Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152070 | XP_024632725.2 | 72.755 | 323 | 27 | 6 | 1 | 262 | 19 | 341 | 1.03e-139 | 429 |
| Msa0152070 | XP_024632725.2 | 86.090 | 266 | 12 | 1 | 263 | 503 | 456 | 721 | 6.24e-155 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152070 | sp|Q9SY66|FRS11_ARATH | 31.488 | 289 | 136 | 7 | 44 | 270 | 48 | 336 | 1.81e-35 | 143 |
| Msa0152070 | sp|Q9SY66|FRS11_ARATH | 31.288 | 163 | 87 | 1 | 261 | 398 | 442 | 604 | 7.26e-21 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152070 | A0A445GCJ8 | 39.459 | 555 | 202 | 12 | 39 | 502 | 89 | 600 | 2.54e-115 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0152030 | Msa0152070 | 0.871325 | 7.446633e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152070 | MtrunA17_Chr5g0431001 | 33.447 | 293 | 128 | 6 | 44 | 269 | 61 | 353 | 2.46e-39 | 149 |
| Msa0152070 | MtrunA17_Chr1g0198761 | 32.646 | 291 | 127 | 7 | 47 | 269 | 50 | 339 | 2.93e-39 | 152 |
| Msa0152070 | MtrunA17_Chr1g0198761 | 31.058 | 293 | 124 | 4 | 263 | 477 | 448 | 740 | 3.99e-36 | 142 |
| Msa0152070 | MtrunA17_Chr2g0276841 | 32.143 | 280 | 128 | 6 | 44 | 261 | 70 | 349 | 1.38e-36 | 144 |
| Msa0152070 | MtrunA17_Chr2g0276841 | 32.515 | 163 | 85 | 1 | 261 | 398 | 464 | 626 | 3.65e-22 | 100 |
| Msa0152070 | MtrunA17_Chr2g0290391 | 28.758 | 306 | 128 | 6 | 44 | 269 | 51 | 346 | 3.39e-35 | 139 |
| Msa0152070 | MtrunA17_Chr2g0290391 | 30.864 | 162 | 80 | 3 | 264 | 399 | 456 | 611 | 8.65e-15 | 77.4 |
| Msa0152070 | MtrunA17_Chr2g0294841 | 30.233 | 301 | 127 | 6 | 44 | 270 | 45 | 336 | 2.35e-34 | 137 |
| Msa0152070 | MtrunA17_Chr2g0294841 | 31.250 | 160 | 84 | 1 | 263 | 396 | 444 | 603 | 4.55e-18 | 87.8 |
| Msa0152070 | MtrunA17_Chr5g0402481 | 67.778 | 90 | 23 | 2 | 410 | 493 | 1 | 90 | 6.06e-32 | 119 |
| Msa0152070 | MtrunA17_Chr5g0448761 | 27.954 | 347 | 167 | 9 | 40 | 311 | 56 | 394 | 7.35e-26 | 111 |
| Msa0152070 | MtrunA17_Chr2g0296781 | 27.444 | 266 | 137 | 6 | 50 | 261 | 3 | 266 | 1.07e-23 | 105 |
| Msa0152070 | MtrunA17_Chr8g0363841 | 26.736 | 288 | 154 | 6 | 31 | 261 | 4 | 291 | 2.77e-23 | 103 |
| Msa0152070 | MtrunA17_Chr1g0207551 | 27.148 | 291 | 154 | 8 | 39 | 273 | 29 | 317 | 3.24e-22 | 100 |
| Msa0152070 | MtrunA17_Chr1g0207551 | 24.859 | 177 | 104 | 1 | 252 | 399 | 411 | 587 | 8.46e-11 | 64.7 |
| Msa0152070 | MtrunA17_Chr3g0082121 | 26.962 | 293 | 154 | 10 | 26 | 263 | 28 | 315 | 4.60e-22 | 100 |
| Msa0152070 | MtrunA17_Chr5g0440451 | 25.357 | 280 | 148 | 5 | 43 | 261 | 42 | 321 | 3.17e-21 | 97.8 |
| Msa0152070 | MtrunA17_Chr1g0202341 | 26.481 | 287 | 147 | 6 | 42 | 268 | 49 | 331 | 1.68e-20 | 95.1 |
| Msa0152070 | MtrunA17_Chr1g0202341 | 30.539 | 167 | 86 | 3 | 263 | 399 | 441 | 607 | 7.99e-15 | 77.4 |
| Msa0152070 | MtrunA17_Chr2g0287651 | 26.022 | 269 | 140 | 6 | 50 | 259 | 81 | 349 | 1.83e-20 | 95.1 |
| Msa0152070 | MtrunA17_Chr2g0329031 | 27.839 | 273 | 146 | 7 | 50 | 273 | 20 | 290 | 1.13e-19 | 92.8 |
| Msa0152070 | MtrunA17_Chr1g0164591 | 30.601 | 183 | 103 | 5 | 104 | 263 | 14 | 195 | 1.52e-19 | 89.7 |
| Msa0152070 | MtrunA17_Chr6g0458391 | 22.977 | 383 | 219 | 11 | 41 | 358 | 222 | 593 | 1.99e-19 | 92.0 |
| Msa0152070 | MtrunA17_Chr3g0118611 | 31.447 | 159 | 95 | 4 | 166 | 311 | 115 | 272 | 5.76e-19 | 90.5 |
| Msa0152070 | MtrunA17_Chr6g0477261 | 33.333 | 147 | 78 | 3 | 168 | 294 | 54 | 200 | 1.94e-18 | 88.6 |
| Msa0152070 | MtrunA17_Chr2g0287061 | 26.316 | 285 | 171 | 10 | 14 | 269 | 155 | 429 | 1.17e-17 | 86.3 |
| Msa0152070 | MtrunA17_Chr5g0441581 | 23.779 | 307 | 173 | 9 | 20 | 270 | 2 | 303 | 5.67e-16 | 80.9 |
| Msa0152070 | MtrunA17_Chr3g0080351 | 23.944 | 284 | 140 | 7 | 39 | 261 | 71 | 339 | 1.29e-15 | 80.1 |
| Msa0152070 | MtrunA17_Chr5g0448511 | 34.783 | 115 | 67 | 1 | 163 | 269 | 6 | 120 | 2.55e-15 | 78.6 |
| Msa0152070 | MtrunA17_Chr2g0324011 | 26.182 | 275 | 145 | 8 | 41 | 258 | 7 | 280 | 1.32e-14 | 76.6 |
| Msa0152070 | MtrunA17_Chr1g0196541 | 23.664 | 262 | 146 | 7 | 50 | 258 | 3 | 263 | 1.61e-14 | 76.3 |
| Msa0152070 | MtrunA17_Chr1g0203051 | 23.936 | 188 | 118 | 2 | 107 | 269 | 174 | 361 | 4.44e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152070 | AT1G10240.2 | 31.488 | 289 | 136 | 7 | 44 | 270 | 48 | 336 | 1.84e-36 | 143 |
| Msa0152070 | AT1G10240.2 | 31.288 | 163 | 87 | 1 | 261 | 398 | 442 | 604 | 7.38e-22 | 99.8 |
| Msa0152070 | AT1G10240.1 | 31.488 | 289 | 136 | 7 | 44 | 270 | 48 | 336 | 1.84e-36 | 143 |
| Msa0152070 | AT1G10240.1 | 31.288 | 163 | 87 | 1 | 261 | 398 | 442 | 604 | 7.38e-22 | 99.8 |
| Msa0152070 | AT5G28530.1 | 27.545 | 334 | 161 | 8 | 17 | 269 | 17 | 350 | 7.83e-34 | 135 |
| Msa0152070 | AT5G28530.1 | 30.464 | 151 | 77 | 3 | 272 | 396 | 468 | 616 | 3.80e-14 | 75.5 |
| Msa0152070 | AT5G28530.3 | 27.545 | 334 | 161 | 8 | 17 | 269 | 17 | 350 | 8.37e-34 | 135 |
| Msa0152070 | AT5G28530.3 | 31.126 | 151 | 72 | 3 | 272 | 396 | 468 | 612 | 6.98e-14 | 74.7 |
| Msa0152070 | AT5G28530.2 | 27.545 | 334 | 161 | 8 | 17 | 269 | 17 | 350 | 8.37e-34 | 135 |
| Msa0152070 | AT5G28530.2 | 31.126 | 151 | 72 | 3 | 272 | 396 | 468 | 612 | 6.98e-14 | 74.7 |
| Msa0152070 | AT4G38180.1 | 30.392 | 306 | 145 | 8 | 17 | 258 | 45 | 346 | 3.90e-28 | 119 |
| Msa0152070 | AT5G28530.5 | 27.000 | 300 | 143 | 8 | 17 | 269 | 17 | 287 | 1.10e-24 | 108 |
| Msa0152070 | AT5G28530.5 | 31.126 | 151 | 72 | 3 | 272 | 396 | 405 | 549 | 5.93e-14 | 74.7 |
| Msa0152070 | AT5G28530.4 | 27.000 | 300 | 143 | 8 | 17 | 269 | 17 | 287 | 1.11e-24 | 108 |
| Msa0152070 | AT5G28530.4 | 30.464 | 151 | 77 | 3 | 272 | 396 | 405 | 553 | 3.31e-14 | 75.9 |
| Msa0152070 | AT4G15090.1 | 26.019 | 319 | 172 | 9 | 16 | 273 | 22 | 337 | 3.41e-21 | 97.8 |
| Msa0152070 | AT4G15090.1 | 26.554 | 177 | 101 | 3 | 252 | 399 | 431 | 607 | 9.20e-13 | 71.2 |
| Msa0152070 | AT4G15090.5 | 26.019 | 319 | 172 | 9 | 16 | 273 | 22 | 337 | 3.41e-21 | 97.8 |
| Msa0152070 | AT4G15090.5 | 26.554 | 177 | 101 | 3 | 252 | 399 | 431 | 607 | 9.20e-13 | 71.2 |
| Msa0152070 | AT4G15090.3 | 26.019 | 319 | 172 | 9 | 16 | 273 | 22 | 337 | 3.41e-21 | 97.8 |
| Msa0152070 | AT4G15090.3 | 26.554 | 177 | 101 | 3 | 252 | 399 | 431 | 607 | 9.20e-13 | 71.2 |
| Msa0152070 | AT4G15090.2 | 26.019 | 319 | 172 | 9 | 16 | 273 | 22 | 337 | 3.41e-21 | 97.8 |
| Msa0152070 | AT4G15090.2 | 26.554 | 177 | 101 | 3 | 252 | 399 | 431 | 607 | 9.20e-13 | 71.2 |
| Msa0152070 | AT4G15090.4 | 26.019 | 319 | 172 | 9 | 16 | 273 | 22 | 337 | 3.41e-21 | 97.8 |
| Msa0152070 | AT4G15090.4 | 26.554 | 177 | 101 | 3 | 252 | 399 | 431 | 607 | 9.20e-13 | 71.2 |
| Msa0152070 | AT2G27110.2 | 26.502 | 283 | 161 | 7 | 16 | 261 | 24 | 296 | 1.71e-20 | 95.9 |
| Msa0152070 | AT2G27110.1 | 26.502 | 283 | 161 | 7 | 16 | 261 | 24 | 296 | 1.71e-20 | 95.9 |
| Msa0152070 | AT1G76320.1 | 26.642 | 274 | 149 | 9 | 50 | 273 | 3 | 274 | 1.32e-18 | 89.7 |
| Msa0152070 | AT1G76320.4 | 26.642 | 274 | 149 | 9 | 50 | 273 | 3 | 274 | 1.32e-18 | 89.7 |
| Msa0152070 | AT1G76320.2 | 26.642 | 274 | 149 | 9 | 50 | 273 | 3 | 274 | 1.42e-18 | 89.7 |
| Msa0152070 | AT1G76320.3 | 26.642 | 274 | 149 | 9 | 50 | 273 | 3 | 274 | 1.74e-18 | 89.4 |
| Msa0152070 | AT3G22170.2 | 23.373 | 338 | 173 | 10 | 9 | 273 | 22 | 346 | 1.96e-16 | 83.2 |
| Msa0152070 | AT3G22170.1 | 23.373 | 338 | 173 | 10 | 9 | 273 | 22 | 346 | 1.96e-16 | 83.2 |
| Msa0152070 | AT4G38170.1 | 27.624 | 181 | 101 | 2 | 264 | 414 | 232 | 412 | 6.85e-15 | 77.8 |
| Msa0152070 | AT4G38170.1 | 32.500 | 120 | 64 | 3 | 151 | 261 | 3 | 114 | 2.27e-11 | 66.6 |
| Msa0152070 | AT2G27110.3 | 35.644 | 101 | 57 | 1 | 169 | 261 | 51 | 151 | 9.28e-15 | 77.4 |
| Msa0152070 | AT2G32250.6 | 24.335 | 263 | 141 | 9 | 47 | 273 | 41 | 281 | 7.43e-13 | 71.6 |
| Msa0152070 | AT2G32250.1 | 24.335 | 263 | 141 | 9 | 47 | 273 | 41 | 281 | 7.43e-13 | 71.6 |
| Msa0152070 | AT2G32250.3 | 24.335 | 263 | 141 | 9 | 47 | 273 | 41 | 281 | 7.43e-13 | 71.6 |
| Msa0152070 | AT2G32250.2 | 24.335 | 263 | 141 | 9 | 47 | 273 | 41 | 281 | 7.56e-13 | 71.6 |
| Msa0152070 | AT2G32250.4 | 24.335 | 263 | 141 | 9 | 47 | 273 | 41 | 281 | 7.56e-13 | 71.6 |
| Msa0152070 | AT2G32250.5 | 24.335 | 263 | 141 | 9 | 47 | 273 | 41 | 281 | 7.60e-13 | 71.6 |
| Msa0152070 | AT2G32250.8 | 24.231 | 260 | 139 | 9 | 50 | 273 | 3 | 240 | 1.22e-12 | 70.9 |
| Msa0152070 | AT2G32250.7 | 24.231 | 260 | 139 | 9 | 50 | 273 | 3 | 240 | 1.25e-12 | 70.9 |
Find 67 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAAGCACTTTGAGTTT+TGG | 0.246090 | 1_4:+14430825 | Msa0152070:intron |
| CTATTTCGTTGTTCTTTAGA+TGG | 0.251501 | 1_4:-14426214 | None:intergenic |
| ATGCTTCCAATTTGAATTTA+CGG | 0.253114 | 1_4:+14426621 | Msa0152070:CDS |
| TCGATCTTTATCCCCTTTAG+AGG | 0.270351 | 1_4:+14427381 | Msa0152070:CDS |
| ATATGCTTTCAAGAAATTTC+AGG | 0.280698 | 1_4:+14427429 | Msa0152070:CDS |
| AAAGACTAGAAAATATATTT+TGG | 0.283353 | 1_4:+14426656 | Msa0152070:CDS |
| TATCAACCGTAAATTCAAAT+TGG | 0.296445 | 1_4:-14426627 | None:intergenic |
| GGAAGATCAGAGAGCATAAA+TGG | 0.307176 | 1_4:+14427140 | Msa0152070:CDS |
| AATTGAGAACCCACTCCTTT+TGG | 0.307636 | 1_4:-14426098 | None:intergenic |
| AATACTTATAATATGCCTTT+TGG | 0.320115 | 1_4:+14426751 | Msa0152070:CDS |
| AGAAAACACTGCCCTATAAA+AGG | 0.321677 | 1_4:-14426037 | None:intergenic |
| TAGGTTGAGAATCACAAATT+TGG | 0.324904 | 1_4:+14425904 | None:intergenic |
| ATCCTACCGCAAAATTTCTA+AGG | 0.334787 | 1_4:+14426384 | Msa0152070:CDS |
| GTCTTGCCATTGAGGACATT+GGG | 0.350598 | 1_4:+14427308 | Msa0152070:CDS |
| TTACCACATGGTTCATTGTT+TGG | 0.355616 | 1_4:-14425944 | None:intergenic |
| CACGGCAGAACAATATTGTT+TGG | 0.372693 | 1_4:+14426796 | Msa0152070:CDS |
| TGTAATCTTGCTCCTCTAAA+GGG | 0.375892 | 1_4:-14427393 | None:intergenic |
| AGCATCATATTTACTTCAAC+CGG | 0.383467 | 1_4:-14430953 | None:intergenic |
| CAAGCAAATAATGCGTGTTA+TGG | 0.401498 | 1_4:+14426453 | Msa0152070:CDS |
| TTAGTGGGCATGACAACAAC+TGG | 0.419458 | 1_4:+14427119 | Msa0152070:intron |
| TGAACATGACTTTCTTTGTC+CGG | 0.428397 | 1_4:-14431154 | None:intergenic |
| GAGAATTATGCCAAAAGGAG+TGG | 0.432756 | 1_4:+14426088 | Msa0152070:CDS |
| TTGTAATCTTGCTCCTCTAA+AGG | 0.440368 | 1_4:-14427394 | None:intergenic |
| CGTAATGGCAAGTAACTTGT+TGG | 0.443399 | 1_4:-14430905 | None:intergenic |
| GGTCTTGCCATTGAGGACAT+TGG | 0.445560 | 1_4:+14427307 | Msa0152070:CDS |
| GTATTCTCCACATTCTCAAT+AGG | 0.453199 | 1_4:-14430989 | None:intergenic |
| GCACAATGTTACAACTTGTC+CGG | 0.470462 | 1_4:+14431135 | Msa0152070:CDS |
| AAACAGTGTCTACATTTCAA+TGG | 0.471539 | 1_4:+14426839 | Msa0152070:CDS |
| TTTATGAGAATTATGCCAAA+AGG | 0.477231 | 1_4:+14426083 | Msa0152070:CDS |
| TTTGAATTGTACCAACGGTA+TGG | 0.489975 | 1_4:+14426694 | Msa0152070:CDS |
| CCCAAAACAAAACGATCAAA+AGG | 0.494525 | 1_4:+14431058 | Msa0152070:CDS |
| TCTCAAAACAATCTTTATGA+AGG | 0.497920 | 1_4:-14430880 | None:intergenic |
| CCGCCAAGGTCTAATACAAA+AGG | 0.501842 | 1_4:+14431031 | Msa0152070:CDS |
| TTGCATCCACATCTCGAAGA+TGG | 0.506363 | 1_4:-14426238 | None:intergenic |
| ATACCATGTTGGATACATAC+AGG | 0.511907 | 1_4:+14427347 | Msa0152070:CDS |
| TTAGGTTGGTCTTGCCATTG+AGG | 0.515284 | 1_4:+14427300 | Msa0152070:intron |
| CCATGTGGTAATTCAGAAAG+TGG | 0.515343 | 1_4:+14425956 | Msa0152070:CDS |
| ACCCAACAATCACCAAGAAA+AGG | 0.518308 | 1_4:+14431176 | Msa0152070:CDS |
| ATTCATCAAGATAACATGAA+TGG | 0.519717 | 1_4:+14426547 | Msa0152070:CDS |
| AGTGGGTTCTCAATTAGAAA+AGG | 0.520009 | 1_4:+14426106 | Msa0152070:CDS |
| TATTTGCTTGACTGAAAGAT+CGG | 0.528838 | 1_4:-14426440 | None:intergenic |
| TCGTGATGAATTTCAAAGAC+CGG | 0.536511 | 1_4:+14430934 | Msa0152070:CDS |
| AAAACGATCAAAAGGAGGAA+TGG | 0.539810 | 1_4:+14431066 | Msa0152070:CDS |
| TCATCACGACACCAACGTAA+TGG | 0.541318 | 1_4:-14430920 | None:intergenic |
| AATTTCAGGAGGAGTTTGAG+AGG | 0.553644 | 1_4:+14427443 | Msa0152070:CDS |
| AGGAAGTGCACTTGATCTGA+AGG | 0.561598 | 1_4:-14426358 | None:intergenic |
| CCACTTTCTGAATTACCACA+TGG | 0.566899 | 1_4:-14425956 | None:intergenic |
| ATTTCAGGAGGAGTTTGAGA+GGG | 0.577997 | 1_4:+14427444 | Msa0152070:CDS |
| AAAATTACATCATACCATGT+TGG | 0.580077 | 1_4:+14427336 | Msa0152070:CDS |
| AGGAGGACCTATTGAGAATG+TGG | 0.586619 | 1_4:+14430982 | Msa0152070:CDS |
| GTAAATATGATGCTTAGTGA+AGG | 0.591344 | 1_4:+14430962 | Msa0152070:CDS |
| TACAATTCAAAACAATGAGG+TGG | 0.592067 | 1_4:-14426682 | None:intergenic |
| AGAATTATGCCAAAAGGAGT+GGG | 0.597719 | 1_4:+14426089 | Msa0152070:CDS |
| TTTGTTGGAGTCGACAATCA+CGG | 0.607351 | 1_4:+14426778 | Msa0152070:CDS |
| TGCTTTCAAGAAATTTCAGG+AGG | 0.608867 | 1_4:+14427432 | Msa0152070:CDS |
| TACCATGTTGGATACATACA+GGG | 0.612968 | 1_4:+14427348 | Msa0152070:CDS |
| AATATGATGCTTAGTGAAGG+AGG | 0.615302 | 1_4:+14430965 | Msa0152070:CDS |
| GTAATCTTGCTCCTCTAAAG+GGG | 0.623097 | 1_4:-14427392 | None:intergenic |
| CAACAGCATCTCCATACCGT+TGG | 0.623428 | 1_4:-14426705 | None:intergenic |
| CAAGTTACTTGCCATTACGT+TGG | 0.628297 | 1_4:+14430909 | Msa0152070:CDS |
| TTTCTAAGGAAGAAGAGAAG+CGG | 0.644788 | 1_4:+14426398 | Msa0152070:CDS |
| AAAACAAAACGATCAAAAGG+AGG | 0.648569 | 1_4:+14431061 | Msa0152070:CDS |
| TCCCCTGTATGTATCCAACA+TGG | 0.678677 | 1_4:-14427350 | None:intergenic |
| AAGGTAGTAGATCATGATTG+TGG | 0.693617 | 1_4:-14426339 | None:intergenic |
| TGGTACAATTCAAAACAATG+AGG | 0.695081 | 1_4:-14426685 | None:intergenic |
| CTTCCAAACAATGAACCATG+TGG | 0.706506 | 1_4:+14425941 | Msa0152070:CDS |
| ACCATGTTGGATACATACAG+GGG | 0.713854 | 1_4:+14427349 | Msa0152070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTAAACGATTTTAAAT+CGG | - | chr1_4:14427693-14427712 | None:intergenic | 10.0% |
| !!! | TAAAATCGTTTAATTTAAAT+CGG | + | chr1_4:14427696-14427715 | Msa0152070:intron | 10.0% |
| !!! | TAAATTAAAAGATTTTAGAT+GGG | - | chr1_4:14427727-14427746 | None:intergenic | 10.0% |
| !!! | TTAAATTAAAAGATTTTAGA+TGG | - | chr1_4:14427728-14427747 | None:intergenic | 10.0% |
| !! | AAAAATCTTTGAATTTAAAT+CGG | + | chr1_4:14427785-14427804 | Msa0152070:intron | 10.0% |
| !! | AAATAAAAATTAATTAACTC+CGG | - | chr1_4:14430085-14430104 | None:intergenic | 10.0% |
| !!! | AAAGACTAGAAAATATATTT+TGG | + | chr1_4:14426656-14426675 | Msa0152070:CDS | 15.0% |
| !! | AATCATATAGAAAATACATT+GGG | - | chr1_4:14426946-14426965 | None:intergenic | 15.0% |
| !!! | ATTTATTCTAAATTTTAGGT+TGG | + | chr1_4:14427286-14427305 | Msa0152070:intron | 15.0% |
| !!! | ATCAAATACACTTTTTAAAT+CGG | - | chr1_4:14427650-14427669 | None:intergenic | 15.0% |
| !!! | AAATTAAACGATTTTAAATC+GGG | - | chr1_4:14427692-14427711 | None:intergenic | 15.0% |
| !!! | AAAATCGTTTAATTTAAATC+GGG | + | chr1_4:14427697-14427716 | Msa0152070:intron | 15.0% |
| !! | AATATAGTGAGAATTTAAAT+GGG | - | chr1_4:14427816-14427835 | None:intergenic | 15.0% |
| !! | AAATATAGTGAGAATTTAAA+TGG | - | chr1_4:14427817-14427836 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTATACACGATTA+TGG | + | chr1_4:14427839-14427858 | Msa0152070:intron | 15.0% |
| !!! | TTTTTTTTGTCATCTTAATT+TGG | - | chr1_4:14429827-14429846 | None:intergenic | 15.0% |
| !!! | GATTTACTGATTTATATTTT+CGG | - | chr1_4:14429940-14429959 | None:intergenic | 15.0% |
| !!! | CTACAATTTTTTTTAAGAAA+AGG | - | chr1_4:14430113-14430132 | None:intergenic | 15.0% |
| !!! | GTAGGTTTGTTAATAAAAAT+GGG | + | chr1_4:14426128-14426147 | Msa0152070:intron | 20.0% |
| !!! | AATACTTATAATATGCCTTT+TGG | + | chr1_4:14426751-14426770 | Msa0152070:CDS | 20.0% |
| !! | CAATCATATAGAAAATACAT+TGG | - | chr1_4:14426947-14426966 | None:intergenic | 20.0% |
| !! | ATTTACTGTGAAATATTACA+AGG | + | chr1_4:14427504-14427523 | Msa0152070:intron | 20.0% |
| !!! | TAGAAAACACTTTTTAAATC+AGG | + | chr1_4:14427579-14427598 | Msa0152070:intron | 20.0% |
| !!! | GTGAATATGACTTTTTAAAT+CGG | + | chr1_4:14427601-14427620 | Msa0152070:intron | 20.0% |
| !!! | TGAATATGACTTTTTAAATC+GGG | + | chr1_4:14427602-14427621 | Msa0152070:intron | 20.0% |
| !! | ATATAGTGAGAATTTAAATG+GGG | - | chr1_4:14427815-14427834 | None:intergenic | 20.0% |
| !! | AAATATCATATGATCAATGA+AGG | + | chr1_4:14427878-14427897 | Msa0152070:intron | 20.0% |
| !! | GTCAAATTACAAAATAATTC+TGG | + | chr1_4:14427954-14427973 | Msa0152070:intron | 20.0% |
| !! | AAAGCCATGTATTAAATAAT+AGG | + | chr1_4:14428338-14428357 | Msa0152070:intron | 20.0% |
| !! | TATGCCTATTATTTAATACA+TGG | - | chr1_4:14428345-14428364 | Msa0152080:intron | 20.0% |
| !! | CAATACTTTCATATTATCAT+AGG | + | chr1_4:14428731-14428750 | Msa0152070:intron | 20.0% |
| !! | ATCTTAATAAGATACATACA+TGG | - | chr1_4:14428813-14428832 | Msa0152080:intron | 20.0% |
| !! | TCAGATAAAATTTAGCTATA+CGG | + | chr1_4:14429218-14429237 | Msa0152070:intron | 20.0% |
| !! | TGAGATATTCCATTTAAAAA+AGG | + | chr1_4:14429284-14429303 | Msa0152070:intron | 20.0% |
| !! | GAGATATTCCATTTAAAAAA+GGG | + | chr1_4:14429285-14429304 | Msa0152070:intron | 20.0% |
| !! | AGATATTCCATTTAAAAAAG+GGG | + | chr1_4:14429286-14429305 | Msa0152070:intron | 20.0% |
| !! | ACATTGAAGAGATTAAAATT+AGG | + | chr1_4:14429534-14429553 | Msa0152070:intron | 20.0% |
| !! | TAAGATGACAAAAAAAAACT+TGG | + | chr1_4:14429830-14429849 | Msa0152070:intron | 20.0% |
| !!! | TAAAAACCTTTTTTTAAGTC+AGG | + | chr1_4:14430673-14430692 | Msa0152070:intron | 20.0% |
| !!! | AGAAAAGATAGTTTTTAGAT+AGG | - | chr1_4:14430703-14430722 | None:intergenic | 20.0% |
| !! | TTAACTCAAGGATATTAAAT+AGG | - | chr1_4:14430771-14430790 | None:intergenic | 20.0% |
| !!! | AAAAATCACTTTTTAACTCA+AGG | - | chr1_4:14430783-14430802 | None:intergenic | 20.0% |
| !! | AACGATTTTGAACCTTTTAT+AGG | + | chr1_4:14426025-14426044 | Msa0152070:CDS | 25.0% |
| !! | ACGATTTTGAACCTTTTATA+GGG | + | chr1_4:14426026-14426045 | Msa0152070:CDS | 25.0% |
| ! | TTTATGAGAATTATGCCAAA+AGG | + | chr1_4:14426083-14426102 | Msa0152070:CDS | 25.0% |
| !!! | GGTAGGTTTGTTAATAAAAA+TGG | + | chr1_4:14426127-14426146 | Msa0152070:intron | 25.0% |
| ! | ATAAAAATGGGATAATGCAT+AGG | + | chr1_4:14426140-14426159 | Msa0152070:intron | 25.0% |
| !!! | GGATCTTGAATTTTTTTATC+AGG | - | chr1_4:14426196-14426215 | None:intergenic | 25.0% |
| ! | CTTGAGAAAAATGTAAAACA+TGG | + | chr1_4:14426478-14426497 | Msa0152070:intron | 25.0% |
| ! | ATTCATCAAGATAACATGAA+TGG | + | chr1_4:14426547-14426566 | Msa0152070:CDS | 25.0% |
| ! | ATGCTTCCAATTTGAATTTA+CGG | + | chr1_4:14426621-14426640 | Msa0152070:CDS | 25.0% |
| ! | TATCAACCGTAAATTCAAAT+TGG | - | chr1_4:14426630-14426649 | None:intergenic | 25.0% |
| !!! | ATTGTTTTGAATTGTACCAA+CGG | + | chr1_4:14426689-14426708 | Msa0152070:CDS | 25.0% |
| !!! | TATACAAAAAGCATGTTTTG+TGG | - | chr1_4:14427080-14427099 | None:intergenic | 25.0% |
| !!! | CAAAACATGCTTTTTGTATA+TGG | + | chr1_4:14427080-14427099 | Msa0152070:intron | 25.0% |
| ! | ACATTACTGCTAAATTTAGT+GGG | + | chr1_4:14427104-14427123 | Msa0152070:intron | 25.0% |
| ! | ATCACAAAACATTAACAAGA+TGG | - | chr1_4:14427250-14427269 | None:intergenic | 25.0% |
| ! | AAAATTACATCATACCATGT+TGG | + | chr1_4:14427336-14427355 | Msa0152070:CDS | 25.0% |
| ! | ATATGCTTTCAAGAAATTTC+AGG | + | chr1_4:14427429-14427448 | Msa0152070:CDS | 25.0% |
| !! | ACAAAAGCATAAAGTCTTAT+GGG | + | chr1_4:14427537-14427556 | Msa0152070:intron | 25.0% |
| ! | CATTTAAAAAAGGCTAACTA+GGG | + | chr1_4:14427760-14427779 | Msa0152070:intron | 25.0% |
| ! | AATAAGCTATTAACATGACA+TGG | + | chr1_4:14428035-14428054 | Msa0152070:intron | 25.0% |
| !! | AATTTGCAAAGTCTTATCAT+CGG | + | chr1_4:14428102-14428121 | Msa0152070:intron | 25.0% |
| ! | TTAAACTAAGATAGTGAAAC+TGG | - | chr1_4:14428450-14428469 | Msa0152080:intron | 25.0% |
| ! | CTGATTCATGAATAAATGTA+AGG | - | chr1_4:14428473-14428492 | Msa0152080:intron | 25.0% |
| !!! | CAATGATGAATTGATTTTCA+GGG | - | chr1_4:14428507-14428526 | Msa0152080:intron | 25.0% |
| !!! | TCAATGATGAATTGATTTTC+AGG | - | chr1_4:14428508-14428527 | Msa0152080:intron | 25.0% |
| ! | TATCAAATGAGAATGAGAAA+AGG | - | chr1_4:14428542-14428561 | Msa0152080:intron | 25.0% |
| ! | TTTCAAATGTGAATGAGAAA+AGG | - | chr1_4:14428707-14428726 | Msa0152080:intron | 25.0% |
| ! | ATTGCAGATATGATTTATGT+TGG | - | chr1_4:14429092-14429111 | Msa0152080:intron | 25.0% |
| ! | TAAGCATTATGACAATGTAT+AGG | + | chr1_4:14429691-14429710 | Msa0152070:intron | 25.0% |
| ! | GGTTATATCAGTGATTAAAA+AGG | - | chr1_4:14429734-14429753 | Msa0152080:intron | 25.0% |
| ! | AATGTGGTTACATAGTAATA+AGG | - | chr1_4:14429755-14429774 | None:intergenic | 25.0% |
| ! | TAAAAATTAATTAACTCCGG+CGG | - | chr1_4:14430082-14430101 | None:intergenic | 25.0% |
| !!! | TTTTGTCTGGATTTTTTGAA+AGG | - | chr1_4:14430159-14430178 | None:intergenic | 25.0% |
| !! | AAAAGTGATTTTTGTACTAG+TGG | + | chr1_4:14430790-14430809 | Msa0152070:intron | 25.0% |
| ! | TCTCAAAACAATCTTTATGA+AGG | - | chr1_4:14430883-14430902 | None:intergenic | 25.0% |
| ! | GAAGACTTTAGATAAAAAAC+AGG | - | chr1_4:14431235-14431254 | None:intergenic | 25.0% |
| CTATTTCGTTGTTCTTTAGA+TGG | - | chr1_4:14426217-14426236 | None:intergenic | 30.0% | |
| ! | CTTCTTCCTTAGAAATTTTG+CGG | - | chr1_4:14426393-14426412 | None:intergenic | 30.0% |
| TATTTGCTTGACTGAAAGAT+CGG | - | chr1_4:14426443-14426462 | None:intergenic | 30.0% | |
| ! | ACAACTTTGTAAGTTTTCCA+AGG | + | chr1_4:14426588-14426607 | Msa0152070:CDS | 30.0% |
| TACAATTCAAAACAATGAGG+TGG | - | chr1_4:14426685-14426704 | None:intergenic | 30.0% | |
| TGGTACAATTCAAAACAATG+AGG | - | chr1_4:14426688-14426707 | None:intergenic | 30.0% | |
| TGCATTTGATACTACTTACA+AGG | + | chr1_4:14426726-14426745 | Msa0152070:intron | 30.0% | |
| AAACAGTGTCTACATTTCAA+TGG | + | chr1_4:14426839-14426858 | Msa0152070:CDS | 30.0% | |
| ! | ATGAGAGTAACAAAAGTATG+GGG | - | chr1_4:14426983-14427002 | None:intergenic | 30.0% |
| ! | CATGAGAGTAACAAAAGTAT+GGG | - | chr1_4:14426984-14427003 | None:intergenic | 30.0% |
| TCATGAGAGTAACAAAAGTA+TGG | - | chr1_4:14426985-14427004 | None:intergenic | 30.0% | |
| TGATCAGTAATGATTGTCTT+TGG | - | chr1_4:14427016-14427035 | None:intergenic | 30.0% | |
| CACATTACTGCTAAATTTAG+TGG | + | chr1_4:14427103-14427122 | Msa0152070:intron | 30.0% | |
| ! | CACAAAAGCATAAAGTCTTA+TGG | + | chr1_4:14427536-14427555 | Msa0152070:intron | 30.0% |
| ! | ACGATTTTAAATCGGGTAAA+GGG | - | chr1_4:14427685-14427704 | None:intergenic | 30.0% |
| ! | AACGATTTTAAATCGGGTAA+AGG | - | chr1_4:14427686-14427705 | None:intergenic | 30.0% |
| ! | CGGTTGATACCATTTAAAAA+AGG | + | chr1_4:14427750-14427769 | Msa0152070:intron | 30.0% |
| !!! | CCTAGTTAGCCTTTTTTAAA+TGG | - | chr1_4:14427762-14427781 | None:intergenic | 30.0% |
| CCATTTAAAAAAGGCTAACT+AGG | + | chr1_4:14427759-14427778 | Msa0152070:intron | 30.0% | |
| GATAAGACTTTGCAAATTCT+AGG | - | chr1_4:14428100-14428119 | Msa0152080:three_prime_UTR | 30.0% | |
| ! | AATGATTCAGTTGATGCTTT+GGG | - | chr1_4:14428166-14428185 | Msa0152080:CDS | 30.0% |
| TTATTAAATACCAGTCCATC+AGG | + | chr1_4:14428294-14428313 | Msa0152070:intron | 30.0% | |
| GTATGTTCTATATTTCCTGA+TGG | - | chr1_4:14428312-14428331 | Msa0152080:intron | 30.0% | |
| ATAGGCATAAAAGACAAAGA+AGG | + | chr1_4:14428356-14428375 | Msa0152070:intron | 30.0% | |
| ! | TCAACACTTTTACATTACGA+AGG | + | chr1_4:14428565-14428584 | Msa0152070:intron | 30.0% |
| !! | TTCATATCTAGCTTTGACTT+TGG | - | chr1_4:14428591-14428610 | Msa0152080:intron | 30.0% |
| TTATATCCTGCTGCATTAAT+TGG | + | chr1_4:14428911-14428930 | Msa0152070:intron | 30.0% | |
| TGATGGTACAAGAAAAGATA+AGG | - | chr1_4:14429025-14429044 | Msa0152080:CDS | 30.0% | |
| TAAATTATATGCAGTCTCTC+AGG | - | chr1_4:14429185-14429204 | Msa0152080:intron | 30.0% | |
| !!! | TGATGAACCCCTTTTTTAAA+TGG | - | chr1_4:14429296-14429315 | Msa0152080:intron | 30.0% |
| ! | ATTTTGTTCTGTCTCAGAAA+TGG | + | chr1_4:14429377-14429396 | Msa0152070:intron | 30.0% |
| ! | TTTTGTTCTGTCTCAGAAAT+GGG | + | chr1_4:14429378-14429397 | Msa0152070:intron | 30.0% |
| GATCAACTGAAGACAAATAA+AGG | + | chr1_4:14429470-14429489 | Msa0152070:intron | 30.0% | |
| AGAATTGACCTAAATTTGCA+TGG | - | chr1_4:14429597-14429616 | Msa0152080:CDS | 30.0% | |
| GATGACAAAAAAAAACTTGG+AGG | + | chr1_4:14429833-14429852 | Msa0152070:intron | 30.0% | |
| ! | TTCTTGTTGTGTTTCATGAA+AGG | - | chr1_4:14429871-14429890 | None:intergenic | 30.0% |
| CATGAAACACAACAAGAAAA+AGG | + | chr1_4:14429873-14429892 | Msa0152070:intron | 30.0% | |
| !! | TTTTGAAAGGATGAAGCAAA+AGG | - | chr1_4:14430146-14430165 | None:intergenic | 30.0% |
| ! | TTGTTTGTAAAACCCTTTTG+TGG | - | chr1_4:14430212-14430231 | None:intergenic | 30.0% |
| AGCATCATATTTACTTCAAC+CGG | - | chr1_4:14430956-14430975 | None:intergenic | 30.0% | |
| GTAAATATGATGCTTAGTGA+AGG | + | chr1_4:14430962-14430981 | Msa0152070:CDS | 30.0% | |
| ACTTAATTAAAAATCCGCCA+AGG | + | chr1_4:14431017-14431036 | Msa0152070:CDS | 30.0% | |
| !!! | CCTTTTGATCGTTTTGTTTT+GGG | - | chr1_4:14431061-14431080 | None:intergenic | 30.0% |
| !!! | TCCTTTTGATCGTTTTGTTT+TGG | - | chr1_4:14431062-14431081 | None:intergenic | 30.0% |
| AAAACAAAACGATCAAAAGG+AGG | + | chr1_4:14431061-14431080 | Msa0152070:CDS | 30.0% | |
| ! | ATCTTCATTCTTCCTTTTCT+TGG | - | chr1_4:14431191-14431210 | None:intergenic | 30.0% |
| TTACCACATGGTTCATTGTT+TGG | - | chr1_4:14425947-14425966 | None:intergenic | 35.0% | |
| AGAAAACACTGCCCTATAAA+AGG | - | chr1_4:14426040-14426059 | None:intergenic | 35.0% | |
| AGAATTATGCCAAAAGGAGT+GGG | + | chr1_4:14426089-14426108 | Msa0152070:CDS | 35.0% | |
| ! | AGTGGGTTCTCAATTAGAAA+AGG | + | chr1_4:14426106-14426125 | Msa0152070:CDS | 35.0% |
| GGTTCTCAATTAGAAAAGGT+AGG | + | chr1_4:14426110-14426129 | Msa0152070:intron | 35.0% | |
| ! | TTTTATCAGGAAATCCTCCA+CGG | - | chr1_4:14426183-14426202 | None:intergenic | 35.0% |
| ! | CTCTTCTGGAAAAATCTCAA+AGG | - | chr1_4:14426293-14426312 | None:intergenic | 35.0% |
| ! | TTGAGATTTTTCCAGAAGAG+TGG | + | chr1_4:14426293-14426312 | Msa0152070:intron | 35.0% |
| AAGGTAGTAGATCATGATTG+TGG | - | chr1_4:14426342-14426361 | None:intergenic | 35.0% | |
| ATCCTACCGCAAAATTTCTA+AGG | + | chr1_4:14426384-14426403 | Msa0152070:CDS | 35.0% | |
| ! | TTCCTTAGAAATTTTGCGGT+AGG | - | chr1_4:14426389-14426408 | None:intergenic | 35.0% |
| ! | TTTCTAAGGAAGAAGAGAAG+CGG | + | chr1_4:14426398-14426417 | Msa0152070:CDS | 35.0% |
| CAAGCAAATAATGCGTGTTA+TGG | + | chr1_4:14426453-14426472 | Msa0152070:CDS | 35.0% | |
| TTTGAATTGTACCAACGGTA+TGG | + | chr1_4:14426694-14426713 | Msa0152070:CDS | 35.0% | |
| ! | ATGCCTTTTGGCATTTTTGT+TGG | + | chr1_4:14426763-14426782 | Msa0152070:CDS | 35.0% |
| ACTCCAACAAAAATGCCAAA+AGG | - | chr1_4:14426769-14426788 | None:intergenic | 35.0% | |
| TCAGTAATGATTGTCTTTGG+AGG | - | chr1_4:14427013-14427032 | None:intergenic | 35.0% | |
| TCATTACTGATCAAGATCCA+TGG | + | chr1_4:14427023-14427042 | Msa0152070:intron | 35.0% | |
| !! | CAAAAAGCATGTTTTGTGGA+TGG | - | chr1_4:14427076-14427095 | None:intergenic | 35.0% |
| !! | GAGATGAAGTAAAGCGTTTT+AGG | - | chr1_4:14427169-14427188 | None:intergenic | 35.0% |
| ATACCATGTTGGATACATAC+AGG | + | chr1_4:14427347-14427366 | Msa0152070:CDS | 35.0% | |
| TACCATGTTGGATACATACA+GGG | + | chr1_4:14427348-14427367 | Msa0152070:CDS | 35.0% | |
| TGTAATCTTGCTCCTCTAAA+GGG | - | chr1_4:14427396-14427415 | None:intergenic | 35.0% | |
| TTGTAATCTTGCTCCTCTAA+AGG | - | chr1_4:14427397-14427416 | None:intergenic | 35.0% | |
| TGCTTTCAAGAAATTTCAGG+AGG | + | chr1_4:14427432-14427451 | Msa0152070:CDS | 35.0% | |
| ! | AAGCATAAAGTCTTATGGGA+TGG | + | chr1_4:14427541-14427560 | Msa0152070:intron | 35.0% |
| TAAATCGGCCACCTATAAAT+CGG | - | chr1_4:14427635-14427654 | None:intergenic | 35.0% | |
| ! | GATTTTAAATCGGGTAAAGG+GGG | - | chr1_4:14427683-14427702 | None:intergenic | 35.0% |
| ! | CGATTTTAAATCGGGTAAAG+GGG | - | chr1_4:14427684-14427703 | None:intergenic | 35.0% |
| ! | CAATGATTCAGTTGATGCTT+TGG | - | chr1_4:14428167-14428186 | Msa0152080:CDS | 35.0% |
| ! | TTCTATATTTCCTGATGGAC+TGG | - | chr1_4:14428307-14428326 | Msa0152080:intron | 35.0% |
| !! | TGAATTGATTTTCAGGGACT+TGG | - | chr1_4:14428501-14428520 | Msa0152080:intron | 35.0% |
| GACTTGATGTAGCAAATGTT+AGG | - | chr1_4:14428650-14428669 | Msa0152080:intron | 35.0% | |
| AAAAGACAAGAGGAACTCTT+TGG | - | chr1_4:14428878-14428897 | Msa0152080:CDS | 35.0% | |
| TGGAGTTAACAAAAGACAAG+AGG | - | chr1_4:14428888-14428907 | Msa0152080:CDS | 35.0% | |
| AATGCAGCAGGATATAACAA+TGG | - | chr1_4:14428908-14428927 | Msa0152080:CDS | 35.0% | |
| AAAAGATAAGGCCAACACAA+GGG | - | chr1_4:14429013-14429032 | Msa0152080:CDS | 35.0% | |
| TGTACCATCAGACTGTAAAA+AGG | + | chr1_4:14429035-14429054 | Msa0152070:intron | 35.0% | |
| !! | TCAATCCAATTCTGAAGCAA+GGG | - | chr1_4:14429412-14429431 | Msa0152080:CDS | 35.0% |
| !! | ATCAATCCAATTCTGAAGCA+AGG | - | chr1_4:14429413-14429432 | Msa0152080:CDS | 35.0% |
| TGACAATGCCATGCAAATTT+AGG | + | chr1_4:14429586-14429605 | Msa0152070:intron | 35.0% | |
| ! | ATTGGTCCTTTTCAAAGATC+CGG | - | chr1_4:14429645-14429664 | Msa0152080:CDS | 35.0% |
| GTTCTACAGAGAAAGAAATG+TGG | - | chr1_4:14429771-14429790 | None:intergenic | 35.0% | |
| ! | GTCATCTTAATTTGGCTGTT+TGG | - | chr1_4:14429819-14429838 | None:intergenic | 35.0% |
| TAGAGAGAGATGAAAATCTC+TGG | - | chr1_4:14429995-14430014 | None:intergenic | 35.0% | |
| TAACCAAAAACAGAGCCAAA+CGG | + | chr1_4:14430013-14430032 | Msa0152070:intron | 35.0% | |
| TAAACTCTTTCTTCTCCGTT+TGG | - | chr1_4:14430031-14430050 | None:intergenic | 35.0% | |
| AAGAAAGAGTTTAGAAGCTC+TGG | + | chr1_4:14430038-14430057 | Msa0152070:intron | 35.0% | |
| ! | CATCTTTTGTGTGTTTTGTC+TGG | - | chr1_4:14430172-14430191 | None:intergenic | 35.0% |
| !! | TTTTGTGGATCTAGGACTAT+CGG | - | chr1_4:14430197-14430216 | None:intergenic | 35.0% |
| ATAGTCCTAGATCCACAAAA+GGG | + | chr1_4:14430197-14430216 | Msa0152070:intron | 35.0% | |
| ! | TAAAACCCTTTTGTGGATCT+AGG | - | chr1_4:14430205-14430224 | None:intergenic | 35.0% |
| GAATGTTACCTCAGTTAGAT+CGG | + | chr1_4:14430308-14430327 | Msa0152070:intron | 35.0% | |
| ! | TTGTTGAAGGGAAACTTGTT+AGG | + | chr1_4:14430520-14430539 | Msa0152070:intron | 35.0% |
| !! | TGTTGAAGGGAAACTTGTTA+GGG | + | chr1_4:14430521-14430540 | Msa0152070:intron | 35.0% |
| GACTTAAAAACTTCATCCAG+CGG | - | chr1_4:14430735-14430754 | None:intergenic | 35.0% | |
| !!! | CTGGATGAAGTTTTTAAGTC+TGG | + | chr1_4:14430735-14430754 | Msa0152070:intron | 35.0% |
| !!! | GATGAAGTTTTTAAGTCTGG+TGG | + | chr1_4:14430738-14430757 | Msa0152070:intron | 35.0% |
| ! | AGTGATTTTTGTACTAGTGG+TGG | + | chr1_4:14430793-14430812 | Msa0152070:intron | 35.0% |
| ! | ATTTTTGTACTAGTGGTGGT+TGG | + | chr1_4:14430797-14430816 | Msa0152070:intron | 35.0% |
| !! | TTGCAAGCACTTTGAGTTTT+GGG | + | chr1_4:14430826-14430845 | Msa0152070:CDS | 35.0% |
| TCGTGATGAATTTCAAAGAC+CGG | + | chr1_4:14430934-14430953 | Msa0152070:CDS | 35.0% | |
| AATATGATGCTTAGTGAAGG+AGG | + | chr1_4:14430965-14430984 | Msa0152070:CDS | 35.0% | |
| GTATTCTCCACATTCTCAAT+AGG | - | chr1_4:14430992-14431011 | None:intergenic | 35.0% | |
| CCCAAAACAAAACGATCAAA+AGG | + | chr1_4:14431058-14431077 | Msa0152070:CDS | 35.0% | |
| AAAACGATCAAAAGGAGGAA+TGG | + | chr1_4:14431066-14431085 | Msa0152070:CDS | 35.0% | |
| !! | CTGTACTTTTTGCAAGAGAA+GGG | + | chr1_4:14431111-14431130 | Msa0152070:CDS | 35.0% |
| !! | TGTACTTTTTGCAAGAGAAG+GGG | + | chr1_4:14431112-14431131 | Msa0152070:CDS | 35.0% |
| TGAACATGACTTTCTTTGTC+CGG | - | chr1_4:14431157-14431176 | None:intergenic | 35.0% | |
| !! | TCCTTTTCTTGGTGATTGTT+GGG | - | chr1_4:14431180-14431199 | None:intergenic | 35.0% |
| !! | TTCCTTTTCTTGGTGATTGT+TGG | - | chr1_4:14431181-14431200 | None:intergenic | 35.0% |
| CTTCCAAACAATGAACCATG+TGG | + | chr1_4:14425941-14425960 | Msa0152070:CDS | 40.0% | |
| CCACTTTCTGAATTACCACA+TGG | - | chr1_4:14425959-14425978 | None:intergenic | 40.0% | |
| CCATGTGGTAATTCAGAAAG+TGG | + | chr1_4:14425956-14425975 | Msa0152070:CDS | 40.0% | |
| GAGAATTATGCCAAAAGGAG+TGG | + | chr1_4:14426088-14426107 | Msa0152070:CDS | 40.0% | |
| ! | AATTGAGAACCCACTCCTTT+TGG | - | chr1_4:14426101-14426120 | None:intergenic | 40.0% |
| !!! | AGAGATTTGTTTTGTCACCG+TGG | + | chr1_4:14426163-14426182 | Msa0152070:CDS | 40.0% |
| AATAGACCATCTTCGAGATG+TGG | + | chr1_4:14426232-14426251 | Msa0152070:intron | 40.0% | |
| ! | AAATTTTGCGGTAGGATGCA+AGG | - | chr1_4:14426381-14426400 | None:intergenic | 40.0% |
| ! | GAAGCATGAGTTTTCTTCCT+TGG | - | chr1_4:14426608-14426627 | None:intergenic | 40.0% |
| TTTGTTGGAGTCGACAATCA+CGG | + | chr1_4:14426778-14426797 | Msa0152070:CDS | 40.0% | |
| CACGGCAGAACAATATTGTT+TGG | + | chr1_4:14426796-14426815 | Msa0152070:CDS | 40.0% | |
| ! | GGAAGATCAGAGAGCATAAA+TGG | + | chr1_4:14427140-14427159 | Msa0152070:CDS | 40.0% |
| ! | TTTTTGCCCAATGTCCTCAA+TGG | - | chr1_4:14427317-14427336 | None:intergenic | 40.0% |
| ACCATGTTGGATACATACAG+GGG | + | chr1_4:14427349-14427368 | Msa0152070:CDS | 40.0% | |
| TCGATCTTTATCCCCTTTAG+AGG | + | chr1_4:14427381-14427400 | Msa0152070:CDS | 40.0% | |
| ! | GTAATCTTGCTCCTCTAAAG+GGG | - | chr1_4:14427395-14427414 | None:intergenic | 40.0% |
| AATTTCAGGAGGAGTTTGAG+AGG | + | chr1_4:14427443-14427462 | Msa0152070:CDS | 40.0% | |
| ATTTCAGGAGGAGTTTGAGA+GGG | + | chr1_4:14427444-14427463 | Msa0152070:CDS | 40.0% | |
| GTGAACATCCGATTTATAGG+TGG | + | chr1_4:14427624-14427643 | Msa0152070:intron | 40.0% | |
| GTTTACATGACGAGACATTG+TGG | - | chr1_4:14427981-14428000 | Msa0152080:three_prime_UTR | 40.0% | |
| TGGCAAGGAGGAAAAATAGA+AGG | - | chr1_4:14428128-14428147 | Msa0152080:exon | 40.0% | |
| ATCCTTCTCTTGTTCACTTG+CGG | + | chr1_4:14428228-14428247 | Msa0152070:intron | 40.0% | |
| ! | CTTGTTCACTTGCGGATTTT+CGG | + | chr1_4:14428236-14428255 | Msa0152070:intron | 40.0% |
| GATAGTGAAACTGGTGTCTA+GGG | - | chr1_4:14428441-14428460 | Msa0152080:intron | 40.0% | |
| AGATAGTGAAACTGGTGTCT+AGG | - | chr1_4:14428442-14428461 | Msa0152080:intron | 40.0% | |
| GAAAAGATAAGGCCAACACA+AGG | - | chr1_4:14429014-14429033 | Msa0152080:CDS | 40.0% | |
| ! | CATGCCTTTTTACAGTCTGA+TGG | - | chr1_4:14429042-14429061 | Msa0152080:intron | 40.0% |
| AACATACTTACAGAACGACG+TGG | + | chr1_4:14429318-14429337 | Msa0152070:intron | 40.0% | |
| ! | CAAAGTATCAGTGAGAAGTG+TGG | - | chr1_4:14429348-14429367 | Msa0152080:CDS | 40.0% |
| AACATCCCTTGCTTCAGAAT+TGG | + | chr1_4:14429404-14429423 | Msa0152070:intron | 40.0% | |
| TCAAAGATCCGGTGAAAGTA+AGG | - | chr1_4:14429634-14429653 | Msa0152080:CDS | 40.0% | |
| ! | CTTTCACCGGATCTTTGAAA+AGG | + | chr1_4:14429636-14429655 | Msa0152070:intron | 40.0% |
| AGGACCAATCTGAATAGAAG+CGG | + | chr1_4:14429656-14429675 | Msa0152070:intron | 40.0% | |
| ! | TTTGCCGCTTCTATTCAGAT+TGG | - | chr1_4:14429663-14429682 | Msa0152080:intron | 40.0% |
| GGGAAAATATAGAAGGGGAT+GGG | + | chr1_4:14429912-14429931 | Msa0152070:intron | 40.0% | |
| AAATTAATTAACTCCGGCGG+CGG | - | chr1_4:14430079-14430098 | None:intergenic | 40.0% | |
| GGATGAAGCAAAAGGAGTTT+AGG | - | chr1_4:14430138-14430157 | None:intergenic | 40.0% | |
| GATAGTCCTAGATCCACAAA+AGG | + | chr1_4:14430196-14430215 | Msa0152070:intron | 40.0% | |
| ACGATGCAGATCGAAGAAAA+AGG | + | chr1_4:14430276-14430295 | Msa0152070:intron | 40.0% | |
| CGATGCAGATCGAAGAAAAA+GGG | + | chr1_4:14430277-14430296 | Msa0152070:intron | 40.0% | |
| TCAGTTAGATCGGAGAGAAA+CGG | + | chr1_4:14430318-14430337 | Msa0152070:intron | 40.0% | |
| ! | TGAACCAGATCGAAGTTTTC+CGG | - | chr1_4:14430355-14430374 | None:intergenic | 40.0% |
| !! | TTGACGCTTTGAGTTGAAGT+CGG | + | chr1_4:14430416-14430435 | Msa0152070:intron | 40.0% |
| TTTCCCTTCAACAACTGAAC+CGG | - | chr1_4:14430514-14430533 | None:intergenic | 40.0% | |
| GGCTCACCTGACTTAAAAAA+AGG | - | chr1_4:14430682-14430701 | None:intergenic | 40.0% | |
| !!! | CTTTTCTAAAACCTTACCGC+TGG | + | chr1_4:14430716-14430735 | Msa0152070:intron | 40.0% |
| AAAAACTTCATCCAGCGGTA+AGG | - | chr1_4:14430730-14430749 | None:intergenic | 40.0% | |
| !! | GTTGCAAGCACTTTGAGTTT+TGG | + | chr1_4:14430825-14430844 | Msa0152070:intron | 40.0% |
| !! | TGCAAGCACTTTGAGTTTTG+GGG | + | chr1_4:14430827-14430846 | Msa0152070:CDS | 40.0% |
| ! | CGTAATGGCAAGTAACTTGT+TGG | - | chr1_4:14430908-14430927 | None:intergenic | 40.0% |
| CAAGTTACTTGCCATTACGT+TGG | + | chr1_4:14430909-14430928 | Msa0152070:CDS | 40.0% | |
| ! | CCTTTTGTATTAGACCTTGG+CGG | - | chr1_4:14431034-14431053 | None:intergenic | 40.0% |
| ! | CGACCTTTTGTATTAGACCT+TGG | - | chr1_4:14431037-14431056 | None:intergenic | 40.0% |
| !! | GCTGTACTTTTTGCAAGAGA+AGG | + | chr1_4:14431110-14431129 | Msa0152070:CDS | 40.0% |
| !! | GTACTTTTTGCAAGAGAAGG+GGG | + | chr1_4:14431113-14431132 | Msa0152070:CDS | 40.0% |
| GCACAATGTTACAACTTGTC+CGG | + | chr1_4:14431135-14431154 | Msa0152070:CDS | 40.0% | |
| ACCCAACAATCACCAAGAAA+AGG | + | chr1_4:14431176-14431195 | Msa0152070:CDS | 40.0% | |
| ! | AGGGCAGTGTTTTCTAAGTG+AGG | + | chr1_4:14426045-14426064 | Msa0152070:CDS | 45.0% |
| !!! | GATTTGTTTTGTCACCGTGG+AGG | + | chr1_4:14426166-14426185 | Msa0152070:CDS | 45.0% |
| TTGCATCCACATCTCGAAGA+TGG | - | chr1_4:14426241-14426260 | None:intergenic | 45.0% | |
| ATCTTCGAGATGTGGATGCA+AGG | + | chr1_4:14426240-14426259 | Msa0152070:intron | 45.0% | |
| ! | GATTTTTCCAGAAGAGTGGC+AGG | + | chr1_4:14426297-14426316 | Msa0152070:intron | 45.0% |
| TCAATAACCTGCCACTCTTC+TGG | - | chr1_4:14426307-14426326 | None:intergenic | 45.0% | |
| ! | AGGAAGTGCACTTGATCTGA+AGG | - | chr1_4:14426361-14426380 | None:intergenic | 45.0% |
| GCAATAGCTTGAGTCATCCA+TGG | - | chr1_4:14427043-14427062 | None:intergenic | 45.0% | |
| ! | TTAGTGGGCATGACAACAAC+TGG | + | chr1_4:14427119-14427138 | Msa0152070:intron | 45.0% |
| !! | TTAGGTTGGTCTTGCCATTG+AGG | + | chr1_4:14427300-14427319 | Msa0152070:intron | 45.0% |
| GTCTTGCCATTGAGGACATT+GGG | + | chr1_4:14427308-14427327 | Msa0152070:CDS | 45.0% | |
| TCCCCTGTATGTATCCAACA+TGG | - | chr1_4:14427353-14427372 | None:intergenic | 45.0% | |
| CGGGTGAACATCCGATTTAT+AGG | + | chr1_4:14427621-14427640 | Msa0152070:intron | 45.0% | |
| TAGTGAGGTTATTGGCAAGG+AGG | - | chr1_4:14428140-14428159 | Msa0152080:CDS | 45.0% | |
| CCATAGTGAGGTTATTGGCA+AGG | - | chr1_4:14428143-14428162 | Msa0152080:CDS | 45.0% | |
| CCTTGCCAATAACCTCACTA+TGG | + | chr1_4:14428140-14428159 | Msa0152070:intron | 45.0% | |
| TTGGGCCATAGTGAGGTTAT+TGG | - | chr1_4:14428148-14428167 | Msa0152080:CDS | 45.0% | |
| GCAAGTGAACAAGAGAAGGA+TGG | - | chr1_4:14428229-14428248 | Msa0152080:CDS | 45.0% | |
| ATCCGCAAGTGAACAAGAGA+AGG | - | chr1_4:14428233-14428252 | Msa0152080:CDS | 45.0% | |
| ATACCTTATTCCTCACGTCG+TGG | + | chr1_4:14428842-14428861 | Msa0152070:intron | 45.0% | |
| AGAACGCCAATTAATGCAGC+AGG | - | chr1_4:14428920-14428939 | Msa0152080:CDS | 45.0% | |
| AATGACCAAGGCTGAAGTCA+CGG | - | chr1_4:14428956-14428975 | Msa0152080:CDS | 45.0% | |
| TGGTACATGAACCCTTGTGT+TGG | + | chr1_4:14428999-14429018 | Msa0152070:intron | 45.0% | |
| TCAGTTGATCGAAGATCGTG+TGG | - | chr1_4:14429460-14429479 | Msa0152080:intron | 45.0% | |
| AAGATCCGGTGAAAGTAAGG+CGG | - | chr1_4:14429631-14429650 | Msa0152080:CDS | 45.0% | |
| !! | AAACTTGGAGGCATCACTAC+AGG | + | chr1_4:14429845-14429864 | Msa0152070:intron | 45.0% |
| GGGGAAAATATAGAAGGGGA+TGG | + | chr1_4:14429911-14429930 | Msa0152070:intron | 45.0% | |
| !!! | TCTCCGTTTGGCTCTGTTTT+TGG | - | chr1_4:14430019-14430038 | None:intergenic | 45.0% |
| GTTTCTCTCCGATCTAACTG+AGG | - | chr1_4:14430319-14430338 | None:intergenic | 45.0% | |
| CTTTCTTCACGAACCTGACT+CGG | + | chr1_4:14430461-14430480 | Msa0152070:intron | 45.0% | |
| ! | GTCGTTGTTGTTGAAGAAGC+CGG | + | chr1_4:14430492-14430511 | Msa0152070:intron | 45.0% |
| ! | AAGCCGGTTCAGTTGTTGAA+GGG | + | chr1_4:14430508-14430527 | Msa0152070:intron | 45.0% |
| AAGCCTGAAGTGAAGTGTGT+GGG | + | chr1_4:14430615-14430634 | Msa0152070:intron | 45.0% | |
| AAACCCACACACTTCACTTC+AGG | - | chr1_4:14430621-14430640 | None:intergenic | 45.0% | |
| TGAAGTGAAGTGTGTGGGTT+TGG | + | chr1_4:14430620-14430639 | Msa0152070:intron | 45.0% | |
| TCATCACGACACCAACGTAA+TGG | - | chr1_4:14430923-14430942 | None:intergenic | 45.0% | |
| AGGAGGACCTATTGAGAATG+TGG | + | chr1_4:14430982-14431001 | Msa0152070:CDS | 45.0% | |
| CCGCCAAGGTCTAATACAAA+AGG | + | chr1_4:14431031-14431050 | Msa0152070:CDS | 45.0% | |
| !!! | ATAAATTTATTCTAAATTTT+AGG | + | chr1_4:14427282-14427301 | Msa0152070:intron | 5.0% |
| !!! | TAAAATCTTTTAATTTAAAT+CGG | + | chr1_4:14427730-14427749 | Msa0152070:intron | 5.0% |
| CAACAGCATCTCCATACCGT+TGG | - | chr1_4:14426708-14426727 | None:intergenic | 50.0% | |
| GGTCTTGCCATTGAGGACAT+TGG | + | chr1_4:14427307-14427326 | Msa0152070:CDS | 50.0% | |
| ! | TGATGCTTTGGGCCATAGTG+AGG | - | chr1_4:14428155-14428174 | Msa0152080:CDS | 50.0% |
| ! | CGTCTATGGTGGAATGACCA+AGG | - | chr1_4:14428968-14428987 | Msa0152080:CDS | 50.0% |
| GTGAGTGAGAACGTCTATGG+TGG | - | chr1_4:14428979-14428998 | Msa0152080:CDS | 50.0% | |
| CCAGTGAGTGAGAACGTCTA+TGG | - | chr1_4:14428982-14429001 | Msa0152080:CDS | 50.0% | |
| CCATAGACGTTCTCACTCAC+TGG | + | chr1_4:14428979-14428998 | Msa0152070:intron | 50.0% | |
| AACTCCCGCCTTACTTTCAC+CGG | + | chr1_4:14429623-14429642 | Msa0152070:intron | 50.0% | |
| AGATCCGGTGAAAGTAAGGC+GGG | - | chr1_4:14429630-14429649 | Msa0152080:CDS | 50.0% | |
| ! | AGAGTTTAGAAGCTCTGGCG+CGG | + | chr1_4:14430043-14430062 | Msa0152070:intron | 50.0% |
| AGAAACGGCAAAGAACGCAC+CGG | + | chr1_4:14430333-14430352 | Msa0152070:intron | 50.0% | |
| ! | GAAGCCGGTTCAGTTGTTGA+AGG | + | chr1_4:14430507-14430526 | Msa0152070:intron | 50.0% |
| GAAGCCTGAAGTGAAGTGTG+TGG | + | chr1_4:14430614-14430633 | Msa0152070:intron | 50.0% | |
| CAAGAGCCTGCTAGAGACTG+GGG | - | chr1_4:14428200-14428219 | Msa0152080:CDS | 55.0% | |
| CCAAGAGCCTGCTAGAGACT+GGG | - | chr1_4:14428201-14428220 | Msa0152080:CDS | 55.0% | |
| TCCAAGAGCCTGCTAGAGAC+TGG | - | chr1_4:14428202-14428221 | Msa0152080:CDS | 55.0% | |
| CGTCCACGACGTGAGGAATA+AGG | - | chr1_4:14428848-14428867 | Msa0152080:CDS | 55.0% | |
| AGTCTTACGTCCACGACGTG+AGG | - | chr1_4:14428855-14428874 | Msa0152080:CDS | 55.0% | |
| AGCTTCCGTGACTTCAGCCT+TGG | + | chr1_4:14428948-14428967 | Msa0152070:intron | 55.0% | |
| ! | GAGTTTAGAAGCTCTGGCGC+GGG | + | chr1_4:14430044-14430063 | Msa0152070:intron | 55.0% |
| ! | AGTTTAGAAGCTCTGGCGCG+GGG | + | chr1_4:14430045-14430064 | Msa0152070:intron | 55.0% |
| CGCACCGGAAAACTTCGATC+TGG | + | chr1_4:14430348-14430367 | Msa0152070:intron | 55.0% | |
| ACGACAAACGCATCCGAGTC+AGG | - | chr1_4:14430477-14430496 | None:intergenic | 55.0% | |
| GCCATTCCCCAGTCTCTAGC+AGG | + | chr1_4:14428191-14428210 | Msa0152070:intron | 60.0% | |
| GCCTGCTAGAGACTGGGGAA+TGG | - | chr1_4:14428195-14428214 | Msa0152080:CDS | 60.0% | |
| CCCAGTCTCTAGCAGGCTCT+TGG | + | chr1_4:14428198-14428217 | Msa0152070:intron | 60.0% | |
| ! | TTAGAAGCTCTGGCGCGGGG+TGG | + | chr1_4:14430048-14430067 | Msa0152070:intron | 65.0% |
| ! | GAAGCTCTGGCGCGGGGTGG+CGG | + | chr1_4:14430051-14430070 | Msa0152070:intron | 75.0% |
| !!! | CGGGGTGGCGGTGCCGCCGC+CGG | + | chr1_4:14430063-14430082 | Msa0152070:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14425908 | 14431255 | 14425908 | ID=Msa0152070;Name=Msa0152070 |
| chr1_4 | mRNA | 14425908 | 14431255 | 14425908 | ID=Msa0152070-mRNA-1;Parent=Msa0152070;Name=Msa0152070-mRNA-1;_AED=0.12;_eAED=0.20;_QI=0|0|0|1|0|0.11|9|0|504 |
| chr1_4 | exon | 14425908 | 14426127 | 14425908 | ID=Msa0152070-mRNA-1:exon:5728;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14426162 | 14426250 | 14426162 | ID=Msa0152070-mRNA-1:exon:5729;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14426319 | 14426489 | 14426319 | ID=Msa0152070-mRNA-1:exon:5730;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14426547 | 14426723 | 14426547 | ID=Msa0152070-mRNA-1:exon:5731;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14426748 | 14426874 | 14426748 | ID=Msa0152070-mRNA-1:exon:5732;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14427123 | 14427217 | 14427123 | ID=Msa0152070-mRNA-1:exon:5733;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14427304 | 14427498 | 14427304 | ID=Msa0152070-mRNA-1:exon:5734;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14427503 | 14427510 | 14427503 | ID=Msa0152070-mRNA-1:exon:5735;Parent=Msa0152070-mRNA-1 |
| chr1_4 | exon | 14430826 | 14431255 | 14430826 | ID=Msa0152070-mRNA-1:exon:5736;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14425908 | 14426127 | 14425908 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14426162 | 14426250 | 14426162 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14426319 | 14426489 | 14426319 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14426547 | 14426723 | 14426547 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14426748 | 14426874 | 14426748 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14427123 | 14427217 | 14427123 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14427304 | 14427498 | 14427304 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14427503 | 14427510 | 14427503 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| chr1_4 | CDS | 14430826 | 14431255 | 14430826 | ID=Msa0152070-mRNA-1:cds;Parent=Msa0152070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
