Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152030 | XP_024632725.2 | 84.789 | 710 | 44 | 6 | 1 | 647 | 13 | 721 | 0.0 | 1214 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152030 | sp|Q9SY66|FRS11_ARATH | 34.581 | 561 | 295 | 9 | 50 | 542 | 48 | 604 | 1.49e-108 | 345 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152030 | A0A2U1NDE9 | 53.163 | 664 | 260 | 9 | 21 | 646 | 10 | 660 | 0.0 | 686 |
Gene ID | Type | Classification |
---|---|---|
Msa0152030 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0152030 | Msa0152070 | 0.871325 | 7.446633e-67 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152030 | MtrunA17_Chr2g0294841 | 46.828 | 331 | 167 | 4 | 50 | 373 | 45 | 373 | 3.34e-97 | 315 |
Msa0152030 | MtrunA17_Chr2g0294841 | 27.530 | 247 | 108 | 7 | 438 | 614 | 500 | 745 | 1.40e-16 | 84.0 |
Msa0152030 | MtrunA17_Chr2g0276841 | 45.260 | 327 | 173 | 3 | 50 | 372 | 70 | 394 | 1.12e-94 | 306 |
Msa0152030 | MtrunA17_Chr2g0276841 | 32.639 | 144 | 89 | 4 | 403 | 542 | 487 | 626 | 1.89e-16 | 83.2 |
Msa0152030 | MtrunA17_Chr2g0290391 | 32.743 | 565 | 305 | 16 | 50 | 543 | 51 | 611 | 4.07e-92 | 300 |
Msa0152030 | MtrunA17_Chr5g0431001 | 45.509 | 334 | 169 | 4 | 50 | 373 | 61 | 391 | 5.07e-92 | 294 |
Msa0152030 | MtrunA17_Chr1g0198761 | 42.727 | 330 | 176 | 4 | 53 | 372 | 50 | 376 | 9.94e-86 | 284 |
Msa0152030 | MtrunA17_Chr1g0198761 | 29.670 | 273 | 137 | 5 | 404 | 622 | 470 | 741 | 6.58e-30 | 125 |
Msa0152030 | MtrunA17_Chr5g0448761 | 29.289 | 577 | 320 | 15 | 46 | 543 | 56 | 623 | 1.10e-67 | 236 |
Msa0152030 | MtrunA17_Chr1g0202341 | 30.070 | 572 | 311 | 15 | 48 | 543 | 49 | 607 | 9.82e-62 | 218 |
Msa0152030 | MtrunA17_Chr2g0329031 | 27.807 | 579 | 309 | 19 | 56 | 553 | 20 | 570 | 1.87e-57 | 207 |
Msa0152030 | MtrunA17_Chr8g0363841 | 27.350 | 585 | 334 | 17 | 37 | 543 | 4 | 575 | 1.43e-56 | 203 |
Msa0152030 | MtrunA17_Chr2g0296781 | 28.497 | 579 | 296 | 18 | 56 | 543 | 3 | 554 | 1.49e-56 | 204 |
Msa0152030 | MtrunA17_Chr1g0207551 | 28.299 | 576 | 319 | 18 | 45 | 543 | 29 | 587 | 2.70e-54 | 199 |
Msa0152030 | MtrunA17_Chr5g0440451 | 26.471 | 578 | 319 | 15 | 49 | 540 | 42 | 599 | 3.01e-54 | 199 |
Msa0152030 | MtrunA17_Chr2g0324011 | 26.408 | 568 | 339 | 12 | 47 | 543 | 7 | 566 | 1.10e-52 | 191 |
Msa0152030 | MtrunA17_Chr3g0082121 | 31.714 | 350 | 219 | 8 | 32 | 378 | 28 | 360 | 2.85e-50 | 186 |
Msa0152030 | MtrunA17_Chr2g0287651 | 32.177 | 317 | 206 | 6 | 56 | 368 | 81 | 392 | 5.47e-49 | 184 |
Msa0152030 | MtrunA17_Chr6g0477261 | 28.539 | 445 | 239 | 13 | 175 | 543 | 2 | 443 | 5.44e-47 | 176 |
Msa0152030 | MtrunA17_Chr2g0287061 | 26.307 | 593 | 324 | 23 | 18 | 543 | 153 | 699 | 4.85e-46 | 174 |
Msa0152030 | MtrunA17_Chr5g0441581 | 25.822 | 608 | 327 | 18 | 26 | 540 | 2 | 578 | 3.10e-44 | 168 |
Msa0152030 | MtrunA17_Chr3g0080351 | 26.020 | 588 | 321 | 17 | 45 | 549 | 71 | 627 | 8.02e-44 | 168 |
Msa0152030 | MtrunA17_Chr5g0448511 | 28.571 | 392 | 202 | 11 | 222 | 540 | 6 | 392 | 9.95e-43 | 162 |
Msa0152030 | MtrunA17_Chr1g0203051 | 29.969 | 327 | 220 | 6 | 45 | 368 | 74 | 394 | 1.04e-42 | 163 |
Msa0152030 | MtrunA17_Chr3g0118611 | 29.243 | 383 | 203 | 11 | 225 | 540 | 115 | 496 | 5.70e-42 | 162 |
Msa0152030 | MtrunA17_Chr6g0458391 | 31.707 | 328 | 191 | 9 | 47 | 368 | 222 | 522 | 4.74e-40 | 157 |
Msa0152030 | MtrunA17_Chr6g0458391 | 35.294 | 153 | 81 | 6 | 23 | 171 | 69 | 207 | 5.28e-12 | 69.3 |
Msa0152030 | MtrunA17_Chr1g0164591 | 32.218 | 239 | 152 | 4 | 141 | 378 | 11 | 240 | 1.07e-37 | 142 |
Msa0152030 | MtrunA17_Chr1g0196541 | 29.063 | 320 | 211 | 7 | 56 | 371 | 3 | 310 | 3.28e-36 | 145 |
Msa0152030 | MtrunA17_Chr1g0203721 | 28.487 | 337 | 200 | 8 | 52 | 368 | 65 | 380 | 9.48e-36 | 144 |
Msa0152030 | MtrunA17_Chr7g0258861 | 30.450 | 289 | 189 | 6 | 47 | 330 | 7 | 288 | 7.73e-33 | 128 |
Msa0152030 | MtrunA17_Chr5g0402481 | 67.778 | 90 | 23 | 2 | 554 | 637 | 1 | 90 | 8.08e-32 | 119 |
Msa0152030 | MtrunA17_Chr2g0291581 | 24.479 | 576 | 326 | 20 | 50 | 543 | 71 | 619 | 6.01e-30 | 125 |
Msa0152030 | MtrunA17_Chr2g0291591 | 26.757 | 370 | 221 | 16 | 25 | 374 | 41 | 380 | 1.76e-27 | 117 |
Msa0152030 | MtrunA17_Chr3g0081281 | 44.086 | 93 | 52 | 0 | 192 | 284 | 1 | 93 | 7.80e-20 | 84.7 |
Msa0152030 | MtrunA17_Chr7g0233911 | 40.179 | 112 | 60 | 2 | 49 | 158 | 33 | 139 | 1.83e-16 | 79.0 |
Msa0152030 | MtrunA17_Chr1g0171741 | 30.973 | 113 | 73 | 2 | 56 | 167 | 139 | 247 | 1.40e-14 | 74.3 |
Msa0152030 | MtrunA17_Chr2g0329421 | 34.586 | 133 | 74 | 4 | 29 | 157 | 6 | 129 | 3.16e-14 | 72.4 |
Msa0152030 | MtrunA17_Chr4g0075451 | 25.114 | 219 | 141 | 6 | 151 | 366 | 6 | 204 | 5.47e-13 | 69.3 |
Msa0152030 | MtrunA17_Chr2g0329361 | 29.787 | 141 | 91 | 3 | 39 | 176 | 50 | 185 | 4.31e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152030 | AT1G10240.2 | 34.581 | 561 | 295 | 9 | 50 | 542 | 48 | 604 | 1.51e-109 | 345 |
Msa0152030 | AT1G10240.1 | 34.581 | 561 | 295 | 9 | 50 | 542 | 48 | 604 | 1.51e-109 | 345 |
Msa0152030 | AT5G28530.3 | 31.886 | 599 | 324 | 15 | 23 | 540 | 17 | 612 | 4.89e-97 | 312 |
Msa0152030 | AT5G28530.2 | 31.886 | 599 | 324 | 15 | 23 | 540 | 17 | 612 | 4.89e-97 | 312 |
Msa0152030 | AT5G28530.1 | 31.509 | 603 | 325 | 14 | 23 | 540 | 17 | 616 | 1.68e-96 | 311 |
Msa0152030 | AT5G28530.5 | 29.711 | 589 | 287 | 17 | 23 | 540 | 17 | 549 | 2.66e-74 | 251 |
Msa0152030 | AT5G28530.4 | 29.342 | 593 | 288 | 16 | 23 | 540 | 17 | 553 | 7.37e-74 | 249 |
Msa0152030 | AT4G38180.1 | 29.549 | 599 | 333 | 14 | 23 | 543 | 45 | 632 | 1.66e-71 | 247 |
Msa0152030 | AT1G76320.3 | 26.998 | 563 | 307 | 17 | 56 | 540 | 3 | 539 | 3.88e-54 | 197 |
Msa0152030 | AT1G76320.2 | 26.998 | 563 | 307 | 17 | 56 | 540 | 3 | 539 | 4.18e-54 | 197 |
Msa0152030 | AT1G76320.1 | 26.998 | 563 | 307 | 17 | 56 | 540 | 3 | 539 | 4.36e-54 | 197 |
Msa0152030 | AT1G76320.4 | 26.998 | 563 | 307 | 17 | 56 | 540 | 3 | 539 | 4.36e-54 | 197 |
Msa0152030 | AT2G27110.2 | 25.331 | 604 | 350 | 13 | 22 | 559 | 24 | 592 | 8.22e-52 | 192 |
Msa0152030 | AT2G27110.1 | 25.331 | 604 | 350 | 13 | 22 | 559 | 24 | 592 | 8.22e-52 | 192 |
Msa0152030 | AT4G15090.1 | 25.926 | 594 | 360 | 14 | 22 | 543 | 22 | 607 | 1.42e-51 | 191 |
Msa0152030 | AT4G15090.5 | 25.926 | 594 | 360 | 14 | 22 | 543 | 22 | 607 | 1.42e-51 | 191 |
Msa0152030 | AT4G15090.3 | 25.926 | 594 | 360 | 14 | 22 | 543 | 22 | 607 | 1.42e-51 | 191 |
Msa0152030 | AT4G15090.2 | 25.926 | 594 | 360 | 14 | 22 | 543 | 22 | 607 | 1.42e-51 | 191 |
Msa0152030 | AT4G15090.4 | 25.926 | 594 | 360 | 14 | 22 | 543 | 22 | 607 | 1.42e-51 | 191 |
Msa0152030 | AT3G22170.2 | 24.842 | 632 | 343 | 16 | 15 | 547 | 22 | 620 | 2.23e-45 | 173 |
Msa0152030 | AT3G22170.1 | 24.842 | 632 | 343 | 16 | 15 | 547 | 22 | 620 | 2.23e-45 | 173 |
Msa0152030 | AT3G06250.2 | 26.254 | 598 | 321 | 22 | 29 | 553 | 165 | 715 | 3.13e-43 | 166 |
Msa0152030 | AT3G06250.1 | 26.254 | 598 | 321 | 22 | 29 | 553 | 165 | 715 | 3.13e-43 | 166 |
Msa0152030 | AT3G06250.3 | 26.254 | 598 | 321 | 22 | 29 | 553 | 165 | 715 | 3.13e-43 | 166 |
Msa0152030 | AT2G27110.3 | 27.387 | 398 | 222 | 7 | 228 | 559 | 51 | 447 | 1.36e-42 | 164 |
Msa0152030 | AT5G18960.2 | 25.442 | 566 | 302 | 18 | 49 | 543 | 210 | 726 | 6.93e-39 | 154 |
Msa0152030 | AT5G18960.1 | 25.442 | 566 | 302 | 18 | 49 | 543 | 210 | 726 | 6.93e-39 | 154 |
Msa0152030 | AT4G38170.1 | 30.081 | 369 | 187 | 14 | 260 | 558 | 45 | 412 | 9.83e-36 | 142 |
Msa0152030 | AT1G52520.1 | 23.993 | 596 | 336 | 19 | 37 | 543 | 69 | 636 | 1.46e-35 | 143 |
Msa0152030 | AT4G19990.7 | 24.561 | 627 | 332 | 19 | 12 | 549 | 3 | 577 | 4.20e-35 | 142 |
Msa0152030 | AT4G19990.3 | 25.253 | 594 | 309 | 18 | 45 | 549 | 16 | 563 | 7.91e-35 | 141 |
Msa0152030 | AT4G19990.4 | 25.253 | 594 | 309 | 18 | 45 | 549 | 16 | 563 | 7.91e-35 | 141 |
Msa0152030 | AT4G19990.6 | 25.253 | 594 | 309 | 18 | 45 | 549 | 16 | 563 | 1.32e-34 | 140 |
Msa0152030 | AT4G19990.2 | 25.253 | 594 | 309 | 18 | 45 | 549 | 16 | 563 | 1.32e-34 | 140 |
Msa0152030 | AT4G19990.5 | 25.253 | 594 | 309 | 18 | 45 | 549 | 16 | 563 | 1.43e-34 | 140 |
Msa0152030 | AT2G32250.5 | 29.012 | 324 | 178 | 10 | 53 | 373 | 41 | 315 | 9.37e-32 | 132 |
Msa0152030 | AT2G32250.2 | 29.012 | 324 | 178 | 10 | 53 | 373 | 41 | 315 | 1.04e-31 | 132 |
Msa0152030 | AT2G32250.4 | 29.012 | 324 | 178 | 10 | 53 | 373 | 41 | 315 | 1.04e-31 | 132 |
Msa0152030 | AT2G32250.6 | 29.012 | 324 | 178 | 10 | 53 | 373 | 41 | 315 | 1.06e-31 | 132 |
Msa0152030 | AT2G32250.1 | 29.012 | 324 | 178 | 10 | 53 | 373 | 41 | 315 | 1.06e-31 | 132 |
Msa0152030 | AT2G32250.3 | 29.012 | 324 | 178 | 10 | 53 | 373 | 41 | 315 | 1.06e-31 | 132 |
Msa0152030 | AT2G32250.8 | 28.972 | 321 | 176 | 10 | 56 | 373 | 3 | 274 | 1.73e-31 | 131 |
Msa0152030 | AT2G32250.7 | 28.972 | 321 | 176 | 10 | 56 | 373 | 3 | 274 | 2.08e-31 | 130 |
Msa0152030 | AT4G19990.1 | 24.706 | 510 | 263 | 15 | 115 | 549 | 43 | 506 | 1.48e-28 | 122 |
Msa0152030 | AT1G80010.1 | 25.000 | 384 | 207 | 12 | 30 | 368 | 65 | 412 | 2.96e-25 | 111 |
Msa0152030 | AT3G59470.3 | 35.088 | 114 | 61 | 4 | 49 | 158 | 69 | 173 | 3.82e-12 | 67.4 |
Msa0152030 | AT3G59470.1 | 35.088 | 114 | 61 | 4 | 49 | 158 | 69 | 173 | 3.82e-12 | 67.4 |
Msa0152030 | AT3G59470.2 | 35.088 | 114 | 61 | 4 | 49 | 158 | 81 | 185 | 5.02e-12 | 67.0 |
Find 86 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACAAAAGCATAAAGTCTTA+TGG | 0.240767 | 1_4:+14374768 | Msa0152030:CDS |
GTTGCAAGCACTTTGAGTTT+TGG | 0.246090 | 1_4:+14374813 | Msa0152030:CDS |
CTATTTCGTTGTTCTTTAGA+TGG | 0.251501 | 1_4:-14373447 | None:intergenic |
ATTCTTCCAATTTGAATTTA+CGG | 0.258879 | 1_4:+14373854 | Msa0152030:CDS |
TCGATCTTTATCCCCTTTAG+AGG | 0.263472 | 1_4:+14374613 | Msa0152030:CDS |
TCAATAACCTGCCACTCTTC+TGG | 0.264829 | 1_4:-14373537 | None:intergenic |
ATATGCTTTCAAGAAATTTC+AGG | 0.280698 | 1_4:+14374661 | Msa0152030:CDS |
AAAGACTAGAAAATATATTT+TGG | 0.283353 | 1_4:+14373889 | Msa0152030:CDS |
TATCAACCGTAAATTCAAAT+TGG | 0.296445 | 1_4:-14373860 | None:intergenic |
TGATCAGTAATGATTGTCTT+TGG | 0.301722 | 1_4:-14374245 | None:intergenic |
GGAAGATCAGAGAGCATAAA+TGG | 0.307176 | 1_4:+14374372 | Msa0152030:CDS |
AATTGAGAACCCACTCCTTT+TGG | 0.307636 | 1_4:-14373331 | None:intergenic |
AATACTTATAATATGCCTTT+TGG | 0.320115 | 1_4:+14373984 | Msa0152030:CDS |
AGAAAACACTGCCCTATAAA+AGG | 0.321677 | 1_4:-14373270 | None:intergenic |
TAGGTTGAGAATCACAAATT+TGG | 0.324904 | 1_4:+14373137 | Msa0152030:intron |
ATCCTACCGCAAAATTTCTA+AGG | 0.334787 | 1_4:+14373617 | Msa0152030:CDS |
GTCTTGCCATTGAGGACATT+GGG | 0.350598 | 1_4:+14374540 | Msa0152030:CDS |
TTACCACATGGTTCATTGTT+TGG | 0.355616 | 1_4:-14373177 | None:intergenic |
TGTAAACTTGCTCCTCTAAA+GGG | 0.366834 | 1_4:-14374625 | None:intergenic |
CACGGCAGAACAATATTGTT+TGG | 0.372693 | 1_4:+14374029 | Msa0152030:CDS |
AGCATCATATTTACTTCAAC+CGG | 0.383467 | 1_4:-14374941 | None:intergenic |
ACAAAAGCATAAAGTCTTAT+GGG | 0.389182 | 1_4:+14374769 | Msa0152030:CDS |
CAAGCAAATAATGCGTGTTA+TGG | 0.401498 | 1_4:+14373686 | Msa0152030:CDS |
CACATTACTGCTAAATTTAG+TGG | 0.402980 | 1_4:+14374335 | Msa0152030:CDS |
TGAACATGACTTTCTTTGTC+CGG | 0.414585 | 1_4:-14375142 | None:intergenic |
CCAACGTAATGGCAAGTAAC+TGG | 0.415269 | 1_4:-14374897 | None:intergenic |
GTATTCTCCACATTCTCAAT+AGG | 0.415640 | 1_4:-14374977 | None:intergenic |
TTAGTGGGCATGACAACAAC+TGG | 0.419458 | 1_4:+14374351 | Msa0152030:CDS |
GAGAATTATGCCAAAAGGAG+TGG | 0.432756 | 1_4:+14373321 | Msa0152030:CDS |
TTGTAAACTTGCTCCTCTAA+AGG | 0.433547 | 1_4:-14374626 | None:intergenic |
GGTCTTGCCATTGAGGACAT+TGG | 0.445560 | 1_4:+14374539 | Msa0152030:CDS |
GTTAATCTAATAGATGTTGC+TGG | 0.445620 | 1_4:+14372202 | None:intergenic |
GCACAATGTTACAACTTGTC+CGG | 0.470462 | 1_4:+14375123 | Msa0152030:CDS |
AAACAGTGTCTACATTTCAA+TGG | 0.471539 | 1_4:+14374072 | Msa0152030:CDS |
TTTATGAGAATTATGCCAAA+AGG | 0.477231 | 1_4:+14373316 | Msa0152030:CDS |
TTTGAATTGTACCAACGGTA+TGG | 0.489975 | 1_4:+14373927 | Msa0152030:CDS |
TGCATTTGATACTACTTACA+AGG | 0.493228 | 1_4:+14373959 | Msa0152030:CDS |
CCCAAAACAAAACGATCAAA+AGG | 0.494525 | 1_4:+14375046 | Msa0152030:CDS |
TCTCAAAACAATCTTTATGA+AGG | 0.497920 | 1_4:-14374868 | None:intergenic |
CCGCCAAGGTCTAATACAAA+AGG | 0.501842 | 1_4:+14375019 | Msa0152030:CDS |
TCAGTAATGATTGTCTTTGG+AGG | 0.504936 | 1_4:-14374242 | None:intergenic |
TTGCATCCACATCTCGAAGA+TGG | 0.506363 | 1_4:-14373471 | None:intergenic |
ATACCATGTTGGATACATAC+AGG | 0.511907 | 1_4:+14374579 | Msa0152030:CDS |
TTAGGTTGGTCTTGCCATTG+AGG | 0.515284 | 1_4:+14374532 | Msa0152030:intron |
CCATGTGGTAATTCAGAAAG+TGG | 0.515343 | 1_4:+14373189 | Msa0152030:CDS |
AGCCAACAATCACCAAGAAA+AGG | 0.519408 | 1_4:+14375164 | Msa0152030:CDS |
ATTCATCAAGATAACATGAA+TGG | 0.519717 | 1_4:+14373780 | Msa0152030:CDS |
AGTGGGTTCTCAATTAGAAA+AGG | 0.520009 | 1_4:+14373339 | Msa0152030:CDS |
ACATTACTGCTAAATTTAGT+GGG | 0.527133 | 1_4:+14374336 | Msa0152030:CDS |
TATTTGCTTGACTGAAAGAT+CGG | 0.528838 | 1_4:-14373673 | None:intergenic |
TCGTGATGAATTTCAAAGAC+CGG | 0.536511 | 1_4:+14374922 | Msa0152030:CDS |
AAAACGATCAAAAGGAGGAA+TGG | 0.539810 | 1_4:+14375054 | Msa0152030:CDS |
TCATCACGACACCAACGTAA+TGG | 0.541318 | 1_4:-14374908 | None:intergenic |
TTAATCTAATAGATGTTGCT+GGG | 0.547736 | 1_4:+14372203 | None:intergenic |
TACAATTCAAAACAATGAGA+TGG | 0.553123 | 1_4:-14373915 | None:intergenic |
AATTTCAGGAGGAGTTTGAG+AGG | 0.553644 | 1_4:+14374675 | Msa0152030:CDS |
ATTTACTGTGAAATATTACA+AGG | 0.556334 | 1_4:+14374736 | Msa0152030:CDS |
AGGAAGTGCACTTGATCTGA+AGG | 0.561598 | 1_4:-14373591 | None:intergenic |
CCACTTTCTGAATTACCACA+TGG | 0.566899 | 1_4:-14373189 | None:intergenic |
GCAATATCTTGAGTCATCCA+TGG | 0.568954 | 1_4:-14374272 | None:intergenic |
CGTAATGGCAAGTAACTGGT+TGG | 0.574471 | 1_4:-14374893 | None:intergenic |
ACAATTACATCATACCATGT+TGG | 0.575122 | 1_4:+14374568 | Msa0152030:CDS |
ATTTCAGGAGGAGTTTGAGA+GGG | 0.577997 | 1_4:+14374676 | Msa0152030:CDS |
AGGAGGACCTATTGAGAATG+TGG | 0.586619 | 1_4:+14374970 | Msa0152030:CDS |
TCATTACTGATCAAGATCCA+TGG | 0.589067 | 1_4:+14374255 | Msa0152030:CDS |
ATCTTCGAGATGTGGATGCA+AGG | 0.590294 | 1_4:+14373473 | Msa0152030:CDS |
GTAAATATGATGCTTAGTGA+AGG | 0.591344 | 1_4:+14374950 | Msa0152030:CDS |
GGTTCTCAATTAGAAAAGGT+AGG | 0.597383 | 1_4:+14373343 | Msa0152030:CDS |
AGAATTATGCCAAAAGGAGT+GGG | 0.597719 | 1_4:+14373322 | Msa0152030:CDS |
TTTGTTGGAGTCGACAATCA+CGG | 0.607351 | 1_4:+14374011 | Msa0152030:CDS |
TGCTTTCAAGAAATTTCAGG+AGG | 0.608867 | 1_4:+14374664 | Msa0152030:CDS |
TTATGGGACGGTGATGTGGT+TGG | 0.608893 | 1_4:+14374785 | Msa0152030:CDS |
AATAGACCATCTTCGAGATG+TGG | 0.610642 | 1_4:+14373465 | Msa0152030:CDS |
TACCATGTTGGATACATACA+GGG | 0.612968 | 1_4:+14374580 | Msa0152030:CDS |
GTAAACTTGCTCCTCTAAAG+GGG | 0.614038 | 1_4:-14374624 | None:intergenic |
AATATGATGCTTAGTGAAGG+AGG | 0.615302 | 1_4:+14374953 | Msa0152030:CDS |
AGTCTTATGGGACGGTGATG+TGG | 0.620719 | 1_4:+14374781 | Msa0152030:CDS |
CAACAGCATCTCCATACCGT+TGG | 0.623428 | 1_4:-14373938 | None:intergenic |
CCAGTTACTTGCCATTACGT+TGG | 0.636509 | 1_4:+14374897 | Msa0152030:CDS |
AAGCATAAAGTCTTATGGGA+CGG | 0.643257 | 1_4:+14374773 | Msa0152030:CDS |
TTTCTAAGGAAGAAGAGAAG+CGG | 0.644788 | 1_4:+14373631 | Msa0152030:CDS |
AAAACAAAACGATCAAAAGG+AGG | 0.648569 | 1_4:+14375049 | Msa0152030:CDS |
TCCCCTGTATGTATCCAACA+TGG | 0.678677 | 1_4:-14374582 | None:intergenic |
AAGGTAGTAGATCATGATTG+TGG | 0.693617 | 1_4:-14373572 | None:intergenic |
CTTCCAAACAATGAACCATG+TGG | 0.706506 | 1_4:+14373174 | Msa0152030:CDS |
ACCATGTTGGATACATACAG+GGG | 0.713854 | 1_4:+14374581 | Msa0152030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGTTAATACAATTATTA+TGG | + | chr1_4:14372983-14373002 | Msa0152030:intron | 10.0% |
!! | TGATAATATATTCAATTATG+TGG | - | chr1_4:14372267-14372286 | None:intergenic | 15.0% |
!! | ATATTATCACATTCAAATAT+AGG | + | chr1_4:14372278-14372297 | Msa0152030:intron | 15.0% |
!!! | AGAAAAATCCTTTTATAAAA+CGG | - | chr1_4:14372384-14372403 | None:intergenic | 15.0% |
!! | GTGAAATAAAAAAATGATTA+AGG | - | chr1_4:14372744-14372763 | None:intergenic | 15.0% |
!! | AAAAAACAATTGAAAACAAA+AGG | - | chr1_4:14372841-14372860 | None:intergenic | 15.0% |
!!! | TTTGAAACATCATATTAAAA+GGG | - | chr1_4:14372963-14372982 | None:intergenic | 15.0% |
!!! | TTTTGAAACATCATATTAAA+AGG | - | chr1_4:14372964-14372983 | None:intergenic | 15.0% |
!!! | AAAGACTAGAAAATATATTT+TGG | + | chr1_4:14373889-14373908 | Msa0152030:CDS | 15.0% |
!! | AATCATATAGAAAATACATT+GGG | - | chr1_4:14374179-14374198 | None:intergenic | 15.0% |
!!! | ATTTATTCTAAATTTTAGGT+TGG | + | chr1_4:14374518-14374537 | Msa0152030:intron | 15.0% |
!!! | TTTAGAAACCGTTTTATAAA+AGG | + | chr1_4:14372373-14372392 | Msa0152030:intron | 20.0% |
!!! | AAATCAATTTTCAAGAAAGT+GGG | - | chr1_4:14372484-14372503 | None:intergenic | 20.0% |
!!! | AAAATCAATTTTCAAGAAAG+TGG | - | chr1_4:14372485-14372504 | None:intergenic | 20.0% |
!! | AAAGTACAAAAACAGAAAAA+GGG | - | chr1_4:14372907-14372926 | None:intergenic | 20.0% |
!!! | AAAAGTACAAAAACAGAAAA+AGG | - | chr1_4:14372908-14372927 | None:intergenic | 20.0% |
!! | ATAAAAGAATCTACAACAAT+GGG | - | chr1_4:14372931-14372950 | None:intergenic | 20.0% |
!! | ACAAGTAAGAATTTACTTAT+GGG | - | chr1_4:14373023-14373042 | None:intergenic | 20.0% |
!! | AACAAGTAAGAATTTACTTA+TGG | - | chr1_4:14373024-14373043 | None:intergenic | 20.0% |
!! | TACATAAATAAATTGAAAGC+AGG | - | chr1_4:14373119-14373138 | None:intergenic | 20.0% |
!! | TGCTTTCAATTTATTTATGT+AGG | + | chr1_4:14373118-14373137 | Msa0152030:intron | 20.0% |
!!! | GTAGGTTTGTTAATAAAAAT+GGG | + | chr1_4:14373361-14373380 | Msa0152030:CDS | 20.0% |
!! | ATTCTTCCAATTTGAATTTA+CGG | + | chr1_4:14373854-14373873 | Msa0152030:CDS | 20.0% |
!!! | AATACTTATAATATGCCTTT+TGG | + | chr1_4:14373984-14374003 | Msa0152030:CDS | 20.0% |
!! | CAATCATATAGAAAATACAT+TGG | - | chr1_4:14374180-14374199 | None:intergenic | 20.0% |
!! | ATTTACTGTGAAATATTACA+AGG | + | chr1_4:14374736-14374755 | Msa0152030:CDS | 20.0% |
!!! | ATTTAATGCTCCACTTTTAT+AGG | + | chr1_4:14372435-14372454 | Msa0152030:intron | 25.0% |
!!! | TTTAATGCTCCACTTTTATA+GGG | + | chr1_4:14372436-14372455 | Msa0152030:intron | 25.0% |
!!! | AATCAATTTTCAAGAAAGTG+GGG | - | chr1_4:14372483-14372502 | None:intergenic | 25.0% |
! | AAATAATATCAGATGAGAGA+AGG | - | chr1_4:14372511-14372530 | None:intergenic | 25.0% |
! | AACAAGAATAAAACCTGAAA+AGG | - | chr1_4:14372561-14372580 | None:intergenic | 25.0% |
!!! | AGCATAATAAGTTTTAGTGT+TGG | - | chr1_4:14372611-14372630 | None:intergenic | 25.0% |
! | GATAAAAGAATCTACAACAA+TGG | - | chr1_4:14372932-14372951 | None:intergenic | 25.0% |
! | TAAATAAATTGAAAGCAGGA+AGG | - | chr1_4:14373115-14373134 | None:intergenic | 25.0% |
!! | AACGATTTTGAACCTTTTAT+AGG | + | chr1_4:14373258-14373277 | Msa0152030:CDS | 25.0% |
!! | ACGATTTTGAACCTTTTATA+GGG | + | chr1_4:14373259-14373278 | Msa0152030:CDS | 25.0% |
! | TTTATGAGAATTATGCCAAA+AGG | + | chr1_4:14373316-14373335 | Msa0152030:CDS | 25.0% |
!!! | GGTAGGTTTGTTAATAAAAA+TGG | + | chr1_4:14373360-14373379 | Msa0152030:CDS | 25.0% |
! | ATAAAAATGGGATAATGCAT+AGG | + | chr1_4:14373373-14373392 | Msa0152030:CDS | 25.0% |
!!! | GGATCTTGAATTTTTTTATC+AGG | - | chr1_4:14373429-14373448 | None:intergenic | 25.0% |
! | CTTGAGAAAAATGTAAAACA+TGG | + | chr1_4:14373711-14373730 | Msa0152030:CDS | 25.0% |
! | ATTCATCAAGATAACATGAA+TGG | + | chr1_4:14373780-14373799 | Msa0152030:CDS | 25.0% |
! | TATCAACCGTAAATTCAAAT+TGG | - | chr1_4:14373863-14373882 | None:intergenic | 25.0% |
! | TACAATTCAAAACAATGAGA+TGG | - | chr1_4:14373918-14373937 | None:intergenic | 25.0% |
!!! | ATTGTTTTGAATTGTACCAA+CGG | + | chr1_4:14373922-14373941 | Msa0152030:CDS | 25.0% |
!!! | TATACAAAAAGCATGTTTTG+TGG | - | chr1_4:14374312-14374331 | None:intergenic | 25.0% |
!!! | CAAAACATGCTTTTTGTATA+TGG | + | chr1_4:14374312-14374331 | Msa0152030:CDS | 25.0% |
! | ACATTACTGCTAAATTTAGT+GGG | + | chr1_4:14374336-14374355 | Msa0152030:CDS | 25.0% |
! | ATCACAAAACATTAACAAGA+TGG | - | chr1_4:14374482-14374501 | None:intergenic | 25.0% |
! | ATATGCTTTCAAGAAATTTC+AGG | + | chr1_4:14374661-14374680 | Msa0152030:CDS | 25.0% |
!! | ACAAAAGCATAAAGTCTTAT+GGG | + | chr1_4:14374769-14374788 | Msa0152030:CDS | 25.0% |
! | TCTCAAAACAATCTTTATGA+AGG | - | chr1_4:14374871-14374890 | None:intergenic | 25.0% |
! | GAAGACTTTAGATAAAAAAC+AGG | - | chr1_4:14375223-14375242 | None:intergenic | 25.0% |
TTACGTCCAAACCAAATTTA+CGG | - | chr1_4:14372310-14372329 | None:intergenic | 30.0% | |
ACAACCCATTTATACTCATA+TGG | + | chr1_4:14372694-14372713 | Msa0152030:intron | 30.0% | |
GCAACCATATGAGTATAAAT+GGG | - | chr1_4:14372701-14372720 | None:intergenic | 30.0% | |
AGCAACCATATGAGTATAAA+TGG | - | chr1_4:14372702-14372721 | None:intergenic | 30.0% | |
ATTAAGGAATTAACTCACTC+AGG | - | chr1_4:14372728-14372747 | None:intergenic | 30.0% | |
ACATCATATTAAAAGGGAAC+AGG | - | chr1_4:14372957-14372976 | None:intergenic | 30.0% | |
! | TAGGTTGAGAATCACAAATT+TGG | + | chr1_4:14373137-14373156 | Msa0152030:intron | 30.0% |
CTATTTCGTTGTTCTTTAGA+TGG | - | chr1_4:14373450-14373469 | None:intergenic | 30.0% | |
! | CTTCTTCCTTAGAAATTTTG+CGG | - | chr1_4:14373626-14373645 | None:intergenic | 30.0% |
TATTTGCTTGACTGAAAGAT+CGG | - | chr1_4:14373676-14373695 | None:intergenic | 30.0% | |
! | ACAACTTTGTAAGTTTTCCA+AGG | + | chr1_4:14373821-14373840 | Msa0152030:CDS | 30.0% |
TGCATTTGATACTACTTACA+AGG | + | chr1_4:14373959-14373978 | Msa0152030:CDS | 30.0% | |
AAACAGTGTCTACATTTCAA+TGG | + | chr1_4:14374072-14374091 | Msa0152030:CDS | 30.0% | |
TGATCAGTAATGATTGTCTT+TGG | - | chr1_4:14374248-14374267 | None:intergenic | 30.0% | |
CACATTACTGCTAAATTTAG+TGG | + | chr1_4:14374335-14374354 | Msa0152030:CDS | 30.0% | |
ACAATTACATCATACCATGT+TGG | + | chr1_4:14374568-14374587 | Msa0152030:CDS | 30.0% | |
! | CACAAAAGCATAAAGTCTTA+TGG | + | chr1_4:14374768-14374787 | Msa0152030:CDS | 30.0% |
AGCATCATATTTACTTCAAC+CGG | - | chr1_4:14374944-14374963 | None:intergenic | 30.0% | |
GTAAATATGATGCTTAGTGA+AGG | + | chr1_4:14374950-14374969 | Msa0152030:CDS | 30.0% | |
ACTTAATTAAAAATCCGCCA+AGG | + | chr1_4:14375005-14375024 | Msa0152030:CDS | 30.0% | |
!!! | CCTTTTGATCGTTTTGTTTT+GGG | - | chr1_4:14375049-14375068 | None:intergenic | 30.0% |
!!! | TCCTTTTGATCGTTTTGTTT+TGG | - | chr1_4:14375050-14375069 | None:intergenic | 30.0% |
AAAACAAAACGATCAAAAGG+AGG | + | chr1_4:14375049-14375068 | Msa0152030:CDS | 30.0% | |
! | ATCTTCATTCTTCCTTTTCT+TGG | - | chr1_4:14375179-14375198 | None:intergenic | 30.0% |
ATAGGTGTTTCCCGTAAATT+TGG | + | chr1_4:14372296-14372315 | Msa0152030:intron | 35.0% | |
TGTTTCCCGTAAATTTGGTT+TGG | + | chr1_4:14372301-14372320 | Msa0152030:intron | 35.0% | |
TACGTCCAAACCAAATTTAC+GGG | - | chr1_4:14372309-14372328 | None:intergenic | 35.0% | |
TGCAAGATTGCACAAGATAA+GGG | + | chr1_4:14372410-14372429 | Msa0152030:intron | 35.0% | |
GAATAAAACCTGAAAAGGTG+AGG | - | chr1_4:14372556-14372575 | None:intergenic | 35.0% | |
!!! | TTAGTGTTGGTGTGTTTTAG+TGG | - | chr1_4:14372598-14372617 | None:intergenic | 35.0% |
! | ACTTTCTTCTTCAGCTTTGA+AGG | + | chr1_4:14372639-14372658 | Msa0152030:intron | 35.0% |
AAGGACTTTATGCAAGGATA+TGG | + | chr1_4:14372658-14372677 | Msa0152030:intron | 35.0% | |
! | TTCTTTTCCCATTGCAGTTT+CGG | + | chr1_4:14372865-14372884 | Msa0152030:intron | 35.0% |
AACAAAACCGAAACTGCAAT+GGG | - | chr1_4:14372875-14372894 | None:intergenic | 35.0% | |
AAACAAAACCGAAACTGCAA+TGG | - | chr1_4:14372876-14372895 | None:intergenic | 35.0% | |
AAAGCAGGAAGGTTAAAATG+TGG | - | chr1_4:14373104-14373123 | None:intergenic | 35.0% | |
TTACCACATGGTTCATTGTT+TGG | - | chr1_4:14373180-14373199 | None:intergenic | 35.0% | |
AGAAAACACTGCCCTATAAA+AGG | - | chr1_4:14373273-14373292 | None:intergenic | 35.0% | |
AGAATTATGCCAAAAGGAGT+GGG | + | chr1_4:14373322-14373341 | Msa0152030:CDS | 35.0% | |
! | AGTGGGTTCTCAATTAGAAA+AGG | + | chr1_4:14373339-14373358 | Msa0152030:CDS | 35.0% |
GGTTCTCAATTAGAAAAGGT+AGG | + | chr1_4:14373343-14373362 | Msa0152030:CDS | 35.0% | |
! | TTTTATCAGGAAATCCTCCA+CGG | - | chr1_4:14373416-14373435 | None:intergenic | 35.0% |
! | CTCTTCTGGAAAAATCTCAA+AGG | - | chr1_4:14373526-14373545 | None:intergenic | 35.0% |
! | TTGAGATTTTTCCAGAAGAG+TGG | + | chr1_4:14373526-14373545 | Msa0152030:CDS | 35.0% |
AAGGTAGTAGATCATGATTG+TGG | - | chr1_4:14373575-14373594 | None:intergenic | 35.0% | |
ATCCTACCGCAAAATTTCTA+AGG | + | chr1_4:14373617-14373636 | Msa0152030:CDS | 35.0% | |
! | TTCCTTAGAAATTTTGCGGT+AGG | - | chr1_4:14373622-14373641 | None:intergenic | 35.0% |
! | TTTCTAAGGAAGAAGAGAAG+CGG | + | chr1_4:14373631-14373650 | Msa0152030:CDS | 35.0% |
CAAGCAAATAATGCGTGTTA+TGG | + | chr1_4:14373686-14373705 | Msa0152030:CDS | 35.0% | |
! | GAAGAATGAGTTTTCTTCCT+TGG | - | chr1_4:14373841-14373860 | None:intergenic | 35.0% |
TTTGAATTGTACCAACGGTA+TGG | + | chr1_4:14373927-14373946 | Msa0152030:CDS | 35.0% | |
! | ATGCCTTTTGGCATTTTTGT+TGG | + | chr1_4:14373996-14374015 | Msa0152030:CDS | 35.0% |
ACTCCAACAAAAATGCCAAA+AGG | - | chr1_4:14374002-14374021 | None:intergenic | 35.0% | |
CATGAGAGTAACAAAAGTCT+GGG | - | chr1_4:14374216-14374235 | None:intergenic | 35.0% | |
TCATGAGAGTAACAAAAGTC+TGG | - | chr1_4:14374217-14374236 | None:intergenic | 35.0% | |
TCAGTAATGATTGTCTTTGG+AGG | - | chr1_4:14374245-14374264 | None:intergenic | 35.0% | |
TCATTACTGATCAAGATCCA+TGG | + | chr1_4:14374255-14374274 | Msa0152030:CDS | 35.0% | |
!! | CAAAAAGCATGTTTTGTGGA+TGG | - | chr1_4:14374308-14374327 | None:intergenic | 35.0% |
!! | GAGATGAAGTAAAGCGTTTT+AGG | - | chr1_4:14374401-14374420 | None:intergenic | 35.0% |
ATACCATGTTGGATACATAC+AGG | + | chr1_4:14374579-14374598 | Msa0152030:CDS | 35.0% | |
TACCATGTTGGATACATACA+GGG | + | chr1_4:14374580-14374599 | Msa0152030:CDS | 35.0% | |
! | TGTAAACTTGCTCCTCTAAA+GGG | - | chr1_4:14374628-14374647 | None:intergenic | 35.0% |
! | TTGTAAACTTGCTCCTCTAA+AGG | - | chr1_4:14374629-14374648 | None:intergenic | 35.0% |
TGCTTTCAAGAAATTTCAGG+AGG | + | chr1_4:14374664-14374683 | Msa0152030:CDS | 35.0% | |
! | AAGCATAAAGTCTTATGGGA+CGG | + | chr1_4:14374773-14374792 | Msa0152030:CDS | 35.0% |
!! | TTGCAAGCACTTTGAGTTTT+GGG | + | chr1_4:14374814-14374833 | Msa0152030:CDS | 35.0% |
TCGTGATGAATTTCAAAGAC+CGG | + | chr1_4:14374922-14374941 | Msa0152030:CDS | 35.0% | |
AATATGATGCTTAGTGAAGG+AGG | + | chr1_4:14374953-14374972 | Msa0152030:CDS | 35.0% | |
GTATTCTCCACATTCTCAAT+AGG | - | chr1_4:14374980-14374999 | None:intergenic | 35.0% | |
CCCAAAACAAAACGATCAAA+AGG | + | chr1_4:14375046-14375065 | Msa0152030:CDS | 35.0% | |
AAAACGATCAAAAGGAGGAA+TGG | + | chr1_4:14375054-14375073 | Msa0152030:CDS | 35.0% | |
!! | CTGTACTTTTTGCAAGAGAA+GGG | + | chr1_4:14375099-14375118 | Msa0152030:CDS | 35.0% |
!! | TGTACTTTTTGCAAGAGAAG+GGG | + | chr1_4:14375100-14375119 | Msa0152030:CDS | 35.0% |
TGAACATGACTTTCTTTGTC+CGG | - | chr1_4:14375145-14375164 | None:intergenic | 35.0% | |
!! | TTCCTTTTCTTGGTGATTGT+TGG | - | chr1_4:14375169-14375188 | None:intergenic | 35.0% |
TATCTTGTGCAATCTTGCAC+AGG | - | chr1_4:14372409-14372428 | None:intergenic | 40.0% | |
GTGCAAGATTGCACAAGATA+AGG | + | chr1_4:14372409-14372428 | Msa0152030:intron | 40.0% | |
GCAAGATTGCACAAGATAAG+GGG | + | chr1_4:14372411-14372430 | Msa0152030:intron | 40.0% | |
TGTGGAGAACCCTATAAAAG+TGG | - | chr1_4:14372448-14372467 | None:intergenic | 40.0% | |
GTGGGGTCATTAATAAGATG+TGG | - | chr1_4:14372466-14372485 | None:intergenic | 40.0% | |
TAAAACCTGAAAAGGTGAGG+AGG | - | chr1_4:14372553-14372572 | None:intergenic | 40.0% | |
!!! | TTGGTGTGTTTTAGTGGTAG+TGG | - | chr1_4:14372592-14372611 | None:intergenic | 40.0% |
!! | GCTTTGAAGGACTTTATGCA+AGG | + | chr1_4:14372652-14372671 | Msa0152030:intron | 40.0% |
CTTCCAAACAATGAACCATG+TGG | + | chr1_4:14373174-14373193 | Msa0152030:CDS | 40.0% | |
CCACTTTCTGAATTACCACA+TGG | - | chr1_4:14373192-14373211 | None:intergenic | 40.0% | |
CCATGTGGTAATTCAGAAAG+TGG | + | chr1_4:14373189-14373208 | Msa0152030:CDS | 40.0% | |
GAGAATTATGCCAAAAGGAG+TGG | + | chr1_4:14373321-14373340 | Msa0152030:CDS | 40.0% | |
! | AATTGAGAACCCACTCCTTT+TGG | - | chr1_4:14373334-14373353 | None:intergenic | 40.0% |
!!! | AGAGATTTGTTTTGTCACCG+TGG | + | chr1_4:14373396-14373415 | Msa0152030:CDS | 40.0% |
AATAGACCATCTTCGAGATG+TGG | + | chr1_4:14373465-14373484 | Msa0152030:CDS | 40.0% | |
! | AAATTTTGCGGTAGGATGCA+AGG | - | chr1_4:14373614-14373633 | None:intergenic | 40.0% |
TTTGTTGGAGTCGACAATCA+CGG | + | chr1_4:14374011-14374030 | Msa0152030:CDS | 40.0% | |
CACGGCAGAACAATATTGTT+TGG | + | chr1_4:14374029-14374048 | Msa0152030:CDS | 40.0% | |
GCAATATCTTGAGTCATCCA+TGG | - | chr1_4:14374275-14374294 | None:intergenic | 40.0% | |
! | GGAAGATCAGAGAGCATAAA+TGG | + | chr1_4:14374372-14374391 | Msa0152030:CDS | 40.0% |
! | TTTTTGCCCAATGTCCTCAA+TGG | - | chr1_4:14374549-14374568 | None:intergenic | 40.0% |
ACCATGTTGGATACATACAG+GGG | + | chr1_4:14374581-14374600 | Msa0152030:CDS | 40.0% | |
TCGATCTTTATCCCCTTTAG+AGG | + | chr1_4:14374613-14374632 | Msa0152030:CDS | 40.0% | |
! | GTAAACTTGCTCCTCTAAAG+GGG | - | chr1_4:14374627-14374646 | None:intergenic | 40.0% |
AATTTCAGGAGGAGTTTGAG+AGG | + | chr1_4:14374675-14374694 | Msa0152030:CDS | 40.0% | |
ATTTCAGGAGGAGTTTGAGA+GGG | + | chr1_4:14374676-14374695 | Msa0152030:CDS | 40.0% | |
!! | GTTGCAAGCACTTTGAGTTT+TGG | + | chr1_4:14374813-14374832 | Msa0152030:CDS | 40.0% |
!! | TGCAAGCACTTTGAGTTTTG+GGG | + | chr1_4:14374815-14374834 | Msa0152030:CDS | 40.0% |
! | CCTTTTGTATTAGACCTTGG+CGG | - | chr1_4:14375022-14375041 | None:intergenic | 40.0% |
! | CGACCTTTTGTATTAGACCT+TGG | - | chr1_4:14375025-14375044 | None:intergenic | 40.0% |
!! | GCTGTACTTTTTGCAAGAGA+AGG | + | chr1_4:14375098-14375117 | Msa0152030:CDS | 40.0% |
!! | GTACTTTTTGCAAGAGAAGG+GGG | + | chr1_4:14375101-14375120 | Msa0152030:CDS | 40.0% |
GCACAATGTTACAACTTGTC+CGG | + | chr1_4:14375123-14375142 | Msa0152030:CDS | 40.0% | |
AGCCAACAATCACCAAGAAA+AGG | + | chr1_4:14375164-14375183 | Msa0152030:CDS | 40.0% | |
AGCGCTGTAAGTTATGGGTT+GGG | + | chr1_4:14372226-14372245 | Msa0152030:intron | 45.0% | |
!! | ATGGGTTGGGACTTACTGAT+AGG | + | chr1_4:14372239-14372258 | Msa0152030:intron | 45.0% |
! | TTCTTCCTCCTCACCTTTTC+AGG | + | chr1_4:14372545-14372564 | Msa0152030:intron | 45.0% |
!!! | GATTTGTTTTGTCACCGTGG+AGG | + | chr1_4:14373399-14373418 | Msa0152030:CDS | 45.0% |
TTGCATCCACATCTCGAAGA+TGG | - | chr1_4:14373474-14373493 | None:intergenic | 45.0% | |
ATCTTCGAGATGTGGATGCA+AGG | + | chr1_4:14373473-14373492 | Msa0152030:CDS | 45.0% | |
! | GATTTTTCCAGAAGAGTGGC+AGG | + | chr1_4:14373530-14373549 | Msa0152030:CDS | 45.0% |
TCAATAACCTGCCACTCTTC+TGG | - | chr1_4:14373540-14373559 | None:intergenic | 45.0% | |
! | AGGAAGTGCACTTGATCTGA+AGG | - | chr1_4:14373594-14373613 | None:intergenic | 45.0% |
! | TTAGTGGGCATGACAACAAC+TGG | + | chr1_4:14374351-14374370 | Msa0152030:CDS | 45.0% |
!! | TTAGGTTGGTCTTGCCATTG+AGG | + | chr1_4:14374532-14374551 | Msa0152030:intron | 45.0% |
GTCTTGCCATTGAGGACATT+GGG | + | chr1_4:14374540-14374559 | Msa0152030:CDS | 45.0% | |
TCCCCTGTATGTATCCAACA+TGG | - | chr1_4:14374585-14374604 | None:intergenic | 45.0% | |
CGTAATGGCAAGTAACTGGT+TGG | - | chr1_4:14374896-14374915 | None:intergenic | 45.0% | |
CCAACGTAATGGCAAGTAAC+TGG | - | chr1_4:14374900-14374919 | None:intergenic | 45.0% | |
CCAGTTACTTGCCATTACGT+TGG | + | chr1_4:14374897-14374916 | Msa0152030:CDS | 45.0% | |
TCATCACGACACCAACGTAA+TGG | - | chr1_4:14374911-14374930 | None:intergenic | 45.0% | |
AGGAGGACCTATTGAGAATG+TGG | + | chr1_4:14374970-14374989 | Msa0152030:CDS | 45.0% | |
CCGCCAAGGTCTAATACAAA+AGG | + | chr1_4:14375019-14375038 | Msa0152030:CDS | 45.0% | |
!!! | ATAAATTTATTCTAAATTTT+AGG | + | chr1_4:14374514-14374533 | Msa0152030:intron | 5.0% |
!! | CTGGGAGCGCTGTAAGTTAT+GGG | + | chr1_4:14372221-14372240 | Msa0152030:intron | 50.0% |
! | GAGCGCTGTAAGTTATGGGT+TGG | + | chr1_4:14372225-14372244 | Msa0152030:intron | 50.0% |
CAACAGCATCTCCATACCGT+TGG | - | chr1_4:14373941-14373960 | None:intergenic | 50.0% | |
GGTCTTGCCATTGAGGACAT+TGG | + | chr1_4:14374539-14374558 | Msa0152030:CDS | 50.0% | |
! | AGTCTTATGGGACGGTGATG+TGG | + | chr1_4:14374781-14374800 | Msa0152030:CDS | 50.0% |
TTATGGGACGGTGATGTGGT+TGG | + | chr1_4:14374785-14374804 | Msa0152030:CDS | 50.0% | |
!! | GCTGGGAGCGCTGTAAGTTA+TGG | + | chr1_4:14372220-14372239 | Msa0152030:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 14372215 | 14375246 | 14372215 | ID=Msa0152030;Name=Msa0152030 |
chr1_4 | mRNA | 14372215 | 14375246 | 14372215 | ID=Msa0152030-mRNA-1;Parent=Msa0152030;Name=Msa0152030-mRNA-1;_AED=0.07;_eAED=0.15;_QI=0|0|0|0.75|0.66|0.5|4|0|648 |
chr1_4 | exon | 14372215 | 14372231 | 14372215 | ID=Msa0152030-mRNA-1:exon:5696;Parent=Msa0152030-mRNA-1 |
chr1_4 | exon | 14373140 | 14374103 | 14373140 | ID=Msa0152030-mRNA-1:exon:5697;Parent=Msa0152030-mRNA-1 |
chr1_4 | exon | 14374218 | 14374472 | 14374218 | ID=Msa0152030-mRNA-1:exon:5698;Parent=Msa0152030-mRNA-1 |
chr1_4 | exon | 14374536 | 14375246 | 14374536 | ID=Msa0152030-mRNA-1:exon:5699;Parent=Msa0152030-mRNA-1 |
chr1_4 | CDS | 14372215 | 14372231 | 14372215 | ID=Msa0152030-mRNA-1:cds;Parent=Msa0152030-mRNA-1 |
chr1_4 | CDS | 14373140 | 14374103 | 14373140 | ID=Msa0152030-mRNA-1:cds;Parent=Msa0152030-mRNA-1 |
chr1_4 | CDS | 14374218 | 14374472 | 14374218 | ID=Msa0152030-mRNA-1:cds;Parent=Msa0152030-mRNA-1 |
chr1_4 | CDS | 14374536 | 14375246 | 14374536 | ID=Msa0152030-mRNA-1:cds;Parent=Msa0152030-mRNA-1 |
Gene Sequence |
Protein sequence |