AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105200 MtrunA17_Chr1g0160031 89.501 381 40 0 1 381 4 384 0.0 711
Msa0105200 MtrunA17_Chr1g0160011 85.224 379 55 1 1 378 4 382 0.0 667
Msa0105200 MtrunA17_Chr1g0159991 81.723 383 68 1 1 381 1 383 0.0 645
Msa0105200 MtrunA17_Chr1g0159981 78.590 383 76 2 1 381 15 393 0.0 608
Msa0105200 MtrunA17_Chr1g0159971 67.109 377 119 3 9 380 17 393 0.0 529
Msa0105200 MtrunA17_Chr1g0160101 61.600 375 141 2 9 380 15 389 2.67e-165 468
Msa0105200 MtrunA17_Chr8g0381581 53.804 368 165 3 12 374 16 383 1.55e-142 410
Msa0105200 MtrunA17_Chr7g0254461 52.800 375 171 4 12 380 19 393 4.19e-142 409
Msa0105200 MtrunA17_Chr7g0226941 48.045 358 179 4 28 380 25 380 7.23e-114 337
Msa0105200 MtrunA17_Chr6g0450701 42.746 386 202 7 1 378 4 378 2.39e-99 300
Msa0105200 MtrunA17_Chr7g0273101 46.260 361 179 9 25 376 18 372 1.05e-97 295
Msa0105200 MtrunA17_Chr7g0275291 42.175 377 202 8 10 378 7 375 3.35e-94 286
Msa0105200 MtrunA17_Chr1g0191461 42.432 370 199 9 12 373 7 370 2.51e-91 279
Msa0105200 MtrunA17_Chr7g0226931 39.898 391 206 8 12 378 13 398 6.87e-91 279
Msa0105200 MtrunA17_Chr7g0226911 38.903 383 213 8 12 378 7 384 4.86e-89 273
Msa0105200 MtrunA17_Chr8g0352901 41.558 385 196 9 10 378 1 372 7.03e-88 270
Msa0105200 MtrunA17_Chr6g0450711 42.897 359 186 7 29 379 115 462 4.01e-87 271
Msa0105200 MtrunA17_Chr8g0347751 40.997 361 193 6 30 378 30 382 3.56e-85 263
Msa0105200 MtrunA17_Chr6g0450731 40.761 368 193 9 17 379 15 362 5.64e-85 262
Msa0105200 MtrunA17_Chr6g0450721 38.220 382 202 8 10 379 1 360 1.95e-81 253
Msa0105200 MtrunA17_Chr7g0271551 40.922 347 185 8 36 379 36 365 1.17e-79 249
Msa0105200 MtrunA17_Chr8g0339251 39.420 345 176 10 10 343 1 323 2.00e-67 216
Msa0105200 MtrunA17_Chr2g0283481 34.021 388 215 13 1 370 12 376 4.91e-55 186
Msa0105200 MtrunA17_Chr2g0283531 35.393 356 195 12 34 372 29 366 6.59e-50 172
Msa0105200 MtrunA17_Chr2g0283501 33.598 378 211 12 15 374 14 369 1.07e-49 171
Msa0105200 MtrunA17_Chr2g0317271 33.898 354 189 12 34 372 28 351 2.20e-48 167
Msa0105200 MtrunA17_Chr2g0317261 33.898 354 189 12 34 372 28 351 2.99e-48 167
Msa0105200 MtrunA17_Chr3g0104821 34.711 363 189 15 34 372 42 380 5.61e-48 167
Msa0105200 MtrunA17_Chr0c01g0489581 33.333 354 191 12 34 372 28 351 1.33e-47 165
Msa0105200 MtrunA17_Chr0c01g0489571 33.333 354 191 12 34 372 28 351 1.41e-47 165
Msa0105200 MtrunA17_Chr2g0283511 32.626 377 221 10 14 373 9 369 7.54e-46 161
Msa0105200 MtrunA17_Chr2g0301581 33.705 359 191 12 29 372 27 353 3.50e-44 156
Msa0105200 MtrunA17_Chr4g0057991 33.240 358 199 13 34 374 37 371 3.61e-44 157
Msa0105200 MtrunA17_Chr2g0301541 33.426 359 192 12 29 372 27 353 1.38e-42 152
Msa0105200 MtrunA17_Chr3g0112821 34.091 352 190 14 34 370 28 352 3.59e-42 151
Msa0105200 MtrunA17_Chr3g0112691 32.102 352 208 9 34 372 28 361 3.16e-41 149
Msa0105200 MtrunA17_Chr3g0096551 33.062 369 196 14 34 372 27 374 2.22e-40 147
Msa0105200 MtrunA17_Chr3g0093031 33.708 356 191 14 34 370 28 357 4.55e-40 145
Msa0105200 MtrunA17_Chr8g0349341 30.532 357 211 10 15 358 10 342 7.49e-40 145
Msa0105200 MtrunA17_Chr8g0341001 31.880 367 212 12 4 358 2 342 5.59e-39 142
Msa0105200 MtrunA17_Chr4g0027521 32.143 336 194 11 35 358 26 339 5.68e-38 139
Msa0105200 MtrunA17_Chr2g0330781 32.143 336 192 12 35 358 30 341 1.05e-37 139
Msa0105200 MtrunA17_Chr8g0349321 30.793 328 200 7 36 358 37 342 2.98e-37 138
Msa0105200 MtrunA17_Chr5g0432101 29.589 365 208 16 15 358 8 344 2.85e-35 132
Msa0105200 MtrunA17_Chr8g0344941 30.726 358 208 11 13 356 18 349 3.90e-34 130
Msa0105200 MtrunA17_Chr1g0182811 31.536 371 209 14 10 365 11 351 1.60e-33 128
Msa0105200 MtrunA17_Chr2g0301641 31.532 333 193 10 36 356 43 352 3.04e-33 128
Msa0105200 MtrunA17_Chr2g0294311 29.894 378 217 15 12 369 12 361 1.22e-32 125
Msa0105200 MtrunA17_Chr2g0320671 31.437 334 196 11 35 358 29 339 1.83e-32 125
Msa0105200 MtrunA17_Chr7g0274991 30.707 368 208 14 12 365 15 349 2.77e-32 124
Msa0105200 MtrunA17_Chr8g0380041 29.248 359 214 11 12 358 9 339 1.45e-31 122
Msa0105200 MtrunA17_Chr3g0120861 28.743 334 205 12 35 358 37 347 5.06e-31 121
Msa0105200 MtrunA17_Chr5g0438621 29.577 355 208 14 12 355 13 336 5.30e-31 120
Msa0105200 MtrunA17_Chr7g0275011 29.919 371 210 14 13 365 12 350 5.52e-31 121
Msa0105200 MtrunA17_Chr1g0156911 29.111 371 211 14 11 358 4 345 5.60e-31 120
Msa0105200 MtrunA17_Chr5g0396511 30.588 340 199 13 38 365 48 362 6.66e-31 121
Msa0105200 MtrunA17_Chr7g0275001 28.804 368 222 11 12 365 1 342 7.56e-31 120
Msa0105200 MtrunA17_Chr8g0349301 31.757 296 178 9 36 326 37 313 9.46e-31 119
Msa0105200 MtrunA17_Chr5g0438641 28.329 353 214 11 19 358 15 341 2.58e-30 119
Msa0105200 MtrunA17_Chr2g0301591 30.795 302 168 7 14 298 6 283 4.32e-30 117
Msa0105200 MtrunA17_Chr3g0105401 29.586 338 198 13 35 358 27 338 5.51e-30 118
Msa0105200 MtrunA17_Chr5g0438631 27.945 365 212 14 10 358 9 338 8.34e-30 117
Msa0105200 MtrunA17_Chr6g0457921 29.459 370 218 13 12 365 4 346 8.65e-30 117
Msa0105200 MtrunA17_Chr2g0283191 27.957 372 220 14 13 361 15 361 1.39e-29 117
Msa0105200 MtrunA17_Chr3g0131321 28.490 351 211 10 34 371 32 355 5.39e-29 116
Msa0105200 MtrunA17_Chr2g0285061 27.957 372 223 11 1 358 1 341 5.41e-29 115
Msa0105200 MtrunA17_Chr1g0156891 28.533 368 225 12 15 369 21 363 6.17e-29 115
Msa0105200 MtrunA17_Chr1g0156931 29.577 355 214 14 12 354 14 344 6.21e-29 115
Msa0105200 MtrunA17_Chr8g0349331 28.701 331 179 9 33 358 32 310 6.69e-29 114
Msa0105200 MtrunA17_Chr4g0068441 30.460 348 208 11 29 365 28 352 6.86e-29 115
Msa0105200 MtrunA17_Chr1g0156901 27.072 362 220 13 10 356 24 356 8.96e-29 115
Msa0105200 MtrunA17_Chr3g0104831 29.283 321 186 11 70 372 2 299 9.13e-29 114
Msa0105200 MtrunA17_Chr4g0008851 28.571 378 226 15 4 365 1 350 1.14e-28 115
Msa0105200 MtrunA17_Chr5g0405831 29.268 369 204 14 11 354 13 349 1.34e-28 114
Msa0105200 MtrunA17_Chr4g0046151 29.752 363 212 14 15 359 16 353 1.69e-28 114
Msa0105200 MtrunA17_Chr8g0344931 28.989 376 207 11 15 365 5 345 2.05e-28 114
Msa0105200 MtrunA17_Chr5g0405821 29.363 361 215 13 11 354 13 350 4.66e-28 113
Msa0105200 MtrunA17_Chr3g0086641 28.267 375 223 12 1 358 1 346 5.28e-28 113
Msa0105200 MtrunA17_Chr8g0374101 26.801 347 214 11 36 365 37 360 5.38e-28 113
Msa0105200 MtrunA17_Chr1g0156921 27.397 365 216 14 10 356 16 349 9.81e-28 112
Msa0105200 MtrunA17_Chr1g0157001 28.571 308 192 11 60 362 63 347 2.35e-27 111
Msa0105200 MtrunA17_Chr7g0275021 28.226 372 228 12 7 365 5 350 2.85e-27 111
Msa0105200 MtrunA17_Chr2g0294301 28.406 345 213 10 36 369 35 356 3.15e-27 110
Msa0105200 MtrunA17_Chr5g0444401 29.885 348 199 13 35 365 27 346 3.81e-27 110
Msa0105200 MtrunA17_Chr3g0142921 29.641 334 196 14 34 354 34 341 5.35e-27 110
Msa0105200 MtrunA17_Chr3g0142941 29.394 330 197 12 34 352 45 349 7.59e-27 109
Msa0105200 MtrunA17_Chr3g0077571 28.909 339 201 10 28 355 22 331 1.23e-26 108
Msa0105200 MtrunA17_Chr3g0099151 29.345 351 198 13 35 365 86 406 2.86e-26 108
Msa0105200 MtrunA17_Chr1g0189891 29.598 348 191 14 36 365 29 340 3.79e-26 107
Msa0105200 MtrunA17_Chr3g0092131 27.701 361 219 14 15 362 5 336 4.89e-26 107
Msa0105200 MtrunA17_Chr5g0434621 28.754 313 177 12 68 367 62 341 5.19e-26 107
Msa0105200 MtrunA17_Chr2g0283541 33.040 227 136 8 153 372 75 292 1.03e-25 105
Msa0105200 MtrunA17_Chr3g0077581 28.529 333 204 11 35 355 35 345 1.04e-25 106
Msa0105200 MtrunA17_Chr8g0371481 26.957 345 208 13 34 362 39 355 1.23e-25 106
Msa0105200 MtrunA17_Chr3g0099161 28.698 338 198 10 35 356 91 401 1.41e-25 107
Msa0105200 MtrunA17_Chr1g0189931 28.571 350 197 14 36 365 32 348 1.55e-25 106
Msa0105200 MtrunA17_Chr4g0017431 26.632 383 229 12 13 375 8 358 2.98e-25 105
Msa0105200 MtrunA17_Chr2g0301551 29.836 305 168 11 82 372 37 309 3.26e-25 104
Msa0105200 MtrunA17_Chr1g0189901 27.536 345 207 11 36 365 31 347 2.08e-24 103
Msa0105200 MtrunA17_Chr3g0099231 26.590 346 212 10 35 365 27 345 3.13e-24 102
Msa0105200 MtrunA17_Chr5g0420811 29.412 306 182 9 14 308 11 293 3.46e-24 102
Msa0105200 MtrunA17_Chr2g0301571 29.773 309 167 12 82 376 37 309 3.84e-24 101
Msa0105200 MtrunA17_Chr7g0215961 28.065 367 215 14 9 365 9 336 6.02e-24 101
Msa0105200 MtrunA17_Chr8g0371471 26.453 344 210 13 34 362 39 354 2.97e-23 99.8
Msa0105200 MtrunA17_Chr3g0085231 26.807 332 198 8 35 356 30 326 7.28e-23 98.6
Msa0105200 MtrunA17_Chr5g0437421 27.089 347 216 12 35 368 31 353 2.30e-21 94.4
Msa0105200 MtrunA17_Chr4g0027571 30.804 224 133 6 144 359 1 210 2.33e-21 91.7
Msa0105200 MtrunA17_Chr8g0370951 26.649 379 227 14 8 365 4 352 4.56e-21 93.6
Msa0105200 MtrunA17_Chr4g0060811 26.957 345 212 13 31 362 23 340 8.59e-21 92.8
Msa0105200 MtrunA17_Chr1g0178931 25.356 351 209 14 28 363 27 339 1.33e-20 92.0
Msa0105200 MtrunA17_Chr7g0266061 24.706 340 204 12 37 362 43 344 4.32e-19 87.8
Msa0105200 MtrunA17_Chr8g0371491 26.727 333 205 13 35 354 35 341 1.27e-18 86.3
Msa0105200 MtrunA17_Chr2g0284991 24.513 359 221 11 12 355 9 332 2.01e-18 85.9
Msa0105200 MtrunA17_Chr1g0198351 24.765 319 202 11 37 349 44 330 2.14e-18 85.5
Msa0105200 MtrunA17_Chr2g0285001 26.627 338 201 14 35 358 32 336 6.63e-18 84.3
Msa0105200 MtrunA17_Chr7g0229581 33.553 152 89 3 208 359 4 143 2.05e-17 79.0
Msa0105200 MtrunA17_Chr3g0085881 25.982 331 203 11 35 357 32 328 2.34e-17 82.4
Msa0105200 MtrunA17_Chr2g0284951 26.197 355 220 12 12 357 9 330 4.54e-17 82.0
Msa0105200 MtrunA17_Chr8g0370961 27.451 204 131 5 164 365 41 229 1.06e-16 79.0
Msa0105200 MtrunA17_Chr8g0370981 26.329 414 216 15 12 365 19 403 1.17e-16 80.9
Msa0105200 MtrunA17_Chr6g0455661 29.442 197 111 5 165 352 267 444 1.70e-16 80.9
Msa0105200 MtrunA17_Chr6g0459921 27.511 229 132 6 142 352 121 333 2.09e-16 79.7
Msa0105200 MtrunA17_Chr2g0301561 29.741 232 135 8 82 299 37 254 2.54e-16 78.2
Msa0105200 MtrunA17_Chr2g0284921 26.012 346 212 12 35 368 33 346 2.84e-16 79.3
Msa0105200 MtrunA17_Chr3g0104801 40.476 126 64 5 34 148 42 167 7.72e-16 75.1
Msa0105200 MtrunA17_Chr8g0380031 27.273 264 158 9 35 283 83 327 1.61e-15 77.4
Msa0105200 MtrunA17_Chr1g0198391 26.975 367 194 17 37 368 34 361 1.71e-15 77.0
Msa0105200 MtrunA17_Chr1g0198381 24.779 339 212 12 37 366 3 307 4.30e-15 75.5
Msa0105200 MtrunA17_Chr5g0440501 25.498 251 158 8 131 372 6 236 1.45e-13 70.1
Msa0105200 MtrunA17_Chr6g0469521 36.634 101 61 1 211 311 31 128 8.84e-13 65.5
Msa0105200 MtrunA17_Chr7g0273111 39.326 89 51 2 12 98 11 98 1.87e-12 63.2
Msa0105200 MtrunA17_Chr4g0018571 30.380 158 82 6 209 358 28 165 2.72e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105200 AT3G26430.1 49.737 380 186 3 6 380 1 380 4.44e-136 394
Msa0105200 AT1G67830.1 49.296 355 167 4 32 381 26 372 4.20e-124 363
Msa0105200 AT5G14450.1 47.312 372 189 4 15 381 20 389 2.06e-118 349
Msa0105200 AT3G27950.1 46.933 375 178 8 13 378 8 370 1.24e-103 311
Msa0105200 AT1G54790.3 42.781 374 196 9 13 376 10 375 2.61e-92 282
Msa0105200 AT1G54790.1 41.509 371 200 8 16 376 11 374 9.10e-89 273
Msa0105200 AT1G56670.1 40.691 376 200 9 10 380 16 373 3.35e-85 263
Msa0105200 AT4G01130.1 39.426 383 221 6 2 378 3 380 6.97e-85 263
Msa0105200 AT1G09390.1 39.583 384 210 8 1 378 1 368 2.67e-83 258
Msa0105200 AT1G54790.2 38.791 397 200 9 16 376 11 400 1.05e-82 258
Msa0105200 AT3G05180.1 40.625 352 196 6 33 376 33 379 5.35e-82 255
Msa0105200 AT3G62280.1 39.943 348 182 9 35 375 35 362 1.50e-71 228
Msa0105200 AT4G01130.2 41.391 302 163 8 4 299 5 298 1.62e-66 214
Msa0105200 AT1G56670.2 41.781 292 158 6 10 299 16 297 4.71e-65 209
Msa0105200 AT1G28600.1 36.216 370 204 13 26 380 20 372 2.07e-57 192
Msa0105200 AT4G01130.3 37.162 296 178 5 89 378 1 294 5.62e-57 188
Msa0105200 AT1G28640.1 33.077 390 216 11 12 378 8 375 1.43e-53 182
Msa0105200 AT1G28650.1 32.821 390 217 12 12 378 10 377 2.39e-52 179
Msa0105200 AT1G28670.1 35.185 378 207 12 12 370 8 366 3.49e-52 178
Msa0105200 AT3G62280.2 38.909 275 152 6 35 305 35 297 4.17e-52 176
Msa0105200 AT1G28580.1 32.300 387 225 12 10 378 10 377 1.27e-51 177
Msa0105200 AT1G28590.1 32.902 386 229 11 1 371 1 371 1.74e-51 177
Msa0105200 AT1G31550.2 32.995 394 229 10 1 378 1 375 2.29e-51 176
Msa0105200 AT5G45910.1 36.288 361 187 13 34 370 28 369 1.12e-50 174
Msa0105200 AT2G27360.1 33.420 383 215 11 9 371 7 369 1.84e-50 174
Msa0105200 AT1G28610.2 33.933 389 213 15 1 370 1 364 5.05e-50 172
Msa0105200 AT1G28660.2 33.073 384 205 14 12 370 8 364 2.74e-49 171
Msa0105200 AT1G28570.1 31.714 391 223 14 10 378 6 374 1.82e-48 169
Msa0105200 AT1G28660.1 33.247 385 204 15 12 370 8 365 1.92e-48 168
Msa0105200 AT1G31550.1 32.316 393 230 10 1 378 1 372 2.90e-48 168
Msa0105200 AT3G48460.1 28.682 387 220 9 13 373 15 371 3.16e-43 154
Msa0105200 AT3G16370.1 32.635 334 193 11 35 358 29 340 5.13e-38 140
Msa0105200 AT1G28580.2 29.582 311 189 9 79 378 5 296 6.55e-35 130
Msa0105200 AT5G40990.1 30.882 340 206 9 36 365 37 357 1.49e-33 129
Msa0105200 AT1G29670.2 27.322 366 230 11 4 358 67 407 6.96e-33 128
Msa0105200 AT1G06990.1 26.509 381 231 13 12 368 2 357 1.14e-32 126
Msa0105200 AT5G03820.1 29.080 337 202 12 35 358 32 344 1.15e-32 125
Msa0105200 AT1G29670.1 27.198 364 229 11 6 358 1 339 1.58e-32 125
Msa0105200 AT5G03820.2 29.080 337 202 12 35 358 60 372 2.32e-32 125
Msa0105200 AT5G45670.1 29.041 365 219 11 1 355 1 335 3.32e-32 124
Msa0105200 AT5G22810.1 31.454 337 195 12 35 358 33 346 4.68e-32 124
Msa0105200 AT5G03810.1 28.909 339 199 12 35 358 29 340 5.59e-32 124
Msa0105200 AT1G75900.1 28.190 337 204 11 34 358 41 351 1.85e-31 122
Msa0105200 AT4G26790.1 29.825 342 203 12 29 358 22 338 3.23e-31 122
Msa0105200 AT4G26790.2 29.825 342 203 12 29 358 22 338 3.23e-31 122
Msa0105200 AT5G42170.1 30.178 338 202 12 34 362 48 360 3.63e-31 122
Msa0105200 AT1G59406.1 28.371 356 221 11 12 358 6 336 5.50e-31 121
Msa0105200 AT1G59030.1 28.371 356 221 11 12 358 6 336 5.50e-31 121
Msa0105200 AT1G58725.1 28.371 356 221 11 12 358 6 336 5.50e-31 121
Msa0105200 AT5G63170.1 29.609 358 197 13 12 354 4 321 6.24e-31 120
Msa0105200 AT3G14225.1 32.277 347 204 12 36 371 37 363 7.08e-31 121
Msa0105200 AT3G14225.2 31.988 347 201 10 36 371 37 359 7.12e-31 121
Msa0105200 AT3G04290.1 30.997 371 208 14 11 365 7 345 7.45e-31 121
Msa0105200 AT2G04570.1 28.412 359 217 12 12 358 7 337 8.06e-31 120
Msa0105200 AT1G53940.2 31.034 377 217 12 14 370 7 360 8.10e-31 121
Msa0105200 AT2G42990.1 27.671 365 224 14 6 358 1 337 3.04e-30 119
Msa0105200 AT1G20130.1 30.267 337 203 12 35 358 203 520 3.58e-30 121
Msa0105200 AT1G20130.2 30.178 338 204 12 34 358 182 500 4.89e-30 121
Msa0105200 AT1G58430.1 28.818 347 204 12 28 358 27 346 8.94e-30 118
Msa0105200 AT1G20132.1 29.155 343 205 13 35 367 60 374 9.62e-30 118
Msa0105200 AT2G30220.1 28.614 339 203 14 34 358 31 344 1.14e-29 117
Msa0105200 AT4G10950.2 28.035 346 214 11 35 369 70 391 1.16e-29 118
Msa0105200 AT5G08460.1 28.723 376 227 13 15 374 29 379 2.52e-29 117
Msa0105200 AT4G18970.1 27.545 334 209 9 35 358 27 337 4.64e-29 116
Msa0105200 AT4G18970.2 27.545 334 209 9 35 358 27 337 6.88e-29 116
Msa0105200 AT2G31540.1 28.488 344 197 14 28 352 27 340 1.96e-28 114
Msa0105200 AT1G20120.1 29.799 349 209 12 34 369 76 401 1.96e-28 115
Msa0105200 AT1G71120.1 27.874 348 209 10 23 358 18 335 2.47e-28 114
Msa0105200 AT2G23540.1 28.329 353 201 14 36 365 48 371 2.63e-28 114
Msa0105200 AT1G53920.1 27.401 354 225 10 14 357 26 357 2.63e-28 114
Msa0105200 AT2G24560.1 28.698 338 192 14 34 352 32 339 2.80e-28 114
Msa0105200 AT2G30310.1 27.954 347 207 14 28 358 26 345 3.22e-28 114
Msa0105200 AT5G15720.1 29.290 338 200 12 35 358 29 341 4.51e-28 113
Msa0105200 AT3G53100.1 28.363 342 204 13 35 362 28 342 8.62e-28 112
Msa0105200 AT1G53990.1 29.737 380 219 13 10 371 1 350 1.40e-27 112
Msa0105200 AT1G58520.3 29.003 331 198 11 35 358 29 329 1.61e-27 111
Msa0105200 AT1G58525.1 29.003 331 198 11 35 358 29 329 1.61e-27 111
Msa0105200 AT5G45950.1 27.485 342 208 14 27 358 32 343 1.80e-27 111
Msa0105200 AT4G10950.1 27.746 346 211 12 35 369 70 387 2.19e-27 112
Msa0105200 AT1G71250.1 27.174 368 230 12 3 358 9 350 2.27e-27 111
Msa0105200 AT5G45960.1 28.399 331 204 13 36 354 47 356 4.66e-27 110
Msa0105200 AT5G33370.1 29.060 351 194 14 36 365 30 346 6.16e-27 110
Msa0105200 AT4G28780.1 28.070 342 209 10 36 365 31 347 6.31e-27 110
Msa0105200 AT1G73610.1 28.024 339 194 11 36 362 35 335 9.14e-27 109
Msa0105200 AT1G29660.1 27.701 361 225 12 8 358 6 340 3.05e-26 108
Msa0105200 AT1G23500.1 29.855 345 189 14 36 366 35 340 4.10e-26 107
Msa0105200 AT2G19060.1 29.178 353 193 15 35 370 29 341 5.76e-26 107
Msa0105200 AT5G18430.1 27.520 367 217 12 16 365 12 346 9.01e-26 107
Msa0105200 AT3G14820.1 27.119 354 223 10 18 362 14 341 2.27e-25 105
Msa0105200 AT1G28570.3 30.622 209 132 5 175 378 11 211 2.62e-25 102
Msa0105200 AT1G33811.1 27.198 364 226 11 8 355 5 345 4.17e-25 105
Msa0105200 AT1G28570.2 29.004 231 150 6 154 378 80 302 4.78e-25 104
Msa0105200 AT1G54020.2 27.221 349 211 12 16 356 11 324 9.68e-25 104
Msa0105200 AT3G50400.1 27.299 348 202 14 34 358 32 351 1.12e-24 104
Msa0105200 AT1G71691.2 28.049 328 205 9 35 355 54 357 1.42e-24 103
Msa0105200 AT3G43550.1 28.669 293 184 9 16 299 10 286 1.73e-24 102
Msa0105200 AT5G37690.1 29.703 303 169 13 68 358 64 334 1.98e-24 103
Msa0105200 AT2G40250.1 27.027 333 206 13 36 354 36 345 2.09e-24 103
Msa0105200 AT1G75890.2 27.729 339 203 12 35 358 46 357 2.39e-24 103
Msa0105200 AT1G75880.1 27.246 345 205 13 35 362 51 366 2.63e-24 103
Msa0105200 AT1G75890.3 27.729 339 203 12 35 358 75 386 2.68e-24 103
Msa0105200 AT1G75930.1 26.966 356 209 12 28 366 21 342 2.95e-24 102
Msa0105200 AT1G75880.2 27.035 344 206 12 35 362 51 365 3.66e-24 102
Msa0105200 AT5G03610.1 27.327 333 201 12 37 359 44 345 6.50e-24 102
Msa0105200 AT2G24560.2 29.010 293 169 12 28 301 26 298 1.15e-23 100
Msa0105200 AT1G20135.1 26.184 359 216 12 13 359 6 327 2.30e-23 99.8
Msa0105200 AT1G53940.1 32.026 306 173 9 14 299 7 297 2.77e-23 99.4
Msa0105200 AT5G03980.1 25.634 355 200 13 13 358 7 306 7.76e-23 98.2
Msa0105200 AT1G75890.1 26.989 352 202 13 35 358 46 370 1.01e-22 99.0
Msa0105200 AT2G19050.1 27.066 351 201 11 35 370 30 340 1.30e-22 98.2
Msa0105200 AT1G54030.1 28.763 299 169 8 60 355 80 337 2.06e-22 98.2
Msa0105200 AT3G43570.1 25.284 352 200 9 16 358 10 307 2.78e-22 96.7
Msa0105200 AT1G75910.1 26.455 378 219 14 12 368 1 340 1.15e-21 95.1
Msa0105200 AT2G19010.1 26.781 351 202 12 35 370 29 339 1.24e-21 95.1
Msa0105200 AT5G15720.2 29.749 279 167 10 35 299 29 292 1.27e-21 94.7
Msa0105200 AT1G75920.2 27.826 345 204 12 26 358 19 330 1.52e-21 95.1
Msa0105200 AT2G19010.2 26.781 351 202 12 35 370 59 369 2.22e-21 95.1
Msa0105200 AT2G03980.2 28.402 338 197 16 33 355 40 347 6.04e-21 93.6
Msa0105200 AT2G03980.3 28.402 338 197 16 33 355 40 347 6.04e-21 93.6
Msa0105200 AT2G03980.1 28.402 338 197 16 33 355 40 347 6.04e-21 93.6
Msa0105200 AT2G03980.4 28.402 338 197 16 33 355 40 347 6.04e-21 93.6
Msa0105200 AT1G71691.3 28.421 285 181 8 24 299 41 311 8.01e-21 92.4
Msa0105200 AT5G41890.1 27.778 342 204 15 38 358 33 352 9.26e-21 93.2
Msa0105200 AT1G28600.2 37.838 185 96 8 28 202 22 197 1.37e-20 89.7
Msa0105200 AT1G54010.1 25.140 358 220 12 12 357 12 333 3.36e-20 91.7
Msa0105200 AT1G54000.1 23.810 357 226 12 12 357 12 333 4.05e-20 91.3
Msa0105200 AT2G19050.2 29.389 262 154 7 35 286 30 270 5.90e-20 89.4
Msa0105200 AT1G74460.1 27.759 299 178 11 70 358 62 332 6.46e-20 90.5
Msa0105200 AT1G28610.1 37.968 187 93 9 28 202 22 197 7.39e-20 88.6
Msa0105200 AT5G37690.2 28.477 302 166 13 68 358 64 326 3.35e-19 88.2
Msa0105200 AT5G15720.3 26.623 308 185 11 62 358 33 310 7.34e-19 87.0
Msa0105200 AT4G30140.1 27.794 349 195 12 35 370 32 336 2.11e-18 85.9
Msa0105200 AT5G33370.2 28.421 285 159 12 36 299 30 290 3.44e-18 85.1
Msa0105200 AT1G75920.1 26.648 364 195 13 26 356 14 338 4.92e-18 85.1
Msa0105200 AT2G04020.1 30.631 222 135 8 33 246 40 250 6.64e-18 83.2
Msa0105200 AT2G04020.2 31.280 211 127 7 33 236 40 239 1.05e-17 83.6
Msa0105200 AT1G71691.1 25.714 280 180 8 80 355 1 256 1.22e-15 77.0
Msa0105200 AT3G09930.2 24.398 332 213 12 37 359 40 342 2.19e-15 77.0
Msa0105200 AT3G09930.1 24.398 332 213 12 37 359 40 342 2.19e-15 77.0
Msa0105200 AT2G31550.1 24.658 219 138 8 140 352 2 199 4.17e-15 74.3
Msa0105200 AT3G14210.1 25.970 335 198 14 36 356 36 334 1.73e-14 74.7
Msa0105200 AT1G54020.1 24.815 270 167 8 89 356 3 238 5.69e-14 72.0
Msa0105200 AT1G54020.5 24.815 270 167 8 89 356 3 238 5.69e-14 72.0
Msa0105200 AT1G54020.3 24.815 270 167 8 89 356 3 238 5.69e-14 72.0
Msa0105200 AT5G03600.1 24.024 333 208 13 35 359 13 308 2.47e-13 70.9
Msa0105200 AT5G03600.2 24.024 333 208 13 35 359 48 343 2.76e-13 70.9
Msa0105200 AT1G54030.2 28.326 233 129 7 60 286 80 280 8.26e-13 68.9
Msa0105200 AT1G54020.4 25.381 197 131 5 163 356 6 189 1.43e-12 67.4
Msa0105200 AT4G16233.1 31.538 130 79 2 246 374 4 124 6.50e-12 63.2

Find 71 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGAGAAATAATCTTCTT+TGG 0.231376 1_3:-13555566 None:intergenic
GGGTTGTGCTCCTGTAATTT+TGG 0.238479 1_3:+13556148 Msa0105200:CDS
TATTGAATTTGAAGAGAAAA+TGG 0.242470 1_3:-13555356 None:intergenic
ATTTAGGGGCAAGATCATTT+TGG 0.244542 1_3:+13556105 Msa0105200:CDS
CAATGTGTTGAAGCAAATAT+TGG 0.252759 1_3:-13553675 None:intergenic
GGTCAAAATGATCTTACTAT+TGG 0.255111 1_3:+13555610 Msa0105200:CDS
ATCTAGAATATATACAATTT+AGG 0.259047 1_3:+13556089 Msa0105200:intron
CGAATCATTATTGATTTCAT+AGG 0.296923 1_3:+13553831 Msa0105200:CDS
TCTAGAATATATACAATTTA+GGG 0.304611 1_3:+13556090 Msa0105200:intron
GTCAAAATGATCTTACTATT+GGG 0.323581 1_3:+13555611 Msa0105200:CDS
AGTCCATATCTTAATTCTCT+TGG 0.343763 1_3:+13555245 Msa0105200:CDS
GGAGCAACCATAAACGTAAA+TGG 0.346416 1_3:+13556644 Msa0105200:CDS
TTGGAGAAATAATCTTCTTT+GGG 0.348096 1_3:-13555565 None:intergenic
TCCCATGTGATTCTAGTAGA+TGG 0.361854 1_3:-13556698 None:intergenic
ACATGCCATATCTAGAGAAA+TGG 0.371448 1_3:-13556795 None:intergenic
TCCTCCCATTTCTCTAGATA+TGG 0.373294 1_3:+13556790 Msa0105200:CDS
TTTCCTGCCATATTTAGCTT+TGG 0.374076 1_3:+13553702 Msa0105200:CDS
CCTTTAGGTAGAATACTAGT+AGG 0.375719 1_3:-13555323 None:intergenic
TGAAGCACCAAAGCTAAATA+TGG 0.376452 1_3:-13553709 None:intergenic
AATGTGTTGAAGCAAATATT+GGG 0.376489 1_3:-13553674 None:intergenic
ATGTAATTGTTTACTAGATC+TGG 0.381269 1_3:-13555676 None:intergenic
ATCAAATACGTATAATGCTT+TGG 0.391994 1_3:-13555584 None:intergenic
TTAAAATAAGTCTGTCCATA+TGG 0.393287 1_3:-13553780 None:intergenic
GGAAAATTAGCCAAAATTAC+AGG 0.393752 1_3:-13556158 None:intergenic
GCATTATACGTATTTGATAT+CGG 0.410416 1_3:+13555589 Msa0105200:CDS
AATGGACTGAGTATTCCTTT+AGG 0.412825 1_3:-13555338 None:intergenic
GTCCATATCTTAATTCTCTT+GGG 0.414439 1_3:+13555246 Msa0105200:CDS
GGTGCTTCAAACGTTGATAC+TGG 0.415133 1_3:+13553723 Msa0105200:CDS
AAACGTTGATACTGGTGGTT+TGG 0.423737 1_3:+13553731 Msa0105200:CDS
CGAGCACCACCTTCTCCATA+TGG 0.430156 1_3:+13553765 Msa0105200:CDS
ATTAAGATATGGACTTGGAT+AGG 0.438328 1_3:-13555237 None:intergenic
GACCCAAGAGAATTAAGATA+TGG 0.442921 1_3:-13555248 None:intergenic
TAGCCACAACATGCCACATA+TGG 0.448388 1_3:-13556590 None:intergenic
CATGCCATATCTAGAGAAAT+GGG 0.458578 1_3:-13556794 None:intergenic
TAACTATCCTTTATTGCAGA+TGG 0.470249 1_3:-13556179 None:intergenic
CTATGAAATCAATAATGATT+CGG 0.473526 1_3:-13553830 None:intergenic
ACAAAACTCATTAGAGATCA+AGG 0.473797 1_3:+13555407 Msa0105200:CDS
ATTACAGGAGCACAACCCTT+TGG 0.485737 1_3:-13556143 None:intergenic
TGGCGAGAATTGAGCTCTCT+AGG 0.506869 1_3:+13553604 Msa0105200:CDS
TATGTGGCATGTTGTGGCTA+TGG 0.508600 1_3:+13556593 Msa0105200:CDS
AGGATTTGAGCTTCCATATG+TGG 0.510385 1_3:+13556577 Msa0105200:intron
TTAAGATATGGACTTGGATA+GGG 0.511053 1_3:-13555236 None:intergenic
TATAACATTGGTGCTGGCTG+TGG 0.517309 1_3:+13556623 Msa0105200:CDS
CCTACTAGTATTCTACCTAA+AGG 0.522440 1_3:+13555323 Msa0105200:CDS
TCTGCAATAAAGGATAGTTA+TGG 0.538464 1_3:+13556182 Msa0105200:CDS
GGTGCAAACTTCGCAACAGC+AGG 0.544211 1_3:+13555284 Msa0105200:CDS
CTTCCATATGTGGCATGTTG+TGG 0.547714 1_3:+13556587 Msa0105200:CDS
TGGAGAAGGTGGTGCTCGAA+AGG 0.553217 1_3:-13553760 None:intergenic
CTTTAGGTAGAATACTAGTA+GGG 0.559910 1_3:-13555322 None:intergenic
CTTGGGTCAAACTTCACACA+TGG 0.560034 1_3:+13555263 Msa0105200:CDS
GATACACAGCACAGGACCAA+AGG 0.566219 1_3:+13556127 Msa0105200:CDS
GCACCAAAGCTAAATATGGC+AGG 0.569703 1_3:-13553705 None:intergenic
GTCTGTCCATATGGAGAAGG+TGG 0.576766 1_3:-13553771 None:intergenic
GGAGAGTATAACATTGGTGC+TGG 0.583557 1_3:+13556617 Msa0105200:CDS
TAAGTCTGTCCATATGGAGA+AGG 0.590479 1_3:-13553774 None:intergenic
ATACACAGCACAGGACCAAA+GGG 0.590764 1_3:+13556128 Msa0105200:CDS
AGAGAATTAAGATATGGACT+TGG 0.598236 1_3:-13555242 None:intergenic
ATCCATCTACTAGAATCACA+TGG 0.598832 1_3:+13556696 Msa0105200:CDS
ACATATGTGATTGCAGCAAG+AGG 0.602551 1_3:-13556287 None:intergenic
AGCACAATCAAAGTCACAAG+TGG 0.609410 1_3:-13553633 None:intergenic
CAATTACATAGAGAATATCA+AGG 0.612371 1_3:+13555690 Msa0105200:CDS
TATGGAGGAGAGTATAACAT+TGG 0.632782 1_3:+13556611 Msa0105200:CDS
TCTACTAGAATCACATGGGA+TGG 0.636234 1_3:+13556701 Msa0105200:CDS
GCTTCAAACGTTGATACTGG+TGG 0.639155 1_3:+13553726 Msa0105200:CDS
TCCATCTACTAGAATCACAT+GGG 0.644001 1_3:+13556697 Msa0105200:CDS
GTGGCATGTTGTGGCTATGG+AGG 0.654822 1_3:+13556596 Msa0105200:CDS
ATGTGTTGAAGCAAATATTG+GGG 0.677724 1_3:-13553673 None:intergenic
CTAGAATATATACAATTTAG+GGG 0.689000 1_3:+13556091 Msa0105200:intron
GCCATATCTAGAGAAATGGG+AGG 0.708155 1_3:-13556791 None:intergenic
TGTGTTGAAGCAAATATTGG+GGG 0.774403 1_3:-13553672 None:intergenic
GGATGGCACTCATTACACAG+AGG 0.794731 1_3:+13556718 Msa0105200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATCAATAATTAG+TGG + chr1_3:13554073-13554092 Msa0105200:intron 10.0%
!!! ATATTTTAATTTAAAGTTGA+AGG + chr1_3:13556235-13556254 Msa0105200:CDS 10.0%
!!! ATTTATTAATCTTTTAAGGT+AGG - chr1_3:13554109-13554128 None:intergenic 15.0%
!!! CTACATTTATTAATCTTTTA+AGG - chr1_3:13554113-13554132 None:intergenic 15.0%
!! AATCTATTTGTCAAAATTAT+TGG + chr1_3:13554719-13554738 Msa0105200:intron 15.0%
!!! CATTTCAAAATTTTCTTTAT+AGG + chr1_3:13555520-13555539 Msa0105200:intron 15.0%
!! CAGATAAATTTATGAAATAA+GGG - chr1_3:13555726-13555745 None:intergenic 15.0%
!! ATTATATATAAACATAGGAT+AGG - chr1_3:13556016-13556035 None:intergenic 15.0%
!! AGCATATTATATATAAACAT+AGG - chr1_3:13556021-13556040 None:intergenic 15.0%
!!! ATCTAGAATATATACAATTT+AGG + chr1_3:13556089-13556108 Msa0105200:intron 15.0%
!!! TCTAGAATATATACAATTTA+GGG + chr1_3:13556090-13556109 Msa0105200:intron 15.0%
!!! ACTTATTTTAATAGATCAAC+TGG + chr1_3:13553792-13553811 Msa0105200:CDS 20.0%
!! CTATGAAATCAATAATGATT+CGG - chr1_3:13553833-13553852 None:intergenic 20.0%
!! AGATTAATAAATGTAGTGTT+TGG + chr1_3:13554117-13554136 Msa0105200:intron 20.0%
!! TCTATTTAAAAGATCTCATT+AGG + chr1_3:13554981-13555000 Msa0105200:intron 20.0%
!! ACTTGGAGAAAAATATATAA+CGG - chr1_3:13555037-13555056 None:intergenic 20.0%
!! TATTGAATTTGAAGAGAAAA+TGG - chr1_3:13555359-13555378 None:intergenic 20.0%
!! CCAAAAATATCATAAAACAA+TGG - chr1_3:13555451-13555470 None:intergenic 20.0%
!!! CCATTGTTTTATGATATTTT+TGG + chr1_3:13555448-13555467 Msa0105200:intron 20.0%
!!! TTGTTTTATGATATTTTTGG+TGG + chr1_3:13555451-13555470 Msa0105200:intron 20.0%
!!! TTCAAAATTTTCTTTATAGG+AGG + chr1_3:13555523-13555542 Msa0105200:intron 20.0%
!! GCAGATAAATTTATGAAATA+AGG - chr1_3:13555727-13555746 None:intergenic 20.0%
!! ATATCATGAGAATCTATTAT+AGG - chr1_3:13555981-13556000 None:intergenic 20.0%
!! CTAGAATATATACAATTTAG+GGG + chr1_3:13556091-13556110 Msa0105200:intron 20.0%
!!! CACATATAAATACATAGTTT+TGG - chr1_3:13556523-13556542 None:intergenic 20.0%
! AATGTGTTGAAGCAAATATT+GGG - chr1_3:13553677-13553696 None:intergenic 25.0%
! TTAAAATAAGTCTGTCCATA+TGG - chr1_3:13553783-13553802 None:intergenic 25.0%
!!! CGAATCATTATTGATTTCAT+AGG + chr1_3:13553831-13553850 Msa0105200:CDS 25.0%
!! ATTGATTTCATAGGTAATAC+TGG + chr1_3:13553840-13553859 Msa0105200:intron 25.0%
! ATTCTCTATTAGCATATCTA+AGG + chr1_3:13553882-13553901 Msa0105200:intron 25.0%
!!! TATTAATCTTTTAAGGTAGG+TGG - chr1_3:13554106-13554125 None:intergenic 25.0%
!!! ATGTTTTTACGACAAACAAT+CGG - chr1_3:13554312-13554331 None:intergenic 25.0%
! CTACCAAATGTGTATTTAAA+GGG - chr1_3:13554483-13554502 None:intergenic 25.0%
! ACTACCAAATGTGTATTTAA+AGG - chr1_3:13554484-13554503 None:intergenic 25.0%
!!! AGATTGCTTTTATTACAATG+AGG - chr1_3:13554652-13554671 None:intergenic 25.0%
! AATAGAGTTTGGATCTTATA+AGG - chr1_3:13554954-13554973 None:intergenic 25.0%
!!! AGCTATATGTGATTTGTTAT+CGG - chr1_3:13555111-13555130 None:intergenic 25.0%
! GAAATGAAGAAAGAAAAAAG+AGG - chr1_3:13555506-13555525 None:intergenic 25.0%
! TTGGAGAAATAATCTTCTTT+GGG - chr1_3:13555568-13555587 None:intergenic 25.0%
! TTTGGAGAAATAATCTTCTT+TGG - chr1_3:13555569-13555588 None:intergenic 25.0%
! ATCAAATACGTATAATGCTT+TGG - chr1_3:13555587-13555606 None:intergenic 25.0%
! GCATTATACGTATTTGATAT+CGG + chr1_3:13555589-13555608 Msa0105200:CDS 25.0%
! GTCAAAATGATCTTACTATT+GGG + chr1_3:13555611-13555630 Msa0105200:CDS 25.0%
! ATGTAATTGTTTACTAGATC+TGG - chr1_3:13555679-13555698 None:intergenic 25.0%
! CAATTACATAGAGAATATCA+AGG + chr1_3:13555690-13555709 Msa0105200:CDS 25.0%
!!! CACATTAGTTCTTTTTTTAG+AGG + chr1_3:13555758-13555777 Msa0105200:intron 25.0%
! ATATGTTACTAGCAAAAAGA+CGG + chr1_3:13555816-13555835 Msa0105200:intron 25.0%
!!! TAGAAGTTATTTTCAAGTGT+TGG + chr1_3:13555911-13555930 Msa0105200:intron 25.0%
!! TAATTTTCCATCTGCAATAA+AGG + chr1_3:13556172-13556191 Msa0105200:CDS 25.0%
!!! TTTGTAAAAAGAGAGTACTT+AGG - chr1_3:13556326-13556345 None:intergenic 25.0%
! TTTACAAACCCGAAAAAATA+TGG + chr1_3:13556338-13556357 Msa0105200:CDS 25.0%
!!! TTTGACTCACCATATTTTTT+CGG - chr1_3:13556350-13556369 None:intergenic 25.0%
!!! TTAGTGTTTGTTTTGATTGA+CGG + chr1_3:13556392-13556411 Msa0105200:intron 25.0%
! TGAAAGCTTCATTAATATGT+AGG + chr1_3:13556557-13556576 Msa0105200:intron 25.0%
!! TTTTGTACCATTTACGTTTA+TGG - chr1_3:13556654-13556673 None:intergenic 25.0%
ATGTGTTGAAGCAAATATTG+GGG - chr1_3:13553676-13553695 None:intergenic 30.0%
CAATGTGTTGAAGCAAATAT+TGG - chr1_3:13553678-13553697 None:intergenic 30.0%
GAATGAGATAAGAGAAGAAA+TGG - chr1_3:13553866-13553885 None:intergenic 30.0%
! TTTACCATCTAAAATGGCAA+AGG - chr1_3:13554000-13554019 None:intergenic 30.0%
!! TGTGGTTTTACCATCTAAAA+TGG - chr1_3:13554006-13554025 None:intergenic 30.0%
! TTTTAGATGGTAAAACCACA+AGG + chr1_3:13554006-13554025 Msa0105200:intron 30.0%
ATTGTTAAGTTAACACCTTG+TGG - chr1_3:13554024-13554043 None:intergenic 30.0%
CAAATTATCCATATAGCTCA+CGG + chr1_3:13554172-13554191 Msa0105200:intron 30.0%
AAATTATCCATATAGCTCAC+GGG + chr1_3:13554173-13554192 Msa0105200:intron 30.0%
!! TGTTTTTACGACAAACAATC+GGG - chr1_3:13554311-13554330 None:intergenic 30.0%
AGACCCTTTAAATACACATT+TGG + chr1_3:13554477-13554496 Msa0105200:intron 30.0%
! CACATTTGGTAGTTATCTAT+TGG + chr1_3:13554491-13554510 Msa0105200:intron 30.0%
AGAGAGAGAGTTTAAATACT+TGG - chr1_3:13554559-13554578 None:intergenic 30.0%
TATTTAAACTCTCTCTCTCT+AGG + chr1_3:13554561-13554580 Msa0105200:intron 30.0%
ACTGCAATAGTAACAATATC+AGG + chr1_3:13554673-13554692 Msa0105200:intron 30.0%
ACTATCTAATTGATTACCTC+TGG + chr1_3:13554785-13554804 Msa0105200:intron 30.0%
GGTCTATTTGATCATGTAAT+TGG - chr1_3:13554923-13554942 None:intergenic 30.0%
! GTATGTATTCTTTGGAAGTT+TGG - chr1_3:13555089-13555108 None:intergenic 30.0%
TGTTATCGGTATGTATTCTT+TGG - chr1_3:13555097-13555116 None:intergenic 30.0%
TATAGCTTATTGTAGCTCAT+AGG + chr1_3:13555124-13555143 Msa0105200:intron 30.0%
ATAGCTTATTGTAGCTCATA+GGG + chr1_3:13555125-13555144 Msa0105200:intron 30.0%
TTAAGATATGGACTTGGATA+GGG - chr1_3:13555239-13555258 None:intergenic 30.0%
ATTAAGATATGGACTTGGAT+AGG - chr1_3:13555240-13555259 None:intergenic 30.0%
AGAGAATTAAGATATGGACT+TGG - chr1_3:13555245-13555264 None:intergenic 30.0%
AGTCCATATCTTAATTCTCT+TGG + chr1_3:13555245-13555264 Msa0105200:CDS 30.0%
GTCCATATCTTAATTCTCTT+GGG + chr1_3:13555246-13555265 Msa0105200:CDS 30.0%
CTTTAGGTAGAATACTAGTA+GGG - chr1_3:13555325-13555344 None:intergenic 30.0%
ACAAAACTCATTAGAGATCA+AGG + chr1_3:13555407-13555426 Msa0105200:CDS 30.0%
!! GGTGGTTCTAAGTTTAAATA+AGG + chr1_3:13555469-13555488 Msa0105200:intron 30.0%
GGTCAAAATGATCTTACTAT+TGG + chr1_3:13555610-13555629 Msa0105200:CDS 30.0%
!!! GATCTTACTATTGGGTTTTT+TGG + chr1_3:13555619-13555638 Msa0105200:CDS 30.0%
! TTCCGCTCTTTTTATTGTAT+AGG + chr1_3:13555857-13555876 Msa0105200:intron 30.0%
! TCCGCTCTTTTTATTGTATA+GGG + chr1_3:13555858-13555877 Msa0105200:intron 30.0%
ACCCTATACAATAAAAAGAG+CGG - chr1_3:13555862-13555881 None:intergenic 30.0%
ACTAATGAAATGAAACTTGC+TGG + chr1_3:13556064-13556083 Msa0105200:intron 30.0%
GGAAAATTAGCCAAAATTAC+AGG - chr1_3:13556161-13556180 None:intergenic 30.0%
TAACTATCCTTTATTGCAGA+TGG - chr1_3:13556182-13556201 None:intergenic 30.0%
TCTGCAATAAAGGATAGTTA+TGG + chr1_3:13556182-13556201 Msa0105200:CDS 30.0%
!!! TTGACTCACCATATTTTTTC+GGG - chr1_3:13556349-13556368 None:intergenic 30.0%
!!! AATACATAGTTTTGGACTTG+CGG - chr1_3:13556515-13556534 None:intergenic 30.0%
AATGGTACAAAAATTGTTGC+AGG + chr1_3:13556662-13556681 Msa0105200:CDS 30.0%
! GTCTTTTATCAAATCTCTAC+TGG + chr1_3:13556755-13556774 Msa0105200:CDS 30.0%
TGTGTTGAAGCAAATATTGG+GGG - chr1_3:13553675-13553694 None:intergenic 35.0%
! TTTCCTGCCATATTTAGCTT+TGG + chr1_3:13553702-13553721 Msa0105200:CDS 35.0%
! TGAAGCACCAAAGCTAAATA+TGG - chr1_3:13553712-13553731 None:intergenic 35.0%
! TCAACTGGAAGATTTTCTGA+TGG + chr1_3:13553807-13553826 Msa0105200:CDS 35.0%
ACACTTGAATAGAAAGCAAG+CGG + chr1_3:13553953-13553972 Msa0105200:intron 35.0%
CAAATTGTCCATATAGCTCA+CGG + chr1_3:13554207-13554226 Msa0105200:intron 35.0%
AAATTGTCCATATAGCTCAC+GGG + chr1_3:13554208-13554227 Msa0105200:intron 35.0%
! ATTCACACAATTTTGCGAGA+GGG - chr1_3:13554286-13554305 None:intergenic 35.0%
TGGTACTTAAGAGGATCATT+TGG + chr1_3:13554805-13554824 Msa0105200:intron 35.0%
AGATCCAAACTCTATTTGAG+AGG + chr1_3:13554958-13554977 Msa0105200:intron 35.0%
TAGACCTCTCAAATAGAGTT+TGG - chr1_3:13554965-13554984 None:intergenic 35.0%
!! TTCTAAGTACTTGAGTTGAG+AGG - chr1_3:13555063-13555082 None:intergenic 35.0%
GACCCAAGAGAATTAAGATA+TGG - chr1_3:13555251-13555270 None:intergenic 35.0%
CCTTTAGGTAGAATACTAGT+AGG - chr1_3:13555326-13555345 None:intergenic 35.0%
CCTACTAGTATTCTACCTAA+AGG + chr1_3:13555323-13555342 Msa0105200:CDS 35.0%
!! AATGGACTGAGTATTCCTTT+AGG - chr1_3:13555341-13555360 None:intergenic 35.0%
!!! CAATGTCTTGTTTTCATGAG+TGG - chr1_3:13555948-13555967 None:intergenic 35.0%
! ATTTAGGGGCAAGATCATTT+TGG + chr1_3:13556105-13556124 Msa0105200:CDS 35.0%
! TATGGAGGAGAGTATAACAT+TGG + chr1_3:13556611-13556630 Msa0105200:CDS 35.0%
ATCCATCTACTAGAATCACA+TGG + chr1_3:13556696-13556715 Msa0105200:CDS 35.0%
TCCATCTACTAGAATCACAT+GGG + chr1_3:13556697-13556716 Msa0105200:CDS 35.0%
CATGCCATATCTAGAGAAAT+GGG - chr1_3:13556797-13556816 None:intergenic 35.0%
ACATGCCATATCTAGAGAAA+TGG - chr1_3:13556798-13556817 None:intergenic 35.0%
AGCACAATCAAAGTCACAAG+TGG - chr1_3:13553636-13553655 None:intergenic 40.0%
AAACGTTGATACTGGTGGTT+TGG + chr1_3:13553731-13553750 Msa0105200:CDS 40.0%
TAAGTCTGTCCATATGGAGA+AGG - chr1_3:13553777-13553796 None:intergenic 40.0%
CACTTGAATAGAAAGCAAGC+GGG + chr1_3:13553954-13553973 Msa0105200:intron 40.0%
!!! TGGACCTTTGCCATTTTAGA+TGG + chr1_3:13553993-13554012 Msa0105200:intron 40.0%
TTCTAGTACGTGTATGAGTC+GGG - chr1_3:13554152-13554171 None:intergenic 40.0%
GTTCTAGTACGTGTATGAGT+CGG - chr1_3:13554153-13554172 None:intergenic 40.0%
ATATAGTCCCGTGAGCTATA+TGG - chr1_3:13554218-13554237 None:intergenic 40.0%
! GATTCACACAATTTTGCGAG+AGG - chr1_3:13554287-13554306 None:intergenic 40.0%
GATTACCTCTGGTACTTAAG+AGG + chr1_3:13554796-13554815 Msa0105200:intron 40.0%
ATGATCCTCTTAAGTACCAG+AGG - chr1_3:13554804-13554823 None:intergenic 40.0%
GGATCTTATAAGGACTCAAG+AGG - chr1_3:13554944-13554963 None:intergenic 40.0%
! TCATTTTGGATACACAGCAC+AGG + chr1_3:13556119-13556138 Msa0105200:CDS 40.0%
ACATATGTGATTGCAGCAAG+AGG - chr1_3:13556290-13556309 None:intergenic 40.0%
AGGATTTGAGCTTCCATATG+TGG + chr1_3:13556577-13556596 Msa0105200:intron 40.0%
GGAGCAACCATAAACGTAAA+TGG + chr1_3:13556644-13556663 Msa0105200:CDS 40.0%
TCCCATGTGATTCTAGTAGA+TGG - chr1_3:13556701-13556720 None:intergenic 40.0%
TCTACTAGAATCACATGGGA+TGG + chr1_3:13556701-13556720 Msa0105200:CDS 40.0%
TCCTCCCATTTCTCTAGATA+TGG + chr1_3:13556790-13556809 Msa0105200:CDS 40.0%
GCACCAAAGCTAAATATGGC+AGG - chr1_3:13553708-13553727 None:intergenic 45.0%
GGTGCTTCAAACGTTGATAC+TGG + chr1_3:13553723-13553742 Msa0105200:CDS 45.0%
GCTTCAAACGTTGATACTGG+TGG + chr1_3:13553726-13553745 Msa0105200:CDS 45.0%
CTAAAATGGCAAAGGTCCAG+CGG - chr1_3:13553992-13554011 None:intergenic 45.0%
TCTAGTACGTGTATGAGTCG+GGG - chr1_3:13554151-13554170 None:intergenic 45.0%
AATACGTCCCGTGAGCTATA+TGG - chr1_3:13554183-13554202 None:intergenic 45.0%
!! CTTGAGTTGAGAGGTCTACT+TGG - chr1_3:13555054-13555073 None:intergenic 45.0%
CTTGGGTCAAACTTCACACA+TGG + chr1_3:13555263-13555282 Msa0105200:CDS 45.0%
!!! AGGAGGTGTTTTTGCAACGT+TGG + chr1_3:13555540-13555559 Msa0105200:intron 45.0%
ATACACAGCACAGGACCAAA+GGG + chr1_3:13556128-13556147 Msa0105200:CDS 45.0%
! ATTACAGGAGCACAACCCTT+TGG - chr1_3:13556146-13556165 None:intergenic 45.0%
! GGGTTGTGCTCCTGTAATTT+TGG + chr1_3:13556148-13556167 Msa0105200:CDS 45.0%
CGGTGAGTTTGACATCATCA+TGG + chr1_3:13556412-13556431 Msa0105200:intron 45.0%
CTTCCATATGTGGCATGTTG+TGG + chr1_3:13556587-13556606 Msa0105200:CDS 45.0%
TAGCCACAACATGCCACATA+TGG - chr1_3:13556593-13556612 None:intergenic 45.0%
TATGTGGCATGTTGTGGCTA+TGG + chr1_3:13556593-13556612 Msa0105200:CDS 45.0%
! GGAGAGTATAACATTGGTGC+TGG + chr1_3:13556617-13556636 Msa0105200:CDS 45.0%
!! TATAACATTGGTGCTGGCTG+TGG + chr1_3:13556623-13556642 Msa0105200:CDS 45.0%
GCCATATCTAGAGAAATGGG+AGG - chr1_3:13556794-13556813 None:intergenic 45.0%
TGGCGAGAATTGAGCTCTCT+AGG + chr1_3:13553604-13553623 Msa0105200:CDS 50.0%
GTCTGTCCATATGGAGAAGG+TGG - chr1_3:13553774-13553793 None:intergenic 50.0%
GATACACAGCACAGGACCAA+AGG + chr1_3:13556127-13556146 Msa0105200:CDS 50.0%
GGATGGCACTCATTACACAG+AGG + chr1_3:13556718-13556737 Msa0105200:CDS 50.0%
TGGAGAAGGTGGTGCTCGAA+AGG - chr1_3:13553763-13553782 None:intergenic 55.0%
CGAGCACCACCTTCTCCATA+TGG + chr1_3:13553765-13553784 Msa0105200:CDS 55.0%
GGTGCAAACTTCGCAACAGC+AGG + chr1_3:13555284-13555303 Msa0105200:CDS 55.0%
GTGGCATGTTGTGGCTATGG+AGG + chr1_3:13556596-13556615 Msa0105200:CDS 55.0%
CGGGCAACAAGTTATGCCGC+TGG + chr1_3:13553973-13553992 Msa0105200:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13553603 13556829 13553603 ID=Msa0105200;Name=Msa0105200
chr1_3 mRNA 13553603 13556829 13553603 ID=Msa0105200-mRNA-1;Parent=Msa0105200;Name=Msa0105200-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.75|0.4|1|1|1|5|0|381
chr1_3 exon 13553603 13553852 13553603 ID=Msa0105200-mRNA-1:exon:5331;Parent=Msa0105200-mRNA-1
chr1_3 exon 13555219 13555428 13555219 ID=Msa0105200-mRNA-1:exon:5332;Parent=Msa0105200-mRNA-1
chr1_3 exon 13555542 13555711 13555542 ID=Msa0105200-mRNA-1:exon:5333;Parent=Msa0105200-mRNA-1
chr1_3 exon 13556095 13556359 13556095 ID=Msa0105200-mRNA-1:exon:5334;Parent=Msa0105200-mRNA-1
chr1_3 exon 13556579 13556829 13556579 ID=Msa0105200-mRNA-1:exon:5335;Parent=Msa0105200-mRNA-1
chr1_3 CDS 13553603 13553852 13553603 ID=Msa0105200-mRNA-1:cds;Parent=Msa0105200-mRNA-1
chr1_3 CDS 13555219 13555428 13555219 ID=Msa0105200-mRNA-1:cds;Parent=Msa0105200-mRNA-1
chr1_3 CDS 13555542 13555711 13555542 ID=Msa0105200-mRNA-1:cds;Parent=Msa0105200-mRNA-1
chr1_3 CDS 13556095 13556359 13556095 ID=Msa0105200-mRNA-1:cds;Parent=Msa0105200-mRNA-1
chr1_3 CDS 13556579 13556829 13556579 ID=Msa0105200-mRNA-1:cds;Parent=Msa0105200-mRNA-1
Gene Sequence

>Msa0105200

ATGGCGAGAATTGAGCTCTCTAGGCACATGCCACTTGTGACTTTGATTGTGCTTGTTTTATGTACTACACCCCCAATATTTGCTTCAACACATTGTGATTTTCCTGCCATATTTAGCTTTGGTGCTTCAAACGTTGATACTGGTGGTTTGGCTGCTGCCTTTCGAGCACCACCTTCTCCATATGGACAGACTTATTTTAATAGATCAACTGGAAGATTTTCTGATGGCCGAATCATTATTGATTTCATAGCACAAAGCTTTCGACTTCCCTATCCAAGTCCATATCTTAATTCTCTTGGGTCAAACTTCACACATGGTGCAAACTTCGCAACAGCAGGATCAACAATCAATATCCCTACTAGTATTCTACCTAAAGGAATACTCAGTCCATTTTCTCTTCAAATTCAATACATTCAATTCAAAGATTTCATATCGAAAACAAAACTCATTAGAGATCAAGGAGGTGTTTTTGCAACGTTGGTACCCAAAGAAGATTATTTCTCCAAAGCATTATACGTATTTGATATCGGTCAAAATGATCTTACTATTGGGTTTTTTGGTAACAAGACTATACAACAAGTCAATGCTACTGTACCAGATCTAGTAAACAATTACATAGAGAATATCAAGAATATATACAATTTAGGGGCAAGATCATTTTGGATACACAGCACAGGACCAAAGGGTTGTGCTCCTGTAATTTTGGCTAATTTTCCATCTGCAATAAAGGATAGTTATGGTTGTGCAAAACAATACAATGAAGTATCTCAATATTTTAATTTAAAGTTGAAGGAAGCTCTAGCTCAACTTCGTAGTGATCTTCCTCTTGCTGCAATCACATATGTAGATATTTACTCTCCTAAGTACTCTCTTTTTACAAACCCGAAAAAATATGGATTTGAGCTTCCATATGTGGCATGTTGTGGCTATGGAGGAGAGTATAACATTGGTGCTGGCTGTGGAGCAACCATAAACGTAAATGGTACAAAAATTGTTGCAGGTTCGTGTAAAAATCCATCTACTAGAATCACATGGGATGGCACTCATTACACAGAGGAAGCTAACAAGTTTGTCTTTTATCAAATCTCTACTGGAGTTTTCAATGATCCTCCCATTTCTCTAGATATGGCATGTTATAGAAAGTGA
Protein sequence

>Msa0105200

MARIELSRHMPLVTLIVLVLCTTPPIFASTHCDFPAIFSFGASNVDTGGLAAAFRAPPSPYGQTYFNRSTGRFSDGRIIIDFIAQSFRLPYPSPYLNSLGSNFTHGANFATAGSTINIPTSILPKGILSPFSLQIQYIQFKDFISKTKLIRDQGGVFATLVPKEDYFSKALYVFDIGQNDLTIGFFGNKTIQQVNATVPDLVNNYIENIKNIYNLGARSFWIHSTGPKGCAPVILANFPSAIKDSYGCAKQYNEVSQYFNLKLKEALAQLRSDLPLAAITYVDIYSPKYSLFTNPKKYGFELPYVACCGYGGEYNIGAGCGATINVNGTKIVAGSCKNPSTRITWDGTHYTEEANKFVFYQISTGVFNDPPISLDMACYRK*