Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144390 | XP_039683773.1 | 86.538 | 208 | 21 | 2 | 246 | 447 | 548 | 754 | 1.18e-114 | 363 |
| Msa0144390 | XP_039683773.1 | 90.533 | 169 | 5 | 1 | 1 | 158 | 1 | 169 | 3.14e-95 | 313 |
| Msa0144390 | XP_039683773.1 | 91.667 | 120 | 4 | 1 | 158 | 271 | 385 | 504 | 9.90e-63 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144390 | sp|Q9SZL8|FRS5_ARATH | 40.984 | 122 | 64 | 2 | 152 | 267 | 422 | 541 | 6.45e-23 | 105 |
| Msa0144390 | sp|Q9SZL8|FRS5_ARATH | 35.758 | 165 | 83 | 5 | 27 | 169 | 59 | 222 | 2.10e-16 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144390 | A0A6A5MW98 | 54.517 | 321 | 98 | 6 | 159 | 438 | 101 | 414 | 7.69e-106 | 329 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0144390 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0144390 | Msa1208310 | 0.809577 | 1.766080e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144390 | MtrunA17_Chr5g0448761 | 42.478 | 113 | 59 | 1 | 161 | 267 | 420 | 532 | 3.87e-23 | 102 |
| Msa0144390 | MtrunA17_Chr5g0448761 | 37.405 | 131 | 69 | 2 | 36 | 153 | 59 | 189 | 2.28e-17 | 84.7 |
| Msa0144390 | MtrunA17_Chr1g0202341 | 38.889 | 126 | 69 | 2 | 152 | 271 | 397 | 520 | 2.00e-21 | 97.4 |
| Msa0144390 | MtrunA17_Chr1g0202341 | 30.303 | 165 | 99 | 5 | 1 | 153 | 17 | 177 | 6.37e-13 | 70.9 |
| Msa0144390 | MtrunA17_Chr5g0448511 | 39.655 | 116 | 64 | 1 | 158 | 267 | 189 | 304 | 1.18e-19 | 91.7 |
| Msa0144390 | MtrunA17_Chr5g0441581 | 35.766 | 137 | 82 | 1 | 137 | 267 | 349 | 485 | 8.00e-19 | 89.4 |
| Msa0144390 | MtrunA17_Chr1g0196541 | 43.820 | 89 | 44 | 1 | 159 | 241 | 343 | 431 | 2.64e-18 | 87.8 |
| Msa0144390 | MtrunA17_Chr1g0207551 | 34.746 | 118 | 71 | 1 | 161 | 272 | 385 | 502 | 4.11e-18 | 87.4 |
| Msa0144390 | MtrunA17_Chr2g0296781 | 43.678 | 87 | 43 | 1 | 161 | 241 | 345 | 431 | 8.52e-17 | 83.2 |
| Msa0144390 | MtrunA17_Chr6g0477261 | 42.529 | 87 | 44 | 1 | 161 | 241 | 234 | 320 | 1.90e-16 | 82.0 |
| Msa0144390 | MtrunA17_Chr2g0291581 | 35.593 | 118 | 70 | 1 | 161 | 272 | 409 | 526 | 2.60e-16 | 81.6 |
| Msa0144390 | MtrunA17_Chr3g0080351 | 35.398 | 113 | 67 | 1 | 161 | 267 | 419 | 531 | 2.75e-16 | 81.6 |
| Msa0144390 | MtrunA17_Chr3g0118611 | 35.246 | 122 | 69 | 3 | 152 | 267 | 291 | 408 | 6.26e-16 | 80.5 |
| Msa0144390 | MtrunA17_Chr5g0440451 | 34.513 | 113 | 66 | 2 | 161 | 267 | 401 | 511 | 2.63e-14 | 75.5 |
| Msa0144390 | MtrunA17_Chr7g0258861 | 31.148 | 122 | 73 | 3 | 33 | 144 | 6 | 126 | 4.16e-13 | 70.1 |
| Msa0144390 | MtrunA17_Chr2g0329031 | 27.586 | 116 | 78 | 1 | 158 | 267 | 355 | 470 | 6.25e-13 | 70.9 |
| Msa0144390 | MtrunA17_Chr1g0198761 | 33.594 | 128 | 75 | 4 | 154 | 271 | 400 | 527 | 1.29e-12 | 70.1 |
| Msa0144390 | MtrunA17_Chr2g0276841 | 31.496 | 127 | 79 | 2 | 158 | 278 | 426 | 550 | 1.65e-12 | 69.7 |
| Msa0144390 | MtrunA17_Chr2g0294841 | 32.773 | 119 | 72 | 2 | 151 | 263 | 399 | 515 | 1.67e-12 | 69.7 |
| Msa0144390 | MtrunA17_Chr2g0291591 | 31.746 | 126 | 76 | 4 | 35 | 153 | 62 | 184 | 3.20e-12 | 68.6 |
| Msa0144390 | MtrunA17_Chr2g0291591 | 27.059 | 170 | 106 | 3 | 158 | 321 | 409 | 566 | 7.09e-12 | 67.4 |
| Msa0144390 | MtrunA17_Chr4g0033611 | 33.333 | 117 | 68 | 4 | 22 | 129 | 61 | 176 | 6.56e-12 | 65.5 |
| Msa0144390 | MtrunA17_Chr8g0363841 | 33.051 | 118 | 68 | 3 | 161 | 269 | 370 | 485 | 6.91e-12 | 67.8 |
| Msa0144390 | MtrunA17_Chr3g0078041 | 37.273 | 110 | 56 | 5 | 36 | 133 | 49 | 157 | 7.30e-12 | 65.1 |
| Msa0144390 | MtrunA17_Chr6g0458391 | 32.450 | 151 | 87 | 6 | 33 | 170 | 221 | 369 | 1.19e-11 | 67.0 |
| Msa0144390 | MtrunA17_Chr2g0287061 | 31.667 | 120 | 73 | 2 | 158 | 271 | 495 | 611 | 5.00e-11 | 65.1 |
| Msa0144390 | MtrunA17_Chr1g0203051 | 30.702 | 114 | 72 | 2 | 161 | 267 | 428 | 541 | 6.52e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144390 | AT4G38180.1 | 40.984 | 122 | 64 | 2 | 152 | 267 | 422 | 541 | 6.56e-24 | 105 |
| Msa0144390 | AT4G38180.1 | 35.758 | 165 | 83 | 5 | 27 | 169 | 59 | 222 | 2.13e-17 | 85.5 |
| Msa0144390 | AT4G15090.1 | 37.288 | 118 | 68 | 1 | 161 | 272 | 405 | 522 | 1.04e-21 | 98.6 |
| Msa0144390 | AT4G15090.5 | 37.288 | 118 | 68 | 1 | 161 | 272 | 405 | 522 | 1.04e-21 | 98.6 |
| Msa0144390 | AT4G15090.3 | 37.288 | 118 | 68 | 1 | 161 | 272 | 405 | 522 | 1.04e-21 | 98.6 |
| Msa0144390 | AT4G15090.2 | 37.288 | 118 | 68 | 1 | 161 | 272 | 405 | 522 | 1.04e-21 | 98.6 |
| Msa0144390 | AT4G15090.4 | 37.288 | 118 | 68 | 1 | 161 | 272 | 405 | 522 | 1.04e-21 | 98.6 |
| Msa0144390 | AT4G38170.1 | 34.483 | 116 | 70 | 1 | 158 | 267 | 191 | 306 | 7.46e-19 | 89.4 |
| Msa0144390 | AT2G27110.2 | 35.669 | 157 | 87 | 5 | 152 | 302 | 369 | 517 | 2.98e-18 | 88.2 |
| Msa0144390 | AT2G27110.1 | 35.669 | 157 | 87 | 5 | 152 | 302 | 369 | 517 | 2.98e-18 | 88.2 |
| Msa0144390 | AT2G27110.3 | 35.669 | 157 | 87 | 5 | 152 | 302 | 224 | 372 | 3.11e-18 | 87.8 |
| Msa0144390 | AT3G22170.2 | 34.746 | 118 | 71 | 1 | 161 | 272 | 414 | 531 | 7.36e-18 | 87.0 |
| Msa0144390 | AT3G22170.1 | 34.746 | 118 | 71 | 1 | 161 | 272 | 414 | 531 | 7.36e-18 | 87.0 |
| Msa0144390 | AT1G76320.1 | 30.263 | 152 | 95 | 3 | 132 | 272 | 308 | 459 | 1.82e-15 | 79.3 |
| Msa0144390 | AT1G76320.4 | 30.263 | 152 | 95 | 3 | 132 | 272 | 308 | 459 | 1.82e-15 | 79.3 |
| Msa0144390 | AT1G76320.2 | 30.263 | 152 | 95 | 3 | 132 | 272 | 308 | 459 | 1.92e-15 | 79.3 |
| Msa0144390 | AT1G76320.3 | 30.263 | 152 | 95 | 3 | 132 | 272 | 308 | 459 | 2.07e-15 | 79.0 |
| Msa0144390 | AT1G52520.1 | 30.070 | 143 | 93 | 2 | 137 | 272 | 401 | 543 | 1.07e-13 | 73.9 |
| Msa0144390 | AT2G32250.2 | 31.405 | 121 | 75 | 2 | 153 | 267 | 343 | 461 | 1.37e-13 | 73.6 |
| Msa0144390 | AT2G32250.4 | 31.405 | 121 | 75 | 2 | 153 | 267 | 343 | 461 | 1.37e-13 | 73.6 |
| Msa0144390 | AT2G32250.6 | 31.405 | 121 | 75 | 2 | 153 | 267 | 343 | 461 | 1.43e-13 | 73.6 |
| Msa0144390 | AT2G32250.1 | 31.405 | 121 | 75 | 2 | 153 | 267 | 343 | 461 | 1.43e-13 | 73.6 |
| Msa0144390 | AT2G32250.3 | 31.405 | 121 | 75 | 2 | 153 | 267 | 343 | 461 | 1.43e-13 | 73.6 |
| Msa0144390 | AT2G32250.5 | 31.405 | 121 | 75 | 2 | 153 | 267 | 343 | 461 | 1.54e-13 | 73.2 |
| Msa0144390 | AT2G32250.8 | 31.405 | 121 | 75 | 2 | 153 | 267 | 302 | 420 | 1.55e-13 | 73.2 |
| Msa0144390 | AT2G32250.7 | 31.405 | 121 | 75 | 2 | 153 | 267 | 302 | 420 | 1.65e-13 | 73.2 |
| Msa0144390 | AT4G19990.6 | 32.231 | 121 | 76 | 1 | 158 | 272 | 350 | 470 | 8.16e-13 | 71.2 |
| Msa0144390 | AT4G19990.2 | 32.231 | 121 | 76 | 1 | 158 | 272 | 350 | 470 | 8.16e-13 | 71.2 |
| Msa0144390 | AT4G19990.1 | 32.231 | 121 | 76 | 1 | 158 | 272 | 293 | 413 | 8.86e-13 | 70.9 |
| Msa0144390 | AT4G19990.5 | 32.231 | 121 | 76 | 1 | 158 | 272 | 350 | 470 | 9.92e-13 | 70.9 |
| Msa0144390 | AT4G19990.7 | 32.231 | 121 | 76 | 1 | 158 | 272 | 364 | 484 | 9.93e-13 | 70.9 |
| Msa0144390 | AT4G19990.3 | 32.231 | 121 | 76 | 1 | 158 | 272 | 350 | 470 | 1.03e-12 | 70.9 |
| Msa0144390 | AT4G19990.4 | 32.231 | 121 | 76 | 1 | 158 | 272 | 350 | 470 | 1.03e-12 | 70.9 |
| Msa0144390 | AT3G06250.2 | 34.454 | 119 | 65 | 3 | 161 | 271 | 502 | 615 | 1.10e-12 | 70.9 |
| Msa0144390 | AT3G06250.1 | 34.454 | 119 | 65 | 3 | 161 | 271 | 502 | 615 | 1.10e-12 | 70.9 |
| Msa0144390 | AT3G06250.3 | 34.454 | 119 | 65 | 3 | 161 | 271 | 502 | 615 | 1.10e-12 | 70.9 |
| Msa0144390 | AT5G18960.2 | 35.294 | 119 | 64 | 3 | 161 | 271 | 526 | 639 | 1.31e-12 | 70.5 |
| Msa0144390 | AT5G18960.1 | 35.294 | 119 | 64 | 3 | 161 | 271 | 526 | 639 | 1.31e-12 | 70.5 |
| Msa0144390 | AT1G10240.2 | 32.331 | 133 | 80 | 3 | 152 | 278 | 400 | 528 | 7.04e-12 | 68.2 |
| Msa0144390 | AT1G10240.2 | 32.353 | 136 | 78 | 4 | 34 | 155 | 45 | 180 | 1.92e-11 | 66.6 |
| Msa0144390 | AT1G10240.1 | 32.331 | 133 | 80 | 3 | 152 | 278 | 400 | 528 | 7.04e-12 | 68.2 |
| Msa0144390 | AT1G10240.1 | 32.353 | 136 | 78 | 4 | 34 | 155 | 45 | 180 | 1.92e-11 | 66.6 |
| Msa0144390 | AT2G43280.1 | 32.061 | 131 | 76 | 5 | 19 | 137 | 4 | 133 | 8.93e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTCCGACAAGCAATTT+TGG | 0.188112 | 1_4:+3854681 | None:intergenic |
| TTTACAATTCATTTGCAAAA+AGG | 0.228560 | 1_4:-3856554 | Msa0144390:CDS |
| TGCATCCTTCTTAATATCTT+TGG | 0.239826 | 1_4:+3854875 | None:intergenic |
| AGCAAAGGTATTAGTTGATT+TGG | 0.254141 | 1_4:-3854840 | Msa0144390:CDS |
| GAGGTACATTAGAAGGAAAT+TGG | 0.278387 | 1_4:-3856350 | Msa0144390:CDS |
| GGAGTTTCTCCTTTGGAATC+TGG | 0.287253 | 1_4:-3854716 | Msa0144390:CDS |
| GGATTTCTAATAGTCAATTC+TGG | 0.312090 | 1_4:+3854650 | None:intergenic |
| CATACAAAGACAGCTCTCTT+TGG | 0.340587 | 1_4:+3856498 | None:intergenic |
| TATATAAAATTAGAGAATCT+TGG | 0.344745 | 1_4:-3855492 | Msa0144390:CDS |
| TTTAATTCCTCACCAACATT+AGG | 0.347135 | 1_4:+3856630 | None:intergenic |
| ATTAAATAGTGAACCTTGTA+AGG | 0.348615 | 1_4:-3856613 | Msa0144390:CDS |
| CAGTGATGGAGTTTCTCCTT+TGG | 0.356600 | 1_4:-3854723 | Msa0144390:CDS |
| TCCAACGCTGCAAAATAAAA+TGG | 0.360936 | 1_4:+3854966 | None:intergenic |
| GTTAAAAGAGGTACATTAGA+AGG | 0.366674 | 1_4:-3856357 | Msa0144390:CDS |
| TAGTTTGATTTGTGTCATCT+TGG | 0.378031 | 1_4:+3856427 | None:intergenic |
| AAACAGCTTCTATTATAAAC+TGG | 0.392497 | 1_4:+3855466 | None:intergenic |
| GTCCGTACTCAATCATTAAT+CGG | 0.426232 | 1_4:+3855542 | None:intergenic |
| AAGTGTTCTACTTCTCGAAC+TGG | 0.426697 | 1_4:-3856399 | Msa0144390:CDS |
| CCACGCAATGCACAAACAAA+AGG | 0.435072 | 1_4:-3854629 | Msa0144390:CDS |
| GCCACACTTGTTGTTAAAAG+AGG | 0.437725 | 1_4:-3856369 | Msa0144390:CDS |
| GACAACAATGAATGGCTTCA+AGG | 0.439948 | 1_4:-3855517 | Msa0144390:CDS |
| AATTCATTATATCTGATTTG+AGG | 0.445916 | 1_4:-3854793 | Msa0144390:CDS |
| CGCTGCAAAATAAAATGGTC+AGG | 0.446582 | 1_4:+3854971 | None:intergenic |
| GGAATTCAAATCTGTGGAAA+AGG | 0.451124 | 1_4:-3856586 | Msa0144390:CDS |
| TGTCATGAGTGTGGTGAATC+TGG | 0.451337 | 1_4:-3854509 | Msa0144390:CDS |
| TTGAATTCCATCCCCTTACA+AGG | 0.484462 | 1_4:+3856600 | None:intergenic |
| TTAGCTGCTGCTCCTAATGT+TGG | 0.490364 | 1_4:-3856642 | Msa0144390:CDS |
| AAAGAGAGGATTATGAAAGT+AGG | 0.500092 | 1_4:-3855306 | Msa0144390:CDS |
| ATTTGATTTCTTCATTGCAA+TGG | 0.501662 | 1_4:+3854754 | None:intergenic |
| CAAAATTGTAGATTCAAAAG+TGG | 0.511466 | 1_4:-3854578 | Msa0144390:CDS |
| GTCTTTGTATGTTGTAATGA+AGG | 0.517879 | 1_4:-3856486 | Msa0144390:intron |
| TGATTTGAGGCGCACTCGTA+TGG | 0.520232 | 1_4:-3854780 | Msa0144390:CDS |
| TAGTGAACCTTGTAAGGGGA+TGG | 0.531310 | 1_4:-3856607 | Msa0144390:CDS |
| CACGCAATGCACAAACAAAA+GGG | 0.538817 | 1_4:-3854628 | Msa0144390:CDS |
| TGTCAACCAAAATTGCTTGT+CGG | 0.544243 | 1_4:-3854687 | Msa0144390:CDS |
| CGGTGTCATAAAAGCATGAA+TGG | 0.550442 | 1_4:-3856261 | Msa0144390:CDS |
| TCAAATTTAGCTATCAGTGA+TGG | 0.553213 | 1_4:-3854737 | Msa0144390:CDS |
| TTAAATAGTGAACCTTGTAA+GGG | 0.571595 | 1_4:-3856612 | Msa0144390:CDS |
| GCACGCCAAAGATATTAAGA+AGG | 0.572798 | 1_4:-3854880 | Msa0144390:CDS |
| ACAACAATGAATGGCTTCAA+GGG | 0.573168 | 1_4:-3855516 | Msa0144390:CDS |
| ACGGACTGGACAACAATGAA+TGG | 0.575271 | 1_4:-3855525 | Msa0144390:CDS |
| TCACAACAGCAGAACTTGCA+AGG | 0.580654 | 1_4:-3854486 | Msa0144390:CDS |
| GTCTACAGGGTCAAAACTTG+AGG | 0.581238 | 1_4:-3855266 | Msa0144390:CDS |
| GGGGATGGAATTCAAATCTG+TGG | 0.582477 | 1_4:-3856592 | Msa0144390:CDS |
| AGCCGATTAATGATTGAGTA+CGG | 0.595364 | 1_4:-3855544 | Msa0144390:CDS |
| ACAAACAAAAGGGAGAAAGA+AGG | 0.601052 | 1_4:-3854618 | Msa0144390:CDS |
| TGCTGCTCCTAATGTTGGTG+AGG | 0.601546 | 1_4:-3856637 | Msa0144390:CDS |
| GCATGCTCAACAAGAAGCAA+AGG | 0.605686 | 1_4:-3854855 | Msa0144390:CDS |
| TTCCACATTTGTTGACTGTG+TGG | 0.606600 | 1_4:+3856683 | None:intergenic |
| ATTAATGATTGAGTACGGAC+TGG | 0.607432 | 1_4:-3855539 | Msa0144390:CDS |
| GTGCATTGGTCAATTATGGA+TGG | 0.620199 | 1_4:-3856723 | None:intergenic |
| AGCCACACAGTCAACAAATG+TGG | 0.622019 | 1_4:-3856685 | Msa0144390:CDS |
| ACAAAAGGGAGAAAGAAGGA+TGG | 0.625355 | 1_4:-3854614 | Msa0144390:CDS |
| TAAATAGTGAACCTTGTAAG+GGG | 0.625905 | 1_4:-3856611 | Msa0144390:CDS |
| CAACCAAAATTGCTTGTCGG+AGG | 0.633822 | 1_4:-3854684 | Msa0144390:CDS |
| GAATGATCATAACCATCCCA+TGG | 0.640152 | 1_4:-3856310 | Msa0144390:CDS |
| CTAAAAGTGTGTCTTATATG+CGG | 0.670716 | 1_4:-3856281 | Msa0144390:CDS |
| AGAAAAGCATGTCATGAGTG+TGG | 0.709074 | 1_4:-3854518 | Msa0144390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTATCAATCAATTTTATT+TGG | - | chr1_4:3855312-3855331 | Msa0144390:CDS | 15.0% |
| !! | TATATAAAATTAGAGAATCT+TGG | - | chr1_4:3855682-3855701 | Msa0144390:intron | 15.0% |
| !!! | CATTATCAATCAATTTTATT+TGG | - | chr1_4:3855312-3855331 | Msa0144390:CDS | 15.0% |
| !! | TATATAAAATTAGAGAATCT+TGG | - | chr1_4:3855682-3855701 | Msa0144390:intron | 15.0% |
| !! | TTTACAATTCATTTGCAAAA+AGG | - | chr1_4:3854620-3854639 | Msa0144390:CDS | 20.0% |
| !! | ATTTGTGTTGAAATTTGAAA+AGG | - | chr1_4:3855818-3855837 | Msa0144390:intron | 20.0% |
| !!! | ATTTATTCGAGAAACATTTT+TGG | - | chr1_4:3855945-3855964 | Msa0144390:intron | 20.0% |
| !!! | ATGTCAATTATATGAGTTTT+TGG | - | chr1_4:3856124-3856143 | Msa0144390:intron | 20.0% |
| !!! | TGTCAATTATATGAGTTTTT+GGG | - | chr1_4:3856125-3856144 | Msa0144390:intron | 20.0% |
| !!! | AATTCATTATATCTGATTTG+AGG | - | chr1_4:3856381-3856400 | Msa0144390:CDS | 20.0% |
| !! | TTTACAATTCATTTGCAAAA+AGG | - | chr1_4:3854620-3854639 | Msa0144390:CDS | 20.0% |
| !! | ATTTGTGTTGAAATTTGAAA+AGG | - | chr1_4:3855818-3855837 | Msa0144390:intron | 20.0% |
| !!! | ATTTATTCGAGAAACATTTT+TGG | - | chr1_4:3855945-3855964 | Msa0144390:intron | 20.0% |
| !!! | ATGTCAATTATATGAGTTTT+TGG | - | chr1_4:3856124-3856143 | Msa0144390:intron | 20.0% |
| !!! | TGTCAATTATATGAGTTTTT+GGG | - | chr1_4:3856125-3856144 | Msa0144390:intron | 20.0% |
| !!! | AATTCATTATATCTGATTTG+AGG | - | chr1_4:3856381-3856400 | Msa0144390:CDS | 20.0% |
| ! | ATTAAATAGTGAACCTTGTA+AGG | - | chr1_4:3854561-3854580 | Msa0144390:CDS | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+GGG | - | chr1_4:3854562-3854581 | Msa0144390:CDS | 25.0% |
| ! | AATTCATTTGCAAAAAGGAT+GGG | - | chr1_4:3854625-3854644 | Msa0144390:CDS | 25.0% |
| !!! | AAGTCTTGTTGAACATTTTA+AGG | - | chr1_4:3854945-3854964 | Msa0144390:CDS | 25.0% |
| !!! | TCGGATGATAAACTTTTTTT+GGG | - | chr1_4:3855173-3855192 | Msa0144390:intron | 25.0% |
| ! | ATATTACATCTCCAAATTGT+TGG | + | chr1_4:3855224-3855243 | None:intergenic | 25.0% |
| !!! | ATACTTGTTAGTCTTATATG+TGG | + | chr1_4:3855256-3855275 | None:intergenic | 25.0% |
| ! | TGATTATTCAATCCAACAAA+CGG | + | chr1_4:3855294-3855313 | None:intergenic | 25.0% |
| !!! | GTTGTTTGAAACTTTTCTTA+AGG | - | chr1_4:3855377-3855396 | Msa0144390:CDS | 25.0% |
| ! | TCTTCAAAACTTTCTATACT+TGG | + | chr1_4:3855603-3855622 | None:intergenic | 25.0% |
| ! | AAACAGCTTCTATTATAAAC+TGG | + | chr1_4:3855711-3855730 | None:intergenic | 25.0% |
| ! | GTAAATTTCAAGATGAGATT+GGG | - | chr1_4:3855967-3855986 | Msa0144390:intron | 25.0% |
| ! | AAAAAGAAGATTAGCAAAGA+TGG | - | chr1_4:3856008-3856027 | Msa0144390:intron | 25.0% |
| !! | GTCAATTATATGAGTTTTTG+GGG | - | chr1_4:3856126-3856145 | Msa0144390:intron | 25.0% |
| !! | ATTTGATTTCTTCATTGCAA+TGG | + | chr1_4:3856423-3856442 | None:intergenic | 25.0% |
| ! | CAAAATTGTAGATTCAAAAG+TGG | - | chr1_4:3856596-3856615 | Msa0144390:CDS | 25.0% |
| ! | ATTAAATAGTGAACCTTGTA+AGG | - | chr1_4:3854561-3854580 | Msa0144390:CDS | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+GGG | - | chr1_4:3854562-3854581 | Msa0144390:CDS | 25.0% |
| ! | AATTCATTTGCAAAAAGGAT+GGG | - | chr1_4:3854625-3854644 | Msa0144390:CDS | 25.0% |
| !!! | AAGTCTTGTTGAACATTTTA+AGG | - | chr1_4:3854945-3854964 | Msa0144390:CDS | 25.0% |
| !!! | TCGGATGATAAACTTTTTTT+GGG | - | chr1_4:3855173-3855192 | Msa0144390:intron | 25.0% |
| ! | ATATTACATCTCCAAATTGT+TGG | + | chr1_4:3855224-3855243 | None:intergenic | 25.0% |
| !!! | ATACTTGTTAGTCTTATATG+TGG | + | chr1_4:3855256-3855275 | None:intergenic | 25.0% |
| ! | TGATTATTCAATCCAACAAA+CGG | + | chr1_4:3855294-3855313 | None:intergenic | 25.0% |
| !!! | GTTGTTTGAAACTTTTCTTA+AGG | - | chr1_4:3855377-3855396 | Msa0144390:CDS | 25.0% |
| ! | TCTTCAAAACTTTCTATACT+TGG | + | chr1_4:3855603-3855622 | None:intergenic | 25.0% |
| ! | AAACAGCTTCTATTATAAAC+TGG | + | chr1_4:3855711-3855730 | None:intergenic | 25.0% |
| ! | GTAAATTTCAAGATGAGATT+GGG | - | chr1_4:3855967-3855986 | Msa0144390:intron | 25.0% |
| ! | AAAAAGAAGATTAGCAAAGA+TGG | - | chr1_4:3856008-3856027 | Msa0144390:intron | 25.0% |
| !! | GTCAATTATATGAGTTTTTG+GGG | - | chr1_4:3856126-3856145 | Msa0144390:intron | 25.0% |
| !! | ATTTGATTTCTTCATTGCAA+TGG | + | chr1_4:3856423-3856442 | None:intergenic | 25.0% |
| ! | CAAAATTGTAGATTCAAAAG+TGG | - | chr1_4:3856596-3856615 | Msa0144390:CDS | 25.0% |
| TTTAATTCCTCACCAACATT+AGG | + | chr1_4:3854547-3854566 | None:intergenic | 30.0% | |
| TAAATAGTGAACCTTGTAAG+GGG | - | chr1_4:3854563-3854582 | Msa0144390:CDS | 30.0% | |
| CAATTCATTTGCAAAAAGGA+TGG | - | chr1_4:3854624-3854643 | Msa0144390:CDS | 30.0% | |
| GTCTTTGTATGTTGTAATGA+AGG | - | chr1_4:3854688-3854707 | Msa0144390:CDS | 30.0% | |
| !! | TAGTTTGATTTGTGTCATCT+TGG | + | chr1_4:3854750-3854769 | None:intergenic | 30.0% |
| ! | GTTAAAAGAGGTACATTAGA+AGG | - | chr1_4:3854817-3854836 | Msa0144390:CDS | 30.0% |
| ! | GCATATAAGACACACTTTTA+GGG | + | chr1_4:3854894-3854913 | None:intergenic | 30.0% |
| ! | CTAAAAGTGTGTCTTATATG+CGG | - | chr1_4:3854893-3854912 | Msa0144390:CDS | 30.0% |
| !! | GTTGAACATTTTAAGGAAGA+AGG | - | chr1_4:3854952-3854971 | Msa0144390:CDS | 30.0% |
| CAATTATTGCAAACAGAAAC+AGG | - | chr1_4:3855104-3855123 | Msa0144390:intron | 30.0% | |
| !!! | CTCGGATGATAAACTTTTTT+TGG | - | chr1_4:3855172-3855191 | Msa0144390:intron | 30.0% |
| !! | AGATTAGCTTACCAACAATT+TGG | - | chr1_4:3855210-3855229 | Msa0144390:intron | 30.0% |
| ATTATTCAATCCAACAAACG+GGG | + | chr1_4:3855292-3855311 | None:intergenic | 30.0% | |
| GATTATTCAATCCAACAAAC+GGG | + | chr1_4:3855293-3855312 | None:intergenic | 30.0% | |
| ! | TGAAACTTTTCTTAAGGCAA+TGG | - | chr1_4:3855383-3855402 | Msa0144390:CDS | 30.0% |
| !!! | TAGAAAGTTTTGAAGAAGAC+TGG | - | chr1_4:3855607-3855626 | Msa0144390:intron | 30.0% |
| !!! | AATAGAAGCTGTTTTTTTGC+TGG | - | chr1_4:3855717-3855736 | Msa0144390:intron | 30.0% |
| !!! | ATAGAAGCTGTTTTTTTGCT+GGG | - | chr1_4:3855718-3855737 | Msa0144390:intron | 30.0% |
| TGTGTTGAAATTTGAAAAGG+TGG | - | chr1_4:3855821-3855840 | Msa0144390:intron | 30.0% | |
| !!! | CTCTTTTTTCTACTTCTAAG+CGG | + | chr1_4:3855854-3855873 | None:intergenic | 30.0% |
| CTTAGAAGTAGAAAAAAGAG+AGG | - | chr1_4:3855854-3855873 | Msa0144390:intron | 30.0% | |
| AAAGAGAGGATTATGAAAGT+AGG | - | chr1_4:3855868-3855887 | Msa0144390:intron | 30.0% | |
| AAAAAACGCATATTGTCTAC+AGG | - | chr1_4:3855894-3855913 | Msa0144390:intron | 30.0% | |
| AAAAACGCATATTGTCTACA+GGG | - | chr1_4:3855895-3855914 | Msa0144390:intron | 30.0% | |
| GGTAAATTTCAAGATGAGAT+TGG | - | chr1_4:3855966-3855985 | Msa0144390:intron | 30.0% | |
| GAAACTTGATAGACATAGTT+AGG | + | chr1_4:3856035-3856054 | None:intergenic | 30.0% | |
| GTTTCTCGTTGATGTAAATT+TGG | - | chr1_4:3856079-3856098 | Msa0144390:intron | 30.0% | |
| !!! | CTCGTAATTTTTCAAGCAAA+AGG | - | chr1_4:3856167-3856186 | Msa0144390:intron | 30.0% |
| TGCATCCTTCTTAATATCTT+TGG | + | chr1_4:3856302-3856321 | None:intergenic | 30.0% | |
| !! | AGCAAAGGTATTAGTTGATT+TGG | - | chr1_4:3856334-3856353 | Msa0144390:CDS | 30.0% |
| TCAAATTTAGCTATCAGTGA+TGG | - | chr1_4:3856437-3856456 | Msa0144390:intron | 30.0% | |
| !!! | AGCAATTTTGGTTGACATTT+TGG | + | chr1_4:3856484-3856503 | None:intergenic | 30.0% |
| GGATTTCTAATAGTCAATTC+TGG | + | chr1_4:3856527-3856546 | None:intergenic | 30.0% | |
| TTTAATTCCTCACCAACATT+AGG | + | chr1_4:3854547-3854566 | None:intergenic | 30.0% | |
| TAAATAGTGAACCTTGTAAG+GGG | - | chr1_4:3854563-3854582 | Msa0144390:CDS | 30.0% | |
| CAATTCATTTGCAAAAAGGA+TGG | - | chr1_4:3854624-3854643 | Msa0144390:CDS | 30.0% | |
| GTCTTTGTATGTTGTAATGA+AGG | - | chr1_4:3854688-3854707 | Msa0144390:CDS | 30.0% | |
| !! | TAGTTTGATTTGTGTCATCT+TGG | + | chr1_4:3854750-3854769 | None:intergenic | 30.0% |
| ! | GTTAAAAGAGGTACATTAGA+AGG | - | chr1_4:3854817-3854836 | Msa0144390:CDS | 30.0% |
| ! | GCATATAAGACACACTTTTA+GGG | + | chr1_4:3854894-3854913 | None:intergenic | 30.0% |
| ! | CTAAAAGTGTGTCTTATATG+CGG | - | chr1_4:3854893-3854912 | Msa0144390:CDS | 30.0% |
| !! | GTTGAACATTTTAAGGAAGA+AGG | - | chr1_4:3854952-3854971 | Msa0144390:CDS | 30.0% |
| CAATTATTGCAAACAGAAAC+AGG | - | chr1_4:3855104-3855123 | Msa0144390:intron | 30.0% | |
| !!! | CTCGGATGATAAACTTTTTT+TGG | - | chr1_4:3855172-3855191 | Msa0144390:intron | 30.0% |
| !! | AGATTAGCTTACCAACAATT+TGG | - | chr1_4:3855210-3855229 | Msa0144390:intron | 30.0% |
| ATTATTCAATCCAACAAACG+GGG | + | chr1_4:3855292-3855311 | None:intergenic | 30.0% | |
| GATTATTCAATCCAACAAAC+GGG | + | chr1_4:3855293-3855312 | None:intergenic | 30.0% | |
| ! | TGAAACTTTTCTTAAGGCAA+TGG | - | chr1_4:3855383-3855402 | Msa0144390:CDS | 30.0% |
| !!! | TAGAAAGTTTTGAAGAAGAC+TGG | - | chr1_4:3855607-3855626 | Msa0144390:intron | 30.0% |
| !!! | AATAGAAGCTGTTTTTTTGC+TGG | - | chr1_4:3855717-3855736 | Msa0144390:intron | 30.0% |
| !!! | ATAGAAGCTGTTTTTTTGCT+GGG | - | chr1_4:3855718-3855737 | Msa0144390:intron | 30.0% |
| TGTGTTGAAATTTGAAAAGG+TGG | - | chr1_4:3855821-3855840 | Msa0144390:intron | 30.0% | |
| !!! | CTCTTTTTTCTACTTCTAAG+CGG | + | chr1_4:3855854-3855873 | None:intergenic | 30.0% |
| CTTAGAAGTAGAAAAAAGAG+AGG | - | chr1_4:3855854-3855873 | Msa0144390:intron | 30.0% | |
| AAAGAGAGGATTATGAAAGT+AGG | - | chr1_4:3855868-3855887 | Msa0144390:intron | 30.0% | |
| AAAAAACGCATATTGTCTAC+AGG | - | chr1_4:3855894-3855913 | Msa0144390:intron | 30.0% | |
| AAAAACGCATATTGTCTACA+GGG | - | chr1_4:3855895-3855914 | Msa0144390:intron | 30.0% | |
| GGTAAATTTCAAGATGAGAT+TGG | - | chr1_4:3855966-3855985 | Msa0144390:intron | 30.0% | |
| GAAACTTGATAGACATAGTT+AGG | + | chr1_4:3856035-3856054 | None:intergenic | 30.0% | |
| GTTTCTCGTTGATGTAAATT+TGG | - | chr1_4:3856079-3856098 | Msa0144390:intron | 30.0% | |
| !!! | CTCGTAATTTTTCAAGCAAA+AGG | - | chr1_4:3856167-3856186 | Msa0144390:intron | 30.0% |
| TGCATCCTTCTTAATATCTT+TGG | + | chr1_4:3856302-3856321 | None:intergenic | 30.0% | |
| !! | AGCAAAGGTATTAGTTGATT+TGG | - | chr1_4:3856334-3856353 | Msa0144390:CDS | 30.0% |
| TCAAATTTAGCTATCAGTGA+TGG | - | chr1_4:3856437-3856456 | Msa0144390:intron | 30.0% | |
| !!! | AGCAATTTTGGTTGACATTT+TGG | + | chr1_4:3856484-3856503 | None:intergenic | 30.0% |
| GGATTTCTAATAGTCAATTC+TGG | + | chr1_4:3856527-3856546 | None:intergenic | 30.0% | |
| GGAATTCAAATCTGTGGAAA+AGG | - | chr1_4:3854588-3854607 | Msa0144390:CDS | 35.0% | |
| !! | TTTGCAAAAAGGATGGGTTT+TGG | - | chr1_4:3854631-3854650 | Msa0144390:CDS | 35.0% |
| ! | ACCTCTTTTAACAACAAGTG+TGG | + | chr1_4:3854809-3854828 | None:intergenic | 35.0% |
| GAGGTACATTAGAAGGAAAT+TGG | - | chr1_4:3854824-3854843 | Msa0144390:CDS | 35.0% | |
| ! | CGCATATAAGACACACTTTT+AGG | + | chr1_4:3854895-3854914 | None:intergenic | 35.0% |
| TTGCTACAATGTTCAGTGAA+GGG | - | chr1_4:3854992-3855011 | Msa0144390:intron | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | - | chr1_4:3855022-3855041 | Msa0144390:intron | 35.0% | |
| CGAAGAAAGAATTTAGACGT+TGG | - | chr1_4:3855063-3855082 | Msa0144390:intron | 35.0% | |
| TCCAATGTGATGAAGATTCT+CGG | - | chr1_4:3855154-3855173 | Msa0144390:intron | 35.0% | |
| AGTCAGAACGCTCATTTATA+TGG | - | chr1_4:3855355-3855374 | Msa0144390:intron | 35.0% | |
| ! | ACTTTTCTTAAGGCAATGGA+TGG | - | chr1_4:3855387-3855406 | Msa0144390:CDS | 35.0% |
| TGGTCAGTTATGACAGATTT+GGG | + | chr1_4:3855420-3855439 | None:intergenic | 35.0% | |
| TTTCAATTCTCGCTTGAAAG+TGG | + | chr1_4:3855562-3855581 | None:intergenic | 35.0% | |
| AGCCGATTAATGATTGAGTA+CGG | - | chr1_4:3855630-3855649 | Msa0144390:intron | 35.0% | |
| GTCCGTACTCAATCATTAAT+CGG | + | chr1_4:3855635-3855654 | None:intergenic | 35.0% | |
| ATTAATGATTGAGTACGGAC+TGG | - | chr1_4:3855635-3855654 | Msa0144390:intron | 35.0% | |
| ACAACAATGAATGGCTTCAA+GGG | - | chr1_4:3855658-3855677 | Msa0144390:intron | 35.0% | |
| GAAACACAGATTGCAAAATG+TGG | - | chr1_4:3856101-3856120 | Msa0144390:intron | 35.0% | |
| !!! | ACCATTTTATTTTGCAGCGT+TGG | - | chr1_4:3856207-3856226 | Msa0144390:intron | 35.0% |
| TCCAACGCTGCAAAATAAAA+TGG | + | chr1_4:3856211-3856230 | None:intergenic | 35.0% | |
| ! | GATACGACGAGTAATTTTGA+AGG | - | chr1_4:3856263-3856282 | Msa0144390:CDS | 35.0% |
| TGTCAACCAAAATTGCTTGT+CGG | - | chr1_4:3856487-3856506 | Msa0144390:CDS | 35.0% | |
| ACAAACAAAAGGGAGAAAGA+AGG | - | chr1_4:3856556-3856575 | Msa0144390:CDS | 35.0% | |
| GGAATTCAAATCTGTGGAAA+AGG | - | chr1_4:3854588-3854607 | Msa0144390:CDS | 35.0% | |
| !! | TTTGCAAAAAGGATGGGTTT+TGG | - | chr1_4:3854631-3854650 | Msa0144390:CDS | 35.0% |
| ! | ACCTCTTTTAACAACAAGTG+TGG | + | chr1_4:3854809-3854828 | None:intergenic | 35.0% |
| GAGGTACATTAGAAGGAAAT+TGG | - | chr1_4:3854824-3854843 | Msa0144390:CDS | 35.0% | |
| ! | CGCATATAAGACACACTTTT+AGG | + | chr1_4:3854895-3854914 | None:intergenic | 35.0% |
| TTGCTACAATGTTCAGTGAA+GGG | - | chr1_4:3854992-3855011 | Msa0144390:intron | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | - | chr1_4:3855022-3855041 | Msa0144390:intron | 35.0% | |
| CGAAGAAAGAATTTAGACGT+TGG | - | chr1_4:3855063-3855082 | Msa0144390:intron | 35.0% | |
| TCCAATGTGATGAAGATTCT+CGG | - | chr1_4:3855154-3855173 | Msa0144390:intron | 35.0% | |
| AGTCAGAACGCTCATTTATA+TGG | - | chr1_4:3855355-3855374 | Msa0144390:intron | 35.0% | |
| ! | ACTTTTCTTAAGGCAATGGA+TGG | - | chr1_4:3855387-3855406 | Msa0144390:CDS | 35.0% |
| TGGTCAGTTATGACAGATTT+GGG | + | chr1_4:3855420-3855439 | None:intergenic | 35.0% | |
| TTTCAATTCTCGCTTGAAAG+TGG | + | chr1_4:3855562-3855581 | None:intergenic | 35.0% | |
| AGCCGATTAATGATTGAGTA+CGG | - | chr1_4:3855630-3855649 | Msa0144390:intron | 35.0% | |
| GTCCGTACTCAATCATTAAT+CGG | + | chr1_4:3855635-3855654 | None:intergenic | 35.0% | |
| ATTAATGATTGAGTACGGAC+TGG | - | chr1_4:3855635-3855654 | Msa0144390:intron | 35.0% | |
| ACAACAATGAATGGCTTCAA+GGG | - | chr1_4:3855658-3855677 | Msa0144390:intron | 35.0% | |
| GAAACACAGATTGCAAAATG+TGG | - | chr1_4:3856101-3856120 | Msa0144390:intron | 35.0% | |
| !!! | ACCATTTTATTTTGCAGCGT+TGG | - | chr1_4:3856207-3856226 | Msa0144390:intron | 35.0% |
| TCCAACGCTGCAAAATAAAA+TGG | + | chr1_4:3856211-3856230 | None:intergenic | 35.0% | |
| ! | GATACGACGAGTAATTTTGA+AGG | - | chr1_4:3856263-3856282 | Msa0144390:CDS | 35.0% |
| TGTCAACCAAAATTGCTTGT+CGG | - | chr1_4:3856487-3856506 | Msa0144390:CDS | 35.0% | |
| ACAAACAAAAGGGAGAAAGA+AGG | - | chr1_4:3856556-3856575 | Msa0144390:CDS | 35.0% | |
| ! | TTCCACATTTGTTGACTGTG+TGG | + | chr1_4:3854494-3854513 | None:intergenic | 40.0% |
| TTGAATTCCATCCCCTTACA+AGG | + | chr1_4:3854577-3854596 | None:intergenic | 40.0% | |
| CATACAAAGACAGCTCTCTT+TGG | + | chr1_4:3854679-3854698 | None:intergenic | 40.0% | |
| AAGTGTTCTACTTCTCGAAC+TGG | - | chr1_4:3854775-3854794 | Msa0144390:CDS | 40.0% | |
| !! | GCCACACTTGTTGTTAAAAG+AGG | - | chr1_4:3854805-3854824 | Msa0144390:CDS | 40.0% |
| GAATGATCATAACCATCCCA+TGG | - | chr1_4:3854864-3854883 | Msa0144390:CDS | 40.0% | |
| !!! | ACACTTTTAGGGCTAACCAT+GGG | + | chr1_4:3854883-3854902 | None:intergenic | 40.0% |
| !! | CGGTGTCATAAAAGCATGAA+TGG | - | chr1_4:3854913-3854932 | Msa0144390:CDS | 40.0% |
| ATTGTAGCAACCTTTCCTGT+CGG | + | chr1_4:3854982-3855001 | None:intergenic | 40.0% | |
| GTTGCTACAATGTTCAGTGA+AGG | - | chr1_4:3854991-3855010 | Msa0144390:intron | 40.0% | |
| TGCTACAATGTTCAGTGAAG+GGG | - | chr1_4:3854993-3855012 | Msa0144390:intron | 40.0% | |
| ! | GGACTTGGCTTTCTCTAATA+GGG | - | chr1_4:3855014-3855033 | Msa0144390:intron | 40.0% |
| TCCGAGAATCTTCATCACAT+TGG | + | chr1_4:3855158-3855177 | None:intergenic | 40.0% | |
| CTGGTCAGTTATGACAGATT+TGG | + | chr1_4:3855421-3855440 | None:intergenic | 40.0% | |
| CAAATCTGTCATAACTGACC+AGG | - | chr1_4:3855419-3855438 | Msa0144390:CDS | 40.0% | |
| TGTCATAACTGACCAGGATT+TGG | - | chr1_4:3855425-3855444 | Msa0144390:CDS | 40.0% | |
| ! | TTGGCTATGAAAGCTGCTTT+AGG | - | chr1_4:3855444-3855463 | Msa0144390:CDS | 40.0% |
| TCCTAATATGCCATAAGCAG+AGG | + | chr1_4:3855497-3855516 | None:intergenic | 40.0% | |
| GACAACAATGAATGGCTTCA+AGG | - | chr1_4:3855657-3855676 | Msa0144390:intron | 40.0% | |
| ! | ATCTTGAGCATTGTAGTTGC+TGG | + | chr1_4:3856057-3856076 | None:intergenic | 40.0% |
| !! | AGTTTTTGGGGATATTGTGC+AGG | - | chr1_4:3856138-3856157 | Msa0144390:intron | 40.0% |
| CGCTGCAAAATAAAATGGTC+AGG | + | chr1_4:3856206-3856225 | None:intergenic | 40.0% | |
| GCACGCCAAAGATATTAAGA+AGG | - | chr1_4:3856294-3856313 | Msa0144390:CDS | 40.0% | |
| !! | ACATTTTGGCCAGATTCCAA+AGG | + | chr1_4:3856470-3856489 | None:intergenic | 40.0% |
| CACGCAATGCACAAACAAAA+GGG | - | chr1_4:3856546-3856565 | Msa0144390:CDS | 40.0% | |
| ACAAAAGGGAGAAAGAAGGA+TGG | - | chr1_4:3856560-3856579 | Msa0144390:CDS | 40.0% | |
| ! | AGAAAAGCATGTCATGAGTG+TGG | - | chr1_4:3856656-3856675 | Msa0144390:CDS | 40.0% |
| ! | TTCCACATTTGTTGACTGTG+TGG | + | chr1_4:3854494-3854513 | None:intergenic | 40.0% |
| TTGAATTCCATCCCCTTACA+AGG | + | chr1_4:3854577-3854596 | None:intergenic | 40.0% | |
| CATACAAAGACAGCTCTCTT+TGG | + | chr1_4:3854679-3854698 | None:intergenic | 40.0% | |
| AAGTGTTCTACTTCTCGAAC+TGG | - | chr1_4:3854775-3854794 | Msa0144390:CDS | 40.0% | |
| !! | GCCACACTTGTTGTTAAAAG+AGG | - | chr1_4:3854805-3854824 | Msa0144390:CDS | 40.0% |
| GAATGATCATAACCATCCCA+TGG | - | chr1_4:3854864-3854883 | Msa0144390:CDS | 40.0% | |
| !!! | ACACTTTTAGGGCTAACCAT+GGG | + | chr1_4:3854883-3854902 | None:intergenic | 40.0% |
| !! | CGGTGTCATAAAAGCATGAA+TGG | - | chr1_4:3854913-3854932 | Msa0144390:CDS | 40.0% |
| ATTGTAGCAACCTTTCCTGT+CGG | + | chr1_4:3854982-3855001 | None:intergenic | 40.0% | |
| GTTGCTACAATGTTCAGTGA+AGG | - | chr1_4:3854991-3855010 | Msa0144390:intron | 40.0% | |
| TGCTACAATGTTCAGTGAAG+GGG | - | chr1_4:3854993-3855012 | Msa0144390:intron | 40.0% | |
| ! | GGACTTGGCTTTCTCTAATA+GGG | - | chr1_4:3855014-3855033 | Msa0144390:intron | 40.0% |
| TCCGAGAATCTTCATCACAT+TGG | + | chr1_4:3855158-3855177 | None:intergenic | 40.0% | |
| CTGGTCAGTTATGACAGATT+TGG | + | chr1_4:3855421-3855440 | None:intergenic | 40.0% | |
| CAAATCTGTCATAACTGACC+AGG | - | chr1_4:3855419-3855438 | Msa0144390:CDS | 40.0% | |
| TGTCATAACTGACCAGGATT+TGG | - | chr1_4:3855425-3855444 | Msa0144390:CDS | 40.0% | |
| ! | TTGGCTATGAAAGCTGCTTT+AGG | - | chr1_4:3855444-3855463 | Msa0144390:CDS | 40.0% |
| TCCTAATATGCCATAAGCAG+AGG | + | chr1_4:3855497-3855516 | None:intergenic | 40.0% | |
| GACAACAATGAATGGCTTCA+AGG | - | chr1_4:3855657-3855676 | Msa0144390:intron | 40.0% | |
| ! | ATCTTGAGCATTGTAGTTGC+TGG | + | chr1_4:3856057-3856076 | None:intergenic | 40.0% |
| !! | AGTTTTTGGGGATATTGTGC+AGG | - | chr1_4:3856138-3856157 | Msa0144390:intron | 40.0% |
| CGCTGCAAAATAAAATGGTC+AGG | + | chr1_4:3856206-3856225 | None:intergenic | 40.0% | |
| GCACGCCAAAGATATTAAGA+AGG | - | chr1_4:3856294-3856313 | Msa0144390:CDS | 40.0% | |
| !! | ACATTTTGGCCAGATTCCAA+AGG | + | chr1_4:3856470-3856489 | None:intergenic | 40.0% |
| CACGCAATGCACAAACAAAA+GGG | - | chr1_4:3856546-3856565 | Msa0144390:CDS | 40.0% | |
| ACAAAAGGGAGAAAGAAGGA+TGG | - | chr1_4:3856560-3856579 | Msa0144390:CDS | 40.0% | |
| ! | AGAAAAGCATGTCATGAGTG+TGG | - | chr1_4:3856656-3856675 | Msa0144390:CDS | 40.0% |
| AGCCACACAGTCAACAAATG+TGG | - | chr1_4:3854489-3854508 | Msa0144390:CDS | 45.0% | |
| TTAGCTGCTGCTCCTAATGT+TGG | - | chr1_4:3854532-3854551 | Msa0144390:CDS | 45.0% | |
| TAGTGAACCTTGTAAGGGGA+TGG | - | chr1_4:3854567-3854586 | Msa0144390:CDS | 45.0% | |
| GGGGATGGAATTCAAATCTG+TGG | - | chr1_4:3854582-3854601 | Msa0144390:CDS | 45.0% | |
| !!! | TTTTAGGGCTAACCATGGGA+TGG | + | chr1_4:3854879-3854898 | None:intergenic | 45.0% |
| !!! | CACACTTTTAGGGCTAACCA+TGG | + | chr1_4:3854884-3854903 | None:intergenic | 45.0% |
| ! | AAGGAAGAAGGTATACCGAC+AGG | - | chr1_4:3854964-3854983 | Msa0144390:CDS | 45.0% |
| ! | AGAAGGTATACCGACAGGAA+AGG | - | chr1_4:3854969-3854988 | Msa0144390:CDS | 45.0% |
| AATGTTCAGTGAAGGGGACT+TGG | - | chr1_4:3854999-3855018 | Msa0144390:intron | 45.0% | |
| ! | GGGACTTGGCTTTCTCTAAT+AGG | - | chr1_4:3855013-3855032 | Msa0144390:intron | 45.0% |
| AATCCAACAAACGGGGCAAA+TGG | + | chr1_4:3855285-3855304 | None:intergenic | 45.0% | |
| CAGCTTTCATAGCCAAATCC+TGG | + | chr1_4:3855440-3855459 | None:intergenic | 45.0% | |
| GCCTCTGCTTATGGCATATT+AGG | - | chr1_4:3855493-3855512 | Msa0144390:CDS | 45.0% | |
| !! | ACGGACTGGACAACAATGAA+TGG | - | chr1_4:3855649-3855668 | Msa0144390:intron | 45.0% |
| GTCTACAGGGTCAAAACTTG+AGG | - | chr1_4:3855908-3855927 | Msa0144390:intron | 45.0% | |
| GCATGCTCAACAAGAAGCAA+AGG | - | chr1_4:3856319-3856338 | Msa0144390:CDS | 45.0% | |
| ! | CAGTGATGGAGTTTCTCCTT+TGG | - | chr1_4:3856451-3856470 | Msa0144390:intron | 45.0% |
| !! | GGAGTTTCTCCTTTGGAATC+TGG | - | chr1_4:3856458-3856477 | Msa0144390:intron | 45.0% |
| CAACCAAAATTGCTTGTCGG+AGG | - | chr1_4:3856490-3856509 | Msa0144390:CDS | 45.0% | |
| ! | CTTCCTCCGACAAGCAATTT+TGG | + | chr1_4:3856496-3856515 | None:intergenic | 45.0% |
| !! | CCTTTTGTTTGTGCATTGCG+TGG | + | chr1_4:3856548-3856567 | None:intergenic | 45.0% |
| CCACGCAATGCACAAACAAA+AGG | - | chr1_4:3856545-3856564 | Msa0144390:CDS | 45.0% | |
| TGTCATGAGTGTGGTGAATC+TGG | - | chr1_4:3856665-3856684 | Msa0144390:CDS | 45.0% | |
| TCACAACAGCAGAACTTGCA+AGG | - | chr1_4:3856688-3856707 | Msa0144390:CDS | 45.0% | |
| AGCCACACAGTCAACAAATG+TGG | - | chr1_4:3854489-3854508 | Msa0144390:CDS | 45.0% | |
| TTAGCTGCTGCTCCTAATGT+TGG | - | chr1_4:3854532-3854551 | Msa0144390:CDS | 45.0% | |
| TAGTGAACCTTGTAAGGGGA+TGG | - | chr1_4:3854567-3854586 | Msa0144390:CDS | 45.0% | |
| GGGGATGGAATTCAAATCTG+TGG | - | chr1_4:3854582-3854601 | Msa0144390:CDS | 45.0% | |
| !!! | TTTTAGGGCTAACCATGGGA+TGG | + | chr1_4:3854879-3854898 | None:intergenic | 45.0% |
| !!! | CACACTTTTAGGGCTAACCA+TGG | + | chr1_4:3854884-3854903 | None:intergenic | 45.0% |
| ! | AAGGAAGAAGGTATACCGAC+AGG | - | chr1_4:3854964-3854983 | Msa0144390:CDS | 45.0% |
| ! | AGAAGGTATACCGACAGGAA+AGG | - | chr1_4:3854969-3854988 | Msa0144390:CDS | 45.0% |
| AATGTTCAGTGAAGGGGACT+TGG | - | chr1_4:3854999-3855018 | Msa0144390:intron | 45.0% | |
| ! | GGGACTTGGCTTTCTCTAAT+AGG | - | chr1_4:3855013-3855032 | Msa0144390:intron | 45.0% |
| AATCCAACAAACGGGGCAAA+TGG | + | chr1_4:3855285-3855304 | None:intergenic | 45.0% | |
| CAGCTTTCATAGCCAAATCC+TGG | + | chr1_4:3855440-3855459 | None:intergenic | 45.0% | |
| GCCTCTGCTTATGGCATATT+AGG | - | chr1_4:3855493-3855512 | Msa0144390:CDS | 45.0% | |
| !! | ACGGACTGGACAACAATGAA+TGG | - | chr1_4:3855649-3855668 | Msa0144390:intron | 45.0% |
| GTCTACAGGGTCAAAACTTG+AGG | - | chr1_4:3855908-3855927 | Msa0144390:intron | 45.0% | |
| GCATGCTCAACAAGAAGCAA+AGG | - | chr1_4:3856319-3856338 | Msa0144390:CDS | 45.0% | |
| ! | CAGTGATGGAGTTTCTCCTT+TGG | - | chr1_4:3856451-3856470 | Msa0144390:intron | 45.0% |
| !! | GGAGTTTCTCCTTTGGAATC+TGG | - | chr1_4:3856458-3856477 | Msa0144390:intron | 45.0% |
| CAACCAAAATTGCTTGTCGG+AGG | - | chr1_4:3856490-3856509 | Msa0144390:CDS | 45.0% | |
| ! | CTTCCTCCGACAAGCAATTT+TGG | + | chr1_4:3856496-3856515 | None:intergenic | 45.0% |
| !! | CCTTTTGTTTGTGCATTGCG+TGG | + | chr1_4:3856548-3856567 | None:intergenic | 45.0% |
| CCACGCAATGCACAAACAAA+AGG | - | chr1_4:3856545-3856564 | Msa0144390:CDS | 45.0% | |
| TGTCATGAGTGTGGTGAATC+TGG | - | chr1_4:3856665-3856684 | Msa0144390:CDS | 45.0% | |
| TCACAACAGCAGAACTTGCA+AGG | - | chr1_4:3856688-3856707 | Msa0144390:CDS | 45.0% | |
| TGCTGCTCCTAATGTTGGTG+AGG | - | chr1_4:3854537-3854556 | Msa0144390:CDS | 50.0% | |
| ! | ATGCCATTTGCCCCGTTTGT+TGG | - | chr1_4:3855279-3855298 | Msa0144390:CDS | 50.0% |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | + | chr1_4:3855480-3855499 | None:intergenic | 50.0% |
| CTAGACATCGCCTCTGCTTA+TGG | - | chr1_4:3855484-3855503 | Msa0144390:CDS | 50.0% | |
| ! | TGATTTGAGGCGCACTCGTA+TGG | - | chr1_4:3856394-3856413 | Msa0144390:CDS | 50.0% |
| TGCTGCTCCTAATGTTGGTG+AGG | - | chr1_4:3854537-3854556 | Msa0144390:CDS | 50.0% | |
| ! | ATGCCATTTGCCCCGTTTGT+TGG | - | chr1_4:3855279-3855298 | Msa0144390:CDS | 50.0% |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | + | chr1_4:3855480-3855499 | None:intergenic | 50.0% |
| CTAGACATCGCCTCTGCTTA+TGG | - | chr1_4:3855484-3855503 | Msa0144390:CDS | 50.0% | |
| ! | TGATTTGAGGCGCACTCGTA+TGG | - | chr1_4:3856394-3856413 | Msa0144390:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 3854466 | 3856730 | 3854466 | ID=Msa0144390;Name=Msa0144390 |
| chr1_4 | mRNA | 3854466 | 3856730 | 3854466 | ID=Msa0144390-mRNA-1;Parent=Msa0144390;Name=Msa0144390-mRNA-1;_AED=0.07;_eAED=0.12;_QI=0|0|0|1|0|0|5|0|447 |
| chr1_4 | exon | 3856487 | 3856730 | 3856487 | ID=Msa0144390-mRNA-1:exon:1617;Parent=Msa0144390-mRNA-1 |
| chr1_4 | exon | 3856223 | 3856453 | 3856223 | ID=Msa0144390-mRNA-1:exon:1616;Parent=Msa0144390-mRNA-1 |
| chr1_4 | exon | 3855375 | 3855574 | 3855375 | ID=Msa0144390-mRNA-1:exon:1615;Parent=Msa0144390-mRNA-1 |
| chr1_4 | exon | 3855230 | 3855356 | 3855230 | ID=Msa0144390-mRNA-1:exon:1614;Parent=Msa0144390-mRNA-1 |
| chr1_4 | exon | 3854466 | 3855007 | 3854466 | ID=Msa0144390-mRNA-1:exon:1613;Parent=Msa0144390-mRNA-1 |
| chr1_4 | CDS | 3856487 | 3856730 | 3856487 | ID=Msa0144390-mRNA-1:cds;Parent=Msa0144390-mRNA-1 |
| chr1_4 | CDS | 3856223 | 3856453 | 3856223 | ID=Msa0144390-mRNA-1:cds;Parent=Msa0144390-mRNA-1 |
| chr1_4 | CDS | 3855375 | 3855574 | 3855375 | ID=Msa0144390-mRNA-1:cds;Parent=Msa0144390-mRNA-1 |
| chr1_4 | CDS | 3855230 | 3855356 | 3855230 | ID=Msa0144390-mRNA-1:cds;Parent=Msa0144390-mRNA-1 |
| chr1_4 | CDS | 3854466 | 3855007 | 3854466 | ID=Msa0144390-mRNA-1:cds;Parent=Msa0144390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
