Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149820 | sp|P52423|PUR3_VIGUN | 75.884 | 311 | 72 | 3 | 1 | 309 | 1 | 310 | 1.47e-164 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149820 | G7I264 | 89.032 | 310 | 28 | 1 | 1 | 310 | 1 | 304 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082440 | Msa0149820 | 0.800787 | 1.223165e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149820 | MtrunA17_Chr1g0146321 | 89.032 | 310 | 28 | 1 | 1 | 310 | 1 | 304 | 0.0 | 514 |
| Msa0149820 | MtrunA17_Chr7g0220151 | 25.604 | 207 | 141 | 3 | 89 | 292 | 118 | 314 | 4.26e-15 | 74.7 |
| Msa0149820 | MtrunA17_Chr5g0399371 | 26.087 | 207 | 140 | 3 | 89 | 292 | 143 | 339 | 2.75e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149820 | AT1G31220.1 | 73.272 | 217 | 57 | 1 | 96 | 311 | 76 | 292 | 7.90e-115 | 333 |
| Msa0149820 | AT5G47435.1 | 24.155 | 207 | 144 | 4 | 89 | 292 | 117 | 313 | 8.14e-14 | 71.2 |
| Msa0149820 | AT5G47435.2 | 24.155 | 207 | 144 | 4 | 89 | 292 | 117 | 313 | 8.14e-14 | 71.2 |
| Msa0149820 | AT4G17360.1 | 23.671 | 207 | 145 | 3 | 89 | 292 | 122 | 318 | 2.05e-13 | 70.1 |
Find 115 sgRNAs with CRISPR-Local
Find 423 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCACTTCTTCCAGCTTT+TGG | 0.109676 | 1_4:-10675501 | Msa0149820:CDS |
| GAAATTCAACATATTGTTTC+TGG | 0.142749 | 1_4:-10677858 | Msa0149820:CDS |
| TTGAATTTCCATGGAAATTT+TGG | 0.184128 | 1_4:+10677872 | None:intergenic |
| GCCAAGAGAGACAGGGATTT+TGG | 0.199693 | 1_4:+10680511 | None:intergenic |
| CGGTGAAAATGTTGAGGTTA+TGG | 0.286155 | 1_4:+10677924 | None:intergenic |
| AAGACGGATGCTATAATTAT+AGG | 0.292239 | 1_4:-10677677 | Msa0149820:CDS |
| CAACCACCTCAACATATAAT+TGG | 0.306434 | 1_4:+10675004 | None:intergenic |
| GATTGCCATTTGCTACTCTA+TGG | 0.330502 | 1_4:+10674446 | None:intergenic |
| ATAAATCAGTAAGTTTCATT+AGG | 0.337746 | 1_4:+10674913 | None:intergenic |
| GACTTCAGTCACTTTCTCTA+AGG | 0.338469 | 1_4:+10674375 | None:intergenic |
| GGATGTTAAATATAGATCTT+TGG | 0.341940 | 1_4:+10675526 | None:intergenic |
| CAATTATGTGAATGGATAGA+AGG | 0.353928 | 1_4:+10677744 | None:intergenic |
| ACTCTTGCAGCCAACTCTTC+TGG | 0.360371 | 1_4:+10675238 | None:intergenic |
| CGATTTCTTAGCTACTTATT+CGG | 0.370114 | 1_4:+10674709 | None:intergenic |
| GAAGGTGTGGATGATAGTTT+TGG | 0.380691 | 1_4:+10677828 | None:intergenic |
| TCCACACCTTCAAATTCAAT+TGG | 0.381707 | 1_4:-10677816 | Msa0149820:CDS |
| GCGGAGTATGCAAGACAAAA+TGG | 0.394486 | 1_4:-10675914 | Msa0149820:CDS |
| TTCTTTACCCTATCAGCATT+GGG | 0.396658 | 1_4:-10677704 | Msa0149820:CDS |
| GCCAAAATCCCTGTCTCTCT+TGG | 0.403750 | 1_4:-10680512 | Msa0149820:five_prime_UTR |
| AAAGCGTTGTTAAGGACTTA+AGG | 0.405733 | 1_4:-10680423 | Msa0149820:intron |
| TATGTGAAGACCGTATAGTT+TGG | 0.406325 | 1_4:-10674975 | Msa0149820:CDS |
| GGTGAAAATGTTGAGGTTAT+GGG | 0.410379 | 1_4:+10677925 | None:intergenic |
| CACAAAGCAGTAATTGCTTC+CGG | 0.411458 | 1_4:-10675450 | Msa0149820:CDS |
| AACAATATGTTGAATTTCCA+TGG | 0.420418 | 1_4:+10677863 | None:intergenic |
| GTCGATGAGCACTATGACAC+AGG | 0.428544 | 1_4:-10675307 | Msa0149820:CDS |
| TCATCGACAAAATGAATTGT+AGG | 0.429485 | 1_4:+10675322 | None:intergenic |
| TCATGGAGATGTTGTTGTAT+TGG | 0.431119 | 1_4:-10677493 | Msa0149820:CDS |
| TATGAAGAAGAAAGTAAAGA+AGG | 0.433616 | 1_4:+10677768 | None:intergenic |
| GTCTGTAGAAAGCGTTGTTA+AGG | 0.435266 | 1_4:-10680431 | Msa0149820:five_prime_UTR |
| AGAGCGGCAAACGGCGGCGG+AGG | 0.444275 | 1_4:+10680471 | None:intergenic |
| GAGGTGAAAGCTCCGGTCAC+GGG | 0.445415 | 1_4:-10677600 | Msa0149820:CDS |
| GCTTTGGGGAACACTATAAC+CGG | 0.445993 | 1_4:+10675887 | None:intergenic |
| TCTTAACAGCTACAAATTGA+TGG | 0.446700 | 1_4:-10678013 | Msa0149820:intron |
| ATAATTATAGGAAGAGAGTA+TGG | 0.448650 | 1_4:-10677665 | Msa0149820:CDS |
| AAAGCAAAAGATGGATATGA+TGG | 0.449881 | 1_4:-10675869 | Msa0149820:CDS |
| GATCTGTTGCCAAGAGAGAC+AGG | 0.456614 | 1_4:+10680503 | None:intergenic |
| CATCTTTCCTCCAAACTATA+CGG | 0.459674 | 1_4:+10674965 | None:intergenic |
| AAGCCCTTGCCTCCAAAAGC+TGG | 0.466123 | 1_4:+10675489 | None:intergenic |
| GTGAGAGCGGCAAACGGCGG+CGG | 0.469572 | 1_4:+10680468 | None:intergenic |
| GTTCTTTACCCTATCAGCAT+TGG | 0.471780 | 1_4:-10677705 | Msa0149820:CDS |
| TATTCACGAGGCATCCAAAA+GGG | 0.471804 | 1_4:-10677523 | Msa0149820:CDS |
| GAACATCACAATTATGTGAA+TGG | 0.471962 | 1_4:+10677736 | None:intergenic |
| ATTATATGTTGAGGTGGTTG+AGG | 0.489898 | 1_4:-10675001 | Msa0149820:CDS |
| CAAACGGCGGCGGAGGAGAA+CGG | 0.492330 | 1_4:+10680478 | None:intergenic |
| ATATAGATCTTTGGTAAGCT+CGG | 0.496029 | 1_4:+10675535 | None:intergenic |
| TATGATAATGCACATGGGAG+GGG | 0.503868 | 1_4:+10674417 | None:intergenic |
| TTATCATACTGCACAAGTAT+TGG | 0.503902 | 1_4:-10674402 | Msa0149820:three_prime_UTR |
| CTATTCACGAGGCATCCAAA+AGG | 0.507256 | 1_4:-10677524 | Msa0149820:CDS |
| CGTATAGTTTGGAGGAAAGA+TGG | 0.508730 | 1_4:-10674964 | Msa0149820:CDS |
| GCTGTGTTTGTGTCGGGTGG+AGG | 0.514378 | 1_4:-10677561 | Msa0149820:CDS |
| AAGCTGGCTGTGTTTGTGTC+GGG | 0.518625 | 1_4:-10677567 | Msa0149820:CDS |
| TCCAATTGAATTTGAAGGTG+TGG | 0.525302 | 1_4:+10677815 | None:intergenic |
| GGTGAATCATTAGTAAGCAC+AGG | 0.525975 | 1_4:+10675259 | None:intergenic |
| TGCAAGACAAAATGGTATAC+CGG | 0.527260 | 1_4:-10675906 | Msa0149820:CDS |
| TAATGATTCACCAGAAGAGT+TGG | 0.527362 | 1_4:-10675248 | Msa0149820:CDS |
| CTCATATTGCAAAAGTATTG+TGG | 0.529847 | 1_4:-10674309 | Msa0149820:three_prime_UTR |
| ATGAAGAAGAAAGTAAAGAA+GGG | 0.531104 | 1_4:+10677769 | None:intergenic |
| TTATTACACCAAAATTTCCA+TGG | 0.532122 | 1_4:-10677880 | Msa0149820:exon |
| GTGTTCCCCAAAGCAAAAGA+TGG | 0.533133 | 1_4:-10675878 | Msa0149820:CDS |
| TCTCTCCATAGAGTAGCAAA+TGG | 0.538003 | 1_4:-10674451 | Msa0149820:three_prime_UTR |
| TTGCGAGTGAGAGCGGCAAA+CGG | 0.538714 | 1_4:+10680462 | None:intergenic |
| CAGTAATTGCTTCCGGCGCA+AGG | 0.539325 | 1_4:-10675443 | Msa0149820:intron |
| CCAAAAGCTGGAAGAAGTGA+TGG | 0.542193 | 1_4:+10675501 | None:intergenic |
| GTGAAGACCGTATAGTTTGG+AGG | 0.542786 | 1_4:-10674972 | Msa0149820:CDS |
| TGAGAATGCACAAGTGGAAG+GGG | 0.544486 | 1_4:+10674328 | None:intergenic |
| AAGCTCCGGTCACGGGGAGA+AGG | 0.544910 | 1_4:-10677593 | Msa0149820:CDS |
| AAAGCTGGCTGTGTTTGTGT+CGG | 0.548349 | 1_4:-10677568 | Msa0149820:CDS |
| TATGAGAATGCACAAGTGGA+AGG | 0.550010 | 1_4:+10674326 | None:intergenic |
| ATGATAATGCACATGGGAGG+GGG | 0.553022 | 1_4:+10674418 | None:intergenic |
| TGAGGTGAAAGCTCCGGTCA+CGG | 0.555535 | 1_4:-10677601 | Msa0149820:CDS |
| CTTAACAGCTACAAATTGAT+GGG | 0.558879 | 1_4:-10678012 | Msa0149820:intron |
| AGATTTCAGCAAGGAGCTTG+AGG | 0.561786 | 1_4:-10677619 | Msa0149820:CDS |
| ATCATTAAAAGTCGTTGCAT+AGG | 0.562722 | 1_4:+10674271 | None:intergenic |
| GGAGCTTGAGGTGAAAGCTC+CGG | 0.562901 | 1_4:-10677607 | Msa0149820:CDS |
| ATGAGAATGCACAAGTGGAA+GGG | 0.570931 | 1_4:+10674327 | None:intergenic |
| AATTATGTGAATGGATAGAA+GGG | 0.575573 | 1_4:+10677745 | None:intergenic |
| GAGAGAAATGTACCTTGCGC+CGG | 0.578297 | 1_4:+10675431 | None:intergenic |
| TTCAGTCACTTTCTCTAAGG+AGG | 0.579543 | 1_4:+10674378 | None:intergenic |
| TTTGTAAGTATAAGCAATGG+TGG | 0.579841 | 1_4:+10677955 | None:intergenic |
| CATAATTGTGATGTTCCAAG+TGG | 0.581533 | 1_4:-10677729 | Msa0149820:CDS |
| ATGACCTTGTCGATACACTA+AGG | 0.584118 | 1_4:-10675835 | Msa0149820:intron |
| ACGAGAGTTGCGAGTGAGAG+CGG | 0.584694 | 1_4:+10680455 | None:intergenic |
| GGAACACCAATTATATGTTG+AGG | 0.585512 | 1_4:-10675010 | Msa0149820:CDS |
| ATGGTGGCAGCAACTTTCAA+AGG | 0.589530 | 1_4:+10677971 | None:intergenic |
| GCAATATGAGAATGCACAAG+TGG | 0.590431 | 1_4:+10674322 | None:intergenic |
| GTATGATAATGCACATGGGA+GGG | 0.600156 | 1_4:+10674416 | None:intergenic |
| CTGGCTGTGTTTGTGTCGGG+TGG | 0.604899 | 1_4:-10677564 | Msa0149820:CDS |
| AAGTGACTGAAGTCTTTCCA+TGG | 0.607572 | 1_4:-10674366 | Msa0149820:three_prime_UTR |
| TAAGCTCGGATCAGTTCCGC+TGG | 0.608587 | 1_4:+10675549 | None:intergenic |
| CAGGGACAACACGCTGAGCA+AGG | 0.611137 | 1_4:+10675278 | None:intergenic |
| CAGATTTCAGAGCAAACTTG+TGG | 0.611346 | 1_4:+10674742 | None:intergenic |
| AGGTGAAAGCTCCGGTCACG+GGG | 0.615479 | 1_4:-10677599 | Msa0149820:CDS |
| ATAGGGTAAAGAACTCCACT+TGG | 0.620291 | 1_4:+10677714 | None:intergenic |
| GTTCCGCTGGTATAAGCTTG+AGG | 0.620611 | 1_4:+10675562 | None:intergenic |
| ACACCAATTATATGTTGAGG+TGG | 0.626319 | 1_4:-10675007 | Msa0149820:CDS |
| AGTATGATAATGCACATGGG+AGG | 0.630376 | 1_4:+10674415 | None:intergenic |
| AGAGTAGCAAATGGCAATCG+TGG | 0.630870 | 1_4:-10674442 | Msa0149820:three_prime_UTR |
| ATTCACGAGGCATCCAAAAG+GGG | 0.632711 | 1_4:-10677522 | Msa0149820:CDS |
| GGATCAAAATTGCTACACCA+TGG | 0.640856 | 1_4:+10674349 | None:intergenic |
| CGAGTGAGAGCGGCAAACGG+CGG | 0.641893 | 1_4:+10680465 | None:intergenic |
| AAGCTGGAAGAAGTGATGGA+TGG | 0.645684 | 1_4:+10675505 | None:intergenic |
| TGACGGCGGTGAAAATGTTG+AGG | 0.650932 | 1_4:+10677918 | None:intergenic |
| ATCTGTTGCCAAGAGAGACA+GGG | 0.657888 | 1_4:+10680504 | None:intergenic |
| GGCTGCAAGAGTTCTAAGAG+AGG | 0.658801 | 1_4:-10675227 | Msa0149820:intron |
| TTCACGAGGCATCCAAAAGG+GGG | 0.659465 | 1_4:-10677521 | Msa0149820:CDS |
| GTGCAGTATGATAATGCACA+TGG | 0.667552 | 1_4:+10674411 | None:intergenic |
| AAACTTTAAATCTATTCACG+AGG | 0.669583 | 1_4:-10677535 | Msa0149820:CDS |
| TGATGTTGCAGATTTCAGCA+AGG | 0.672124 | 1_4:-10677628 | Msa0149820:CDS |
| ACGGCGGCGGAGGAGAACGG+TGG | 0.672940 | 1_4:+10680481 | None:intergenic |
| TCGATGAGCACTATGACACA+GGG | 0.677693 | 1_4:-10675306 | Msa0149820:CDS |
| CTGACCTTAGTGTATCGACA+AGG | 0.683614 | 1_4:+10675831 | None:intergenic |
| GTGAATCATTAGTAAGCACA+GGG | 0.687483 | 1_4:+10675260 | None:intergenic |
| GTATTGGTCACGAATAAAAG+CGG | 0.691817 | 1_4:-10677477 | Msa0149820:intron |
| ATACCTCAAGCTTATACCAG+CGG | 0.718952 | 1_4:-10675565 | Msa0149820:CDS |
| TGCAGTATGATAATGCACAT+GGG | 0.753581 | 1_4:+10674412 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAAAAAAAAAAAAAA+GGG | - | chr1_4:10675563-10675582 | Msa0149820:CDS | 0.0% |
| !! | ACTCAAAAAAAAAAAAAAAA+AGG | + | chr1_4:10674848-10674867 | None:intergenic | 10.0% |
| !!! | TCATTTTTATTTTTAATCAT+AGG | - | chr1_4:10676633-10676652 | Msa0149820:intron | 10.0% |
| !! | TAAAATAAAAAGAAAGAAAA+AGG | + | chr1_4:10678886-10678905 | None:intergenic | 10.0% |
| !! | TGTTGTTAAAATAATTAAAA+GGG | + | chr1_4:10679989-10680008 | None:intergenic | 10.0% |
| !! | GATTGAATCAAAATAATTTA+TGG | - | chr1_4:10674489-10674508 | Msa0149820:intron | 15.0% |
| !!! | ATTCTTTCTAAAATGAAATA+AGG | + | chr1_4:10675318-10675337 | None:intergenic | 15.0% |
| !!! | TAAATGGATTTTTTTAAAAC+CGG | + | chr1_4:10675685-10675704 | None:intergenic | 15.0% |
| !!! | ATTCATGCAATTTTATATTA+TGG | - | chr1_4:10675896-10675915 | Msa0149820:CDS | 15.0% |
| !!! | TTTTTCAAAATTGAAATTCT+GGG | + | chr1_4:10676711-10676730 | None:intergenic | 15.0% |
| !!! | TTTTTTCAAAATTGAAATTC+TGG | + | chr1_4:10676712-10676731 | None:intergenic | 15.0% |
| !!! | AAAAAAAAATTTGTTGTTGA+CGG | + | chr1_4:10676952-10676971 | None:intergenic | 15.0% |
| !!! | TTTTCTTCAATTTTAATTGA+TGG | - | chr1_4:10677537-10677556 | Msa0149820:CDS | 15.0% |
| !! | AATTAGTTGTTAAGTTATAT+TGG | - | chr1_4:10678434-10678453 | Msa0149820:intron | 15.0% |
| !! | ATTAGTTGTTAAGTTATATT+GGG | - | chr1_4:10678435-10678454 | Msa0149820:intron | 15.0% |
| !!! | TTATACATGTATTTTAAAGA+AGG | - | chr1_4:10678763-10678782 | Msa0149820:intron | 15.0% |
| !!! | GTGTTGTTAAAATAATTAAA+AGG | + | chr1_4:10679990-10680009 | None:intergenic | 15.0% |
| !! | ATTCTGAATTGAATAAACAA+AGG | + | chr1_4:10674542-10674561 | None:intergenic | 20.0% |
| !! | GTTATTATTATGCAATTCAA+TGG | - | chr1_4:10674631-10674650 | Msa0149820:intron | 20.0% |
| !!! | TTTTATTCTTGTCTTATGTA+AGG | - | chr1_4:10675152-10675171 | Msa0149820:intron | 20.0% |
| !!! | AAAAGTCTTCATTTTTTTAC+TGG | + | chr1_4:10675219-10675238 | None:intergenic | 20.0% |
| !! | GAGTTTAGCAATATTATTTA+TGG | + | chr1_4:10675259-10675278 | None:intergenic | 20.0% |
| !! | AATAAAATACAAACTGAGAT+AGG | + | chr1_4:10675375-10675394 | None:intergenic | 20.0% |
| !!! | TATCTCAGTTTGTATTTTAT+TGG | - | chr1_4:10675374-10675393 | Msa0149820:intron | 20.0% |
| !!! | ATCTCAGTTTGTATTTTATT+GGG | - | chr1_4:10675375-10675394 | Msa0149820:intron | 20.0% |
| !!! | ATAATCATTTTTTTACGCAA+CGG | - | chr1_4:10675525-10675544 | Msa0149820:CDS | 20.0% |
| !! | AAAAAAAAAAAAAAGGGTTC+AGG | - | chr1_4:10675569-10675588 | Msa0149820:CDS | 20.0% |
| !! | AACTACTTTCACAAAATAAA+TGG | + | chr1_4:10675701-10675720 | None:intergenic | 20.0% |
| !! | ATGAACAACAATATATAGTA+GGG | + | chr1_4:10676027-10676046 | None:intergenic | 20.0% |
| !! | TATGAACAACAATATATAGT+AGG | + | chr1_4:10676028-10676047 | None:intergenic | 20.0% |
| !! | AAACGGAAATTTGATTAAAA+AGG | + | chr1_4:10676359-10676378 | None:intergenic | 20.0% |
| !! | ATAGTTAACTCAAAATTTGA+CGG | - | chr1_4:10676449-10676468 | Msa0149820:intron | 20.0% |
| !!! | ATGTTTAAAAAGTTTCAAGT+AGG | + | chr1_4:10676513-10676532 | None:intergenic | 20.0% |
| !!! | ACTTGAAACTTTTTAAACAT+AGG | - | chr1_4:10676513-10676532 | Msa0149820:intron | 20.0% |
| !!! | CTTGAAACTTTTTAAACATA+GGG | - | chr1_4:10676514-10676533 | Msa0149820:intron | 20.0% |
| !!! | TTGAAACTTTTTAAACATAG+GGG | - | chr1_4:10676515-10676534 | Msa0149820:intron | 20.0% |
| !! | TAAGTATATATGTCATGTAT+AGG | - | chr1_4:10676604-10676623 | Msa0149820:intron | 20.0% |
| !!! | AAAAGAAGTATTCTTGTTAT+CGG | - | chr1_4:10676728-10676747 | Msa0149820:intron | 20.0% |
| !!! | TTTTTTGTAAGTATAAGCAA+TGG | + | chr1_4:10676901-10676920 | None:intergenic | 20.0% |
| !!! | TTACTATAATCATTTAGCTT+AGG | - | chr1_4:10677469-10677488 | Msa0149820:intron | 20.0% |
| !! | ATTAAGCTATGTTGTTAATA+AGG | - | chr1_4:10677570-10677589 | Msa0149820:CDS | 20.0% |
| !! | TTTCCAATATTCAATATCAA+AGG | + | chr1_4:10677714-10677733 | None:intergenic | 20.0% |
| !! | TCAAAACACACAAAATTAAA+CGG | + | chr1_4:10678551-10678570 | None:intergenic | 20.0% |
| !!! | TTGTTTTGATTTTCAAATTC+AGG | - | chr1_4:10679819-10679838 | Msa0149820:intron | 20.0% |
| !! | ATAAATCAGTAAGTTTCATT+AGG | + | chr1_4:10679940-10679959 | None:intergenic | 20.0% |
| !!! | TTACTGATTTATCACTTTTA+TGG | - | chr1_4:10679948-10679967 | Msa0149820:intron | 20.0% |
| !! | TTCCTACTTATATTCTTAAA+GGG | + | chr1_4:10680199-10680218 | None:intergenic | 20.0% |
| !! | TTTCCTACTTATATTCTTAA+AGG | + | chr1_4:10680200-10680219 | None:intergenic | 20.0% |
| ! | AGGAGTAGTTATAATTAAGA+GGG | - | chr1_4:10674684-10674703 | Msa0149820:intron | 25.0% |
| ! | TTAAATCATTTGTTCCTGAA+TGG | + | chr1_4:10675022-10675041 | None:intergenic | 25.0% |
| ! | GAATCAAAATCAATCAAAAG+TGG | + | chr1_4:10675341-10675360 | None:intergenic | 25.0% |
| !! | TCTCAGTTTGTATTTTATTG+GGG | - | chr1_4:10675376-10675395 | Msa0149820:intron | 25.0% |
| !! | TTTGATACTGTTGGTTATAA+AGG | - | chr1_4:10675451-10675470 | Msa0149820:CDS | 25.0% |
| ! | CTAGATTTATGGATACAATT+TGG | + | chr1_4:10675731-10675750 | None:intergenic | 25.0% |
| ! | TTGTATCCATAAATCTAGTT+TGG | - | chr1_4:10675733-10675752 | Msa0149820:intron | 25.0% |
| ! | AATGCATAAGAACAATTTAG+GGG | + | chr1_4:10675785-10675804 | None:intergenic | 25.0% |
| ! | CAATGCATAAGAACAATTTA+GGG | + | chr1_4:10675786-10675805 | None:intergenic | 25.0% |
| !! | TAGAGAAAGAATCGAAATTT+TGG | - | chr1_4:10675824-10675843 | Msa0149820:intron | 25.0% |
| !! | TTCAATGTAATTGTTCTAGA+TGG | - | chr1_4:10675863-10675882 | Msa0149820:CDS | 25.0% |
| ! | TAAAAGAACAACTCTTTCTA+TGG | + | chr1_4:10675957-10675976 | None:intergenic | 25.0% |
| !! | AAAACTGTACTATTTTACTC+TGG | - | chr1_4:10676244-10676263 | Msa0149820:intron | 25.0% |
| ! | TATAGGTTAAATTGCATGTT+TGG | - | chr1_4:10676289-10676308 | Msa0149820:intron | 25.0% |
| ! | TGACCAACAAATAAATGTAA+GGG | + | chr1_4:10676316-10676335 | None:intergenic | 25.0% |
| !! | TCTACAATTCAATTTTACCT+CGG | - | chr1_4:10676672-10676691 | Msa0149820:intron | 25.0% |
| ! | TTATTACACCAAAATTTCCA+TGG | - | chr1_4:10676970-10676989 | Msa0149820:intron | 25.0% |
| !! | TTGAATTTCCATGGAAATTT+TGG | + | chr1_4:10676981-10677000 | None:intergenic | 25.0% |
| ! | AACAATATGTTGAATTTCCA+TGG | + | chr1_4:10676990-10677009 | None:intergenic | 25.0% |
| ! | GAAATTCAACATATTGTTTC+TGG | - | chr1_4:10676992-10677011 | Msa0149820:intron | 25.0% |
| !! | TGTTTTCCAATTGAATTTGA+AGG | + | chr1_4:10677043-10677062 | None:intergenic | 25.0% |
| ! | ATGAAGAAGAAAGTAAAGAA+GGG | + | chr1_4:10677084-10677103 | None:intergenic | 25.0% |
| ! | TATGAAGAAGAAAGTAAAGA+AGG | + | chr1_4:10677085-10677104 | None:intergenic | 25.0% |
| ! | AATTATGTGAATGGATAGAA+GGG | + | chr1_4:10677108-10677127 | None:intergenic | 25.0% |
| ! | ATAATTATAGGAAGAGAGTA+TGG | - | chr1_4:10677185-10677204 | Msa0149820:intron | 25.0% |
| ! | AAACTTTAAATCTATTCACG+AGG | - | chr1_4:10677315-10677334 | Msa0149820:intron | 25.0% |
| ! | CAATATTCAATATCAAAGGT+AGG | + | chr1_4:10677710-10677729 | None:intergenic | 25.0% |
| ! | CTACCTTTGATATTGAATAT+TGG | - | chr1_4:10677708-10677727 | Msa0149820:CDS | 25.0% |
| !!! | TCTTGCTTAAGTTTTTTAAG+TGG | - | chr1_4:10677872-10677891 | Msa0149820:exon | 25.0% |
| ! | CTAATTGAATCCAAAACAAA+TGG | + | chr1_4:10678420-10678439 | None:intergenic | 25.0% |
| !!! | GATTTGTTTTCTTTGATTGA+AGG | - | chr1_4:10678462-10678481 | Msa0149820:intron | 25.0% |
| ! | CAAAACACACAAAATTAAAC+GGG | + | chr1_4:10678550-10678569 | None:intergenic | 25.0% |
| ! | TGAGTATTTATGTATCTTGT+TGG | - | chr1_4:10678568-10678587 | Msa0149820:intron | 25.0% |
| ! | GAGTATTTATGTATCTTGTT+GGG | - | chr1_4:10678569-10678588 | Msa0149820:intron | 25.0% |
| ! | GCTATAACTAAATTTGCAAA+AGG | - | chr1_4:10679150-10679169 | Msa0149820:intron | 25.0% |
| !!! | TCATGATTCATTTTTTCAAC+AGG | - | chr1_4:10679230-10679249 | Msa0149820:intron | 25.0% |
| ! | GGATGTTAAATATAGATCTT+TGG | + | chr1_4:10679327-10679346 | None:intergenic | 25.0% |
| !! | CATTTTCTGTGTTAGATTTT+CGG | - | chr1_4:10679503-10679522 | Msa0149820:intron | 25.0% |
| !! | ATTTTCTGTGTTAGATTTTC+GGG | - | chr1_4:10679504-10679523 | Msa0149820:intron | 25.0% |
| ! | TAAAATGACACGATTTATTG+AGG | + | chr1_4:10679670-10679689 | None:intergenic | 25.0% |
| ! | TCATGATTAAAGTTGTTCAA+TGG | + | chr1_4:10679695-10679714 | None:intergenic | 25.0% |
| ! | TCCTACTTATATTCTTAAAG+GGG | + | chr1_4:10680198-10680217 | None:intergenic | 25.0% |
| !!! | TATGTTAATTTGCATTTCGA+AGG | - | chr1_4:10680256-10680275 | Msa0149820:intron | 25.0% |
| !! | ATTACAAAATTTGCCACTTA+TGG | + | chr1_4:10680311-10680330 | None:intergenic | 25.0% |
| ! | TGTAATTTGAATTGTGATCT+AGG | - | chr1_4:10680325-10680344 | Msa0149820:intron | 25.0% |
| ! | ATGGTTAACTTTTCTGCTAT+CGG | - | chr1_4:10674508-10674527 | Msa0149820:intron | 30.0% |
| GATAATGCATGTGAAAATTC+GGG | + | chr1_4:10674585-10674604 | None:intergenic | 30.0% | |
| CGATAATGCATGTGAAAATT+CGG | + | chr1_4:10674586-10674605 | None:intergenic | 30.0% | |
| ! | CGAATTTTCACATGCATTAT+CGG | - | chr1_4:10674584-10674603 | Msa0149820:intron | 30.0% |
| AACAGTAACAGTACTATGTT+AGG | + | chr1_4:10674614-10674633 | None:intergenic | 30.0% | |
| GAGGAGTAGTTATAATTAAG+AGG | - | chr1_4:10674683-10674702 | Msa0149820:intron | 30.0% | |
| GGAGTAGTTATAATTAAGAG+GGG | - | chr1_4:10674685-10674704 | Msa0149820:intron | 30.0% | |
| ACCTCTTGTGTAAAAAAACA+TGG | - | chr1_4:10674748-10674767 | Msa0149820:three_prime_UTR | 30.0% | |
| TTGTTTACAATACCCCAAAA+TGG | - | chr1_4:10674776-10674795 | Msa0149820:intron | 30.0% | |
| TGTTTACAATACCCCAAAAT+GGG | - | chr1_4:10674777-10674796 | Msa0149820:intron | 30.0% | |
| !!! | AACCTCTTTTTTGTTCCATT+TGG | - | chr1_4:10674994-10675013 | Msa0149820:CDS | 30.0% |
| ATCCAAATGGAACAAAAAAG+AGG | + | chr1_4:10674999-10675018 | None:intergenic | 30.0% | |
| ACAAAAGCAAGATCAAAAAC+AGG | + | chr1_4:10675075-10675094 | None:intergenic | 30.0% | |
| TATGTGATCATGAAATTGCA+GGG | + | chr1_4:10675281-10675300 | None:intergenic | 30.0% | |
| ATATGTGATCATGAAATTGC+AGG | + | chr1_4:10675282-10675301 | None:intergenic | 30.0% | |
| TAGCTCTTGGAAAACTTAAT+AGG | - | chr1_4:10675422-10675441 | Msa0149820:intron | 30.0% | |
| AGCTCTTGGAAAACTTAATA+GGG | - | chr1_4:10675423-10675442 | Msa0149820:intron | 30.0% | |
| GATTATAACCAACAGAATCA+TGG | + | chr1_4:10675511-10675530 | None:intergenic | 30.0% | |
| ACTGAACCAAACTAGATTTA+TGG | + | chr1_4:10675742-10675761 | None:intergenic | 30.0% | |
| ! | AAATCTAGTTTGGTTCAGTT+TGG | - | chr1_4:10675743-10675762 | Msa0149820:intron | 30.0% |
| CCAATGCATAAGAACAATTT+AGG | + | chr1_4:10675787-10675806 | None:intergenic | 30.0% | |
| CCTAAATTGTTCTTATGCAT+TGG | - | chr1_4:10675784-10675803 | Msa0149820:intron | 30.0% | |
| !! | ATTGTTCTTATGCATTGGTT+TGG | - | chr1_4:10675789-10675808 | Msa0149820:intron | 30.0% |
| ! | CAAATTTTGAGCTTCTTAGT+AGG | + | chr1_4:10676093-10676112 | None:intergenic | 30.0% |
| ! | ACAATACAATGAGCTCTAAT+TGG | - | chr1_4:10676211-10676230 | Msa0149820:intron | 30.0% |
| CATCTGCATTGAAATCTTAT+AGG | - | chr1_4:10676272-10676291 | Msa0149820:intron | 30.0% | |
| GTGACCAACAAATAAATGTA+AGG | + | chr1_4:10676317-10676336 | None:intergenic | 30.0% | |
| CTATGTCTAAAAAGTCTAAG+TGG | + | chr1_4:10676433-10676452 | None:intergenic | 30.0% | |
| TAACTCAAAATTTGACGGAA+AGG | - | chr1_4:10676454-10676473 | Msa0149820:intron | 30.0% | |
| TGAAACCTGAAAGAAACATA+AGG | - | chr1_4:10676545-10676564 | Msa0149820:intron | 30.0% | |
| GAAACCTGAAAGAAACATAA+GGG | - | chr1_4:10676546-10676565 | Msa0149820:intron | 30.0% | |
| TCTTAACAGCTACAAATTGA+TGG | - | chr1_4:10676837-10676856 | Msa0149820:intron | 30.0% | |
| CTTAACAGCTACAAATTGAT+GGG | - | chr1_4:10676838-10676857 | Msa0149820:intron | 30.0% | |
| TTTGTAAGTATAAGCAATGG+TGG | + | chr1_4:10676898-10676917 | None:intergenic | 30.0% | |
| !! | AAAAAATTTGTTGTTGACGG+CGG | + | chr1_4:10676949-10676968 | None:intergenic | 30.0% |
| CAATTATGTGAATGGATAGA+AGG | + | chr1_4:10677109-10677128 | None:intergenic | 30.0% | |
| GAACATCACAATTATGTGAA+TGG | + | chr1_4:10677117-10677136 | None:intergenic | 30.0% | |
| AAGACGGATGCTATAATTAT+AGG | - | chr1_4:10677173-10677192 | Msa0149820:intron | 30.0% | |
| AAGCACAAAATGGAAATGAA+GGG | + | chr1_4:10677418-10677437 | None:intergenic | 30.0% | |
| TATGTTGTTAATAAGGAGTG+AGG | - | chr1_4:10677577-10677596 | Msa0149820:CDS | 30.0% | |
| CAGAAAATTGAATTTCTCTG+AGG | - | chr1_4:10677644-10677663 | Msa0149820:CDS | 30.0% | |
| AAGAGAATAAGCACAAGAAA+TGG | + | chr1_4:10677744-10677763 | None:intergenic | 30.0% | |
| ! | ATACTGTTTGAAGTTTGCAT+CGG | - | chr1_4:10677776-10677795 | Msa0149820:CDS | 30.0% |
| !!! | AAGTTTTTTAAGTGGTTGTC+TGG | - | chr1_4:10677880-10677899 | Msa0149820:exon | 30.0% |
| AACCAAAACAACAAAGAACA+GGG | + | chr1_4:10678140-10678159 | None:intergenic | 30.0% | |
| AAACCAAAACAACAAAGAAC+AGG | + | chr1_4:10678141-10678160 | None:intergenic | 30.0% | |
| AATTAGTGCTTAAGTTTCGT+TGG | - | chr1_4:10678226-10678245 | Msa0149820:intron | 30.0% | |
| ATTAGTGCTTAAGTTTCGTT+GGG | - | chr1_4:10678227-10678246 | Msa0149820:intron | 30.0% | |
| ATTGAATCCAAAACAAATGG+AGG | + | chr1_4:10678417-10678436 | None:intergenic | 30.0% | |
| !! | TTTATTAGTCTTCGCAATAG+CGG | - | chr1_4:10678615-10678634 | Msa0149820:intron | 30.0% |
| GTATTAGTATAGCAGATAGA+GGG | + | chr1_4:10678645-10678664 | None:intergenic | 30.0% | |
| AGTATTAGTATAGCAGATAG+AGG | + | chr1_4:10678646-10678665 | None:intergenic | 30.0% | |
| GTCTAAGAACATAGTGATTA+AGG | - | chr1_4:10678711-10678730 | Msa0149820:intron | 30.0% | |
| TAAGAACATAGTGATTAAGG+TGG | - | chr1_4:10678714-10678733 | Msa0149820:intron | 30.0% | |
| !!! | TTTATTTTAACACCAGACTG+TGG | - | chr1_4:10678909-10678928 | Msa0149820:intron | 30.0% |
| !!! | TTATTTTAACACCAGACTGT+GGG | - | chr1_4:10678910-10678929 | Msa0149820:intron | 30.0% |
| ! | TCATATCCATCTTTTGCTTT+GGG | + | chr1_4:10678981-10679000 | None:intergenic | 30.0% |
| ! | ATCATATCCATCTTTTGCTT+TGG | + | chr1_4:10678982-10679001 | None:intergenic | 30.0% |
| AAAGCAAAAGATGGATATGA+TGG | - | chr1_4:10678981-10679000 | Msa0149820:intron | 30.0% | |
| !!! | TGATTCATTTTTTCAACAGG+AGG | - | chr1_4:10679233-10679252 | Msa0149820:intron | 30.0% |
| !! | GTTGATTTTGTTCTATTAGC+TGG | - | chr1_4:10679262-10679281 | Msa0149820:intron | 30.0% |
| ATATAGATCTTTGGTAAGCT+CGG | + | chr1_4:10679318-10679337 | None:intergenic | 30.0% | |
| TCATCGACAAAATGAATTGT+AGG | + | chr1_4:10679531-10679550 | None:intergenic | 30.0% | |
| ! | CATTAGGATTTTCTTTGCTT+CGG | + | chr1_4:10679924-10679943 | None:intergenic | 30.0% |
| CGATTTCTTAGCTACTTATT+CGG | + | chr1_4:10680144-10680163 | None:intergenic | 30.0% | |
| CCTACTTATATTCTTAAAGG+GGG | + | chr1_4:10680197-10680216 | None:intergenic | 30.0% | |
| AACATAAGTCTATACCAAAC+AGG | + | chr1_4:10680242-10680261 | None:intergenic | 30.0% | |
| TTATCATACTGCACAAGTAT+TGG | - | chr1_4:10680448-10680467 | Msa0149820:five_prime_UTR | 30.0% | |
| !! | CTCATATTGCAAAAGTATTG+TGG | - | chr1_4:10680541-10680560 | Msa0149820:five_prime_UTR | 30.0% |
| !! | AAAGCGTTGTTAAGGACTTA+AGG | - | chr1_4:10674427-10674446 | Msa0149820:three_prime_UTR | 35.0% |
| CATACAAATAAGGGGAAAGA+AGG | + | chr1_4:10674460-10674479 | None:intergenic | 35.0% | |
| ! | TTTCCCCTTATTTGTATGTC+TGG | - | chr1_4:10674462-10674481 | Msa0149820:three_prime_UTR | 35.0% |
| ! | TTCCCCTTATTTGTATGTCT+GGG | - | chr1_4:10674463-10674482 | Msa0149820:three_prime_UTR | 35.0% |
| TATAATTAAGAGGGGAGCTT+TGG | - | chr1_4:10674693-10674712 | Msa0149820:intron | 35.0% | |
| !! | ACGATAAATTTGTTGTCACC+CGG | - | chr1_4:10674720-10674739 | Msa0149820:three_prime_UTR | 35.0% |
| ! | TTTACACAAGAGGTTGTTTC+CGG | + | chr1_4:10674742-10674761 | None:intergenic | 35.0% |
| !!! | GCCATGTTTTTTTACACAAG+AGG | + | chr1_4:10674752-10674771 | None:intergenic | 35.0% |
| GTTTACAATACCCCAAAATG+GGG | - | chr1_4:10674778-10674797 | Msa0149820:intron | 35.0% | |
| TTTACAATACCCCAAAATGG+GGG | - | chr1_4:10674779-10674798 | Msa0149820:intron | 35.0% | |
| ! | AAAGAGAAACTACTAGCTCT+TGG | - | chr1_4:10675409-10675428 | Msa0149820:intron | 35.0% |
| !! | AGGGTGTTATTTGATACTGT+TGG | - | chr1_4:10675442-10675461 | Msa0149820:intron | 35.0% |
| CTAAACAACCATGATTCTGT+TGG | - | chr1_4:10675500-10675519 | Msa0149820:CDS | 35.0% | |
| ! | ACTGTACTATTTTACTCTGG+CGG | - | chr1_4:10676247-10676266 | Msa0149820:intron | 35.0% |
| GGTCCCTTACATTTATTTGT+TGG | - | chr1_4:10676310-10676329 | Msa0149820:intron | 35.0% | |
| ACGCAAACATGGATAACTTT+GGG | - | chr1_4:10676403-10676422 | Msa0149820:intron | 35.0% | |
| AATTGCCTACATTGCATGTT+TGG | + | chr1_4:10676573-10676592 | None:intergenic | 35.0% | |
| GGTGAAAATGTTGAGGTTAT+GGG | + | chr1_4:10676928-10676947 | None:intergenic | 35.0% | |
| TCCACACCTTCAAATTCAAT+TGG | - | chr1_4:10677034-10677053 | Msa0149820:intron | 35.0% | |
| TCCAATTGAATTTGAAGGTG+TGG | + | chr1_4:10677038-10677057 | None:intergenic | 35.0% | |
| CATAATTGTGATGTTCCAAG+TGG | - | chr1_4:10677121-10677140 | Msa0149820:intron | 35.0% | |
| TTCTTTACCCTATCAGCATT+GGG | - | chr1_4:10677146-10677165 | Msa0149820:intron | 35.0% | |
| !!! | CTTTTTTCCCAATGCTGATA+GGG | + | chr1_4:10677156-10677175 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCCCAATGCTGAT+AGG | + | chr1_4:10677157-10677176 | None:intergenic | 35.0% |
| ! | ATCAGCATTGGGAAAAAAGA+CGG | - | chr1_4:10677157-10677176 | Msa0149820:intron | 35.0% |
| TCATGGAGATGTTGTTGTAT+TGG | - | chr1_4:10677357-10677376 | Msa0149820:intron | 35.0% | |
| ! | GTATTGGTCACGAATAAAAG+CGG | - | chr1_4:10677373-10677392 | Msa0149820:intron | 35.0% |
| AGCACAAAATGGAAATGAAG+GGG | + | chr1_4:10677417-10677436 | None:intergenic | 35.0% | |
| GAAGCACAAAATGGAAATGA+AGG | + | chr1_4:10677419-10677438 | None:intergenic | 35.0% | |
| ! | CTTTACACAGAAGCACAAAA+TGG | + | chr1_4:10677428-10677447 | None:intergenic | 35.0% |
| GAACTGTTCCAAAAAAGTCA+AGG | + | chr1_4:10677825-10677844 | None:intergenic | 35.0% | |
| CTTAAGCAAGAAATAACGCA+GGG | + | chr1_4:10677863-10677882 | None:intergenic | 35.0% | |
| ACTTAAGCAAGAAATAACGC+AGG | + | chr1_4:10677864-10677883 | None:intergenic | 35.0% | |
| ! | GTTTTCGATTGAATGAGAGT+GGG | + | chr1_4:10677943-10677962 | None:intergenic | 35.0% |
| ! | TGTTTTCGATTGAATGAGAG+TGG | + | chr1_4:10677944-10677963 | None:intergenic | 35.0% |
| GAAACAAAGAGACAGAACAA+TGG | + | chr1_4:10677977-10677996 | None:intergenic | 35.0% | |
| ! | TTCTGTCTCTTTGTTTCAAG+TGG | - | chr1_4:10677980-10677999 | Msa0149820:five_prime_UTR | 35.0% |
| ! | TCTGTCTCTTTGTTTCAAGT+GGG | - | chr1_4:10677981-10678000 | Msa0149820:five_prime_UTR | 35.0% |
| ! | TCTTTCTTCCCTCTTTGTTT+CGG | - | chr1_4:10678040-10678059 | Msa0149820:intron | 35.0% |
| ACCAAAACAACAAAGAACAG+GGG | + | chr1_4:10678139-10678158 | None:intergenic | 35.0% | |
| !!! | TGTTGTTTTGGTTTCTGCAA+AGG | - | chr1_4:10678147-10678166 | Msa0149820:intron | 35.0% |
| GCTTTGTAGATGAAGAAGAA+CGG | + | chr1_4:10678350-10678369 | None:intergenic | 35.0% | |
| AGAAGTAAGAGGAAAATGGA+GGG | + | chr1_4:10678372-10678391 | None:intergenic | 35.0% | |
| ATGCAGAAGTAAGAGGAAAA+TGG | + | chr1_4:10678376-10678395 | None:intergenic | 35.0% | |
| ! | TGCTTTTCCTCCATTTGTTT+TGG | - | chr1_4:10678407-10678426 | Msa0149820:intron | 35.0% |
| ! | ATACTGCTATAGCAGTTTTG+CGG | - | chr1_4:10678661-10678680 | Msa0149820:intron | 35.0% |
| !!! | TATTTTAACACCAGACTGTG+GGG | - | chr1_4:10678911-10678930 | Msa0149820:intron | 35.0% |
| TGCAAGACAAAATGGTATAC+CGG | - | chr1_4:10678944-10678963 | Msa0149820:intron | 35.0% | |
| ! | CATATCCATCTTTTGCTTTG+GGG | + | chr1_4:10678980-10678999 | None:intergenic | 35.0% |
| GTGATAATAAGTAGCGAGAA+AGG | + | chr1_4:10679481-10679500 | None:intergenic | 35.0% | |
| GTGAATCATTAGTAAGCACA+GGG | + | chr1_4:10679593-10679612 | None:intergenic | 35.0% | |
| TAATGATTCACCAGAAGAGT+TGG | - | chr1_4:10679602-10679621 | Msa0149820:intron | 35.0% | |
| GGAACACCAATTATATGTTG+AGG | - | chr1_4:10679840-10679859 | Msa0149820:intron | 35.0% | |
| ACACCAATTATATGTTGAGG+TGG | - | chr1_4:10679843-10679862 | Msa0149820:intron | 35.0% | |
| CAACCACCTCAACATATAAT+TGG | + | chr1_4:10679849-10679868 | None:intergenic | 35.0% | |
| ATTATATGTTGAGGTGGTTG+AGG | - | chr1_4:10679849-10679868 | Msa0149820:intron | 35.0% | |
| TATGTGAAGACCGTATAGTT+TGG | - | chr1_4:10679875-10679894 | Msa0149820:intron | 35.0% | |
| CATCTTTCCTCCAAACTATA+CGG | + | chr1_4:10679888-10679907 | None:intergenic | 35.0% | |
| ! | TGTGACTTTGTTCCTTTTAC+AGG | - | chr1_4:10680076-10680095 | Msa0149820:intron | 35.0% |
| ! | GTGACTTTGTTCCTTTTACA+GGG | - | chr1_4:10680077-10680096 | Msa0149820:intron | 35.0% |
| ! | TGACTTTGTTCCTTTTACAG+GGG | - | chr1_4:10680078-10680097 | Msa0149820:intron | 35.0% |
| AGTGTACTCAAACAATCATG+TGG | - | chr1_4:10680169-10680188 | Msa0149820:intron | 35.0% | |
| ! | CCCCCTTTAAGAATATAAGT+AGG | - | chr1_4:10680194-10680213 | Msa0149820:intron | 35.0% |
| AAGTCTATACCAAACAGGTT+AGG | + | chr1_4:10680237-10680256 | None:intergenic | 35.0% | |
| ! | TGCAGTATGATAATGCACAT+GGG | + | chr1_4:10680441-10680460 | None:intergenic | 35.0% |
| !! | GTCTGTAGAAAGCGTTGTTA+AGG | - | chr1_4:10674419-10674438 | Msa0149820:three_prime_UTR | 40.0% |
| CACCCAGACATACAAATAAG+GGG | + | chr1_4:10674468-10674487 | None:intergenic | 40.0% | |
| CCACCCAGACATACAAATAA+GGG | + | chr1_4:10674469-10674488 | None:intergenic | 40.0% | |
| ! | CCTTATTTGTATGTCTGGGT+GGG | - | chr1_4:10674467-10674486 | Msa0149820:three_prime_UTR | 40.0% |
| ! | AACTTTTCTGCTATCGGCAA+AGG | - | chr1_4:10674514-10674533 | Msa0149820:intron | 40.0% |
| TAGAGATGTGTTCGATTACG+AGG | - | chr1_4:10674664-10674683 | Msa0149820:intron | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+GGG | + | chr1_4:10674741-10674760 | None:intergenic | 40.0% |
| TATTTCCAAAGCTGAGAAGC+TGG | + | chr1_4:10674891-10674910 | None:intergenic | 40.0% | |
| CGCACAAGTGAATTAGATAC+AGG | + | chr1_4:10674918-10674937 | None:intergenic | 40.0% | |
| TCTAATTCACTTGTGCGTCA+TGG | - | chr1_4:10674921-10674940 | Msa0149820:CDS | 40.0% | |
| CTAATTCACTTGTGCGTCAT+GGG | - | chr1_4:10674922-10674941 | Msa0149820:CDS | 40.0% | |
| TGTTCCATTTGGATCCATTC+AGG | - | chr1_4:10675005-10675024 | Msa0149820:CDS | 40.0% | |
| TGTTCCTGAATGGATCCAAA+TGG | + | chr1_4:10675012-10675031 | None:intergenic | 40.0% | |
| AAGGGTTCAGGCAAAAAAAC+CGG | - | chr1_4:10675581-10675600 | Msa0149820:CDS | 40.0% | |
| ! | ACAATTTAGGGGTGTGCAAA+TGG | + | chr1_4:10675774-10675793 | None:intergenic | 40.0% |
| ! | AGAGTGAGGTGTTAGTTGTT+GGG | + | chr1_4:10676000-10676019 | None:intergenic | 40.0% |
| GACGCAAACATGGATAACTT+TGG | - | chr1_4:10676402-10676421 | Msa0149820:intron | 40.0% | |
| CGCAAACATGGATAACTTTG+GGG | - | chr1_4:10676404-10676423 | Msa0149820:intron | 40.0% | |
| GCAAACATGGATAACTTTGG+GGG | - | chr1_4:10676405-10676424 | Msa0149820:intron | 40.0% | |
| ATGCTGACATCAGTAACCTA+AGG | - | chr1_4:10676485-10676504 | Msa0149820:intron | 40.0% | |
| TGCTGACATCAGTAACCTAA+GGG | - | chr1_4:10676486-10676505 | Msa0149820:intron | 40.0% | |
| ! | AAGTTTCAAGTAGGTCCCTT+AGG | + | chr1_4:10676504-10676523 | None:intergenic | 40.0% |
| TGGTCCCTTATGTTTCTTTC+AGG | + | chr1_4:10676553-10676572 | None:intergenic | 40.0% | |
| GTTGTAGTAGATCACTTGTG+CGG | - | chr1_4:10676758-10676777 | Msa0149820:intron | 40.0% | |
| CGGTGAAAATGTTGAGGTTA+TGG | + | chr1_4:10676929-10676948 | None:intergenic | 40.0% | |
| !! | GAAGGTGTGGATGATAGTTT+TGG | + | chr1_4:10677025-10677044 | None:intergenic | 40.0% |
| ATAGGGTAAAGAACTCCACT+TGG | + | chr1_4:10677139-10677158 | None:intergenic | 40.0% | |
| GTTCTTTACCCTATCAGCAT+TGG | - | chr1_4:10677145-10677164 | Msa0149820:intron | 40.0% | |
| TGATGTTGCAGATTTCAGCA+AGG | - | chr1_4:10677222-10677241 | Msa0149820:intron | 40.0% | |
| ! | TATTCACGAGGCATCCAAAA+GGG | - | chr1_4:10677327-10677346 | Msa0149820:intron | 40.0% |
| GTCACGAATAAAAGCGGTAA+TGG | - | chr1_4:10677379-10677398 | Msa0149820:intron | 40.0% | |
| GAAATGAAGGGGTGGTTATA+AGG | + | chr1_4:10677406-10677425 | None:intergenic | 40.0% | |
| ACAAAATGGAAATGAAGGGG+TGG | + | chr1_4:10677414-10677433 | None:intergenic | 40.0% | |
| TGTTAATAAGGAGTGAGGTG+AGG | - | chr1_4:10677582-10677601 | Msa0149820:CDS | 40.0% | |
| !!! | TCGCAATGCCTTGACTTTTT+TGG | - | chr1_4:10677814-10677833 | Msa0149820:CDS | 40.0% |
| GAAGATGAACCATTGTGCAA+TGG | - | chr1_4:10678003-10678022 | Msa0149820:five_prime_UTR | 40.0% | |
| AAAGAGGGAAGAAAGATGCT+TGG | + | chr1_4:10678036-10678055 | None:intergenic | 40.0% | |
| ! | CTTTCTTCCCTCTTTGTTTC+GGG | - | chr1_4:10678041-10678060 | Msa0149820:intron | 40.0% |
| ! | TTTCTTCCCTCTTTGTTTCG+GGG | - | chr1_4:10678042-10678061 | Msa0149820:intron | 40.0% |
| TAGAATGTTGCAGAAGCTGA+AGG | + | chr1_4:10678103-10678122 | None:intergenic | 40.0% | |
| TCAGCTTCTGCAACATTCTA+TGG | - | chr1_4:10678103-10678122 | Msa0149820:intron | 40.0% | |
| CAGCTTCTGCAACATTCTAT+GGG | - | chr1_4:10678104-10678123 | Msa0149820:intron | 40.0% | |
| !!! | ACCCCTGTTCTTTGTTGTTT+TGG | - | chr1_4:10678135-10678154 | Msa0149820:intron | 40.0% |
| AGACAAAGAGAGAAGGATAC+TGG | + | chr1_4:10678184-10678203 | None:intergenic | 40.0% | |
| TATCCTTCTCTCTTTGTCTG+CGG | - | chr1_4:10678185-10678204 | Msa0149820:intron | 40.0% | |
| CTTGTATCCAGAAGGAGAAA+CGG | + | chr1_4:10678321-10678340 | None:intergenic | 40.0% | |
| CAGAAGTAAGAGGAAAATGG+AGG | + | chr1_4:10678373-10678392 | None:intergenic | 40.0% | |
| ACAAATGGAGGAAAAGCAGA+TGG | + | chr1_4:10678405-10678424 | None:intergenic | 40.0% | |
| TAGTATAGCAGATAGAGGGA+TGG | + | chr1_4:10678641-10678660 | None:intergenic | 40.0% | |
| CTTAGACTCAAATAGCAGCA+TGG | + | chr1_4:10678698-10678717 | None:intergenic | 40.0% | |
| ACTAGCTGCATCAATACACA+AGG | + | chr1_4:10678795-10678814 | None:intergenic | 40.0% | |
| !! | ATTTTAACACCAGACTGTGG+GGG | - | chr1_4:10678912-10678931 | Msa0149820:intron | 40.0% |
| ATGACCTTGTCGATACACTA+AGG | - | chr1_4:10679015-10679034 | Msa0149820:intron | 40.0% | |
| !!! | TTTTTTCAACAGGAGGTTCG+AGG | - | chr1_4:10679240-10679259 | Msa0149820:intron | 40.0% |
| ATACCTCAAGCTTATACCAG+CGG | - | chr1_4:10679285-10679304 | Msa0149820:intron | 40.0% | |
| CACAAAGCAGTAATTGCTTC+CGG | - | chr1_4:10679400-10679419 | Msa0149820:intron | 40.0% | |
| GGTGAATCATTAGTAAGCAC+AGG | + | chr1_4:10679594-10679613 | None:intergenic | 40.0% | |
| CGTATAGTTTGGAGGAAAGA+TGG | - | chr1_4:10679886-10679905 | Msa0149820:intron | 40.0% | |
| ! | TTTTCTTTGCTTCGGATGAG+AGG | + | chr1_4:10679916-10679935 | None:intergenic | 40.0% |
| ! | GTTCCTTTTACAGGGGATTT+TGG | - | chr1_4:10680085-10680104 | Msa0149820:intron | 40.0% |
| CAGATTTCAGAGCAAACTTG+TGG | + | chr1_4:10680111-10680130 | None:intergenic | 40.0% | |
| ! | CTTTTCTCTCCTAACCTGTT+TGG | - | chr1_4:10680225-10680244 | Msa0149820:intron | 40.0% |
| TACATTGTAGCTAAGCGCTA+AGG | + | chr1_4:10680283-10680302 | None:intergenic | 40.0% | |
| ACAATGTAGCACTCCATAAG+TGG | - | chr1_4:10680295-10680314 | Msa0149820:intron | 40.0% | |
| TCTCTCCATAGAGTAGCAAA+TGG | - | chr1_4:10680399-10680418 | Msa0149820:intron | 40.0% | |
| ! | GATTGCCATTTGCTACTCTA+TGG | + | chr1_4:10680407-10680426 | None:intergenic | 40.0% |
| ! | TATGATAATGCACATGGGAG+GGG | + | chr1_4:10680436-10680455 | None:intergenic | 40.0% |
| ! | GTATGATAATGCACATGGGA+GGG | + | chr1_4:10680437-10680456 | None:intergenic | 40.0% |
| ! | AGTATGATAATGCACATGGG+AGG | + | chr1_4:10680438-10680457 | None:intergenic | 40.0% |
| ! | GTGCAGTATGATAATGCACA+TGG | + | chr1_4:10680442-10680461 | None:intergenic | 40.0% |
| ! | TTCAGTCACTTTCTCTAAGG+AGG | + | chr1_4:10680475-10680494 | None:intergenic | 40.0% |
| ! | GACTTCAGTCACTTTCTCTA+AGG | + | chr1_4:10680478-10680497 | None:intergenic | 40.0% |
| AAGTGACTGAAGTCTTTCCA+TGG | - | chr1_4:10680484-10680503 | Msa0149820:five_prime_UTR | 40.0% | |
| GGATCAAAATTGCTACACCA+TGG | + | chr1_4:10680504-10680523 | None:intergenic | 40.0% | |
| ATGAGAATGCACAAGTGGAA+GGG | + | chr1_4:10680526-10680545 | None:intergenic | 40.0% | |
| TATGAGAATGCACAAGTGGA+AGG | + | chr1_4:10680527-10680546 | None:intergenic | 40.0% | |
| GCAATATGAGAATGCACAAG+TGG | + | chr1_4:10680531-10680550 | None:intergenic | 40.0% | |
| ATCTGTTGCCAAGAGAGACA+GGG | + | chr1_4:10674349-10674368 | None:intergenic | 45.0% | |
| ! | CCCTTATTTGTATGTCTGGG+TGG | - | chr1_4:10674466-10674485 | Msa0149820:three_prime_UTR | 45.0% |
| CCCACCCAGACATACAAATA+AGG | + | chr1_4:10674470-10674489 | None:intergenic | 45.0% | |
| TAGTTCCAGCTTCTCAGCTT+TGG | - | chr1_4:10674883-10674902 | Msa0149820:intron | 45.0% | |
| ! | TCAGGCAAAAAAACCGGTTC+AGG | - | chr1_4:10675587-10675606 | Msa0149820:CDS | 45.0% |
| !!! | CCGGATTTTTTCACCTGAAC+CGG | + | chr1_4:10675603-10675622 | None:intergenic | 45.0% |
| CCGGTTCAGGTGAAAAAATC+CGG | - | chr1_4:10675600-10675619 | Msa0149820:CDS | 45.0% | |
| CAGGTGAAAAAATCCGGTTC+AGG | - | chr1_4:10675606-10675625 | Msa0149820:intron | 45.0% | |
| ATCCGGTTCAGGACAAAAAC+CGG | - | chr1_4:10675617-10675636 | Msa0149820:intron | 45.0% | |
| !! | AACCGGTTTTTGTCCTGAAC+CGG | + | chr1_4:10675622-10675641 | None:intergenic | 45.0% |
| ! | AAAACCGGTTCAGCATGAAC+CGG | - | chr1_4:10675632-10675651 | Msa0149820:intron | 45.0% |
| AGTTCAGTCCAGTTCAGATC+CGG | + | chr1_4:10675654-10675673 | None:intergenic | 45.0% | |
| TGGACTGAACTGTATCGAAC+CGG | - | chr1_4:10675663-10675682 | Msa0149820:intron | 45.0% | |
| ! | GAGAGTGAGGTGTTAGTTGT+TGG | + | chr1_4:10676001-10676020 | None:intergenic | 45.0% |
| TATAGTAGGGAGTGAGAGTG+AGG | + | chr1_4:10676014-10676033 | None:intergenic | 45.0% | |
| TTCCGTTTACAACGTCCACA+TGG | - | chr1_4:10676371-10676390 | Msa0149820:intron | 45.0% | |
| AGCCATGTGGACGTTGTAAA+CGG | + | chr1_4:10676376-10676395 | None:intergenic | 45.0% | |
| AGGGACCAAACATGCAATGT+AGG | - | chr1_4:10676565-10676584 | Msa0149820:intron | 45.0% | |
| TGGGTGAAATCAATTTGCCG+AGG | + | chr1_4:10676692-10676711 | None:intergenic | 45.0% | |
| ATGGTGGCAGCAACTTTCAA+AGG | + | chr1_4:10676882-10676901 | None:intergenic | 45.0% | |
| AGATTTCAGCAAGGAGCTTG+AGG | - | chr1_4:10677231-10677250 | Msa0149820:intron | 45.0% | |
| AAAGCTGGCTGTGTTTGTGT+CGG | - | chr1_4:10677282-10677301 | Msa0149820:intron | 45.0% | |
| ! | CTATTCACGAGGCATCCAAA+AGG | - | chr1_4:10677326-10677345 | Msa0149820:intron | 45.0% |
| ! | ATTCACGAGGCATCCAAAAG+GGG | - | chr1_4:10677328-10677347 | Msa0149820:intron | 45.0% |
| ! | TTGAATTTCTCTGAGGAGCC+TGG | - | chr1_4:10677651-10677670 | Msa0149820:CDS | 45.0% |
| !! | CCTGGCTCTATGAGTAGATT+GGG | - | chr1_4:10677669-10677688 | Msa0149820:CDS | 45.0% |
| GAAATAACGCAGGGCAAAGA+AGG | + | chr1_4:10677854-10677873 | None:intergenic | 45.0% | |
| ! | TTCTTCCCTCTTTGTTTCGG+GGG | - | chr1_4:10678043-10678062 | Msa0149820:intron | 45.0% |
| AATGTTGCAGAAGCTGAAGG+AGG | + | chr1_4:10678100-10678119 | None:intergenic | 45.0% | |
| TTACCGCAGACAAAGAGAGA+AGG | + | chr1_4:10678191-10678210 | None:intergenic | 45.0% | |
| AGAAACGGAATACTGAGTCG+CGG | + | chr1_4:10678306-10678325 | None:intergenic | 45.0% | |
| CAGTATTCCGTTTCTCCTTC+TGG | - | chr1_4:10678311-10678330 | Msa0149820:intron | 45.0% | |
| GGAGCTTACTTGTATCCAGA+AGG | + | chr1_4:10678329-10678348 | None:intergenic | 45.0% | |
| GCTTTGCATGCAGAAGTAAG+AGG | + | chr1_4:10678383-10678402 | None:intergenic | 45.0% | |
| GCGGAGTATGCAAGACAAAA+TGG | - | chr1_4:10678936-10678955 | Msa0149820:intron | 45.0% | |
| !! | GCTTTGGGGAACACTATAAC+CGG | + | chr1_4:10678966-10678985 | None:intergenic | 45.0% |
| GTGTTCCCCAAAGCAAAAGA+TGG | - | chr1_4:10678972-10678991 | Msa0149820:intron | 45.0% | |
| ! | CTGACCTTAGTGTATCGACA+AGG | + | chr1_4:10679022-10679041 | None:intergenic | 45.0% |
| ! | AAGCTGGAAGAAGTGATGGA+TGG | + | chr1_4:10679348-10679367 | None:intergenic | 45.0% |
| CCAAAAGCTGGAAGAAGTGA+TGG | + | chr1_4:10679352-10679371 | None:intergenic | 45.0% | |
| ! | CCATCACTTCTTCCAGCTTT+TGG | - | chr1_4:10679349-10679368 | Msa0149820:intron | 45.0% |
| ! | TCACTTCTTCCAGCTTTTGG+AGG | - | chr1_4:10679352-10679371 | Msa0149820:intron | 45.0% |
| ! | TTTGGAGGCAAGGGCTTTTA+TGG | - | chr1_4:10679367-10679386 | Msa0149820:intron | 45.0% |
| ! | TTGGAGGCAAGGGCTTTTAT+GGG | - | chr1_4:10679368-10679387 | Msa0149820:intron | 45.0% |
| TCGATGAGCACTATGACACA+GGG | - | chr1_4:10679544-10679563 | Msa0149820:intron | 45.0% | |
| GTGAAGACCGTATAGTTTGG+AGG | - | chr1_4:10679878-10679897 | Msa0149820:intron | 45.0% | |
| TGGCCAAAATCCCCTGTAAA+AGG | + | chr1_4:10680091-10680110 | None:intergenic | 45.0% | |
| AGAGTAGCAAATGGCAATCG+TGG | - | chr1_4:10680408-10680427 | Msa0149820:intron | 45.0% | |
| ! | ATGATAATGCACATGGGAGG+GGG | + | chr1_4:10680435-10680454 | None:intergenic | 45.0% |
| TGAGAATGCACAAGTGGAAG+GGG | + | chr1_4:10680525-10680544 | None:intergenic | 45.0% | |
| !! | TTAATTAAATTATATTTGAT+TGG | - | chr1_4:10675120-10675139 | Msa0149820:intron | 5.0% |
| !! | CAATTTAAAAAAAAAAAAAA+AGG | - | chr1_4:10675562-10675581 | Msa0149820:CDS | 5.0% |
| !!! | GACAGGGATTTTGGCTTCGA+TGG | + | chr1_4:10674333-10674352 | None:intergenic | 50.0% |
| GCCAAAATCCCTGTCTCTCT+TGG | - | chr1_4:10674338-10674357 | Msa0149820:three_prime_UTR | 50.0% | |
| ! | GCCAAGAGAGACAGGGATTT+TGG | + | chr1_4:10674342-10674361 | None:intergenic | 50.0% |
| GATCTGTTGCCAAGAGAGAC+AGG | + | chr1_4:10674350-10674369 | None:intergenic | 50.0% | |
| ACAATACCCCAAAATGGGGG+TGG | - | chr1_4:10674782-10674801 | Msa0149820:intron | 50.0% | |
| CAATACCCCAAAATGGGGGT+GGG | - | chr1_4:10674783-10674802 | Msa0149820:intron | 50.0% | |
| AATACCCCAAAATGGGGGTG+GGG | - | chr1_4:10674784-10674803 | Msa0149820:intron | 50.0% | |
| AGATCCGGTTCATGCTGAAC+CGG | + | chr1_4:10675639-10675658 | None:intergenic | 50.0% | |
| AGCATGAACCGGATCTGAAC+TGG | - | chr1_4:10675643-10675662 | Msa0149820:intron | 50.0% | |
| TTGCGTCTCTGTTAGCCATG+TGG | + | chr1_4:10676389-10676408 | None:intergenic | 50.0% | |
| GGCTAACAGAGACGCAAACA+TGG | - | chr1_4:10676392-10676411 | Msa0149820:intron | 50.0% | |
| TGACGGCGGTGAAAATGTTG+AGG | + | chr1_4:10676935-10676954 | None:intergenic | 50.0% | |
| ! | TTTTTCCTTCTCCCCGTGAC+CGG | + | chr1_4:10677265-10677284 | None:intergenic | 50.0% |
| AAGCTGGCTGTGTTTGTGTC+GGG | - | chr1_4:10677283-10677302 | Msa0149820:intron | 50.0% | |
| ! | TTCACGAGGCATCCAAAAGG+GGG | - | chr1_4:10677329-10677348 | Msa0149820:intron | 50.0% |
| TCCAAAAGGGGGTCACTTCA+TGG | - | chr1_4:10677340-10677359 | Msa0149820:intron | 50.0% | |
| ! | TCCATGAAGTGACCCCCTTT+TGG | + | chr1_4:10677344-10677363 | None:intergenic | 50.0% |
| AGTGAGGTGAGGATGACAGT+GGG | - | chr1_4:10677593-10677612 | Msa0149820:CDS | 50.0% | |
| !! | GCCTGGCTCTATGAGTAGAT+TGG | - | chr1_4:10677668-10677687 | Msa0149820:CDS | 50.0% |
| CCCAATCTACTCATAGAGCC+AGG | + | chr1_4:10677672-10677691 | None:intergenic | 50.0% | |
| GGTTGTGCACCATTGCACAA+TGG | + | chr1_4:10678015-10678034 | None:intergenic | 50.0% | |
| TTCGTCCCCCGAAACAAAGA+GGG | + | chr1_4:10678051-10678070 | None:intergenic | 50.0% | |
| ! | GGGGACGAAGACAACTTTTC+CGG | - | chr1_4:10678062-10678081 | Msa0149820:intron | 50.0% |
| CTTTGTCTGCGGTAATAGCG+AGG | - | chr1_4:10678196-10678215 | Msa0149820:intron | 50.0% | |
| ! | GCTATAGCAGTTTTGCGGTC+TGG | - | chr1_4:10678666-10678685 | Msa0149820:intron | 50.0% |
| GTTCCGCTGGTATAAGCTTG+AGG | + | chr1_4:10679291-10679310 | None:intergenic | 50.0% | |
| !! | TCTTCCAGCTTTTGGAGGCA+AGG | - | chr1_4:10679357-10679376 | Msa0149820:intron | 50.0% |
| !! | CTTCCAGCTTTTGGAGGCAA+GGG | - | chr1_4:10679358-10679377 | Msa0149820:intron | 50.0% |
| GAGAGAAATGTACCTTGCGC+CGG | + | chr1_4:10679422-10679441 | None:intergenic | 50.0% | |
| GTCGATGAGCACTATGACAC+AGG | - | chr1_4:10679543-10679562 | Msa0149820:intron | 50.0% | |
| ACTCTTGCAGCCAACTCTTC+TGG | + | chr1_4:10679615-10679634 | None:intergenic | 50.0% | |
| !! | GGCTGCAAGAGTTCTAAGAG+AGG | - | chr1_4:10679623-10679642 | Msa0149820:intron | 50.0% |
| CAGGTTAGGAGAGAAAAGCG+AGG | + | chr1_4:10680223-10680242 | None:intergenic | 50.0% | |
| TTGCGAGTGAGAGCGGCAAA+CGG | + | chr1_4:10674391-10674410 | None:intergenic | 55.0% | |
| ACGAGAGTTGCGAGTGAGAG+CGG | + | chr1_4:10674398-10674417 | None:intergenic | 55.0% | |
| ATACCCCAAAATGGGGGTGG+GGG | - | chr1_4:10674785-10674804 | Msa0149820:intron | 55.0% | |
| CTTCCTGGACCATGCGTATG+CGG | - | chr1_4:10674809-10674828 | Msa0149820:intron | 55.0% | |
| TTCCTGGACCATGCGTATGC+GGG | - | chr1_4:10674810-10674829 | Msa0149820:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+TGG | + | chr1_4:10674821-10674840 | None:intergenic | 55.0% | |
| GGAGCTTGAGGTGAAAGCTC+CGG | - | chr1_4:10677243-10677262 | Msa0149820:intron | 55.0% | |
| TGAGGTGAAAGCTCCGGTCA+CGG | - | chr1_4:10677249-10677268 | Msa0149820:intron | 55.0% | |
| CACGGGGAGAAGGAAAAAGC+TGG | - | chr1_4:10677267-10677286 | Msa0149820:intron | 55.0% | |
| GAGTGAGGTGAGGATGACAG+TGG | - | chr1_4:10677592-10677611 | Msa0149820:CDS | 55.0% | |
| CTTCGTCCCCCGAAACAAAG+AGG | + | chr1_4:10678052-10678071 | None:intergenic | 55.0% | |
| TAAGCTCGGATCAGTTCCGC+TGG | + | chr1_4:10679304-10679323 | None:intergenic | 55.0% | |
| AAGCCCTTGCCTCCAAAAGC+TGG | + | chr1_4:10679364-10679383 | None:intergenic | 55.0% | |
| CAGTAATTGCTTCCGGCGCA+AGG | - | chr1_4:10679407-10679426 | Msa0149820:intron | 55.0% | |
| TACCCCAAAATGGGGGTGGG+GGG | - | chr1_4:10674786-10674805 | Msa0149820:intron | 60.0% | |
| ! | AAGCCCCCCACCCCCATTTT+GGG | + | chr1_4:10674792-10674811 | None:intergenic | 60.0% |
| GAGGTGAAAGCTCCGGTCAC+GGG | - | chr1_4:10677250-10677269 | Msa0149820:intron | 60.0% | |
| AGGTGAAAGCTCCGGTCACG+GGG | - | chr1_4:10677251-10677270 | Msa0149820:intron | 60.0% | |
| CTGGCTGTGTTTGTGTCGGG+TGG | - | chr1_4:10677286-10677305 | Msa0149820:intron | 60.0% | |
| GCTGTGTTTGTGTCGGGTGG+AGG | - | chr1_4:10677289-10677308 | Msa0149820:intron | 60.0% | |
| AAGGAGGCTGTTGCTGTCGC+CGG | + | chr1_4:10678084-10678103 | None:intergenic | 60.0% | |
| AACACCAGACTGTGGGGGTG+CGG | - | chr1_4:10678917-10678936 | Msa0149820:intron | 60.0% | |
| CAGGGACAACACGCTGAGCA+AGG | + | chr1_4:10679575-10679594 | None:intergenic | 60.0% | |
| CAAACGGCGGCGGAGGAGAA+CGG | + | chr1_4:10674375-10674394 | None:intergenic | 65.0% | |
| CGAGTGAGAGCGGCAAACGG+CGG | + | chr1_4:10674388-10674407 | None:intergenic | 65.0% | |
| ! | AGCCCCCCACCCCCATTTTG+GGG | + | chr1_4:10674791-10674810 | None:intergenic | 65.0% |
| ! | GAAGCCCCCCACCCCCATTT+TGG | + | chr1_4:10674793-10674812 | None:intergenic | 65.0% |
| CTCCCGCATACGCATGGTCC+AGG | + | chr1_4:10674815-10674834 | None:intergenic | 65.0% | |
| AAGCTCCGGTCACGGGGAGA+AGG | - | chr1_4:10677257-10677276 | Msa0149820:intron | 65.0% | |
| TACTCCGCACCCCCACAGTC+TGG | + | chr1_4:10678924-10678943 | None:intergenic | 65.0% | |
| GTGAGAGCGGCAAACGGCGG+CGG | + | chr1_4:10674385-10674404 | None:intergenic | 70.0% | |
| AATGGGGGTGGGGGGCTTCC+TGG | - | chr1_4:10674794-10674813 | Msa0149820:intron | 70.0% | |
| ACGGCGGCGGAGGAGAACGG+TGG | + | chr1_4:10674372-10674391 | None:intergenic | 75.0% | |
| AGAGCGGCAAACGGCGGCGG+AGG | + | chr1_4:10674382-10674401 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 10674274 | 10680598 | 10674274 | ID=Msa0149820;Name=Msa0149820 |
| chr1_4 | mRNA | 10674274 | 10680598 | 10674274 | ID=Msa0149820-mRNA-1;Parent=Msa0149820;Name=Msa0149820-mRNA-1;_AED=0.15;_eAED=0.15;_QI=318|1|1|1|0.57|0.37|8|308|311 |
| chr1_4 | exon | 10674274 | 10674507 | 10674274 | ID=Msa0149820-mRNA-1:exon:4545;Parent=Msa0149820-mRNA-1 |
| chr1_4 | exon | 10674716 | 10674774 | 10674716 | ID=Msa0149820-mRNA-1:exon:4544;Parent=Msa0149820-mRNA-1 |
| chr1_4 | exon | 10674903 | 10675031 | 10674903 | ID=Msa0149820-mRNA-1:exon:4543;Parent=Msa0149820-mRNA-1 |
| chr1_4 | exon | 10675228 | 10675354 | 10675228 | ID=Msa0149820-mRNA-1:exon:4542;Parent=Msa0149820-mRNA-1 |
| chr1_4 | exon | 10675444 | 10675620 | 10675444 | ID=Msa0149820-mRNA-1:exon:4541;Parent=Msa0149820-mRNA-1 |
| chr1_4 | exon | 10675836 | 10675947 | 10675836 | ID=Msa0149820-mRNA-1:exon:4540;Parent=Msa0149820-mRNA-1 |
| chr1_4 | exon | 10677478 | 10678026 | 10677478 | ID=Msa0149820-mRNA-1:exon:4539;Parent=Msa0149820-mRNA-1 |
| chr1_4 | exon | 10680424 | 10680598 | 10680424 | ID=Msa0149820-mRNA-1:exon:4538;Parent=Msa0149820-mRNA-1 |
| chr1_4 | five_prime_UTR | 10680424 | 10680598 | 10680424 | ID=Msa0149820-mRNA-1:five_prime_utr;Parent=Msa0149820-mRNA-1 |
| chr1_4 | five_prime_UTR | 10677884 | 10678026 | 10677884 | ID=Msa0149820-mRNA-1:five_prime_utr;Parent=Msa0149820-mRNA-1 |
| chr1_4 | CDS | 10677478 | 10677883 | 10677478 | ID=Msa0149820-mRNA-1:cds;Parent=Msa0149820-mRNA-1 |
| chr1_4 | CDS | 10675836 | 10675947 | 10675836 | ID=Msa0149820-mRNA-1:cds;Parent=Msa0149820-mRNA-1 |
| chr1_4 | CDS | 10675444 | 10675620 | 10675444 | ID=Msa0149820-mRNA-1:cds;Parent=Msa0149820-mRNA-1 |
| chr1_4 | CDS | 10675228 | 10675354 | 10675228 | ID=Msa0149820-mRNA-1:cds;Parent=Msa0149820-mRNA-1 |
| chr1_4 | CDS | 10674918 | 10675031 | 10674918 | ID=Msa0149820-mRNA-1:cds;Parent=Msa0149820-mRNA-1 |
| chr1_4 | three_prime_UTR | 10674903 | 10674917 | 10674903 | ID=Msa0149820-mRNA-1:three_prime_utr;Parent=Msa0149820-mRNA-1 |
| chr1_4 | three_prime_UTR | 10674716 | 10674774 | 10674716 | ID=Msa0149820-mRNA-1:three_prime_utr;Parent=Msa0149820-mRNA-1 |
| chr1_4 | three_prime_UTR | 10674274 | 10674507 | 10674274 | ID=Msa0149820-mRNA-1:three_prime_utr;Parent=Msa0149820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
