30.0%
CTTTAGGTAGAATACTAGTA+GGG + chr1_4:3252911-3252930 None:intergenic 30.0%
ACAAAACTCATTAGAGATCA+AGG - chr1_4:3252993-3253012 Msa0143990:intron 30.0%
!! GGTGGTTCTAAGTTTAAATA+AGG - chr1_4:3253054-3253073 Msa0143990:intron 30.0%
ATCAAATACGTATAAGGCTT+TGG + chr1_4:3253172-3253191 None:intergenic 30.0%
GCCTTATACGTATTTGATAT+CGG - chr1_4:3253174-3253193 Msa0143990:intron 30.0%
ACCGATATCAAATACGTATA+AGG + chr1_4:3253178-3253197 None:intergenic 30.0%
GGTCAAAATGATCTTACTAT+TGG - chr1_4:3253195-3253214 Msa0143990:intron 30.0%
!!! GATCTTACTATTGGGTTTTT+TGG - chr1_4:3253204-3253223 Msa0143990:intron 30.0%
! TTCCGCTCTTTTTATTGTAT+AGG - chr1_4:3253443-3253462 Msa0143990:intron 30.0%
! TCCGCTCTTTTTATTGTATA+GGG - chr1_4:3253444-3253463 Msa0143990:intron 30.0%
ACCCTATACAATAAAAAGAG+CGG + chr1_4:3253448-3253467 None:intergenic 30.0%
!!! CAATGTCTTGTTTTCATGAT+TGG + chr1_4:3253534-3253553 None:intergenic 30.0%
ACTAATGAAATGAAACTTGC+TGG - chr1_4:3253650-3253669 Msa0143990:intron 30.0%
GGAAAATTAGCCAAAATTAC+AGG + chr1_4:3253747-3253766 None:intergenic 30.0%
TAACTATCCTTTATTGCAGA+TGG + chr1_4:3253768-3253787 None:intergenic 30.0%
TCTGCAATAAAGGATAGTTA+TGG - chr1_4:3253768-3253787 Msa0143990:intron 30.0%
!!! TTGACTCACCATATTTTTTC+GGG + chr1_4:3253935-3253954 None:intergenic 30.0%
!!! AATACATAGTTTTGGACTTG+CGG + chr1_4:3254095-3254114 None:intergenic 30.0%
! GTCTTTGATCAAATCTCTTT+TGG - chr1_4:3254335-3254354 Msa0143990:CDS 30.0%
TGTGTTGAAGCAAATATTGG+GGG + chr1_4:3248483-3248502 None:intergenic 35.0%
! TTTCCTGCCATATTTAGCTT+TGG - chr1_4:3248510-3248529 Msa0143990:CDS 35.0%
! TGAAGCACCAAAGCTAAATA+TGG + chr1_4:3248520-3248539 None:intergenic 35.0%
! TCAACTGGAAGATTTTCTGA+TGG - chr1_4:3248615-3248634 Msa0143990:CDS 35.0%
ACACTTGAATAGAAAGCAAG+CGG - chr1_4:3248761-3248780 Msa0143990:intron 35.0%
CAAATTGTCCATATAGCTCA+CGG - chr1_4:3249015-3249034 Msa0143990:CDS 35.0%
AAATTGTCCATATAGCTCAC+GGG - chr1_4:3249016-3249035 Msa0143990:CDS 35.0%
! ATTCACACAATTTTGCGAGA+GGG + chr1_4:3249094-3249113 None:intergenic 35.0%
TTTAAACTCTCTCTCTCTCT+AGG - chr1_4:3249367-3249386 Msa0143990:intron 35.0%
!! TTCTAAGTACTTGAGTTGAG+AGG + chr1_4:3249865-3249884 None:intergenic 35.0%
TCTCAACTCAAGTACTTAGA+AGG - chr1_4:3249864-3249883 Msa0143990:CDS 35.0%
CTCAACTCAAGTACTTAGAA+GGG - chr1_4:3249865-3249884 Msa0143990:CDS 35.0%
AAATGTAACTTTCCCATCCT+GGG + chr1_4:3249922-3249941 None:intergenic 35.0%
AAAATGTAACTTTCCCATCC+TGG + chr1_4:3249923-3249942 None:intergenic 35.0%
CAGAAAATTGGTCAGGAAAA+AGG + chr1_4:3250001-3250020 None:intergenic 35.0%
AAAAATCGACGATTCCAAAG+GGG + chr1_4:3250883-3250902 None:intergenic 35.0%
CAAAAATCGACGATTCCAAA+GGG + chr1_4:3250884-3250903 None:intergenic 35.0%
ATGTTTGACCCGATACAATA+TGG + chr1_4:3250919-3250938 None:intergenic 35.0%
ATTGTATCGGGTCAAACATA+CGG - chr1_4:3250920-3250939 Msa0143990:intron 35.0%
AGTATTGTGTGACCAATATG+TGG + chr1_4:3251118-3251137 None:intergenic 35.0%
CAGGATTAATTACCTGGTAA+TGG + chr1_4:3251157-3251176 None:intergenic 35.0%
CATTACCAGGTAATTAATCC+TGG - chr1_4:3251155-3251174 Msa0143990:intron 35.0%
!!! TAGTTTTATTTTGGATGGCC+AGG + chr1_4:3251176-3251195 None:intergenic 35.0%
!!! GGATAGTTTTTTCCCATGAT+GGG + chr1_4:3251227-3251246 None:intergenic 35.0%
!!! TGGATAGTTTTTTCCCATGA+TGG + chr1_4:3251228-3251247 None:intergenic 35.0%
! TAAGTGGTGGAGTTTAGTAT+GGG + chr1_4:3251253-3251272 None:intergenic 35.0%
TGAAGTTTGGATCTTCTAAG+TGG + chr1_4:3251269-3251288 None:intergenic 35.0%
AAATGTAACTTTCCCATCCT+GGG + chr1_4:3249922-3249941 None:intergenic 35.0%
AAAATGTAACTTTCCCATCC+TGG + chr1_4:3249923-3249942 None:intergenic 35.0%
CAGAAAATTGGTCAGGAAAA+AGG + chr1_4:3250001-3250020 None:intergenic 35.0%
AAAAATCGACGATTCCAAAG+GGG + chr1_4:3250883-3250902 None:intergenic 35.0%
CAAAAATCGACGATTCCAAA+GGG + chr1_4:3250884-3250903 None:intergenic 35.0%
ATGTTTGACCCGATACAATA+TGG + chr1_4:3250919-3250938 None:intergenic 35.0%
ATTGTATCGGGTCAAACATA+CGG - chr1_4:3250920-3250939 Msa0143990:intron 35.0%
AGTATTGTGTGACCAATATG+TGG + chr1_4:3251118-3251137 None:intergenic 35.0%
CAGGATTAATTACCTGGTAA+TGG + chr1_4:3251157-3251176 None:intergenic 35.0%
CATTACCAGGTAATTAATCC+TGG - chr1_4:3251155-3251174 Msa0143990:intron 35.0%
ATAGTTATATTTGGATGGCC+AGG + chr1_4:3252588-3252607 None:intergenic 35.0%
!!! GGATAGTTTTTTCCCATGAT+GGG + chr1_4:3251227-3251246 None:intergenic 35.0%
!!! TGGATAGTTTTTTCCCATGA+TGG + chr1_4:3251228-3251247 None:intergenic 35.0%
ATGTAGGTGGAGTTTAGTAT+GGG + chr1_4:3252664-3252683 None:intergenic 35.0%
TATGTAGGTGGAGTTTAGTA+TGG + chr1_4:3252665-3252684 None:intergenic 35.0%
!! GAAGTTTGTTATCGGTATGT+AGG + chr1_4:3252680-3252699 None:intergenic 35.0%
CATAGCTTATTGTAGCTCTT+AGG - chr1_4:3252711-3252730 Msa0143990:intron 35.0%
GACCCAAGAGAATTAAGATA+TGG + chr1_4:3252837-3252856 None:intergenic 35.0%
CCTTTAGGTAGAATACTAGT+AGG + chr1_4:3252912-3252931 None:intergenic 35.0%
CCTACTAGTATTCTACCTAA+AGG - chr1_4:3252909-3252928 Msa0143990:intron 35.0%
!! AATGGACTGAGTATTCCTTT+AGG + chr1_4:3252927-3252946 None:intergenic 35.0%
AATAAAAAGAGCGGAAAGAC+AGG + chr1_4:3253439-3253458 None:intergenic 35.0%
! ATTTAGGGGCAAGATCATTT+TGG - chr1_4:3253691-3253710 Msa0143990:intron 35.0%
! TATGGAGGAGAGTATAACAT+TGG - chr1_4:3254191-3254210 Msa0143990:CDS 35.0%
GGAGCAACCATAAACATAAA+TGG - chr1_4:3254224-3254243 Msa0143990:CDS 35.0%
AATGGTACAAAAACTGTTGC+AGG - chr1_4:3254242-3254261 Msa0143990:CDS 35.0%
ATCCATCTACTAGAATCACA+TGG - chr1_4:3254276-3254295 Msa0143990:CDS 35.0%
TCCATCTACTAGAATCACAT+GGG - chr1_4:3254277-3254296 Msa0143990:CDS 35.0%
CATGCCATATCTAGAGAAAT+GGG + chr1_4:3254377-3254396 None:intergenic 35.0%
ACATGCCATATCTAGAGAAA+TGG + chr1_4:3254378-3254397 None:intergenic 35.0%
AGCACAATCAAAGTCACAAG+TGG + chr1_4:3248444-3248463 None:intergenic 40.0%
AAACGTTGATACTGGTGGTT+TGG - chr1_4:3248539-3248558 Msa0143990:CDS 40.0%
TAAGTCTGTCCATATGGAGA+AGG + chr1_4:3248585-3248604 None:intergenic 40.0%
CACTTGAATAGAAAGCAAGC+GGG - chr1_4:3248762-3248781 Msa0143990:intron 40.0%
!!! TGGACCTTTGCCATTTTAGA+TGG - chr1_4:3248801-3248820 Msa0143990:intron 40.0%
TTCTAGTACGTGTATGAGTC+GGG + chr1_4:3248960-3248979 None:intergenic 40.0%
GTTCTAGTACGTGTATGAGT+CGG + chr1_4:3248961-3248980 None:intergenic 40.0%
ATATAGTCCCGTGAGCTATA+TGG + chr1_4:3249026-3249045 None:intergenic 40.0%
! GATTCACACAATTTTGCGAG+AGG + chr1_4:3249095-3249114 None:intergenic 40.0%
GATTACCTCTGGTACTTAAG+AGG - chr1_4:3249602-3249621 Msa0143990:CDS 40.0%
ATGATCCTCTTAAGTACCAG+AGG + chr1_4:3249610-3249629 None:intergenic 40.0%
AACTCAAGTACTTAGAAGGG+TGG - chr1_4:3249868-3249887 Msa0143990:CDS 40.0%
! AGTAAACTTGTTTCCCAGGA+TGG - chr1_4:3249906-3249925 Msa0143990:CDS 40.0%
! GTAAACTTGTTTCCCAGGAT+GGG - chr1_4:3249907-3249926 Msa0143990:CDS 40.0%
!! GTTACATTTTAAAGGGCACG+TGG - chr1_4:3249933-3249952 Msa0143990:CDS 40.0%
GCATGTTCAGAAAATTGGTC+AGG + chr1_4:3250008-3250027 None:intergenic 40.0%
GCAAAAATCGACGATTCCAA+AGG + chr1_4:3250885-3250904 None:intergenic 40.0%
CGCAAATCGCCATATTGTAT+CGG - chr1_4:3250907-3250926 Msa0143990:intron 40.0%
GCAAATCGCCATATTGTATC+GGG - chr1_4:3250908-3250927 Msa0143990:intron 40.0%
TTGTATCGGGTCAAACATAC+GGG - chr1_4:3250921-3250940 Msa0143990:intron 40.0%
AAAGTGCAACTTTCCCATCA+TGG - chr1_4:3251211-3251230 Msa0143990:intron 40.0%
AAGTGCAACTTTCCCATCAT+GGG - chr1_4:3251212-3251231 Msa0143990:intron 40.0%
! CTAAGTGGTGGAGTTTAGTA+TGG + chr1_4:3251254-3251273 None:intergenic 40.0%
AGTTTGGATCTTCTAAGTGG+TGG + chr1_4:3251266-3251285 None:intergenic 40.0%
CTTCAAAGAATACATACCGG+TGG - chr1_4:3251284-3251303 Msa0143990:intron 40.0%
! AGTAAACTTGTTTCCCAGGA+TGG - chr1_4:3249906-3249925 Msa0143990:CDS 40.0%
! GTAAACTTGTTTCCCAGGAT+GGG - chr1_4:3249907-3249926 Msa0143990:CDS 40.0%
!! GTTACATTTTAAAGGGCACG+TGG - chr1_4:3249933-3249952 Msa0143990:CDS 40.0%
GCATGTTCAGAAAATTGGTC+AGG + chr1_4:3250008-3250027 None:intergenic 40.0%
GCAAAAATCGACGATTCCAA+AGG + chr1_4:3250885-3250904 None:intergenic 40.0%
CGCAAATCGCCATATTGTAT+CGG - chr1_4:3250907-3250926 Msa0143990:intron 40.0%
GCAAATCGCCATATTGTATC+GGG - chr1_4:3250908-3250927 Msa0143990:intron 40.0%
TTGTATCGGGTCAAACATAC+GGG - chr1_4:3250921-3250940 Msa0143990:intron 40.0%
AAAGTGCAACTTTCCCATCA+TGG - chr1_4:3251211-3251230 Msa0143990:intron 40.0%
AAGTGCAACTTTCCCATCAT+GGG - chr1_4:3251212-3251231 Msa0143990:intron 40.0%
!! GTTTGTTATCGGTATGTAGG+TGG + chr1_4:3252677-3252696 None:intergenic 40.0%
GTTTACTAGATCTGGTACAG+TGG + chr1_4:3253256-3253275 None:intergenic 40.0%
! TCATTTTGGATACACAGCAC+AGG - chr1_4:3253705-3253724 Msa0143990:intron 40.0%
ACATATGTGATTGCAGCAAG+AGG + chr1_4:3253876-3253895 None:intergenic 40.0%
AGGATTTGAGCTTCCATATG+TGG - chr1_4:3254157-3254176 Msa0143990:intron 40.0%
TCCCATGTGATTCTAGTAGA+TGG + chr1_4:3254281-3254300 None:intergenic 40.0%
TCTACTAGAATCACATGGGA+TGG - chr1_4:3254281-3254300 Msa0143990:CDS 40.0%
TCCTCCCATTTCTCTAGATA+TGG - chr1_4:3254370-3254389 Msa0143990:CDS 40.0%
GCACCAAAGCTAAATATGGC+AGG + chr1_4:3248516-3248535 None:intergenic 45.0%
GGTGCTTCAAACGTTGATAC+TGG - chr1_4:3248531-3248550 Msa0143990:CDS 45.0%
GCTTCAAACGTTGATACTGG+TGG - chr1_4:3248534-3248553 Msa0143990:CDS 45.0%
CTAAAATGGCAAAGGTCCAG+CGG + chr1_4:3248800-3248819 None:intergenic 45.0%
TCTAGTACGTGTATGAGTCG+GGG + chr1_4:3248959-3248978 None:intergenic 45.0%
AATACGTCCCGTGAGCTATA+TGG + chr1_4:3248991-3249010 None:intergenic 45.0%
!! CTTGAGTTGAGAGGTCTACT+TGG + chr1_4:3249856-3249875 None:intergenic 45.0%
GGAAACAAGTTTACTGTCCC+AGG + chr1_4:3249901-3249920 None:intergenic 45.0%
! GGACAGTAAACTTGTTTCCC+AGG - chr1_4:3249902-3249921 Msa0143990:CDS 45.0%
TTATTGTTTGCCTCAACCGG+TGG + chr1_4:3249965-3249984 None:intergenic 45.0%
TTGGTCAGGAAAAAGGCAGA+AGG + chr1_4:3249994-3250013 None:intergenic 45.0%
CCTACTAGTCACTAGTGTGT+AGG + chr1_4:3250049-3250068 None:intergenic 45.0%
CCTACACACTAGTGACTAGT+AGG - chr1_4:3250046-3250065 Msa0143990:intron 45.0%
GCAGTTCGGTAATAAGCTCA+AGG + chr1_4:3250379-3250398 None:intergenic 45.0%
GATCGCGAGACATAAACGAA+AGG + chr1_4:3250857-3250876 None:intergenic 45.0%
! TTTTCGTGGGGTCCACATAT+TGG - chr1_4:3251103-3251122 Msa0143990:intron 45.0%
GATGGCCAGGATTAATTACC+TGG + chr1_4:3251163-3251182 None:intergenic 45.0%
GGTGGAGTTTAGTATGGGAA+TGG + chr1_4:3251248-3251267 None:intergenic 45.0%
GGAAACAAGTTTACTGTCCC+AGG + chr1_4:3249901-3249920 None:intergenic 45.0%
! GGACAGTAAACTTGTTTCCC+AGG - chr1_4:3249902-3249921 Msa0143990:CDS 45.0%
!! TTTTTGTTTGCCTCAACCGG+TGG + chr1_4:3251381-3251400 None:intergenic 45.0%
TTGGTCAGGAAAAAGGCAGA+AGG + chr1_4:3249994-3250013 None:intergenic 45.0%
CCTACTAGTCACTAGTGTGT+AGG + chr1_4:3250049-3250068 None:intergenic 45.0%
CCTACACACTAGTGACTAGT+AGG - chr1_4:3250046-3250065 Msa0143990:intron 45.0%
GCAGTTCGGTAATAAGCTCA+AGG + chr1_4:3250379-3250398 None:intergenic 45.0%
GATCGCGAGACATAAACGAA+AGG + chr1_4:3250857-3250876 None:intergenic 45.0%
! TTTTCGTGGGGTCCACATAT+TGG - chr1_4:3251103-3251122 Msa0143990:intron 45.0%
GATGGCCAGGATTAATTACC+TGG + chr1_4:3251163-3251182 None:intergenic 45.0%
GGTGGAGTTTAGTATGGGAA+TGG + chr1_4:3251248-3251267 None:intergenic 45.0%
CTTGGGTCAAACTTCACACA+TGG - chr1_4:3252849-3252868 Msa0143990:intron 45.0%
!!! AGGAGGTGTTTTTGCAACGT+TGG - chr1_4:3253125-3253144 Msa0143990:intron 45.0%
ATACACAGCACAGGACCAAA+GGG - chr1_4:3253714-3253733 Msa0143990:intron 45.0%
! ATTACAGGAGCACAACCCTT+TGG + chr1_4:3253732-3253751 None:intergenic 45.0%
! GGGTTGTGCTCCTGTAATTT+TGG - chr1_4:3253734-3253753 Msa0143990:intron 45.0%
CGGTGAGTTTGACATCATCA+TGG - chr1_4:3253998-3254017 Msa0143990:intron 45.0%
CTTCCATATGTGGCATGTTG+TGG - chr1_4:3254167-3254186 Msa0143990:CDS 45.0%
TAGCCACAACATGCCACATA+TGG + chr1_4:3254173-3254192 None:intergenic 45.0%
TATGTGGCATGTTGTGGCTA+TGG - chr1_4:3254173-3254192 Msa0143990:CDS 45.0%
! GGAGAGTATAACATTGGTGC+TGG - chr1_4:3254197-3254216 Msa0143990:CDS 45.0%
!! TATAACATTGGTGCTGGCTG+TGG - chr1_4:3254203-3254222 Msa0143990:CDS 45.0%
GTTAGCTGCCTCAGTGTAAT+GGG + chr1_4:3254309-3254328 None:intergenic 45.0%
GCCATATCTAGAGAAATGGG+AGG + chr1_4:3254374-3254393 None:intergenic 45.0%
TGGCGAGAATTGAGCTCTCT+AGG - chr1_4:3248412-3248431 Msa0143990:CDS 50.0%
GTCTGTCCATATGGAGAAGG+TGG + chr1_4:3248582-3248601 None:intergenic 50.0%
TCTCGCGATCAAAACCCCTT+TGG - chr1_4:3252277-3252296 Msa0143990:intron 50.0%
GATACACAGCACAGGACCAA+AGG - chr1_4:3253713-3253732 Msa0143990:intron 50.0%
GGATGGTACCCATTACACTG+AGG - chr1_4:3254298-3254317 Msa0143990:CDS 50.0%
CGTTAGCTGCCTCAGTGTAA+TGG + chr1_4:3254310-3254329 None:intergenic 50.0%
TGGAGAAGGTGGTGCTCGAA+AGG + chr1_4:3248571-3248590 None:intergenic 55.0%
CGAGCACCACCTTCTCCATA+TGG - chr1_4:3248573-3248592 Msa0143990:CDS 55.0%
TAGAAGGGTGGCGTTTAGCC+TGG - chr1_4:3249880-3249899 Msa0143990:CDS 55.0%
AGAAGGGTGGCGTTTAGCCT+GGG - chr1_4:3249881-3249900 Msa0143990:CDS 55.0%
GTCTCGCGATCAAACCCCTT+TGG - chr1_4:3250866-3250885 Msa0143990:intron 55.0%
CAACCCGACTTCAACCCAGA+CGG - chr1_4:3250950-3250969 Msa0143990:intron 55.0%
AACCCGACTTCAACCCAGAC+GGG - chr1_4:3250951-3250970 Msa0143990:intron 55.0%
! TCACCCGTCTGGGTTGAAGT+CGG + chr1_4:3250957-3250976 None:intergenic 55.0%
TGGGTCTTCTTCACCCGTCT+GGG + chr1_4:3250967-3250986 None:intergenic 55.0%
ATGGGTCTTCTTCACCCGTC+TGG + chr1_4:3250968-3250987 None:intergenic 55.0%
AGACGGGTGAAGAAGACCCA+TGG - chr1_4:3250967-3250986 Msa0143990:intron 55.0%
ATACCGGTGGCGTTTAGCCT+GGG - chr1_4:3251297-3251316 Msa0143990:intron 55.0%
CAACCCGACTTCAACCCAGA+CGG - chr1_4:3250950-3250969 Msa0143990:intron 55.0%
AACCCGACTTCAACCCAGAC+GGG - chr1_4:3250951-3250970 Msa0143990:intron 55.0%
! TCACCCGTCTGGGTTGAAGT+CGG + chr1_4:3250957-3250976 None:intergenic 55.0%
TGGGTCTTCTTCACCCGTCT+GGG + chr1_4:3250967-3250986 None:intergenic 55.0%
ATGGGTCTTCTTCACCCGTC+TGG + chr1_4:3250968-3250987 None:intergenic 55.0%
AGACGGGTGAAGAAGACCCA+TGG - chr1_4:3250967-3250986 Msa0143990:intron 55.0%
GGTGCAAACTTCGCAACAGC+AGG - chr1_4:3252870-3252889 Msa0143990:intron 55.0%
GTGGCATGTTGTGGCTATGG+AGG - chr1_4:3254176-3254195 Msa0143990:CDS 55.0%
CGGGCAACAAGTTATGCCGC+TGG - chr1_4:3248781-3248800 Msa0143990:intron 60.0%
! GTGGCAGTTACCACCGGTTG+AGG - chr1_4:3249952-3249971 Msa0143990:CDS 60.0%
! CACCCGTCTGGGTTGAAGTC+GGG + chr1_4:3250956-3250975 None:intergenic 60.0%
CGCGCGTGAAAACACGCCAT+GGG + chr1_4:3250986-3251005 None:intergenic 60.0%
CATACCGGTGGCGTTTAGCC+TGG - chr1_4:3251296-3251315 Msa0143990:intron 60.0%
TGTCCCAGGCTAAACGCCAC+CGG + chr1_4:3249887-3249906 None:intergenic 60.0%
! GTGGCAGTTACCACCGGTTG+AGG - chr1_4:3249952-3249971 Msa0143990:CDS 60.0%
! CACCCGTCTGGGTTGAAGTC+GGG + chr1_4:3250956-3250975 None:intergenic 60.0%
CGCGCGTGAAAACACGCCAT+GGG + chr1_4:3250986-3251005 None:intergenic 60.0%
GGGCACGTGGCAGTTACCAC+CGG - chr1_4:3249946-3249965 Msa0143990:CDS 65.0%
GCGCGCGTGAAAACACGCCA+TGG + chr1_4:3250987-3251006 None:intergenic 65.0%
GGGCACGTGGCAGTTACCAC+CGG - chr1_4:3249946-3249965 Msa0143990:CDS 65.0%
GCGCGCGTGAAAACACGCCA+TGG + chr1_4:3250987-3251006 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 3248411 3254409 3248411 ID=Msa0143990;Name=Msa0143990
chr1_4 mRNA 3248411 3254409 3248411 ID=Msa0143990-mRNA-1;Parent=Msa0143990;Name=Msa0143990-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.75|0.4|1|1|1|5|0|381
chr1_4 exon 3254160 3254409 3254160 ID=Msa0143990-mRNA-1:exon:1407;Parent=Msa0143990-mRNA-1
chr1_4 exon 3249806 3250015 3249806 ID=Msa0143990-mRNA-1:exon:1406;Parent=Msa0143990-mRNA-1
chr1_4 exon 3249524 3249693 3249524 ID=Msa0143990-mRNA-1:exon:1405;Parent=Msa0143990-mRNA-1
chr1_4 exon 3248875 3249139 3248875 ID=Msa0143990-mRNA-1:exon:1404;Parent=Msa0143990-mRNA-1
chr1_4 exon 3248411 3248661 3248411 ID=Msa0143990-mRNA-1:exon:1403;Parent=Msa0143990-mRNA-1
chr1_4 CDS 3254160 3254409 3254160 ID=Msa0143990-mRNA-1:cds;Parent=Msa0143990-mRNA-1
chr1_4 CDS 3249806 3250015 3249806 ID=Msa0143990-mRNA-1:cds;Parent=Msa0143990-mRNA-1
chr1_4 CDS 3249524 3249693 3249524 ID=Msa0143990-mRNA-1:cds;Parent=Msa0143990-mRNA-1
chr1_4 CDS 3248875 3249139 3248875 ID=Msa0143990-mRNA-1:cds;Parent=Msa0143990-mRNA-1
chr1_4 CDS 3248411 3248661 3248411 ID=Msa0143990-mRNA-1:cds;Parent=Msa0143990-mRNA-1
Gene Sequence

>Msa0143990

ATGGCGAGAATTGAGCTCTCTAGGCACATGCCACTTGTGACTTTGATTGTGCTTGTTTTATGTACTACACCCCCAATATTTGCTTCAACACATTGTGATTTTCCTGCCATATTTAGCTTTGGTGCTTCAAACGTTGATACTGGTGGTTTGGCTGCTGCCTTTCGAGCACCACCTTCTCCATATGGACAGACTTATTTTAATAGATCAACTGGAAGATTTTCTGATGGCCGAATCATTATTGATTTCATAGCACAAAGCTTTCGACTTCCCTATCCAAGTCCATATCTTAATTCTCTTGGGTCAAACTTCACACATGGTGCAAACTTCGCAACAGCAGGATCAACAATCAATATCCCTACTAGTATTCTACCTAAAGGAATACTCAGTCCATTTTCTCTTCAAATTCAATACATTCAATTCAAAGATTTCATATCGAAAACAAAACTCATTAGAGATCAAGGAGGTGTTTTTGCAACGTTGGTACCCAAAGAAGATTATTTCTCCAAAGCCTTATACGTATTTGATATCGGTCAAAATGATCTTACTATTGGGTTTTTTGGTAACAAGACTATACAACAAGTCAATGCCACTGTACCAGATCTAGTAAACAATTACATAGAGAATATCAAGAATATATACAATTTAGGGGCAAGATCATTTTGGATACACAGCACAGGACCAAAGGGTTGTGCTCCTGTAATTTTGGCTAATTTTCCATCTGCAATAAAGGATAGTTATGGTTGTGCAAAACAATACAATGAAGTATCTCAATATTTTAATTTAAAGTTGAAGGAAGCTCTAGCTCAACTTCGTAGTGATCTTCCTCTTGCTGCAATCACATATGTAGATATTTACTCTCCTAAGTACTCTCTTTTTACAAACCCGAAAAAATATGGATTTGAGCTTCCATATGTGGCATGTTGTGGCTATGGAGGAGAGTATAACATTGGTGCTGGCTGTGGAGCAACCATAAACATAAATGGTACAAAAACTGTTGCAGGTTCGTGTAAAAATCCATCTACTAGAATCACATGGGATGGTACCCATTACACTGAGGCAGCTAACGAGATTGTCTTTGATCAAATCTCTTTTGGAATTTTCAATGATCCTCCCATTTCTCTAGATATGGCATGTTATAGAAAGTGA
Protein sequence

>Msa0143990

MARIELSRHMPLVTLIVLVLCTTPPIFASTHCDFPAIFSFGASNVDTGGLAAAFRAPPSPYGQTYFNRSTGRFSDGRIIIDFIAQSFRLPYPSPYLNSLGSNFTHGANFATAGSTINIPTSILPKGILSPFSLQIQYIQFKDFISKTKLIRDQGGVFATLVPKEDYFSKALYVFDIGQNDLTIGFFGNKTIQQVNATVPDLVNNYIENIKNIYNLGARSFWIHSTGPKGCAPVILANFPSAIKDSYGCAKQYNEVSQYFNLKLKEALAQLRSDLPLAAITYVDIYSPKYSLFTNPKKYGFELPYVACCGYGGEYNIGAGCGATININGTKTVAGSCKNPSTRITWDGTHYTEAANEIVFDQISFGIFNDPPISLDMACYRK*