Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152080 | XP_003617525.2 | 88.235 | 187 | 22 | 0 | 8 | 194 | 462 | 648 | 8.02e-106 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152080 | sp|Q9SAB1|HSP7Q_ARATH | 43.915 | 189 | 87 | 5 | 3 | 189 | 458 | 629 | 1.34e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152080 | G7K8I3 | 88.235 | 187 | 22 | 0 | 8 | 194 | 462 | 648 | 3.83e-106 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0152080 | Msa0285670 | 0.823156 | 1.611767e-53 | -8.615850e-47 |
| Msa0152080 | Msa0697390 | 0.805585 | 1.243188e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152080 | MtrunA17_Chr3g0098761 | 50.505 | 198 | 85 | 3 | 3 | 194 | 451 | 641 | 2.50e-52 | 179 |
| Msa0152080 | MtrunA17_Chr5g0444001 | 91.358 | 81 | 7 | 0 | 8 | 88 | 462 | 542 | 2.54e-42 | 149 |
| Msa0152080 | MtrunA17_Chr5g0444011 | 84.146 | 82 | 13 | 0 | 113 | 194 | 1 | 82 | 2.83e-41 | 138 |
| Msa0152080 | MtrunA17_Chr2g0331901 | 33.816 | 207 | 112 | 3 | 8 | 189 | 465 | 671 | 8.88e-28 | 109 |
| Msa0152080 | MtrunA17_Chr4g0004331 | 30.769 | 208 | 115 | 4 | 8 | 189 | 467 | 671 | 1.16e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152080 | AT1G11660.2 | 43.915 | 189 | 87 | 5 | 3 | 189 | 421 | 592 | 1.07e-36 | 135 |
| Msa0152080 | AT1G11660.4 | 43.915 | 189 | 87 | 5 | 3 | 189 | 458 | 629 | 1.37e-36 | 135 |
| Msa0152080 | AT1G11660.3 | 43.915 | 189 | 87 | 5 | 3 | 189 | 458 | 629 | 1.37e-36 | 135 |
| Msa0152080 | AT1G11660.1 | 43.915 | 189 | 87 | 5 | 3 | 189 | 458 | 629 | 1.37e-36 | 135 |
| Msa0152080 | AT1G79930.1 | 33.981 | 206 | 110 | 4 | 8 | 189 | 467 | 670 | 1.25e-26 | 107 |
| Msa0152080 | AT1G79930.2 | 33.981 | 206 | 110 | 4 | 8 | 189 | 467 | 670 | 1.63e-26 | 106 |
| Msa0152080 | AT1G79920.1 | 33.708 | 178 | 92 | 4 | 8 | 161 | 467 | 642 | 5.96e-21 | 90.5 |
| Msa0152080 | AT1G79920.3 | 34.270 | 178 | 91 | 4 | 8 | 161 | 467 | 642 | 7.55e-20 | 87.4 |
| Msa0152080 | AT1G79920.2 | 34.270 | 178 | 91 | 4 | 8 | 161 | 467 | 642 | 7.55e-20 | 87.4 |
| Msa0152080 | AT1G79920.4 | 34.270 | 178 | 91 | 4 | 8 | 161 | 467 | 642 | 7.55e-20 | 87.4 |
Find 53 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATATCCTGCTGCATTAAT+TGG | 0.189410 | 1_4:+14428911 | Msa0152070:intron |
| GATAAGACTTTGCAAATTCT+AGG | 0.257756 | 1_4:-14428097 | Msa0152080:three_prime_UTR |
| AACATCCCTTGCTTCAGAAT+TGG | 0.304791 | 1_4:+14429404 | Msa0152070:intron |
| TTGGGCCATAGTGAGGTTAT+TGG | 0.310419 | 1_4:-14428145 | Msa0152080:CDS |
| TGACAATGCCATGCAAATTT+AGG | 0.316149 | 1_4:+14429586 | Msa0152070:intron |
| CGTCCACGACGTGAGGAATA+AGG | 0.324045 | 1_4:-14428845 | Msa0152080:intron |
| GTCAAATTACAAAATAATTC+TGG | 0.327460 | 1_4:+14427954 | Msa0152070:intron |
| CAATGATTCAGTTGATGCTT+TGG | 0.331660 | 1_4:-14428164 | Msa0152080:CDS |
| AATGATTCAGTTGATGCTTT+GGG | 0.368890 | 1_4:-14428163 | Msa0152080:CDS |
| AAAAGACAAGAGGAACTCTT+TGG | 0.399396 | 1_4:-14428875 | Msa0152080:CDS |
| TCCAAGAGCCTGCTAGAGAC+TGG | 0.401045 | 1_4:-14428199 | Msa0152080:CDS |
| AGCTTCCGTGACTTCAGCCT+TGG | 0.410602 | 1_4:+14428948 | Msa0152070:intron |
| CCCAGTCTCTAGCAGGCTCT+TGG | 0.420927 | 1_4:+14428198 | Msa0152070:intron |
| TCAAAGATCCGGTGAAAGTA+AGG | 0.425329 | 1_4:-14429631 | Msa0152080:CDS |
| AACTCCCGCCTTACTTTCAC+CGG | 0.428179 | 1_4:+14429623 | Msa0152070:intron |
| AATGTGGTTACATAGTAATA+AGG | 0.431872 | 1_4:-14429752 | Msa0152080:intron |
| CCTTGCCAATAACCTCACTA+TGG | 0.450168 | 1_4:+14428140 | Msa0152070:intron |
| ATCCTTCTCTTGTTCACTTG+CGG | 0.459865 | 1_4:+14428228 | Msa0152070:intron |
| CTTTCACCGGATCTTTGAAA+AGG | 0.475612 | 1_4:+14429636 | Msa0152070:intron |
| CCAGTGAGTGAGAACGTCTA+TGG | 0.506949 | 1_4:-14428979 | Msa0152080:CDS |
| GCCATTCCCCAGTCTCTAGC+AGG | 0.509346 | 1_4:+14428191 | Msa0152070:intron |
| AGAACGCCAATTAATGCAGC+AGG | 0.511677 | 1_4:-14428917 | Msa0152080:CDS |
| ATCAATCCAATTCTGAAGCA+AGG | 0.513410 | 1_4:-14429410 | Msa0152080:CDS |
| CCAAGAGCCTGCTAGAGACT+GGG | 0.523743 | 1_4:-14428198 | Msa0152080:CDS |
| CCATAGACGTTCTCACTCAC+TGG | 0.533230 | 1_4:+14428979 | Msa0152070:intron |
| AGAATTGACCTAAATTTGCA+TGG | 0.541563 | 1_4:-14429594 | Msa0152080:CDS |
| TGATGGTACAAGAAAAGATA+AGG | 0.545253 | 1_4:-14429022 | Msa0152080:CDS |
| ATCCGCAAGTGAACAAGAGA+AGG | 0.570817 | 1_4:-14428230 | Msa0152080:CDS |
| GCCTGCTAGAGACTGGGGAA+TGG | 0.572859 | 1_4:-14428192 | Msa0152080:CDS |
| TCAATCCAATTCTGAAGCAA+GGG | 0.574093 | 1_4:-14429409 | Msa0152080:CDS |
| AGATCCGGTGAAAGTAAGGC+GGG | 0.582264 | 1_4:-14429627 | Msa0152080:CDS |
| TGATGCTTTGGGCCATAGTG+AGG | 0.588027 | 1_4:-14428152 | Msa0152080:CDS |
| CCATAGTGAGGTTATTGGCA+AGG | 0.596332 | 1_4:-14428140 | Msa0152080:CDS |
| AATGACCAAGGCTGAAGTCA+CGG | 0.602995 | 1_4:-14428953 | Msa0152080:CDS |
| GAAAAGATAAGGCCAACACA+AGG | 0.604509 | 1_4:-14429011 | Msa0152080:CDS |
| AATTTGCAAAGTCTTATCAT+CGG | 0.605870 | 1_4:+14428102 | Msa0152070:intron |
| AGTCTTACGTCCACGACGTG+AGG | 0.617209 | 1_4:-14428852 | Msa0152080:CDS |
| AATAAGCTATTAACATGACA+TGG | 0.619044 | 1_4:+14428035 | Msa0152070:intron |
| GTGAGTGAGAACGTCTATGG+TGG | 0.630720 | 1_4:-14428976 | Msa0152080:CDS |
| TCAGTTGATCGAAGATCGTG+TGG | 0.631614 | 1_4:-14429457 | Msa0152080:intron |
| TGGAGTTAACAAAAGACAAG+AGG | 0.632388 | 1_4:-14428885 | Msa0152080:CDS |
| CAAAGTATCAGTGAGAAGTG+TGG | 0.632983 | 1_4:-14429345 | Msa0152080:CDS |
| TGGTACATGAACCCTTGTGT+TGG | 0.635852 | 1_4:+14428999 | Msa0152070:intron |
| GCAAGTGAACAAGAGAAGGA+TGG | 0.642555 | 1_4:-14428226 | Msa0152080:CDS |
| AAAAGATAAGGCCAACACAA+GGG | 0.643455 | 1_4:-14429010 | Msa0152080:CDS |
| GTTTACATGACGAGACATTG+TGG | 0.651786 | 1_4:-14427978 | Msa0152080:three_prime_UTR |
| ATACCTTATTCCTCACGTCG+TGG | 0.662917 | 1_4:+14428842 | Msa0152070:intron |
| CAAGAGCCTGCTAGAGACTG+GGG | 0.667474 | 1_4:-14428197 | Msa0152080:CDS |
| AAGATCCGGTGAAAGTAAGG+CGG | 0.672893 | 1_4:-14429628 | Msa0152080:CDS |
| CGTCTATGGTGGAATGACCA+AGG | 0.675316 | 1_4:-14428965 | Msa0152080:CDS |
| AATGCAGCAGGATATAACAA+TGG | 0.684049 | 1_4:-14428905 | Msa0152080:CDS |
| TAGTGAGGTTATTGGCAAGG+AGG | 0.694872 | 1_4:-14428137 | Msa0152080:CDS |
| AACATACTTACAGAACGACG+TGG | 0.752245 | 1_4:+14429318 | Msa0152070:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTGAAGAGATTAAAATT+AGG | + | chr1_4:14428122-14428141 | Msa0152070:intron | 20.0% |
| !! | AGATATTCCATTTAAAAAAG+GGG | + | chr1_4:14428370-14428389 | Msa0152070:intron | 20.0% |
| !! | GAGATATTCCATTTAAAAAA+GGG | + | chr1_4:14428371-14428390 | Msa0152070:intron | 20.0% |
| !! | TGAGATATTCCATTTAAAAA+AGG | + | chr1_4:14428372-14428391 | Msa0152070:intron | 20.0% |
| !! | TCAGATAAAATTTAGCTATA+CGG | + | chr1_4:14428438-14428457 | Msa0152070:intron | 20.0% |
| !! | ATCTTAATAAGATACATACA+TGG | - | chr1_4:14428843-14428862 | Msa0152080:intron | 20.0% |
| !! | CAATACTTTCATATTATCAT+AGG | + | chr1_4:14428925-14428944 | Msa0152070:intron | 20.0% |
| !! | TATGCCTATTATTTAATACA+TGG | - | chr1_4:14429311-14429330 | Msa0152080:intron | 20.0% |
| !! | AAAGCCATGTATTAAATAAT+AGG | + | chr1_4:14429318-14429337 | Msa0152070:intron | 20.0% |
| !! | GTCAAATTACAAAATAATTC+TGG | + | chr1_4:14429702-14429721 | Msa0152070:intron | 20.0% |
| !! | ACATTGAAGAGATTAAAATT+AGG | + | chr1_4:14428122-14428141 | Msa0152070:intron | 20.0% |
| !! | AGATATTCCATTTAAAAAAG+GGG | + | chr1_4:14428370-14428389 | Msa0152070:intron | 20.0% |
| !! | GAGATATTCCATTTAAAAAA+GGG | + | chr1_4:14428371-14428390 | Msa0152070:intron | 20.0% |
| !! | TGAGATATTCCATTTAAAAA+AGG | + | chr1_4:14428372-14428391 | Msa0152070:intron | 20.0% |
| !! | TCAGATAAAATTTAGCTATA+CGG | + | chr1_4:14428438-14428457 | Msa0152070:intron | 20.0% |
| !! | ATCTTAATAAGATACATACA+TGG | - | chr1_4:14428843-14428862 | Msa0152080:intron | 20.0% |
| !! | CAATACTTTCATATTATCAT+AGG | + | chr1_4:14428925-14428944 | Msa0152070:intron | 20.0% |
| !! | TATGCCTATTATTTAATACA+TGG | - | chr1_4:14429311-14429330 | Msa0152080:intron | 20.0% |
| !! | AAAGCCATGTATTAAATAAT+AGG | + | chr1_4:14429318-14429337 | Msa0152070:intron | 20.0% |
| !! | GTCAAATTACAAAATAATTC+TGG | + | chr1_4:14429702-14429721 | Msa0152070:intron | 20.0% |
| ! | GGTTATATCAGTGATTAAAA+AGG | - | chr1_4:14427922-14427941 | Msa0152080:three_prime_UTR | 25.0% |
| ! | TAAGCATTATGACAATGTAT+AGG | + | chr1_4:14427965-14427984 | Msa0152070:intron | 25.0% |
| ! | ATTGCAGATATGATTTATGT+TGG | - | chr1_4:14428564-14428583 | Msa0152080:intron | 25.0% |
| ! | TTTCAAATGTGAATGAGAAA+AGG | - | chr1_4:14428949-14428968 | Msa0152080:CDS | 25.0% |
| ! | TATCAAATGAGAATGAGAAA+AGG | - | chr1_4:14429114-14429133 | Msa0152080:intron | 25.0% |
| !!! | TCAATGATGAATTGATTTTC+AGG | - | chr1_4:14429148-14429167 | Msa0152080:intron | 25.0% |
| !!! | CAATGATGAATTGATTTTCA+GGG | - | chr1_4:14429149-14429168 | Msa0152080:intron | 25.0% |
| ! | CTGATTCATGAATAAATGTA+AGG | - | chr1_4:14429183-14429202 | Msa0152080:intron | 25.0% |
| ! | TTAAACTAAGATAGTGAAAC+TGG | - | chr1_4:14429206-14429225 | Msa0152080:intron | 25.0% |
| !! | AATTTGCAAAGTCTTATCAT+CGG | + | chr1_4:14429554-14429573 | Msa0152070:intron | 25.0% |
| ! | AATAAGCTATTAACATGACA+TGG | + | chr1_4:14429621-14429640 | Msa0152070:intron | 25.0% |
| ! | GGTTATATCAGTGATTAAAA+AGG | - | chr1_4:14427922-14427941 | Msa0152080:three_prime_UTR | 25.0% |
| ! | TAAGCATTATGACAATGTAT+AGG | + | chr1_4:14427965-14427984 | Msa0152070:intron | 25.0% |
| ! | ATTGCAGATATGATTTATGT+TGG | - | chr1_4:14428564-14428583 | Msa0152080:intron | 25.0% |
| ! | TTTCAAATGTGAATGAGAAA+AGG | - | chr1_4:14428949-14428968 | Msa0152080:CDS | 25.0% |
| ! | TATCAAATGAGAATGAGAAA+AGG | - | chr1_4:14429114-14429133 | Msa0152080:intron | 25.0% |
| !!! | TCAATGATGAATTGATTTTC+AGG | - | chr1_4:14429148-14429167 | Msa0152080:intron | 25.0% |
| !!! | CAATGATGAATTGATTTTCA+GGG | - | chr1_4:14429149-14429168 | Msa0152080:intron | 25.0% |
| ! | CTGATTCATGAATAAATGTA+AGG | - | chr1_4:14429183-14429202 | Msa0152080:intron | 25.0% |
| ! | TTAAACTAAGATAGTGAAAC+TGG | - | chr1_4:14429206-14429225 | Msa0152080:intron | 25.0% |
| !! | AATTTGCAAAGTCTTATCAT+CGG | + | chr1_4:14429554-14429573 | Msa0152070:intron | 25.0% |
| ! | AATAAGCTATTAACATGACA+TGG | + | chr1_4:14429621-14429640 | Msa0152070:intron | 25.0% |
| AGAATTGACCTAAATTTGCA+TGG | - | chr1_4:14428059-14428078 | Msa0152080:three_prime_UTR | 30.0% | |
| GATCAACTGAAGACAAATAA+AGG | + | chr1_4:14428186-14428205 | Msa0152070:intron | 30.0% | |
| ! | TTTTGTTCTGTCTCAGAAAT+GGG | + | chr1_4:14428278-14428297 | Msa0152070:intron | 30.0% |
| ! | ATTTTGTTCTGTCTCAGAAA+TGG | + | chr1_4:14428279-14428298 | Msa0152070:intron | 30.0% |
| !!! | TGATGAACCCCTTTTTTAAA+TGG | - | chr1_4:14428360-14428379 | Msa0152080:intron | 30.0% |
| TAAATTATATGCAGTCTCTC+AGG | - | chr1_4:14428471-14428490 | Msa0152080:intron | 30.0% | |
| TGATGGTACAAGAAAAGATA+AGG | - | chr1_4:14428631-14428650 | Msa0152080:intron | 30.0% | |
| TTATATCCTGCTGCATTAAT+TGG | + | chr1_4:14428745-14428764 | Msa0152070:intron | 30.0% | |
| !! | TTCATATCTAGCTTTGACTT+TGG | - | chr1_4:14428900-14428919 | Msa0152080:CDS | 30.0% |
| ! | TCAACACTTTTACATTACGA+AGG | + | chr1_4:14429091-14429110 | Msa0152070:intron | 30.0% |
| ATAGGCATAAAAGACAAAGA+AGG | + | chr1_4:14429300-14429319 | Msa0152070:intron | 30.0% | |
| GTATGTTCTATATTTCCTGA+TGG | - | chr1_4:14429344-14429363 | Msa0152080:CDS | 30.0% | |
| TTATTAAATACCAGTCCATC+AGG | + | chr1_4:14429362-14429381 | Msa0152070:intron | 30.0% | |
| ! | AATGATTCAGTTGATGCTTT+GGG | - | chr1_4:14429490-14429509 | Msa0152080:intron | 30.0% |
| GATAAGACTTTGCAAATTCT+AGG | - | chr1_4:14429556-14429575 | Msa0152080:intron | 30.0% | |
| AGAATTGACCTAAATTTGCA+TGG | - | chr1_4:14428059-14428078 | Msa0152080:three_prime_UTR | 30.0% | |
| GATCAACTGAAGACAAATAA+AGG | + | chr1_4:14428186-14428205 | Msa0152070:intron | 30.0% | |
| ! | TTTTGTTCTGTCTCAGAAAT+GGG | + | chr1_4:14428278-14428297 | Msa0152070:intron | 30.0% |
| ! | ATTTTGTTCTGTCTCAGAAA+TGG | + | chr1_4:14428279-14428298 | Msa0152070:intron | 30.0% |
| !!! | TGATGAACCCCTTTTTTAAA+TGG | - | chr1_4:14428360-14428379 | Msa0152080:intron | 30.0% |
| TAAATTATATGCAGTCTCTC+AGG | - | chr1_4:14428471-14428490 | Msa0152080:intron | 30.0% | |
| TGATGGTACAAGAAAAGATA+AGG | - | chr1_4:14428631-14428650 | Msa0152080:intron | 30.0% | |
| TTATATCCTGCTGCATTAAT+TGG | + | chr1_4:14428745-14428764 | Msa0152070:intron | 30.0% | |
| !! | TTCATATCTAGCTTTGACTT+TGG | - | chr1_4:14428900-14428919 | Msa0152080:CDS | 30.0% |
| ! | TCAACACTTTTACATTACGA+AGG | + | chr1_4:14429091-14429110 | Msa0152070:intron | 30.0% |
| ATAGGCATAAAAGACAAAGA+AGG | + | chr1_4:14429300-14429319 | Msa0152070:intron | 30.0% | |
| GTATGTTCTATATTTCCTGA+TGG | - | chr1_4:14429344-14429363 | Msa0152080:CDS | 30.0% | |
| TTATTAAATACCAGTCCATC+AGG | + | chr1_4:14429362-14429381 | Msa0152070:intron | 30.0% | |
| ! | AATGATTCAGTTGATGCTTT+GGG | - | chr1_4:14429490-14429509 | Msa0152080:intron | 30.0% |
| GATAAGACTTTGCAAATTCT+AGG | - | chr1_4:14429556-14429575 | Msa0152080:intron | 30.0% | |
| ! | ATTGGTCCTTTTCAAAGATC+CGG | - | chr1_4:14428011-14428030 | Msa0152080:three_prime_UTR | 35.0% |
| TGACAATGCCATGCAAATTT+AGG | + | chr1_4:14428070-14428089 | Msa0152070:intron | 35.0% | |
| !! | ATCAATCCAATTCTGAAGCA+AGG | - | chr1_4:14428243-14428262 | Msa0152080:CDS | 35.0% |
| !! | TCAATCCAATTCTGAAGCAA+GGG | - | chr1_4:14428244-14428263 | Msa0152080:CDS | 35.0% |
| TGTACCATCAGACTGTAAAA+AGG | + | chr1_4:14428621-14428640 | Msa0152070:intron | 35.0% | |
| AAAAGATAAGGCCAACACAA+GGG | - | chr1_4:14428643-14428662 | Msa0152080:intron | 35.0% | |
| AATGCAGCAGGATATAACAA+TGG | - | chr1_4:14428748-14428767 | Msa0152080:intron | 35.0% | |
| TGGAGTTAACAAAAGACAAG+AGG | - | chr1_4:14428768-14428787 | Msa0152080:intron | 35.0% | |
| AAAAGACAAGAGGAACTCTT+TGG | - | chr1_4:14428778-14428797 | Msa0152080:intron | 35.0% | |
| GACTTGATGTAGCAAATGTT+AGG | - | chr1_4:14429006-14429025 | Msa0152080:CDS | 35.0% | |
| !! | TGAATTGATTTTCAGGGACT+TGG | - | chr1_4:14429155-14429174 | Msa0152080:intron | 35.0% |
| ! | TTCTATATTTCCTGATGGAC+TGG | - | chr1_4:14429349-14429368 | Msa0152080:CDS | 35.0% |
| ! | CAATGATTCAGTTGATGCTT+TGG | - | chr1_4:14429489-14429508 | Msa0152080:intron | 35.0% |
| ! | ATTGGTCCTTTTCAAAGATC+CGG | - | chr1_4:14428011-14428030 | Msa0152080:three_prime_UTR | 35.0% |
| TGACAATGCCATGCAAATTT+AGG | + | chr1_4:14428070-14428089 | Msa0152070:intron | 35.0% | |
| !! | ATCAATCCAATTCTGAAGCA+AGG | - | chr1_4:14428243-14428262 | Msa0152080:CDS | 35.0% |
| !! | TCAATCCAATTCTGAAGCAA+GGG | - | chr1_4:14428244-14428263 | Msa0152080:CDS | 35.0% |
| TGTACCATCAGACTGTAAAA+AGG | + | chr1_4:14428621-14428640 | Msa0152070:intron | 35.0% | |
| AAAAGATAAGGCCAACACAA+GGG | - | chr1_4:14428643-14428662 | Msa0152080:intron | 35.0% | |
| AATGCAGCAGGATATAACAA+TGG | - | chr1_4:14428748-14428767 | Msa0152080:intron | 35.0% | |
| TGGAGTTAACAAAAGACAAG+AGG | - | chr1_4:14428768-14428787 | Msa0152080:intron | 35.0% | |
| AAAAGACAAGAGGAACTCTT+TGG | - | chr1_4:14428778-14428797 | Msa0152080:intron | 35.0% | |
| GACTTGATGTAGCAAATGTT+AGG | - | chr1_4:14429006-14429025 | Msa0152080:CDS | 35.0% | |
| !! | TGAATTGATTTTCAGGGACT+TGG | - | chr1_4:14429155-14429174 | Msa0152080:intron | 35.0% |
| ! | TTCTATATTTCCTGATGGAC+TGG | - | chr1_4:14429349-14429368 | Msa0152080:CDS | 35.0% |
| ! | CAATGATTCAGTTGATGCTT+TGG | - | chr1_4:14429489-14429508 | Msa0152080:intron | 35.0% |
| ! | TTTGCCGCTTCTATTCAGAT+TGG | - | chr1_4:14427993-14428012 | Msa0152080:three_prime_UTR | 40.0% |
| AGGACCAATCTGAATAGAAG+CGG | + | chr1_4:14428000-14428019 | Msa0152070:intron | 40.0% | |
| ! | CTTTCACCGGATCTTTGAAA+AGG | + | chr1_4:14428020-14428039 | Msa0152070:intron | 40.0% |
| TCAAAGATCCGGTGAAAGTA+AGG | - | chr1_4:14428022-14428041 | Msa0152080:three_prime_UTR | 40.0% | |
| AACATCCCTTGCTTCAGAAT+TGG | + | chr1_4:14428252-14428271 | Msa0152070:intron | 40.0% | |
| ! | CAAAGTATCAGTGAGAAGTG+TGG | - | chr1_4:14428308-14428327 | Msa0152080:intron | 40.0% |
| AACATACTTACAGAACGACG+TGG | + | chr1_4:14428338-14428357 | Msa0152070:intron | 40.0% | |
| ! | CATGCCTTTTTACAGTCTGA+TGG | - | chr1_4:14428614-14428633 | Msa0152080:intron | 40.0% |
| GAAAAGATAAGGCCAACACA+AGG | - | chr1_4:14428642-14428661 | Msa0152080:intron | 40.0% | |
| AGATAGTGAAACTGGTGTCT+AGG | - | chr1_4:14429214-14429233 | Msa0152080:intron | 40.0% | |
| GATAGTGAAACTGGTGTCTA+GGG | - | chr1_4:14429215-14429234 | Msa0152080:intron | 40.0% | |
| ! | CTTGTTCACTTGCGGATTTT+CGG | + | chr1_4:14429420-14429439 | Msa0152070:intron | 40.0% |
| ATCCTTCTCTTGTTCACTTG+CGG | + | chr1_4:14429428-14429447 | Msa0152070:intron | 40.0% | |
| TGGCAAGGAGGAAAAATAGA+AGG | - | chr1_4:14429528-14429547 | Msa0152080:intron | 40.0% | |
| GTTTACATGACGAGACATTG+TGG | - | chr1_4:14429675-14429694 | Msa0152080:intron | 40.0% | |
| ! | TTTGCCGCTTCTATTCAGAT+TGG | - | chr1_4:14427993-14428012 | Msa0152080:three_prime_UTR | 40.0% |
| AGGACCAATCTGAATAGAAG+CGG | + | chr1_4:14428000-14428019 | Msa0152070:intron | 40.0% | |
| ! | CTTTCACCGGATCTTTGAAA+AGG | + | chr1_4:14428020-14428039 | Msa0152070:intron | 40.0% |
| TCAAAGATCCGGTGAAAGTA+AGG | - | chr1_4:14428022-14428041 | Msa0152080:three_prime_UTR | 40.0% | |
| AACATCCCTTGCTTCAGAAT+TGG | + | chr1_4:14428252-14428271 | Msa0152070:intron | 40.0% | |
| ! | CAAAGTATCAGTGAGAAGTG+TGG | - | chr1_4:14428308-14428327 | Msa0152080:intron | 40.0% |
| AACATACTTACAGAACGACG+TGG | + | chr1_4:14428338-14428357 | Msa0152070:intron | 40.0% | |
| ! | CATGCCTTTTTACAGTCTGA+TGG | - | chr1_4:14428614-14428633 | Msa0152080:intron | 40.0% |
| GAAAAGATAAGGCCAACACA+AGG | - | chr1_4:14428642-14428661 | Msa0152080:intron | 40.0% | |
| AGATAGTGAAACTGGTGTCT+AGG | - | chr1_4:14429214-14429233 | Msa0152080:intron | 40.0% | |
| GATAGTGAAACTGGTGTCTA+GGG | - | chr1_4:14429215-14429234 | Msa0152080:intron | 40.0% | |
| ! | CTTGTTCACTTGCGGATTTT+CGG | + | chr1_4:14429420-14429439 | Msa0152070:intron | 40.0% |
| ATCCTTCTCTTGTTCACTTG+CGG | + | chr1_4:14429428-14429447 | Msa0152070:intron | 40.0% | |
| TGGCAAGGAGGAAAAATAGA+AGG | - | chr1_4:14429528-14429547 | Msa0152080:intron | 40.0% | |
| GTTTACATGACGAGACATTG+TGG | - | chr1_4:14429675-14429694 | Msa0152080:intron | 40.0% | |
| AAGATCCGGTGAAAGTAAGG+CGG | - | chr1_4:14428025-14428044 | Msa0152080:three_prime_UTR | 45.0% | |
| TCAGTTGATCGAAGATCGTG+TGG | - | chr1_4:14428196-14428215 | Msa0152080:CDS | 45.0% | |
| TGGTACATGAACCCTTGTGT+TGG | + | chr1_4:14428657-14428676 | Msa0152070:intron | 45.0% | |
| AATGACCAAGGCTGAAGTCA+CGG | - | chr1_4:14428700-14428719 | Msa0152080:intron | 45.0% | |
| AGAACGCCAATTAATGCAGC+AGG | - | chr1_4:14428736-14428755 | Msa0152080:intron | 45.0% | |
| ATACCTTATTCCTCACGTCG+TGG | + | chr1_4:14428814-14428833 | Msa0152070:intron | 45.0% | |
| ATCCGCAAGTGAACAAGAGA+AGG | - | chr1_4:14429423-14429442 | Msa0152080:CDS | 45.0% | |
| GCAAGTGAACAAGAGAAGGA+TGG | - | chr1_4:14429427-14429446 | Msa0152080:CDS | 45.0% | |
| TTGGGCCATAGTGAGGTTAT+TGG | - | chr1_4:14429508-14429527 | Msa0152080:intron | 45.0% | |
| CCTTGCCAATAACCTCACTA+TGG | + | chr1_4:14429516-14429535 | Msa0152070:intron | 45.0% | |
| CCATAGTGAGGTTATTGGCA+AGG | - | chr1_4:14429513-14429532 | Msa0152080:intron | 45.0% | |
| TAGTGAGGTTATTGGCAAGG+AGG | - | chr1_4:14429516-14429535 | Msa0152080:intron | 45.0% | |
| AAGATCCGGTGAAAGTAAGG+CGG | - | chr1_4:14428025-14428044 | Msa0152080:three_prime_UTR | 45.0% | |
| TCAGTTGATCGAAGATCGTG+TGG | - | chr1_4:14428196-14428215 | Msa0152080:CDS | 45.0% | |
| TGGTACATGAACCCTTGTGT+TGG | + | chr1_4:14428657-14428676 | Msa0152070:intron | 45.0% | |
| AATGACCAAGGCTGAAGTCA+CGG | - | chr1_4:14428700-14428719 | Msa0152080:intron | 45.0% | |
| AGAACGCCAATTAATGCAGC+AGG | - | chr1_4:14428736-14428755 | Msa0152080:intron | 45.0% | |
| ATACCTTATTCCTCACGTCG+TGG | + | chr1_4:14428814-14428833 | Msa0152070:intron | 45.0% | |
| ATCCGCAAGTGAACAAGAGA+AGG | - | chr1_4:14429423-14429442 | Msa0152080:CDS | 45.0% | |
| GCAAGTGAACAAGAGAAGGA+TGG | - | chr1_4:14429427-14429446 | Msa0152080:CDS | 45.0% | |
| TTGGGCCATAGTGAGGTTAT+TGG | - | chr1_4:14429508-14429527 | Msa0152080:intron | 45.0% | |
| CCTTGCCAATAACCTCACTA+TGG | + | chr1_4:14429516-14429535 | Msa0152070:intron | 45.0% | |
| CCATAGTGAGGTTATTGGCA+AGG | - | chr1_4:14429513-14429532 | Msa0152080:intron | 45.0% | |
| TAGTGAGGTTATTGGCAAGG+AGG | - | chr1_4:14429516-14429535 | Msa0152080:intron | 45.0% | |
| AGATCCGGTGAAAGTAAGGC+GGG | - | chr1_4:14428026-14428045 | Msa0152080:three_prime_UTR | 50.0% | |
| AACTCCCGCCTTACTTTCAC+CGG | + | chr1_4:14428033-14428052 | Msa0152070:intron | 50.0% | |
| CCATAGACGTTCTCACTCAC+TGG | + | chr1_4:14428677-14428696 | Msa0152070:intron | 50.0% | |
| CCAGTGAGTGAGAACGTCTA+TGG | - | chr1_4:14428674-14428693 | Msa0152080:intron | 50.0% | |
| GTGAGTGAGAACGTCTATGG+TGG | - | chr1_4:14428677-14428696 | Msa0152080:intron | 50.0% | |
| ! | CGTCTATGGTGGAATGACCA+AGG | - | chr1_4:14428688-14428707 | Msa0152080:intron | 50.0% |
| ! | TGATGCTTTGGGCCATAGTG+AGG | - | chr1_4:14429501-14429520 | Msa0152080:intron | 50.0% |
| AGATCCGGTGAAAGTAAGGC+GGG | - | chr1_4:14428026-14428045 | Msa0152080:three_prime_UTR | 50.0% | |
| AACTCCCGCCTTACTTTCAC+CGG | + | chr1_4:14428033-14428052 | Msa0152070:intron | 50.0% | |
| CCATAGACGTTCTCACTCAC+TGG | + | chr1_4:14428677-14428696 | Msa0152070:intron | 50.0% | |
| CCAGTGAGTGAGAACGTCTA+TGG | - | chr1_4:14428674-14428693 | Msa0152080:intron | 50.0% | |
| GTGAGTGAGAACGTCTATGG+TGG | - | chr1_4:14428677-14428696 | Msa0152080:intron | 50.0% | |
| ! | CGTCTATGGTGGAATGACCA+AGG | - | chr1_4:14428688-14428707 | Msa0152080:intron | 50.0% |
| ! | TGATGCTTTGGGCCATAGTG+AGG | - | chr1_4:14429501-14429520 | Msa0152080:intron | 50.0% |
| AGCTTCCGTGACTTCAGCCT+TGG | + | chr1_4:14428708-14428727 | Msa0152070:intron | 55.0% | |
| AGTCTTACGTCCACGACGTG+AGG | - | chr1_4:14428801-14428820 | Msa0152080:intron | 55.0% | |
| CGTCCACGACGTGAGGAATA+AGG | - | chr1_4:14428808-14428827 | Msa0152080:intron | 55.0% | |
| TCCAAGAGCCTGCTAGAGAC+TGG | - | chr1_4:14429454-14429473 | Msa0152080:CDS | 55.0% | |
| CCAAGAGCCTGCTAGAGACT+GGG | - | chr1_4:14429455-14429474 | Msa0152080:CDS | 55.0% | |
| CAAGAGCCTGCTAGAGACTG+GGG | - | chr1_4:14429456-14429475 | Msa0152080:CDS | 55.0% | |
| AGCTTCCGTGACTTCAGCCT+TGG | + | chr1_4:14428708-14428727 | Msa0152070:intron | 55.0% | |
| AGTCTTACGTCCACGACGTG+AGG | - | chr1_4:14428801-14428820 | Msa0152080:intron | 55.0% | |
| CGTCCACGACGTGAGGAATA+AGG | - | chr1_4:14428808-14428827 | Msa0152080:intron | 55.0% | |
| TCCAAGAGCCTGCTAGAGAC+TGG | - | chr1_4:14429454-14429473 | Msa0152080:CDS | 55.0% | |
| CCAAGAGCCTGCTAGAGACT+GGG | - | chr1_4:14429455-14429474 | Msa0152080:CDS | 55.0% | |
| CAAGAGCCTGCTAGAGACTG+GGG | - | chr1_4:14429456-14429475 | Msa0152080:CDS | 55.0% | |
| CCCAGTCTCTAGCAGGCTCT+TGG | + | chr1_4:14429458-14429477 | Msa0152070:intron | 60.0% | |
| GCCTGCTAGAGACTGGGGAA+TGG | - | chr1_4:14429461-14429480 | Msa0152080:intron | 60.0% | |
| GCCATTCCCCAGTCTCTAGC+AGG | + | chr1_4:14429465-14429484 | Msa0152070:intron | 60.0% | |
| CCCAGTCTCTAGCAGGCTCT+TGG | + | chr1_4:14429458-14429477 | Msa0152070:intron | 60.0% | |
| GCCTGCTAGAGACTGGGGAA+TGG | - | chr1_4:14429461-14429480 | Msa0152080:intron | 60.0% | |
| GCCATTCCCCAGTCTCTAGC+AGG | + | chr1_4:14429465-14429484 | Msa0152070:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14427902 | 14429773 | 14427902 | ID=Msa0152080;Name=Msa0152080 |
| chr1_4 | mRNA | 14427902 | 14429773 | 14427902 | ID=Msa0152080-mRNA-1;Parent=Msa0152080;Name=Msa0152080-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.25|0.6|0.8|1|1|5|227|202 |
| chr1_4 | exon | 14427902 | 14428272 | 14427902 | ID=Msa0152080-mRNA-1:exon:5742;Parent=Msa0152080-mRNA-1 |
| chr1_4 | exon | 14428846 | 14429046 | 14428846 | ID=Msa0152080-mRNA-1:exon:5741;Parent=Msa0152080-mRNA-1 |
| chr1_4 | exon | 14429329 | 14429475 | 14429329 | ID=Msa0152080-mRNA-1:exon:5740;Parent=Msa0152080-mRNA-1 |
| chr1_4 | exon | 14429569 | 14429664 | 14429569 | ID=Msa0152080-mRNA-1:exon:5739;Parent=Msa0152080-mRNA-1 |
| chr1_4 | exon | 14429753 | 14429773 | 14429753 | ID=Msa0152080-mRNA-1:exon:5738;Parent=Msa0152080-mRNA-1 |
| chr1_4 | CDS | 14429753 | 14429773 | 14429753 | ID=Msa0152080-mRNA-1:cds;Parent=Msa0152080-mRNA-1 |
| chr1_4 | CDS | 14429569 | 14429664 | 14429569 | ID=Msa0152080-mRNA-1:cds;Parent=Msa0152080-mRNA-1 |
| chr1_4 | CDS | 14429329 | 14429475 | 14429329 | ID=Msa0152080-mRNA-1:cds;Parent=Msa0152080-mRNA-1 |
| chr1_4 | CDS | 14428846 | 14429046 | 14428846 | ID=Msa0152080-mRNA-1:cds;Parent=Msa0152080-mRNA-1 |
| chr1_4 | CDS | 14428129 | 14428272 | 14428129 | ID=Msa0152080-mRNA-1:cds;Parent=Msa0152080-mRNA-1 |
| chr1_4 | three_prime_UTR | 14427902 | 14428128 | 14427902 | ID=Msa0152080-mRNA-1:three_prime_utr;Parent=Msa0152080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
