Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149600 | XP_003588449.1 | 96.920 | 552 | 14 | 2 | 1 | 552 | 1 | 549 | 0.0 | 1102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149600 | sp|O24621|SIGC_ARATH | 44.123 | 519 | 238 | 10 | 53 | 551 | 84 | 570 | 1.67e-130 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149600 | G7I282 | 96.920 | 552 | 14 | 2 | 1 | 552 | 1 | 549 | 0.0 | 1102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0149600 | Msa1073570 | 0.803372 | 3.597188e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149600 | MtrunA17_Chr1g0146481 | 96.920 | 552 | 14 | 2 | 1 | 552 | 1 | 549 | 0.0 | 1102 |
| Msa0149600 | MtrunA17_Chr3g0145921 | 34.247 | 292 | 185 | 2 | 265 | 550 | 280 | 570 | 4.12e-57 | 200 |
| Msa0149600 | MtrunA17_Chr1g0180881 | 29.938 | 324 | 213 | 3 | 235 | 552 | 244 | 559 | 1.90e-44 | 165 |
| Msa0149600 | MtrunA17_Chr7g0264491 | 30.392 | 306 | 206 | 2 | 253 | 552 | 251 | 555 | 3.19e-42 | 159 |
| Msa0149600 | MtrunA17_Chr3g0090001 | 34.177 | 237 | 149 | 2 | 320 | 550 | 167 | 402 | 1.73e-34 | 134 |
| Msa0149600 | MtrunA17_Chr4g0021031 | 28.322 | 286 | 190 | 5 | 266 | 539 | 208 | 490 | 2.04e-23 | 103 |
| Msa0149600 | MtrunA17_Chr3g0126401 | 26.718 | 262 | 178 | 6 | 299 | 550 | 256 | 513 | 1.10e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149600 | AT3G53920.1 | 44.123 | 519 | 238 | 10 | 53 | 551 | 84 | 570 | 1.70e-131 | 395 |
| Msa0149600 | AT3G53920.2 | 42.737 | 358 | 161 | 8 | 53 | 397 | 84 | 410 | 2.67e-74 | 242 |
| Msa0149600 | AT1G08540.1 | 34.472 | 322 | 197 | 4 | 235 | 550 | 255 | 568 | 1.21e-61 | 213 |
| Msa0149600 | AT2G36990.1 | 31.148 | 366 | 228 | 6 | 204 | 552 | 187 | 545 | 9.07e-48 | 175 |
| Msa0149600 | AT5G13730.1 | 35.154 | 293 | 176 | 4 | 265 | 549 | 128 | 414 | 3.47e-43 | 159 |
| Msa0149600 | AT1G64860.1 | 28.854 | 253 | 159 | 5 | 309 | 546 | 249 | 495 | 1.51e-23 | 104 |
| Msa0149600 | AT1G64860.2 | 29.048 | 210 | 130 | 4 | 309 | 503 | 249 | 454 | 1.80e-20 | 95.1 |
| Msa0149600 | AT5G24120.1 | 25.794 | 252 | 173 | 6 | 309 | 550 | 269 | 516 | 2.48e-16 | 82.4 |
| Msa0149600 | AT5G24120.3 | 25.794 | 252 | 173 | 6 | 309 | 550 | 269 | 516 | 2.48e-16 | 82.4 |
| Msa0149600 | AT5G24120.2 | 25.794 | 252 | 173 | 6 | 309 | 550 | 269 | 516 | 2.48e-16 | 82.4 |
Find 116 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGACCTTCCGTGCTTTC+TGG | 0.088168 | 1_4:-10454108 | None:intergenic |
| CTCAAAGTTGAATTATTATT+TGG | 0.140183 | 1_4:+10455383 | Msa0149600:CDS |
| TTGGATCTGTAGTTTATTAT+TGG | 0.230788 | 1_4:+10455402 | Msa0149600:exon |
| GTCACATTTCGGTTTGTTAA+TGG | 0.244701 | 1_4:+10451800 | Msa0149600:CDS |
| TCTTCTTCATCTTCATCTTC+TGG | 0.245742 | 1_4:+10450050 | Msa0149600:CDS |
| CAACTTCAACAACACTTTCA+TGG | 0.261949 | 1_4:+10449909 | Msa0149600:five_prime_UTR |
| TGGAACATAGAACTAAATTA+TGG | 0.271035 | 1_4:+10449929 | Msa0149600:exon |
| TAAATTATGGGTCTCTGTTT+TGG | 0.274252 | 1_4:+10449942 | Msa0149600:exon |
| CTTTGCAATTTCAAGATCAT+TGG | 0.280476 | 1_4:-10454152 | None:intergenic |
| AAGATCATTGGGATATTTCA+TGG | 0.329371 | 1_4:-10454140 | None:intergenic |
| CTGTATAGTCATCTACTTTG+TGG | 0.330993 | 1_4:-10452016 | None:intergenic |
| CCCAAGTCTCTTGAATATAT+AGG | 0.337893 | 1_4:+10455279 | Msa0149600:CDS |
| TGTTTCATGACAGTCTCTTC+AGG | 0.341616 | 1_4:-10455159 | None:intergenic |
| CCAAGTCTCTTGAATATATA+GGG | 0.343015 | 1_4:+10455280 | Msa0149600:CDS |
| AGTAGCTGGGCAGAAGCATC+TGG | 0.382458 | 1_4:+10452407 | Msa0149600:CDS |
| ATCTGTATATGAGGATTATG+AGG | 0.385095 | 1_4:+10455494 | Msa0149600:intron |
| AAGGAGAAGAGTGGTGAAGA+GGG | 0.387482 | 1_4:-10450001 | None:intergenic |
| TATACTTTGCTAGAAAATAC+AGG | 0.389187 | 1_4:+10452516 | Msa0149600:CDS |
| ATTTCATAGGTAGGATATAT+AGG | 0.391468 | 1_4:+10453823 | Msa0149600:intron |
| AAGTGGTAAGCTTGAGTAGC+TGG | 0.392151 | 1_4:+10452393 | Msa0149600:CDS |
| CCCTATATATTCAAGAGACT+TGG | 0.394252 | 1_4:-10455280 | None:intergenic |
| AGCTTTGGAAGATTTGCTTC+AGG | 0.398464 | 1_4:+10452550 | Msa0149600:CDS |
| AGAGAGGAAGATATGTGAAT+TGG | 0.401706 | 1_4:-10450030 | None:intergenic |
| GTTTGTCTAACAACATCTTT+CGG | 0.411275 | 1_4:+10451930 | Msa0149600:CDS |
| TTTGCAATTTCAAGATCATT+GGG | 0.411874 | 1_4:-10454151 | None:intergenic |
| CAGGGGTATGGGAATAGCTT+TGG | 0.414935 | 1_4:+10452535 | Msa0149600:CDS |
| TTTCCCTCGAGTCCAAGCTT+TGG | 0.419613 | 1_4:-10455212 | None:intergenic |
| TGCTAGAAAATACAGGGGTA+TGG | 0.433372 | 1_4:+10452523 | Msa0149600:CDS |
| CCTATGTGCAGTACTGGATA+AGG | 0.435511 | 1_4:+10453899 | Msa0149600:CDS |
| CCCTCGAGTCCAAGCTTTGG+AGG | 0.440751 | 1_4:-10455209 | None:intergenic |
| TCTTCTTGATTATCGTCTAA+AGG | 0.440788 | 1_4:-10452128 | None:intergenic |
| TTTGCTTTCAACAATTTATG+AGG | 0.443404 | 1_4:+10451381 | Msa0149600:CDS |
| ATCATCAGCATTGGAAGCTC+CGG | 0.447296 | 1_4:+10451450 | Msa0149600:CDS |
| GGAACATAGAACTAAATTAT+GGG | 0.450008 | 1_4:+10449930 | Msa0149600:exon |
| TGTCCATTCTAGTAAAAGAA+AGG | 0.452039 | 1_4:+10452049 | Msa0149600:CDS |
| TCTAGCAAAGTATAGAACTA+AGG | 0.459983 | 1_4:-10452507 | None:intergenic |
| TGTCAAATCGCTCTGCTCCT+TGG | 0.471889 | 1_4:-10453852 | None:intergenic |
| GAAAATAGAAGAAGAAAGAG+AGG | 0.479685 | 1_4:+10452071 | Msa0149600:CDS |
| TTCAGGTAAATAAAGGAAAG+AGG | 0.481787 | 1_4:+10451724 | Msa0149600:intron |
| CCGAAATGTGACTCCTCAAA+AGG | 0.487396 | 1_4:-10451789 | None:intergenic |
| GTATCGCGGCATTGAATACA+TGG | 0.488890 | 1_4:+10454240 | Msa0149600:CDS |
| TCTCAACCTATGTGCAGTAC+TGG | 0.489155 | 1_4:+10453893 | Msa0149600:CDS |
| AAGTTAGCAAAGAATGGATA+AGG | 0.493553 | 1_4:+10455313 | Msa0149600:CDS |
| AAAGGAGAAGAGTGGTGAAG+AGG | 0.495785 | 1_4:-10450002 | None:intergenic |
| AAGAGCGGTGATTGCTCAAA+GGG | 0.498014 | 1_4:+10452208 | Msa0149600:CDS |
| AGCATTGGAAGCTCCGGAAA+AGG | 0.500259 | 1_4:+10451456 | Msa0149600:CDS |
| AAAACGTTATCAGTTGTTGC+CGG | 0.500917 | 1_4:+10455600 | Msa0149600:three_prime_UTR |
| GGAAATGTCAAAAGGTGTAA+AGG | 0.501027 | 1_4:+10452235 | Msa0149600:CDS |
| AAGAAACTGTTCTTAGACAA+TGG | 0.501314 | 1_4:-10454213 | None:intergenic |
| GGACTCTCTATCGACAAATC+AGG | 0.501941 | 1_4:-10455138 | None:intergenic |
| AGGTTTCTTCTAAAACACTA+AGG | 0.507499 | 1_4:-10451827 | None:intergenic |
| ACATGATATCCTCCAAAGCT+TGG | 0.510778 | 1_4:+10455200 | Msa0149600:CDS |
| TTTCCATAGCACCTTCCTCT+CGG | 0.514927 | 1_4:+10452099 | Msa0149600:CDS |
| CTTTCAACAATTTATGAGGA+AGG | 0.515733 | 1_4:+10451385 | Msa0149600:CDS |
| CTTGAAATTGCAAAGATGAC+AGG | 0.516829 | 1_4:+10454160 | Msa0149600:CDS |
| AAGGAAATCAATGTCAAGAA+TGG | 0.518039 | 1_4:+10453918 | Msa0149600:CDS |
| GCTAGAAAATACAGGGGTAT+GGG | 0.518577 | 1_4:+10452524 | Msa0149600:CDS |
| CAAATACTAATCCTACGATT+CGG | 0.520746 | 1_4:+10455237 | Msa0149600:CDS |
| TTGCAAGGGAGATGAAGAAC+TGG | 0.521191 | 1_4:+10449819 | None:intergenic |
| CTACAACAGCAACTGTATCA+TGG | 0.521397 | 1_4:+10452446 | Msa0149600:CDS |
| CCTATATATTCAAGAGACTT+GGG | 0.523071 | 1_4:-10455279 | None:intergenic |
| AGATCCATTACGTTATTCAC+CGG | 0.525660 | 1_4:+10452148 | Msa0149600:CDS |
| ATATGTGAATTGGTGAAGAA+AGG | 0.527515 | 1_4:-10450020 | None:intergenic |
| GGACCGAGAGGAAGGTGCTA+TGG | 0.531414 | 1_4:-10452102 | None:intergenic |
| CACAAAGTAGATGACTATAC+AGG | 0.532204 | 1_4:+10452017 | Msa0149600:CDS |
| AAAGCTTGGACTCGAGGGAA+AGG | 0.534853 | 1_4:+10455214 | Msa0149600:CDS |
| TGATTCTGAAGCACTGAGGT+TGG | 0.542590 | 1_4:+10451854 | Msa0149600:CDS |
| ATTGTAGAGATGAGTTGATA+CGG | 0.546155 | 1_4:+10452474 | Msa0149600:CDS |
| CCTTATCCAGTACTGCACAT+AGG | 0.551255 | 1_4:-10453899 | None:intergenic |
| TCCTCCAAAGCTTGGACTCG+AGG | 0.555764 | 1_4:+10455208 | Msa0149600:CDS |
| CCTCCAAAGCTTGGACTCGA+GGG | 0.556444 | 1_4:+10455209 | Msa0149600:CDS |
| GAAAGCAAAGACAACCTCAC+GGG | 0.557378 | 1_4:-10451367 | None:intergenic |
| AGTGGTAAGCTTGAGTAGCT+GGG | 0.558761 | 1_4:+10452394 | Msa0149600:CDS |
| TTGATTATCGTCTAAAGGCA+AGG | 0.559659 | 1_4:-10452123 | None:intergenic |
| CCGGAAAAGGATTTATTGCA+AGG | 0.561432 | 1_4:+10451469 | Msa0149600:CDS |
| TATATTCAAGAGACTTGGGT+TGG | 0.562072 | 1_4:-10455275 | None:intergenic |
| GAGCGATTTGACAGTACAAG+AGG | 0.568669 | 1_4:+10453862 | Msa0149600:CDS |
| ATATTGCAACTAGAGAAGCT+TGG | 0.570676 | 1_4:+10451888 | Msa0149600:CDS |
| ACTGCACATAGGTTGAGAAT+CGG | 0.572145 | 1_4:-10453888 | None:intergenic |
| TGGGTTGGTGATCATCAGTA+AGG | 0.572262 | 1_4:-10455260 | None:intergenic |
| AAAGAGCGGTGATTGCTCAA+AGG | 0.572707 | 1_4:+10452207 | Msa0149600:CDS |
| TGGTGAAGAAAGGAGAAGAG+TGG | 0.574057 | 1_4:-10450010 | None:intergenic |
| AAAGATGACAGGTCTTTCAC+TGG | 0.574729 | 1_4:+10454171 | Msa0149600:CDS |
| AAAGGCAAGGACCGAGAGGA+AGG | 0.576855 | 1_4:-10452110 | None:intergenic |
| CATCAGTAAGGCCGAATCGT+AGG | 0.579004 | 1_4:-10455248 | None:intergenic |
| TGAAAGTGTTGTTGAAGTTG+AGG | 0.579574 | 1_4:-10449906 | None:intergenic |
| TCTGTATATGAGGATTATGA+GGG | 0.585925 | 1_4:+10455495 | Msa0149600:intron |
| AGGGAGGTGGAAATGTCAAA+AGG | 0.586693 | 1_4:+10452227 | Msa0149600:CDS |
| AATTAGAACAGCTATAGAAG+AGG | 0.591677 | 1_4:+10452361 | Msa0149600:CDS |
| ATACTTTGCTAGAAAATACA+GGG | 0.594173 | 1_4:+10452517 | Msa0149600:CDS |
| GAAGCCGGTGAATAACGTAA+TGG | 0.596315 | 1_4:-10452152 | None:intergenic |
| GAAATCAATGTCAAGAATGG+TGG | 0.609181 | 1_4:+10453921 | Msa0149600:CDS |
| TAAGTCAGATCCAGAAAGCA+CGG | 0.609321 | 1_4:+10454098 | Msa0149600:CDS |
| AGCATCTGGAGTTGATGAGA+AGG | 0.609902 | 1_4:+10452421 | Msa0149600:CDS |
| GTGTTGTTGAAGTTGAGGAA+AGG | 0.612811 | 1_4:-10449901 | None:intergenic |
| GGGAGATGAAGAACTGGTGG+TGG | 0.613888 | 1_4:+10449825 | Msa0149600:five_prime_UTR |
| GGTGATTGCTCAAAGGGAGG+TGG | 0.619765 | 1_4:+10452214 | Msa0149600:CDS |
| AGAAGAGGATACAAAGCAAG+TGG | 0.626241 | 1_4:+10452376 | Msa0149600:CDS |
| CAGTGCTTCAGAATCAGCAA+AGG | 0.632064 | 1_4:-10451847 | None:intergenic |
| TCAGATCCAGAAAGCACGGA+AGG | 0.632240 | 1_4:+10454102 | Msa0149600:CDS |
| AAGATGAAGATGAAGAAGAG+AGG | 0.645707 | 1_4:-10450046 | None:intergenic |
| GGATATATAGGTGTTCTCCA+AGG | 0.651530 | 1_4:+10453835 | Msa0149600:CDS |
| AAACTTTATTCAACCCCGTG+AGG | 0.659786 | 1_4:+10451353 | Msa0149600:CDS |
| GTCTAAAGGCAAGGACCGAG+AGG | 0.666537 | 1_4:-10452114 | None:intergenic |
| ACAGTTTCTTCAATGTATCG+CGG | 0.667801 | 1_4:+10454226 | Msa0149600:CDS |
| AGCGGTGATTGCTCAAAGGG+AGG | 0.670598 | 1_4:+10452211 | Msa0149600:CDS |
| TGAAAGCAAAGACAACCTCA+CGG | 0.674976 | 1_4:-10451368 | None:intergenic |
| GCAAGGAGGAGAACTAACAA+AGG | 0.676146 | 1_4:+10451486 | Msa0149600:CDS |
| AAAGCAAAGACAACCTCACG+GGG | 0.681391 | 1_4:-10451366 | None:intergenic |
| AGTCTCTTGAATATATAGGG+AGG | 0.683476 | 1_4:+10455283 | Msa0149600:CDS |
| GAAAAGGATTTATTGCAAGG+AGG | 0.683567 | 1_4:+10451472 | Msa0149600:CDS |
| ATGGTGGCAAAATATGCTCG+AGG | 0.686792 | 1_4:+10453937 | Msa0149600:CDS |
| CAAGGGAGATGAAGAACTGG+TGG | 0.702546 | 1_4:+10449822 | Msa0149600:five_prime_UTR |
| TTGCTGATTCTGAAGCACTG+AGG | 0.712185 | 1_4:+10451850 | Msa0149600:CDS |
| AGTGCAGTTCGATATGCATG+AGG | 0.733742 | 1_4:-10451955 | None:intergenic |
| TACTTTGCTAGAAAATACAG+GGG | 0.744271 | 1_4:+10452518 | Msa0149600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAGTATAATACAAAA+AGG | - | chr1_4:10450082-10450101 | None:intergenic | 10.0% |
| !! | AATATTAACATTAATAAACT+CGG | - | chr1_4:10451226-10451245 | None:intergenic | 10.0% |
| !!! | TAAATATTTTCGTAATTTAA+AGG | - | chr1_4:10452303-10452322 | None:intergenic | 10.0% |
| !!! | TTGTTTTTTATATATTATTG+TGG | + | chr1_4:10452605-10452624 | Msa0149600:intron | 10.0% |
| !! | GTTTATATAAAAATGTTATT+TGG | - | chr1_4:10455028-10455047 | None:intergenic | 10.0% |
| !!! | TTTTGTTACATAAAAAGTTA+AGG | - | chr1_4:10449873-10449892 | None:intergenic | 15.0% |
| !! | ATATTTCGTTACAATATTTA+GGG | + | chr1_4:10450563-10450582 | Msa0149600:intron | 15.0% |
| !!! | TATTCATTCTTCTAAAAATA+AGG | - | chr1_4:10451646-10451665 | None:intergenic | 15.0% |
| !! | AAATACTAAAAATAAAAGAG+CGG | + | chr1_4:10452193-10452212 | Msa0149600:CDS | 15.0% |
| !! | CAATAAAATATTGAGTAATT+TGG | + | chr1_4:10452270-10452289 | Msa0149600:intron | 15.0% |
| !!! | TTTTTTATATATTATTGTGG+AGG | + | chr1_4:10452608-10452627 | Msa0149600:intron | 15.0% |
| !!! | TTTTTTAGATGAAAACTTAA+TGG | - | chr1_4:10452877-10452896 | None:intergenic | 15.0% |
| !! | TTCATCTAAAAAATAAACTT+CGG | + | chr1_4:10452884-10452903 | Msa0149600:intron | 15.0% |
| !! | AATTTAGTTAAAAGTAATGA+TGG | - | chr1_4:10453155-10453174 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGAAGAAACAAT+GGG | - | chr1_4:10454293-10454312 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGAAGAAACAA+TGG | - | chr1_4:10454294-10454313 | None:intergenic | 15.0% |
| !!! | TAATTCAACAACTTTTTAAA+TGG | + | chr1_4:10454677-10454696 | Msa0149600:intron | 15.0% |
| !!! | AAATTCAACAACTTTTTAAA+TGG | - | chr1_4:10454986-10455005 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCTGTATATG+AGG | + | chr1_4:10455485-10455504 | Msa0149600:intron | 15.0% |
| !!! | TGATAGTGTAAAATAATTGT+AGG | - | chr1_4:10450315-10450334 | None:intergenic | 20.0% |
| !! | AAAATAATTGTATACTGATC+AGG | + | chr1_4:10450389-10450408 | Msa0149600:intron | 20.0% |
| !! | GATATTTCGTTACAATATTT+AGG | + | chr1_4:10450562-10450581 | Msa0149600:intron | 20.0% |
| !! | AATTTCAATATTGTTGGATT+TGG | - | chr1_4:10450591-10450610 | None:intergenic | 20.0% |
| !! | ATACACAATTTCAATATTGT+TGG | - | chr1_4:10450597-10450616 | None:intergenic | 20.0% |
| !!! | ATATTTTCGTATTAACATTG+TGG | - | chr1_4:10451133-10451152 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCACTCTGAATTT+TGG | + | chr1_4:10451301-10451320 | Msa0149600:intron | 20.0% |
| !!! | TTTTTTTCACTCTGAATTTT+GGG | + | chr1_4:10451302-10451321 | Msa0149600:intron | 20.0% |
| !!! | TTTATGTTGATAGCTAAAAT+TGG | + | chr1_4:10451674-10451693 | Msa0149600:intron | 20.0% |
| !!! | TTATGTTGATAGCTAAAATT+GGG | + | chr1_4:10451675-10451694 | Msa0149600:intron | 20.0% |
| !!! | CTTTAAAATGTTTGTTTTTC+AGG | + | chr1_4:10451707-10451726 | Msa0149600:intron | 20.0% |
| !!! | TTTGTTTTTCAGGTAAATAA+AGG | + | chr1_4:10451717-10451736 | Msa0149600:intron | 20.0% |
| !!! | TTTAAATTTTGTACTACTTC+AGG | + | chr1_4:10452319-10452338 | Msa0149600:intron | 20.0% |
| !! | ATATATGTTTGTGTATTAGA+TGG | + | chr1_4:10452778-10452797 | Msa0149600:intron | 20.0% |
| !!! | TTTGTATTTTCAACTATCAT+GGG | + | chr1_4:10453020-10453039 | Msa0149600:intron | 20.0% |
| !!! | ATTTTCTTCACTCAAAATTT+TGG | - | chr1_4:10453106-10453125 | None:intergenic | 20.0% |
| !!! | AAGTATTTTTGTAATCTTCA+AGG | + | chr1_4:10453186-10453205 | Msa0149600:intron | 20.0% |
| !!! | AGTTTCAAATTTTAAACATG+AGG | + | chr1_4:10453218-10453237 | Msa0149600:intron | 20.0% |
| !!! | TTTTGTAAATACTTTATAGC+AGG | + | chr1_4:10453651-10453670 | Msa0149600:intron | 20.0% |
| !! | AAAAAAAAGAAGAAACAATG+GGG | - | chr1_4:10454292-10454311 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTGTTATGTTG+TGG | + | chr1_4:10454314-10454333 | Msa0149600:intron | 20.0% |
| !!! | TTTTAAATAAAATTACCAGC+CGG | - | chr1_4:10454341-10454360 | None:intergenic | 20.0% |
| !! | TCAATAGTAAGAAATATGTT+TGG | - | chr1_4:10454444-10454463 | None:intergenic | 20.0% |
| !!! | ATTAAAATAGATTCGACTTT+TGG | + | chr1_4:10454477-10454496 | Msa0149600:intron | 20.0% |
| !!! | AACTTTTTAAATGGTTAACA+TGG | - | chr1_4:10454977-10454996 | None:intergenic | 20.0% |
| !! | CTCAAAGTTGAATTATTATT+TGG | + | chr1_4:10455383-10455402 | Msa0149600:CDS | 20.0% |
| ! | TGGAACATAGAACTAAATTA+TGG | + | chr1_4:10449929-10449948 | Msa0149600:exon | 25.0% |
| ! | GGAACATAGAACTAAATTAT+GGG | + | chr1_4:10449930-10449949 | Msa0149600:exon | 25.0% |
| ! | ATATCATTACTCTAAGTGAA+TGG | - | chr1_4:10450119-10450138 | None:intergenic | 25.0% |
| ! | TATATCATACAAATGAGTGT+TGG | - | chr1_4:10450267-10450286 | None:intergenic | 25.0% |
| ! | CTTGAGAATAGTTTATAAAG+AGG | + | chr1_4:10450490-10450509 | Msa0149600:intron | 25.0% |
| ! | AATATTGTAACGAAATATCG+AGG | - | chr1_4:10450561-10450580 | None:intergenic | 25.0% |
| ! | TTTGCTTTCAACAATTTATG+AGG | + | chr1_4:10451381-10451400 | Msa0149600:CDS | 25.0% |
| ! | CATAATTGTATACAAAGCAA+AGG | - | chr1_4:10451525-10451544 | None:intergenic | 25.0% |
| ! | CTTTGCTTTGTATACAATTA+TGG | + | chr1_4:10451523-10451542 | Msa0149600:intron | 25.0% |
| !!! | TATGTTGATAGCTAAAATTG+GGG | + | chr1_4:10451676-10451695 | Msa0149600:intron | 25.0% |
| !! | TTTCCTTTCTTTTACTAGAA+TGG | - | chr1_4:10452055-10452074 | None:intergenic | 25.0% |
| !! | ATTTTCGTAATTTAAAGGCA+TGG | - | chr1_4:10452298-10452317 | None:intergenic | 25.0% |
| ! | TATACTTTGCTAGAAAATAC+AGG | + | chr1_4:10452516-10452535 | Msa0149600:CDS | 25.0% |
| ! | ATACTTTGCTAGAAAATACA+GGG | + | chr1_4:10452517-10452536 | Msa0149600:CDS | 25.0% |
| ! | TTTAGATGAAAACTTAATGG+AGG | - | chr1_4:10452874-10452893 | None:intergenic | 25.0% |
| !! | CTTTGTATTTTCAACTATCA+TGG | + | chr1_4:10453019-10453038 | Msa0149600:intron | 25.0% |
| ! | AAAAATAGAGAATGATTAGC+AGG | + | chr1_4:10453070-10453089 | Msa0149600:intron | 25.0% |
| ! | AAAATAGAGAATGATTAGCA+GGG | + | chr1_4:10453071-10453090 | Msa0149600:intron | 25.0% |
| ! | TGTAATCTTCAAGGAATATA+AGG | + | chr1_4:10453195-10453214 | Msa0149600:intron | 25.0% |
| !! | TCAAATTTTAAACATGAGGT+TGG | + | chr1_4:10453222-10453241 | Msa0149600:intron | 25.0% |
| !! | CAAATTTTAAACATGAGGTT+GGG | + | chr1_4:10453223-10453242 | Msa0149600:intron | 25.0% |
| !! | AAATTTTAAACATGAGGTTG+GGG | + | chr1_4:10453224-10453243 | Msa0149600:intron | 25.0% |
| !! | GTATAATTGGGCAATATTTT+TGG | + | chr1_4:10453312-10453331 | Msa0149600:intron | 25.0% |
| !! | CATTTTGTAAATATGGCTTT+AGG | + | chr1_4:10453576-10453595 | Msa0149600:intron | 25.0% |
| ! | TAAATACTTTATAGCAGGAA+AGG | + | chr1_4:10453656-10453675 | Msa0149600:intron | 25.0% |
| ! | AAATACTTTATAGCAGGAAA+GGG | + | chr1_4:10453657-10453676 | Msa0149600:intron | 25.0% |
| ! | ATTGATCAAACCATTAATGA+TGG | - | chr1_4:10453706-10453725 | None:intergenic | 25.0% |
| !! | AATGTTTTCATGTTGACAAT+AGG | + | chr1_4:10453723-10453742 | Msa0149600:intron | 25.0% |
| ! | TTATTCTCTTCACATTTCAT+AGG | + | chr1_4:10453810-10453829 | Msa0149600:intron | 25.0% |
| ! | ATTTCATAGGTAGGATATAT+AGG | + | chr1_4:10453823-10453842 | Msa0149600:intron | 25.0% |
| ! | CGAAAAGAAAAATAACACAA+AGG | - | chr1_4:10454046-10454065 | None:intergenic | 25.0% |
| !!! | CTTTTCGTTATTGTTTTTAG+TGG | + | chr1_4:10454059-10454078 | Msa0149600:intron | 25.0% |
| ! | TTTGCAATTTCAAGATCATT+GGG | - | chr1_4:10454154-10454173 | None:intergenic | 25.0% |
| !!! | AGCCATTTTAAACAACTATT+TGG | + | chr1_4:10454647-10454666 | Msa0149600:intron | 25.0% |
| !!! | GCCATTTTAAACAACTATTT+GGG | + | chr1_4:10454648-10454667 | Msa0149600:intron | 25.0% |
| !! | CCATTTTAAACAACTATTTG+GGG | + | chr1_4:10454649-10454668 | Msa0149600:intron | 25.0% |
| ! | TAGTTTCATGAGTAGTTAAT+GGG | + | chr1_4:10454724-10454743 | Msa0149600:intron | 25.0% |
| ! | GATAGTAATGTTCAAATTTG+TGG | - | chr1_4:10454797-10454816 | None:intergenic | 25.0% |
| !! | TTTTCAAATCTACATGTAGT+TGG | - | chr1_4:10454833-10454852 | None:intergenic | 25.0% |
| ! | ATTGATCACATTTCAAATTG+TGG | + | chr1_4:10454866-10454885 | Msa0149600:intron | 25.0% |
| ! | GGTTAATAAAGTTCTGTAAA+TGG | + | chr1_4:10454887-10454906 | Msa0149600:intron | 25.0% |
| !!! | ATATGGTTGATAGATATATC+AGG | - | chr1_4:10454926-10454945 | None:intergenic | 25.0% |
| !! | TGTTATTTGGACATCAATTT+AGG | - | chr1_4:10455015-10455034 | None:intergenic | 25.0% |
| !! | ATAAACATTTTGTGTTCATG+CGG | + | chr1_4:10455042-10455061 | Msa0149600:intron | 25.0% |
| !! | TTTTCAAAGTTAGCAAAGAA+TGG | + | chr1_4:10455307-10455326 | Msa0149600:CDS | 25.0% |
| ! | TTGGATCTGTAGTTTATTAT+TGG | + | chr1_4:10455402-10455421 | Msa0149600:exon | 25.0% |
| !! | TCTATTTTCATCTGTATATG+AGG | + | chr1_4:10455449-10455468 | Msa0149600:three_prime_UTR | 25.0% |
| ! | TAAATTATGGGTCTCTGTTT+TGG | + | chr1_4:10449942-10449961 | Msa0149600:exon | 30.0% |
| ATATGTGAATTGGTGAAGAA+AGG | - | chr1_4:10450023-10450042 | None:intergenic | 30.0% | |
| ! | TTGAACTAAGAAGCATACAT+AGG | - | chr1_4:10450816-10450835 | None:intergenic | 30.0% |
| AAATCCGGAATTCAAAAATC+CGG | + | chr1_4:10450945-10450964 | Msa0149600:intron | 30.0% | |
| ! | AATTCCGGATTTTTGAATTC+CGG | - | chr1_4:10450952-10450971 | None:intergenic | 30.0% |
| TAGTCAAAGATTGTTAGCAA+GGG | - | chr1_4:10451055-10451074 | None:intergenic | 30.0% | |
| CTTTCAACAATTTATGAGGA+AGG | + | chr1_4:10451385-10451404 | Msa0149600:CDS | 30.0% | |
| !! | ATGTTGATAGCTAAAATTGG+GGG | + | chr1_4:10451677-10451696 | Msa0149600:intron | 30.0% |
| TTCAGGTAAATAAAGGAAAG+AGG | + | chr1_4:10451724-10451743 | Msa0149600:intron | 30.0% | |
| !! | AGGTTTCTTCTAAAACACTA+AGG | - | chr1_4:10451830-10451849 | None:intergenic | 30.0% |
| GTTTGTCTAACAACATCTTT+CGG | + | chr1_4:10451930-10451949 | Msa0149600:CDS | 30.0% | |
| TGTCCATTCTAGTAAAAGAA+AGG | + | chr1_4:10452049-10452068 | Msa0149600:CDS | 30.0% | |
| GAAAATAGAAGAAGAAAGAG+AGG | + | chr1_4:10452071-10452090 | Msa0149600:CDS | 30.0% | |
| TCTTCTTGATTATCGTCTAA+AGG | - | chr1_4:10452131-10452150 | None:intergenic | 30.0% | |
| AATTAGAACAGCTATAGAAG+AGG | + | chr1_4:10452361-10452380 | Msa0149600:CDS | 30.0% | |
| !! | ATTGTAGAGATGAGTTGATA+CGG | + | chr1_4:10452474-10452493 | Msa0149600:CDS | 30.0% |
| TCTAGCAAAGTATAGAACTA+AGG | - | chr1_4:10452510-10452529 | None:intergenic | 30.0% | |
| TACTTTGCTAGAAAATACAG+GGG | + | chr1_4:10452518-10452537 | Msa0149600:CDS | 30.0% | |
| !! | ATTTTCTAAGTGTCATTGTG+CGG | + | chr1_4:10452574-10452593 | Msa0149600:intron | 30.0% |
| ATGTTTGTGTATTAGATGGA+AGG | + | chr1_4:10452782-10452801 | Msa0149600:intron | 30.0% | |
| GTATTAGATGGAAGGATATT+AGG | + | chr1_4:10452790-10452809 | Msa0149600:intron | 30.0% | |
| ! | TTCTTCACTCAAAATTTTGG+TGG | - | chr1_4:10453103-10453122 | None:intergenic | 30.0% |
| TGAGTGAAGAAAATGATCAT+CGG | + | chr1_4:10453112-10453131 | Msa0149600:intron | 30.0% | |
| TATTAAACTCTGTTCACTCA+AGG | + | chr1_4:10453268-10453287 | Msa0149600:intron | 30.0% | |
| AAGGTGATTTGAAAGATTCA+AGG | + | chr1_4:10453287-10453306 | Msa0149600:intron | 30.0% | |
| AGGTGATTTGAAAGATTCAA+GGG | + | chr1_4:10453288-10453307 | Msa0149600:intron | 30.0% | |
| ! | AAGATTCAAGGGTGTATAAT+TGG | + | chr1_4:10453299-10453318 | Msa0149600:intron | 30.0% |
| ! | AGATTCAAGGGTGTATAATT+GGG | + | chr1_4:10453300-10453319 | Msa0149600:intron | 30.0% |
| AATATAGGCAAATATACTGC+CGG | - | chr1_4:10453349-10453368 | None:intergenic | 30.0% | |
| ! | ACAGTTGATTATGATGATGT+TGG | + | chr1_4:10453469-10453488 | Msa0149600:intron | 30.0% |
| !! | GACAGAGCATTTTGTAAATA+TGG | + | chr1_4:10453569-10453588 | Msa0149600:intron | 30.0% |
| !! | AAAGAGCATTCATGTATATG+TGG | - | chr1_4:10453777-10453796 | None:intergenic | 30.0% |
| ATGTGAAGAGAATAACATAC+AGG | - | chr1_4:10453805-10453824 | None:intergenic | 30.0% | |
| AAGGAAATCAATGTCAAGAA+TGG | + | chr1_4:10453918-10453937 | Msa0149600:CDS | 30.0% | |
| TAACACAAAGGTCAAATTCA+TGG | - | chr1_4:10454034-10454053 | None:intergenic | 30.0% | |
| AAGATCATTGGGATATTTCA+TGG | - | chr1_4:10454143-10454162 | None:intergenic | 30.0% | |
| CTTTGCAATTTCAAGATCAT+TGG | - | chr1_4:10454155-10454174 | None:intergenic | 30.0% | |
| AAGAAACTGTTCTTAGACAA+TGG | - | chr1_4:10454216-10454235 | None:intergenic | 30.0% | |
| CAACATTGCTTTCTCAATTT+AGG | - | chr1_4:10454408-10454427 | None:intergenic | 30.0% | |
| !! | AGATTCGACTTTTGGAAATT+AGG | + | chr1_4:10454485-10454504 | Msa0149600:intron | 30.0% |
| AGTCTCGTCAAATTTATGTA+AGG | - | chr1_4:10454511-10454530 | None:intergenic | 30.0% | |
| ATGTCCACCAAAAAAAAAAC+TGG | + | chr1_4:10454538-10454557 | Msa0149600:intron | 30.0% | |
| TGTCCACCAAAAAAAAAACT+GGG | + | chr1_4:10454539-10454558 | Msa0149600:intron | 30.0% | |
| !!! | TCAACACCCAGTTTTTTTTT+TGG | - | chr1_4:10454548-10454567 | None:intergenic | 30.0% |
| CCCCAAATAGTTGTTTAAAA+TGG | - | chr1_4:10454652-10454671 | None:intergenic | 30.0% | |
| GTAGTTTCATGAGTAGTTAA+TGG | + | chr1_4:10454723-10454742 | Msa0149600:intron | 30.0% | |
| ! | GTTAATGGGTATATCAAGAT+TGG | + | chr1_4:10454738-10454757 | Msa0149600:intron | 30.0% |
| GGTTAATCAAGTTCAGTTAA+TGG | - | chr1_4:10454776-10454795 | None:intergenic | 30.0% | |
| ! | GGTTAATGAAGTGTTAGATA+TGG | - | chr1_4:10454943-10454962 | None:intergenic | 30.0% |
| GTTAACATGGTTTATACACA+TGG | - | chr1_4:10454964-10454983 | None:intergenic | 30.0% | |
| GCAGAATTAATATACCAACA+TGG | - | chr1_4:10455107-10455126 | None:intergenic | 30.0% | |
| TGTTGGTATATTAATTCTGC+AGG | + | chr1_4:10455107-10455126 | Msa0149600:intron | 30.0% | |
| GTTGGTATATTAATTCTGCA+GGG | + | chr1_4:10455108-10455127 | Msa0149600:intron | 30.0% | |
| CAAATACTAATCCTACGATT+CGG | + | chr1_4:10455237-10455256 | Msa0149600:CDS | 30.0% | |
| CCTATATATTCAAGAGACTT+GGG | - | chr1_4:10455282-10455301 | None:intergenic | 30.0% | |
| CCAAGTCTCTTGAATATATA+GGG | + | chr1_4:10455280-10455299 | Msa0149600:CDS | 30.0% | |
| AAGTTAGCAAAGAATGGATA+AGG | + | chr1_4:10455313-10455332 | Msa0149600:CDS | 30.0% | |
| ATCTGTATATGAGGATTATG+AGG | + | chr1_4:10455494-10455513 | Msa0149600:intron | 30.0% | |
| TCTGTATATGAGGATTATGA+GGG | + | chr1_4:10455495-10455514 | Msa0149600:intron | 30.0% | |
| !! | TGAAAGTGTTGTTGAAGTTG+AGG | - | chr1_4:10449909-10449928 | None:intergenic | 35.0% |
| CAACTTCAACAACACTTTCA+TGG | + | chr1_4:10449909-10449928 | Msa0149600:five_prime_UTR | 35.0% | |
| AGAGAGGAAGATATGTGAAT+TGG | - | chr1_4:10450033-10450052 | None:intergenic | 35.0% | |
| AAGATGAAGATGAAGAAGAG+AGG | - | chr1_4:10450049-10450068 | None:intergenic | 35.0% | |
| TCTTCTTCATCTTCATCTTC+TGG | + | chr1_4:10450050-10450069 | Msa0149600:CDS | 35.0% | |
| CATTACTCTAAGTGAATGGA+AGG | - | chr1_4:10450115-10450134 | None:intergenic | 35.0% | |
| TTGGCGCTAACAAATATATC+TGG | - | chr1_4:10450430-10450449 | None:intergenic | 35.0% | |
| TCGTCAAAGATTGTTAGCTA+GGG | - | chr1_4:10450865-10450884 | None:intergenic | 35.0% | |
| CAAAAATCCGGAATTCAGTT+TGG | + | chr1_4:10450957-10450976 | Msa0149600:intron | 35.0% | |
| CTAGTCAAAGATTGTTAGCA+AGG | - | chr1_4:10451056-10451075 | None:intergenic | 35.0% | |
| TGAAAATCCGGAATTCAGTT+TGG | - | chr1_4:10451092-10451111 | None:intergenic | 35.0% | |
| ATTAACATTGTGGTTCCTAG+TGG | - | chr1_4:10451123-10451142 | None:intergenic | 35.0% | |
| TTGGAATGTGATTTCCAGTT+AGG | + | chr1_4:10451176-10451195 | Msa0149600:intron | 35.0% | |
| TATGATATCCTTCTCCTAAC+TGG | - | chr1_4:10451193-10451212 | None:intergenic | 35.0% | |
| TTTAAATGTGATGTAGCTGG+AGG | + | chr1_4:10451325-10451344 | Msa0149600:intron | 35.0% | |
| ! | TGCATTTTCATCATCAGCAT+TGG | + | chr1_4:10451441-10451460 | Msa0149600:CDS | 35.0% |
| ! | CCTTGCAATAAATCCTTTTC+CGG | - | chr1_4:10451472-10451491 | None:intergenic | 35.0% |
| GAAAAGGATTTATTGCAAGG+AGG | + | chr1_4:10451472-10451491 | Msa0149600:CDS | 35.0% | |
| !! | GTCACATTTCGGTTTGTTAA+TGG | + | chr1_4:10451800-10451819 | Msa0149600:CDS | 35.0% |
| ATATTGCAACTAGAGAAGCT+TGG | + | chr1_4:10451888-10451907 | Msa0149600:CDS | 35.0% | |
| CTGTATAGTCATCTACTTTG+TGG | - | chr1_4:10452019-10452038 | None:intergenic | 35.0% | |
| CACAAAGTAGATGACTATAC+AGG | + | chr1_4:10452017-10452036 | Msa0149600:CDS | 35.0% | |
| TTGATTATCGTCTAAAGGCA+AGG | - | chr1_4:10452126-10452145 | None:intergenic | 35.0% | |
| AGATCCATTACGTTATTCAC+CGG | + | chr1_4:10452148-10452167 | Msa0149600:CDS | 35.0% | |
| ! | GGAAATGTCAAAAGGTGTAA+AGG | + | chr1_4:10452235-10452254 | Msa0149600:CDS | 35.0% |
| ATTGTGGAGGAGTTTCTATT+TGG | + | chr1_4:10452621-10452640 | Msa0149600:intron | 35.0% | |
| ! | CATTGATAATCGCAAAACTC+AGG | - | chr1_4:10452701-10452720 | None:intergenic | 35.0% |
| ! | CTGAGTTTTGCGATTATCAA+TGG | + | chr1_4:10452699-10452718 | Msa0149600:intron | 35.0% |
| TAGATAGAGTTCATGACACA+AGG | + | chr1_4:10452833-10452852 | Msa0149600:intron | 35.0% | |
| TTGATCTATCCATGAAAAGG+GGG | - | chr1_4:10452966-10452985 | None:intergenic | 35.0% | |
| CTTGATCTATCCATGAAAAG+GGG | - | chr1_4:10452967-10452986 | None:intergenic | 35.0% | |
| GCTTGATCTATCCATGAAAA+GGG | - | chr1_4:10452968-10452987 | None:intergenic | 35.0% | |
| TGCTTGATCTATCCATGAAA+AGG | - | chr1_4:10452969-10452988 | None:intergenic | 35.0% | |
| ! | ATGGGAAACATTGTTTTCTG+TGG | + | chr1_4:10453038-10453057 | Msa0149600:intron | 35.0% |
| TATCATGTGTAACTTCCTCA+CGG | - | chr1_4:10453250-10453269 | None:intergenic | 35.0% | |
| !!! | GGGCAATATTTTTGGAAACT+CGG | + | chr1_4:10453320-10453339 | Msa0149600:intron | 35.0% |
| !! | ATTTTTGGAAACTCGGTATC+CGG | + | chr1_4:10453327-10453346 | Msa0149600:intron | 35.0% |
| CTCTTTCGTGTAGACAATAT+AGG | - | chr1_4:10453364-10453383 | None:intergenic | 35.0% | |
| GAAAAGCTAAGACATAGTCA+AGG | + | chr1_4:10453392-10453411 | Msa0149600:intron | 35.0% | |
| TAAGACATAGTCAAGGTTCT+TGG | + | chr1_4:10453399-10453418 | Msa0149600:intron | 35.0% | |
| ! | TTTGTTGTCTGCATCACTTA+TGG | + | chr1_4:10453496-10453515 | Msa0149600:intron | 35.0% |
| CAAAATGCTCTGTCTTCAAA+AGG | - | chr1_4:10453563-10453582 | None:intergenic | 35.0% | |
| ! | TAGAGTGCTTCCATCATTAA+TGG | + | chr1_4:10453693-10453712 | Msa0149600:intron | 35.0% |
| TCTCTTCACATTTCATAGGT+AGG | + | chr1_4:10453814-10453833 | Msa0149600:intron | 35.0% | |
| GAAATCAATGTCAAGAATGG+TGG | + | chr1_4:10453921-10453940 | Msa0149600:CDS | 35.0% | |
| !! | TTTTTAGTGGTCGATGAACA+AGG | + | chr1_4:10454072-10454091 | Msa0149600:intron | 35.0% |
| CTTGAAATTGCAAAGATGAC+AGG | + | chr1_4:10454160-10454179 | Msa0149600:CDS | 35.0% | |
| ACAGTTTCTTCAATGTATCG+CGG | + | chr1_4:10454226-10454245 | Msa0149600:CDS | 35.0% | |
| ! | TTTTCTGTTATGTTGTGGTC+CGG | + | chr1_4:10454319-10454338 | Msa0149600:intron | 35.0% |
| !!! | ACACCCAGTTTTTTTTTTGG+TGG | - | chr1_4:10454545-10454564 | None:intergenic | 35.0% |
| CATGGTCATAAAAACACTGA+CGG | - | chr1_4:10455089-10455108 | None:intergenic | 35.0% | |
| !! | CAGTGTTTTTATGACCATGT+TGG | + | chr1_4:10455090-10455109 | Msa0149600:intron | 35.0% |
| TATATTCAAGAGACTTGGGT+TGG | - | chr1_4:10455278-10455297 | None:intergenic | 35.0% | |
| CCCAAGTCTCTTGAATATAT+AGG | + | chr1_4:10455279-10455298 | Msa0149600:CDS | 35.0% | |
| CCCTATATATTCAAGAGACT+TGG | - | chr1_4:10455283-10455302 | None:intergenic | 35.0% | |
| AGTCTCTTGAATATATAGGG+AGG | + | chr1_4:10455283-10455302 | Msa0149600:CDS | 35.0% | |
| ! | GTGTTGTTGAAGTTGAGGAA+AGG | - | chr1_4:10449904-10449923 | None:intergenic | 40.0% |
| ! | TATTTGTTAGCGCCAACACT+CGG | + | chr1_4:10450434-10450453 | Msa0149600:intron | 40.0% |
| TAGTTCCACATCGGATAGAT+AGG | + | chr1_4:10450464-10450483 | Msa0149600:intron | 40.0% | |
| AGAATCCTATCTATCCGATG+TGG | - | chr1_4:10450472-10450491 | None:intergenic | 40.0% | |
| CTAACTCATCCCTACAAAAC+CGG | - | chr1_4:10450537-10450556 | None:intergenic | 40.0% | |
| CTCGTCAAAGATTGTTAGCT+AGG | - | chr1_4:10450866-10450885 | None:intergenic | 40.0% | |
| AAATCCGGAATTCAGTTTGG+AGG | + | chr1_4:10450960-10450979 | Msa0149600:intron | 40.0% | |
| CTTACCTCCAAACTGAATTC+CGG | - | chr1_4:10451082-10451101 | None:intergenic | 40.0% | |
| GTTTGGAGGTAAGTAAAGTC+TGG | + | chr1_4:10450974-10450993 | Msa0149600:intron | 40.0% | |
| CTTACCTCCAAACTGAATTC+CGG | + | chr1_4:10451082-10451101 | Msa0149600:intron | 40.0% | |
| AAATCCGGAATTCAGTTTGG+AGG | - | chr1_4:10450960-10450979 | None:intergenic | 40.0% | |
| !! | ATTTTCAGACCGATTCCACT+AGG | + | chr1_4:10451105-10451124 | Msa0149600:intron | 40.0% |
| ATTGTGGTTCCTAGTGGAAT+CGG | - | chr1_4:10451117-10451136 | None:intergenic | 40.0% | |
| TGTGATTTCCAGTTAGGAGA+AGG | + | chr1_4:10451182-10451201 | Msa0149600:intron | 40.0% | |
| GGGTTTAAATGTGATGTAGC+TGG | + | chr1_4:10451322-10451341 | Msa0149600:intron | 40.0% | |
| AAACTTTATTCAACCCCGTG+AGG | + | chr1_4:10451353-10451372 | Msa0149600:CDS | 40.0% | |
| TGAAAGCAAAGACAACCTCA+CGG | - | chr1_4:10451371-10451390 | None:intergenic | 40.0% | |
| CCGGAAAAGGATTTATTGCA+AGG | + | chr1_4:10451469-10451488 | Msa0149600:CDS | 40.0% | |
| AGAATCGCTGTCAAAATCAG+TGG | + | chr1_4:10451585-10451604 | Msa0149600:intron | 40.0% | |
| ! | TAACACGCAGTTACCTTTTG+AGG | + | chr1_4:10451776-10451795 | Msa0149600:CDS | 40.0% |
| !! | CCTTTTGAGGAGTCACATTT+CGG | + | chr1_4:10451789-10451808 | Msa0149600:CDS | 40.0% |
| !!! | TCACCGGCTTCTTTTGTAAA+AGG | + | chr1_4:10452164-10452183 | Msa0149600:CDS | 40.0% |
| ! | GCTCCTTTTACAAAAGAAGC+CGG | - | chr1_4:10452170-10452189 | None:intergenic | 40.0% |
| AGAAGAGGATACAAAGCAAG+TGG | + | chr1_4:10452376-10452395 | Msa0149600:CDS | 40.0% | |
| CTACAACAGCAACTGTATCA+TGG | + | chr1_4:10452446-10452465 | Msa0149600:CDS | 40.0% | |
| TGCTAGAAAATACAGGGGTA+TGG | + | chr1_4:10452523-10452542 | Msa0149600:CDS | 40.0% | |
| ! | GCTAGAAAATACAGGGGTAT+GGG | + | chr1_4:10452524-10452543 | Msa0149600:CDS | 40.0% |
| !! | AGCTTTGGAAGATTTGCTTC+AGG | + | chr1_4:10452550-10452569 | Msa0149600:CDS | 40.0% |
| AAATTCCAGGCAAAACTTGC+AGG | - | chr1_4:10452914-10452933 | None:intergenic | 40.0% | |
| !! | CTGCTTGTTTCTGAAATTCC+AGG | - | chr1_4:10452927-10452946 | None:intergenic | 40.0% |
| !!! | CATGTCGTTTTGGGTGAAAA+GGG | - | chr1_4:10453447-10453466 | None:intergenic | 40.0% |
| !!! | CAACTGTTGCATGTCGTTTT+GGG | - | chr1_4:10453456-10453475 | None:intergenic | 40.0% |
| !! | TCAACTGTTGCATGTCGTTT+TGG | - | chr1_4:10453457-10453476 | None:intergenic | 40.0% |
| TCTGCATCACTTATGGCTTT+AGG | + | chr1_4:10453503-10453522 | Msa0149600:intron | 40.0% | |
| CAAAATGCTCTGTCTTCGAA+AGG | - | chr1_4:10453636-10453655 | None:intergenic | 40.0% | |
| GGATATATAGGTGTTCTCCA+AGG | + | chr1_4:10453835-10453854 | Msa0149600:CDS | 40.0% | |
| ! | ACTGCACATAGGTTGAGAAT+CGG | - | chr1_4:10453891-10453910 | None:intergenic | 40.0% |
| GTACTAAGAAACAACCTCCT+AGG | - | chr1_4:10453992-10454011 | None:intergenic | 40.0% | |
| TAAGTCAGATCCAGAAAGCA+CGG | + | chr1_4:10454098-10454117 | Msa0149600:CDS | 40.0% | |
| AAAGATGACAGGTCTTTCAC+TGG | + | chr1_4:10454171-10454190 | Msa0149600:CDS | 40.0% | |
| AGAAACAATGGGGCATACAT+GGG | - | chr1_4:10454282-10454301 | None:intergenic | 40.0% | |
| AAGAAACAATGGGGCATACA+TGG | - | chr1_4:10454283-10454302 | None:intergenic | 40.0% | |
| TGTTTCATGACAGTCTCTTC+AGG | - | chr1_4:10455162-10455181 | None:intergenic | 40.0% | |
| ACATGATATCCTCCAAAGCT+TGG | + | chr1_4:10455200-10455219 | Msa0149600:CDS | 40.0% | |
| AAGGAGAAGAGTGGTGAAGA+GGG | - | chr1_4:10450004-10450023 | None:intergenic | 45.0% | |
| AAAGGAGAAGAGTGGTGAAG+AGG | - | chr1_4:10450005-10450024 | None:intergenic | 45.0% | |
| TGGTGAAGAAAGGAGAAGAG+TGG | - | chr1_4:10450013-10450032 | None:intergenic | 45.0% | |
| AACTAAATCCCACCGAGTGT+TGG | - | chr1_4:10450449-10450468 | None:intergenic | 45.0% | |
| ! | GGTGGGATTTAGTTCCACAT+CGG | + | chr1_4:10450455-10450474 | Msa0149600:intron | 45.0% |
| ACACTTCTCACCATACAAGC+CGG | + | chr1_4:10450515-10450534 | Msa0149600:intron | 45.0% | |
| !! | ACCATACAAGCCGGTTTTGT+AGG | + | chr1_4:10450524-10450543 | Msa0149600:intron | 45.0% |
| !! | CCATACAAGCCGGTTTTGTA+GGG | + | chr1_4:10450525-10450544 | Msa0149600:intron | 45.0% |
| !! | CGGTTTTGTAGGGATGAGTT+AGG | + | chr1_4:10450535-10450554 | Msa0149600:intron | 45.0% |
| TGTTAGCTAGGGTCTGAACT+CGG | - | chr1_4:10450854-10450873 | None:intergenic | 45.0% | |
| !! | ATTTTCAGACCGATTCCACC+AGG | - | chr1_4:10450929-10450948 | None:intergenic | 45.0% |
| GTGGAATCGGTCTGAAAATC+CGG | + | chr1_4:10450930-10450949 | Msa0149600:intron | 45.0% | |
| TGTTAGCAAGGGTCTGAACT+CGG | - | chr1_4:10451044-10451063 | None:intergenic | 45.0% | |
| GTGGAATCGGTCTGAAAATC+CGG | - | chr1_4:10450930-10450949 | None:intergenic | 45.0% | |
| GCTTCTTAGTGTGTGTGTCT+TGG | + | chr1_4:10451157-10451176 | Msa0149600:intron | 45.0% | |
| AAAGCAAAGACAACCTCACG+GGG | - | chr1_4:10451369-10451388 | None:intergenic | 45.0% | |
| GAAAGCAAAGACAACCTCAC+GGG | - | chr1_4:10451370-10451389 | None:intergenic | 45.0% | |
| ! | ATCATCAGCATTGGAAGCTC+CGG | + | chr1_4:10451450-10451469 | Msa0149600:CDS | 45.0% |
| GCAAGGAGGAGAACTAACAA+AGG | + | chr1_4:10451486-10451505 | Msa0149600:CDS | 45.0% | |
| CCGAAATGTGACTCCTCAAA+AGG | - | chr1_4:10451792-10451811 | None:intergenic | 45.0% | |
| CAGTGCTTCAGAATCAGCAA+AGG | - | chr1_4:10451850-10451869 | None:intergenic | 45.0% | |
| !! | TTGCTGATTCTGAAGCACTG+AGG | + | chr1_4:10451850-10451869 | Msa0149600:CDS | 45.0% |
| !! | TGATTCTGAAGCACTGAGGT+TGG | + | chr1_4:10451854-10451873 | Msa0149600:CDS | 45.0% |
| AGTGCAGTTCGATATGCATG+AGG | - | chr1_4:10451958-10451977 | None:intergenic | 45.0% | |
| TTTCCATAGCACCTTCCTCT+CGG | + | chr1_4:10452099-10452118 | Msa0149600:CDS | 45.0% | |
| GAAGCCGGTGAATAACGTAA+TGG | - | chr1_4:10452155-10452174 | None:intergenic | 45.0% | |
| AAAGAGCGGTGATTGCTCAA+AGG | + | chr1_4:10452207-10452226 | Msa0149600:CDS | 45.0% | |
| AAGAGCGGTGATTGCTCAAA+GGG | + | chr1_4:10452208-10452227 | Msa0149600:CDS | 45.0% | |
| AGGGAGGTGGAAATGTCAAA+AGG | + | chr1_4:10452227-10452246 | Msa0149600:CDS | 45.0% | |
| AAGTGGTAAGCTTGAGTAGC+TGG | + | chr1_4:10452393-10452412 | Msa0149600:CDS | 45.0% | |
| AGTGGTAAGCTTGAGTAGCT+GGG | + | chr1_4:10452394-10452413 | Msa0149600:CDS | 45.0% | |
| !! | AGCATCTGGAGTTGATGAGA+AGG | + | chr1_4:10452421-10452440 | Msa0149600:CDS | 45.0% |
| !! | GCTTGTTTTCCCCCTTTTCA+TGG | + | chr1_4:10452954-10452973 | Msa0149600:intron | 45.0% |
| GAAGAAAATGATCATCGGCG+TGG | + | chr1_4:10453117-10453136 | Msa0149600:intron | 45.0% | |
| !!! | GCATGTCGTTTTGGGTGAAA+AGG | - | chr1_4:10453448-10453467 | None:intergenic | 45.0% |
| GAGCGATTTGACAGTACAAG+AGG | + | chr1_4:10453862-10453881 | Msa0149600:CDS | 45.0% | |
| TCTCAACCTATGTGCAGTAC+TGG | + | chr1_4:10453893-10453912 | Msa0149600:CDS | 45.0% | |
| CCTTATCCAGTACTGCACAT+AGG | - | chr1_4:10453902-10453921 | None:intergenic | 45.0% | |
| ! | CCTATGTGCAGTACTGGATA+AGG | + | chr1_4:10453899-10453918 | Msa0149600:CDS | 45.0% |
| ATGGTGGCAAAATATGCTCG+AGG | + | chr1_4:10453937-10453956 | Msa0149600:CDS | 45.0% | |
| TAGGCAAACGAGGAACATAC+GGG | - | chr1_4:10453973-10453992 | None:intergenic | 45.0% | |
| CTAGGCAAACGAGGAACATA+CGG | - | chr1_4:10453974-10453993 | None:intergenic | 45.0% | |
| ! | GTATCGCGGCATTGAATACA+TGG | + | chr1_4:10454240-10454259 | Msa0149600:CDS | 45.0% |
| CTACTCATGAAACTACGTCG+AGG | - | chr1_4:10454719-10454738 | None:intergenic | 45.0% | |
| GGACTCTCTATCGACAAATC+AGG | - | chr1_4:10455141-10455160 | None:intergenic | 45.0% | |
| !! | TGGGTTGGTGATCATCAGTA+AGG | - | chr1_4:10455263-10455282 | None:intergenic | 45.0% |
| CAAGGGAGATGAAGAACTGG+TGG | + | chr1_4:10449822-10449841 | Msa0149600:five_prime_UTR | 50.0% | |
| !! | CCCTACAAAACCGGCTTGTA+TGG | - | chr1_4:10450528-10450547 | None:intergenic | 50.0% |
| CACTAGCAAGGGTCTGAACT+CGG | - | chr1_4:10450903-10450922 | None:intergenic | 50.0% | |
| CTAGTGGTTCCTGGTGGAAT+CGG | + | chr1_4:10450917-10450936 | Msa0149600:intron | 50.0% | |
| ! | AGCATTGGAAGCTCCGGAAA+AGG | + | chr1_4:10451456-10451475 | Msa0149600:CDS | 50.0% |
| ! | CAGGGGTATGGGAATAGCTT+TGG | + | chr1_4:10452535-10452554 | Msa0149600:CDS | 50.0% |
| TGTCAAATCGCTCTGCTCCT+TGG | - | chr1_4:10453855-10453874 | None:intergenic | 50.0% | |
| CGTATGTTCCTCGTTTGCCT+AGG | + | chr1_4:10453972-10453991 | Msa0149600:intron | 50.0% | |
| ATGTTCCTCGTTTGCCTAGG+AGG | + | chr1_4:10453975-10453994 | Msa0149600:intron | 50.0% | |
| AACAACCTCCTAGGCAAACG+AGG | - | chr1_4:10453983-10454002 | None:intergenic | 50.0% | |
| ! | TCAGATCCAGAAAGCACGGA+AGG | + | chr1_4:10454102-10454121 | Msa0149600:CDS | 50.0% |
| TCAAGACCTTCCGTGCTTTC+TGG | - | chr1_4:10454111-10454130 | None:intergenic | 50.0% | |
| TTTCCCTCGAGTCCAAGCTT+TGG | - | chr1_4:10455215-10455234 | None:intergenic | 50.0% | |
| AAAGCTTGGACTCGAGGGAA+AGG | + | chr1_4:10455214-10455233 | Msa0149600:CDS | 50.0% | |
| CATCAGTAAGGCCGAATCGT+AGG | - | chr1_4:10455251-10455270 | None:intergenic | 50.0% | |
| GGGAGATGAAGAACTGGTGG+TGG | + | chr1_4:10449825-10449844 | Msa0149600:five_prime_UTR | 55.0% | |
| TTGTTAGCGCCAACACTCGG+TGG | + | chr1_4:10450437-10450456 | Msa0149600:intron | 55.0% | |
| TGTTAGCGCCAACACTCGGT+GGG | + | chr1_4:10450438-10450457 | Msa0149600:intron | 55.0% | |
| AGCAAGGGTCTGAACTCGGA+TGG | - | chr1_4:10450899-10450918 | None:intergenic | 55.0% | |
| CGAGTTCAGACCCTTGCTAG+TGG | + | chr1_4:10450901-10450920 | Msa0149600:intron | 55.0% | |
| AGACCCTTGCTAGTGGTTCC+TGG | + | chr1_4:10450908-10450927 | Msa0149600:intron | 55.0% | |
| CCACCAGGAACCACTAGCAA+GGG | - | chr1_4:10450914-10450933 | None:intergenic | 55.0% | |
| TCCACCAGGAACCACTAGCA+AGG | - | chr1_4:10450915-10450934 | None:intergenic | 55.0% | |
| AAAGGCAAGGACCGAGAGGA+AGG | - | chr1_4:10452113-10452132 | None:intergenic | 55.0% | |
| GTCTAAAGGCAAGGACCGAG+AGG | - | chr1_4:10452117-10452136 | None:intergenic | 55.0% | |
| AGCGGTGATTGCTCAAAGGG+AGG | + | chr1_4:10452211-10452230 | Msa0149600:CDS | 55.0% | |
| GGTGATTGCTCAAAGGGAGG+TGG | + | chr1_4:10452214-10452233 | Msa0149600:CDS | 55.0% | |
| !! | AGTAGCTGGGCAGAAGCATC+TGG | + | chr1_4:10452407-10452426 | Msa0149600:CDS | 55.0% |
| ! | GTGCACCTGCAAGTTTTGCC+TGG | + | chr1_4:10452906-10452925 | Msa0149600:intron | 55.0% |
| CTGTTATGTTGTGGTCCGGC+TGG | + | chr1_4:10454323-10454342 | Msa0149600:intron | 55.0% | |
| TCCTCCAAAGCTTGGACTCG+AGG | + | chr1_4:10455208-10455227 | Msa0149600:CDS | 55.0% | |
| CCTCCAAAGCTTGGACTCGA+GGG | + | chr1_4:10455209-10455228 | Msa0149600:CDS | 55.0% | |
| CCCTTGCTAGTGGTTCCTGG+TGG | + | chr1_4:10450911-10450930 | Msa0149600:intron | 60.0% | |
| !! | GGACCGAGAGGAAGGTGCTA+TGG | - | chr1_4:10452105-10452124 | None:intergenic | 60.0% |
| AACATGAGGTTGGGGCCGTG+AGG | + | chr1_4:10453232-10453251 | Msa0149600:intron | 60.0% | |
| ! | CCCTCGAGTCCAAGCTTTGG+AGG | - | chr1_4:10455212-10455231 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 10449821 | 10455622 | 10449821 | ID=Msa0149600;Name=Msa0149600 |
| chr1_4 | mRNA | 10449821 | 10455622 | 10449821 | ID=Msa0149600-mRNA-1;Parent=Msa0149600;Name=Msa0149600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=127|1|1|1|0.85|0.75|8|173|552 |
| chr1_4 | exon | 10449821 | 10450071 | 10449821 | ID=Msa0149600-mRNA-1:exon:4427;Parent=Msa0149600-mRNA-1 |
| chr1_4 | exon | 10451341 | 10451507 | 10451341 | ID=Msa0149600-mRNA-1:exon:4428;Parent=Msa0149600-mRNA-1 |
| chr1_4 | exon | 10451729 | 10452256 | 10451729 | ID=Msa0149600-mRNA-1:exon:4429;Parent=Msa0149600-mRNA-1 |
| chr1_4 | exon | 10452341 | 10452571 | 10452341 | ID=Msa0149600-mRNA-1:exon:4430;Parent=Msa0149600-mRNA-1 |
| chr1_4 | exon | 10453832 | 10453972 | 10453832 | ID=Msa0149600-mRNA-1:exon:4431;Parent=Msa0149600-mRNA-1 |
| chr1_4 | exon | 10454079 | 10454261 | 10454079 | ID=Msa0149600-mRNA-1:exon:4432;Parent=Msa0149600-mRNA-1 |
| chr1_4 | exon | 10455129 | 10455470 | 10455129 | ID=Msa0149600-mRNA-1:exon:4433;Parent=Msa0149600-mRNA-1 |
| chr1_4 | exon | 10455507 | 10455622 | 10455507 | ID=Msa0149600-mRNA-1:exon:4434;Parent=Msa0149600-mRNA-1 |
| chr1_4 | five_prime_UTR | 10449821 | 10449947 | 10449821 | ID=Msa0149600-mRNA-1:five_prime_utr;Parent=Msa0149600-mRNA-1 |
| chr1_4 | CDS | 10449948 | 10450071 | 10449948 | ID=Msa0149600-mRNA-1:cds;Parent=Msa0149600-mRNA-1 |
| chr1_4 | CDS | 10451341 | 10451507 | 10451341 | ID=Msa0149600-mRNA-1:cds;Parent=Msa0149600-mRNA-1 |
| chr1_4 | CDS | 10451729 | 10452256 | 10451729 | ID=Msa0149600-mRNA-1:cds;Parent=Msa0149600-mRNA-1 |
| chr1_4 | CDS | 10452341 | 10452571 | 10452341 | ID=Msa0149600-mRNA-1:cds;Parent=Msa0149600-mRNA-1 |
| chr1_4 | CDS | 10453832 | 10453972 | 10453832 | ID=Msa0149600-mRNA-1:cds;Parent=Msa0149600-mRNA-1 |
| chr1_4 | CDS | 10454079 | 10454261 | 10454079 | ID=Msa0149600-mRNA-1:cds;Parent=Msa0149600-mRNA-1 |
| chr1_4 | CDS | 10455129 | 10455413 | 10455129 | ID=Msa0149600-mRNA-1:cds;Parent=Msa0149600-mRNA-1 |
| chr1_4 | three_prime_UTR | 10455414 | 10455470 | 10455414 | ID=Msa0149600-mRNA-1:three_prime_utr;Parent=Msa0149600-mRNA-1 |
| chr1_4 | three_prime_UTR | 10455507 | 10455622 | 10455507 | ID=Msa0149600-mRNA-1:three_prime_utr;Parent=Msa0149600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
