AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0697390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0697390 MtrunA17_Chr3g0104071 75.701 107 24 1 82 186 82 188 3.71e-52 170
Msa0697390 MtrunA17_Chr5g0429521 74.194 93 23 1 94 186 82 173 5.13e-43 146
Msa0697390 MtrunA17_Chr7g0241761 61.224 98 33 2 92 186 86 181 4.58e-34 123
Msa0697390 MtrunA17_Chr5g0436501 49.107 112 51 2 75 186 61 166 4.76e-28 106
Msa0697390 MtrunA17_Chr1g0162081 64.407 59 21 0 128 186 105 163 1.88e-23 94.7
Msa0697390 MtrunA17_Chr4g0059701 69.091 55 17 0 132 186 71 125 6.03e-23 93.2
Msa0697390 MtrunA17_Chr5g0415191 76.364 55 11 1 132 186 91 143 2.11e-22 92.4
Msa0697390 MtrunA17_Chr4g0062741 73.469 49 13 0 138 186 131 179 3.96e-22 91.3
Msa0697390 MtrunA17_Chr8g0389241 70.000 50 15 0 137 186 97 146 1.15e-20 87.0
Msa0697390 MtrunA17_Chr1g0210471 69.388 49 15 0 138 186 117 165 2.88e-20 85.5
Msa0697390 MtrunA17_Chr6g0488471 70.833 48 14 0 139 186 91 138 7.32e-20 85.1
Msa0697390 MtrunA17_Chr2g0331031 72.340 47 13 0 140 186 104 150 7.78e-20 85.9
Msa0697390 MtrunA17_Chr4g0055931 59.091 66 25 1 121 186 73 136 1.30e-19 84.7
Msa0697390 MtrunA17_Chr3g0135671 62.222 45 17 0 142 186 88 132 7.38e-15 70.5
Msa0697390 MtrunA17_Chr5g0440731 37.778 90 55 1 98 186 57 146 1.22e-14 70.9
Msa0697390 MtrunA17_Chr6g0452791 64.286 42 15 0 145 186 80 121 1.75e-14 68.6
Msa0697390 MtrunA17_Chr3g0092621 61.905 42 16 0 145 186 84 125 1.05e-13 66.2
Msa0697390 MtrunA17_Chr5g0409831 50.847 59 20 1 128 186 69 118 4.63e-13 65.5
Msa0697390 MtrunA17_Chr5g0409841 38.947 95 52 3 98 186 39 133 9.18e-13 64.7
Msa0697390 MtrunA17_Chr5g0440741 60.000 40 16 0 147 186 102 141 1.06e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0697390 AT5G58900.1 61.224 98 33 3 93 186 86 182 4.39e-33 120
Msa0697390 AT2G38090.1 51.887 106 33 3 94 186 82 182 1.36e-28 108
Msa0697390 AT3G11280.2 48.246 114 45 3 75 186 67 168 1.53e-26 102
Msa0697390 AT3G11280.1 48.246 114 45 3 75 186 67 168 1.53e-26 102
Msa0697390 AT5G05790.2 49.462 93 43 1 94 186 84 172 1.24e-23 95.1
Msa0697390 AT5G05790.1 49.462 93 43 1 94 186 84 172 1.24e-23 95.1
Msa0697390 AT5G08520.1 49.438 89 35 2 108 186 71 159 2.01e-22 92.4
Msa0697390 AT5G01200.1 49.057 106 39 4 94 186 84 187 3.22e-22 91.3
Msa0697390 AT1G49010.1 73.469 49 13 0 138 186 127 175 7.42e-22 91.3
Msa0697390 AT5G04760.1 75.510 49 12 0 138 186 92 140 1.19e-21 88.6
Msa0697390 AT1G74840.2 78.723 47 10 0 140 186 91 137 1.49e-20 86.3
Msa0697390 AT1G74840.1 78.723 47 10 0 140 186 91 137 1.96e-20 86.7
Msa0697390 AT1G70000.1 69.091 55 15 1 132 186 87 139 2.70e-20 86.3
Msa0697390 AT1G70000.2 69.091 55 15 1 132 186 87 139 2.70e-20 86.3
Msa0697390 AT3G16350.1 57.576 66 28 0 121 186 113 178 4.36e-20 87.0
Msa0697390 AT5G47390.1 64.815 54 19 0 133 186 84 137 7.13e-20 86.3
Msa0697390 AT5G56840.1 51.389 72 29 2 131 202 79 144 1.60e-18 80.9
Msa0697390 AT1G19000.2 71.739 46 13 0 141 186 98 143 1.61e-18 81.6
Msa0697390 AT1G19000.1 71.739 46 13 0 141 186 98 143 1.61e-18 81.6
Msa0697390 AT5G61620.1 47.222 72 34 1 115 186 82 149 2.27e-16 76.3
Msa0697390 AT5G23650.1 62.500 48 18 0 139 186 114 161 1.29e-14 71.6
Msa0697390 AT3G10580.2 58.696 46 19 0 141 186 91 136 6.56e-14 68.6
Msa0697390 AT3G10580.1 58.696 46 19 0 141 186 91 136 7.99e-14 68.9
Msa0697390 AT4G09450.1 52.727 55 26 0 132 186 78 132 6.97e-13 65.1

Find 138 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTGATTTGGCAATTTC+TGG 0.065325 4_4:-67388692 Msa0697390:CDS
TCTTGCATTCTGTTATATTT+TGG 0.133364 4_4:-67385372 Msa0697390:three_prime_UTR
AGAAGAATTCACCAAATTTA+AGG 0.151774 4_4:+67387119 None:intergenic
CATTTACAGGTTATTTCTAT+TGG 0.190801 4_4:-67386714 Msa0697390:intron
TTTACCCTTTACCTTAAATT+TGG 0.205212 4_4:-67387130 Msa0697390:CDS
CCATAAGTCTAATTTCTTAA+AGG 0.208233 4_4:+67386201 None:intergenic
CTGTTTGTCTGTTGAATTGC+TGG 0.217535 4_4:-67385172 Msa0697390:three_prime_UTR
AGAAGACAACTTTACTATTA+TGG 0.222133 4_4:-67386491 Msa0697390:three_prime_UTR
ACTTCTTCCACTTACATTCT+TGG 0.230378 4_4:-67385854 Msa0697390:three_prime_UTR
TCTATCAGTGAGAAGGAAAT+AGG 0.244683 4_4:-67386168 Msa0697390:three_prime_UTR
GACTATATTACTTATGATAT+TGG 0.249139 4_4:-67385698 Msa0697390:three_prime_UTR
CTTTCTTTATGTGAGCAATT+TGG 0.253206 4_4:-67384776 Msa0697390:three_prime_UTR
AGGTCAATCCTTATCTTCTT+TGG 0.263525 4_4:+67385083 None:intergenic
AGGGAACTGTTCTGCTGATT+TGG 0.264574 4_4:-67388702 Msa0697390:CDS
CATTGGTAATAGATAATAAA+TGG 0.280012 4_4:+67386434 None:intergenic
GTTACCTAAAACTAAGTTAA+AGG 0.280475 4_4:+67386027 None:intergenic
TCACATACTTCTAATATAAA+AGG 0.284969 4_4:+67386234 None:intergenic
AAATGCCTATGAATAAAATT+TGG 0.295175 4_4:-67387351 Msa0697390:CDS
TTTCCTTCTCACTGATAGAT+AGG 0.306885 4_4:+67386172 None:intergenic
GACATTGTTCACTAACTATT+AGG 0.311926 4_4:+67384493 None:intergenic
GTGTTGTCCTTATGCTTAAA+AGG 0.318412 4_4:-67386554 Msa0697390:three_prime_UTR
TTCACCAAATTTAAGGTAAA+GGG 0.322539 4_4:+67387126 None:intergenic
AGTAAAGTTGTCTTCTATAA+AGG 0.334990 4_4:+67386498 None:intergenic
TGTAAGTGGAAGAAGTTAGA+AGG 0.335418 4_4:+67385861 None:intergenic
ATTTACAGGTTATTTCTATT+GGG 0.335592 4_4:-67386713 Msa0697390:intron
CAAAGGGATGCTTAGCAGTT+AGG 0.338816 4_4:+67384892 None:intergenic
CCTTTAAGAAATTAGACTTA+TGG 0.350563 4_4:-67386201 Msa0697390:three_prime_UTR
TTATATGGAATTACATGGTC+AGG 0.354679 4_4:-67385309 Msa0697390:three_prime_UTR
ACTGCAAAGAGAGGCTCTTC+TGG 0.358491 4_4:-67387072 Msa0697390:CDS
AACTCAAAATCTCCAGTCTT+AGG 0.358494 4_4:-67386387 Msa0697390:three_prime_UTR
CGAATCAGTAGGGCATATTC+TGG 0.361470 4_4:+67385025 None:intergenic
AAAGTTATGATAGTCCTTGA+TGG 0.367359 4_4:+67384949 None:intergenic
ACAAACACCGCTTAAATATA+CGG 0.369832 4_4:+67388038 None:intergenic
TGTACCAAAACATGCATATC+TGG 0.382157 4_4:+67385410 None:intergenic
GCCGGTTTAATTCTAACTTC+TGG 0.383349 4_4:-67387168 Msa0697390:CDS
ATGAAGAACATTGTTGTTGC+GGG 0.388908 4_4:-67385595 Msa0697390:three_prime_UTR
CCTCTCTTCCTTTCCTGATC+AGG 0.390701 4_4:+67387042 None:intergenic
TGCAGTAATTATGATGGGTT+TGG 0.390905 4_4:-67385441 Msa0697390:three_prime_UTR
CTGCTGATTTGGCAATTTCT+GGG 0.391005 4_4:-67388691 Msa0697390:intron
CTTTGGGAATTTATAGGCTC+AGG 0.391484 4_4:-67385760 Msa0697390:three_prime_UTR
ATTCACCAAATTTAAGGTAA+AGG 0.399264 4_4:+67387125 None:intergenic
TTGTGCCTTCAGGCTTGTAT+TGG 0.401702 4_4:+67385548 None:intergenic
GCCCTACTGATTCGCTCAAC+TGG 0.407427 4_4:-67385016 Msa0697390:three_prime_UTR
ACCAGAAGTTAGAATTAAAC+CGG 0.417297 4_4:+67387167 None:intergenic
ACTATTTGGGGTATCTTAGC+GGG 0.417455 4_4:-67385510 Msa0697390:three_prime_UTR
GTGAATTCTTCTGTTTATGA+TGG 0.418373 4_4:-67387108 Msa0697390:CDS
GTGACCAGATATGCATGTTT+TGG 0.421812 4_4:-67385414 Msa0697390:three_prime_UTR
GGAATTACATGGTCAGGGCT+TGG 0.425357 4_4:-67385303 Msa0697390:three_prime_UTR
AATATACATGATAGCATAGT+AGG 0.426250 4_4:+67386458 None:intergenic
CAACTCTCTAAATCCATGAT+AGG 0.430467 4_4:+67385107 None:intergenic
ATATTTCATCTTACCGAAGA+TGG 0.434161 4_4:+67384415 None:intergenic
CTATCAGTGAGAAGGAAATA+GGG 0.440147 4_4:-67386167 Msa0697390:three_prime_UTR
TACTATTTGGGGTATCTTAG+CGG 0.440195 4_4:-67385511 Msa0697390:three_prime_UTR
AGAGTTGTCCAAAGAAGATA+AGG 0.446445 4_4:-67385091 Msa0697390:three_prime_UTR
ATCTCAGATTGCTCCATCTT+CGG 0.448460 4_4:-67384428 Msa0697390:three_prime_UTR
ATATAAATGGAGCTATTTCA+AGG 0.452414 4_4:-67388722 None:intergenic
GTTGTCTTCTATAAAGGAAA+AGG 0.458075 4_4:+67386504 None:intergenic
ATTGGCACGAGCTCATGATT+AGG 0.460377 4_4:-67385680 Msa0697390:three_prime_UTR
ACTTAGTAAATGCAATTTCA+CGG 0.460602 4_4:-67385217 Msa0697390:three_prime_UTR
AGCGAAATGCAGAGAACAAA+AGG 0.464730 4_4:+67387997 None:intergenic
AAAAGGAGTAAATGTCTTGA+AGG 0.467418 4_4:-67385270 Msa0697390:three_prime_UTR
GCTGGCTGTATGTATTTCAA+TGG 0.469509 4_4:-67385154 Msa0697390:three_prime_UTR
AGTAAATGTCTTGAAGGTTA+AGG 0.470865 4_4:-67385264 Msa0697390:three_prime_UTR
TTTCTTGCAGTAATTATGAT+GGG 0.473271 4_4:-67385446 Msa0697390:three_prime_UTR
TTCTGGTAGATCTCCTGATC+AGG 0.477520 4_4:-67387055 Msa0697390:CDS
TCATCTTACTACAATATCAT+TGG 0.478148 4_4:+67386417 None:intergenic
TATTTCTATTGGGTCTGAAA+AGG 0.478616 4_4:-67386703 Msa0697390:CDS
AAAGGTATGGAAAAGGTGAT+TGG 0.479933 4_4:-67386685 Msa0697390:CDS
GATTCAACCAAGAATGTAAG+TGG 0.487566 4_4:+67385847 None:intergenic
AAGAATAAAGTAATGGCAAA+GGG 0.487601 4_4:+67384876 None:intergenic
GAAAGCGTTGCAAGACAGAT+AGG 0.491188 4_4:+67385481 None:intergenic
TATGAAAGGATAAAAGATGT+TGG 0.495579 4_4:-67384602 Msa0697390:three_prime_UTR
CAAAATGTGTTGGAGGCTCA+TGG 0.496406 4_4:-67385720 Msa0697390:three_prime_UTR
AAAATTGAATTTGAAGGCGG+TGG 0.497636 4_4:-67386588 Msa0697390:CDS
CTATTGGGTCTGAAAAGGTA+TGG 0.500766 4_4:-67386698 Msa0697390:CDS
TTCCTTCTCACTGATAGATA+GGG 0.500984 4_4:+67386173 None:intergenic
GCATAAGGACAACACTTACA+TGG 0.502150 4_4:+67386562 None:intergenic
TCATGGCTAGACACTTGTGT+TGG 0.505901 4_4:+67386626 None:intergenic
TGTTCTTCATATTCAATGAC+CGG 0.506977 4_4:+67385608 None:intergenic
CTTTATGTGAGCAATTTGGT+TGG 0.509483 4_4:-67384772 Msa0697390:three_prime_UTR
AAAAGTTGGTTTACTATTTG+GGG 0.510466 4_4:-67385522 Msa0697390:three_prime_UTR
GAGATGAAAGTGCAATATGA+TGG 0.512012 4_4:-67384676 Msa0697390:three_prime_UTR
ATTTCTCCATTCTGATCACC+AGG 0.516162 4_4:+67387814 None:intergenic
TTTCTAAAAGATATAGTCAA+AGG 0.517643 4_4:+67385645 None:intergenic
ACAACTTTACTATTATGGTA+TGG 0.520830 4_4:-67386486 Msa0697390:three_prime_UTR
GTGATTGGAGAAACATTTCA+AGG 0.523020 4_4:-67386670 Msa0697390:CDS
TATGTGAAAGTAGCCTATCA+TGG 0.526059 4_4:-67385120 Msa0697390:three_prime_UTR
TCAAAATCTCCAGTCTTAGG+AGG 0.527252 4_4:-67386384 Msa0697390:three_prime_UTR
AAATTGCATTTACTAAGTGA+TGG 0.529246 4_4:+67385222 None:intergenic
TTCTAAAAGATATAGTCAAA+GGG 0.534640 4_4:+67385646 None:intergenic
TATATGGAATTACATGGTCA+GGG 0.546629 4_4:-67385308 Msa0697390:three_prime_UTR
AAAGAATAAAGTAATGGCAA+AGG 0.548815 4_4:+67384875 None:intergenic
TAGTAAATGCAAAAGAGATA+AGG 0.549691 4_4:+67385342 None:intergenic
GTAAGTGGAAGAAGTTAGAA+GGG 0.552516 4_4:+67385862 None:intergenic
TATAAATGGAGCTATTTCAA+GGG 0.553386 4_4:-67388721 None:intergenic
AGAGGAATTACTGCAAAGAG+AGG 0.554018 4_4:-67387081 Msa0697390:CDS
TATTGTTGTTGTAGTGAACC+TGG 0.555429 4_4:-67387832 Msa0697390:CDS
TTCGATTTGAGCTTTATGAA+AGG 0.556295 4_4:-67384616 Msa0697390:three_prime_UTR
GGTCTGAAAAGGTATGGAAA+AGG 0.561303 4_4:-67386692 Msa0697390:CDS
ATACAGTCATATCACGGAGA+TGG 0.566257 4_4:+67384566 None:intergenic
ATGTGGGATATGATGAAAGC+AGG 0.568912 4_4:-67384652 Msa0697390:three_prime_UTR
TGTTGTTGCGGGATTTGACA+TGG 0.569183 4_4:-67385584 Msa0697390:three_prime_UTR
CTTCTCACTGATAGATAGGG+TGG 0.570585 4_4:+67386176 None:intergenic
AAGTGCAATATGATGGGATG+TGG 0.571713 4_4:-67384669 Msa0697390:three_prime_UTR
AACAGAATGCAAGAGGGAGT+TGG 0.573733 4_4:+67385381 None:intergenic
AAAATATAACAGAATGCAAG+AGG 0.576489 4_4:+67385374 None:intergenic
GATAGAAAAGAATAAAGTAA+TGG 0.577757 4_4:+67384869 None:intergenic
ACCAGTTGAGCGAATCAGTA+GGG 0.578694 4_4:+67385015 None:intergenic
TAAAAGATGTTGGAATGTAG+TGG 0.580988 4_4:-67384592 Msa0697390:three_prime_UTR
CACCCTATCTATCAGTGAGA+AGG 0.585213 4_4:-67386175 Msa0697390:three_prime_UTR
AATGCAGAGAACAAAAGGAA+TGG 0.585951 4_4:+67388002 None:intergenic
AGTGCAATATGATGGGATGT+GGG 0.589936 4_4:-67384668 Msa0697390:three_prime_UTR
GAAGAGATTGAAATAATAGA+CGG 0.590661 4_4:-67386064 Msa0697390:three_prime_UTR
AAAGGAAGAGAGGTGTGCCA+TGG 0.593587 4_4:-67387032 Msa0697390:CDS
AGGCTACTTTCACATACTTG+TGG 0.595394 4_4:+67385127 None:intergenic
ACATGTGTAATATGAAATGA+AGG 0.595484 4_4:+67384845 None:intergenic
TATGAAGAACATTGTTGTTG+CGG 0.599936 4_4:-67385596 Msa0697390:three_prime_UTR
GTAGATCTCCTGATCAGGAA+AGG 0.600023 4_4:-67387050 Msa0697390:CDS
ATTTGACATGGACTATACTC+TGG 0.601944 4_4:-67385572 Msa0697390:three_prime_UTR
AGATGAAAGTGCAATATGAT+GGG 0.605901 4_4:-67384675 Msa0697390:three_prime_UTR
AGTGAACCTGGTGATCAGAA+TGG 0.607677 4_4:-67387820 Msa0697390:CDS
ACTATTAGGTACATAGAAGT+CGG 0.607942 4_4:+67384507 None:intergenic
AAAAGATATAGTCAAAGGGA+TGG 0.609408 4_4:+67385650 None:intergenic
CAGTCATATCACGGAGATGG+AGG 0.610698 4_4:+67384569 None:intergenic
CTATTTGGGGTATCTTAGCG+GGG 0.612934 4_4:-67385509 Msa0697390:three_prime_UTR
ATATCCTCAAGTATTTCCAC+AGG 0.614368 4_4:+67385063 None:intergenic
TTGACCTGTGGAAATACTTG+AGG 0.621259 4_4:-67385067 Msa0697390:three_prime_UTR
AATGTAATACAGTCATATCA+CGG 0.626250 4_4:+67384560 None:intergenic
CAAAATCTCCAGTCTTAGGA+GGG 0.633094 4_4:-67386383 Msa0697390:three_prime_UTR
TTGTCCTTATGCTTAAAAGG+TGG 0.636379 4_4:-67386551 Msa0697390:three_prime_UTR
CTGGTCCAATACAAGCCTGA+AGG 0.640349 4_4:-67385553 Msa0697390:three_prime_UTR
CCTGATCAGGAAAGGAAGAG+AGG 0.641681 4_4:-67387042 Msa0697390:CDS
AACCAGTTGAGCGAATCAGT+AGG 0.655358 4_4:+67385014 None:intergenic
AGAAGATAAGGATTGACCTG+TGG 0.666013 4_4:-67385079 Msa0697390:three_prime_UTR
TCTCTCGCCGTATATTTAAG+CGG 0.666816 4_4:-67388045 Msa0697390:CDS
AATAGATGTGAATTCAACGA+TGG 0.667812 4_4:+67387856 None:intergenic
AAATATAACAGAATGCAAGA+GGG 0.685221 4_4:+67385375 None:intergenic
TAGTATCATAGAGTGTGACA+AGG 0.714772 4_4:-67386122 Msa0697390:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTAAATTTTTTAAGAT+AGG + chr4_4:67386614-67386633 None:intergenic 10.0%
!!! AATAAGATTATTTTTACTTT+GGG - chr4_4:67387361-67387380 Msa0697390:CDS 10.0%
!! ATATAAAATGTACATCTAAT+TGG - chr4_4:67384683-67384702 Msa0697390:three_prime_UTR 15.0%
!!! AAATTCAATTTTTTACTTGT+TGG + chr4_4:67386541-67386560 None:intergenic 15.0%
!! AAGTAAAAAATTGAATTTGA+AGG - chr4_4:67386543-67386562 Msa0697390:three_prime_UTR 15.0%
!! CAAAGTAAAAATAATCTTAT+TGG + chr4_4:67387362-67387381 None:intergenic 15.0%
!!! CAATAAGATTATTTTTACTT+TGG - chr4_4:67387360-67387379 Msa0697390:CDS 15.0%
!!! TACTAAGTTGATTTTTTATA+TGG - chr4_4:67387813-67387832 Msa0697390:CDS 15.0%
!!! ATTTTTTATATGGAATTACA+TGG - chr4_4:67387823-67387842 Msa0697390:CDS 15.0%
!!! TTTAAGTTTTTAATAGTGTG+TGG - chr4_4:67384492-67384511 Msa0697390:three_prime_UTR 20.0%
!! CAGGAATTAAATATGTTAAT+AGG + chr4_4:67384562-67384581 None:intergenic 20.0%
!!! ACATATTTAATTCCTGATTT+TGG - chr4_4:67384566-67384585 Msa0697390:three_prime_UTR 20.0%
!! AAAACAGCAGTAAAAAAATT+AGG + chr4_4:67385389-67385408 None:intergenic 20.0%
!! TTGGCATATAAATTTGAATA+AGG + chr4_4:67385636-67385655 None:intergenic 20.0%
!!! TAACAACTAAAACTGATTTT+GGG + chr4_4:67385685-67385704 None:intergenic 20.0%
!! AAATGCCTATGAATAAAATT+TGG - chr4_4:67385786-67385805 Msa0697390:three_prime_UTR 20.0%
!!! AAACACCAAATTTTATTCAT+AGG + chr4_4:67385794-67385813 None:intergenic 20.0%
!! TTAATGTGAAGAATCATATA+AGG - chr4_4:67385917-67385936 Msa0697390:three_prime_UTR 20.0%
!!! TAATTATTTAAGTTGTTGAG+CGG - chr4_4:67386367-67386386 Msa0697390:three_prime_UTR 20.0%
!! TTTGATGAAAATTCATTTAC+AGG - chr4_4:67386410-67386429 Msa0697390:three_prime_UTR 20.0%
!!! ATTTACAGGTTATTTCTATT+GGG - chr4_4:67386424-67386443 Msa0697390:three_prime_UTR 20.0%
!! TAAAAAATTGAATTTGAAGG+CGG - chr4_4:67386546-67386565 Msa0697390:three_prime_UTR 20.0%
!!! CATTGGTAATAGATAATAAA+TGG + chr4_4:67386706-67386725 None:intergenic 20.0%
!! TCACATACTTCTAATATAAA+AGG + chr4_4:67386906-67386925 None:intergenic 20.0%
!!! TTTAACTTAGTTTTAGGTAA+CGG - chr4_4:67387112-67387131 Msa0697390:CDS 20.0%
!!! TTTTTACTTTGGGAATTTAT+AGG - chr4_4:67387371-67387390 Msa0697390:intron 20.0%
!! GACTATATTACTTATGATAT+TGG - chr4_4:67387439-67387458 Msa0697390:intron 20.0%
!!! TTCTAAAAGATATAGTCAAA+GGG + chr4_4:67387494-67387513 None:intergenic 20.0%
!!! TTTCTAAAAGATATAGTCAA+AGG + chr4_4:67387495-67387514 None:intergenic 20.0%
!!! AGAAACATATATTTTGTAAC+CGG - chr4_4:67387510-67387529 Msa0697390:intron 20.0%
!!! TAAAAAGTTGGTTTACTATT+TGG - chr4_4:67387613-67387632 Msa0697390:intron 20.0%
!!! AAAAAGTTGGTTTACTATTT+GGG - chr4_4:67387614-67387633 Msa0697390:intron 20.0%
!! GATAGAAAAGAATAAAGTAA+TGG + chr4_4:67388271-67388290 None:intergenic 20.0%
!!! AATAATGATGGGTTATTAAG+CGG + chr4_4:67384519-67384538 None:intergenic 25.0%
! CTATTCTTAGCAATAATGAT+GGG + chr4_4:67384530-67384549 None:intergenic 25.0%
!! TGTACATCTAATTGGTTTAA+TGG - chr4_4:67384691-67384710 Msa0697390:three_prime_UTR 25.0%
! TAGTTGAATTTGTCAGATAA+TGG - chr4_4:67384928-67384947 Msa0697390:three_prime_UTR 25.0%
! AGTTGAATTTGTCAGATAAT+GGG - chr4_4:67384929-67384948 Msa0697390:three_prime_UTR 25.0%
!! ATTCGCCTTTCATTTTATAT+GGG - chr4_4:67385019-67385038 Msa0697390:three_prime_UTR 25.0%
! CAAAACCCATATAAAATGAA+AGG + chr4_4:67385027-67385046 None:intergenic 25.0%
! CAATTTACCAAGAATTGATA+TGG + chr4_4:67385485-67385504 None:intergenic 25.0%
! ATCACAACGTTATAAGAATT+TGG + chr4_4:67385655-67385674 None:intergenic 25.0%
!!! GTAACAACTAAAACTGATTT+TGG + chr4_4:67385686-67385705 None:intergenic 25.0%
!! TTGTTACACTACTTGATTTT+GGG - chr4_4:67385699-67385718 Msa0697390:three_prime_UTR 25.0%
! TTTACCCTTTACCTTAAATT+TGG - chr4_4:67386007-67386026 Msa0697390:three_prime_UTR 25.0%
!! TTCACCAAATTTAAGGTAAA+GGG + chr4_4:67386014-67386033 None:intergenic 25.0%
!! ATTCACCAAATTTAAGGTAA+AGG + chr4_4:67386015-67386034 None:intergenic 25.0%
! AGAAGAATTCACCAAATTTA+AGG + chr4_4:67386021-67386040 None:intergenic 25.0%
! ATATGTAGTTATTGAGAGTT+AGG - chr4_4:67386256-67386275 Msa0697390:three_prime_UTR 25.0%
!!! TGGTCTTTTACATTTTGATA+TGG - chr4_4:67386297-67386316 Msa0697390:three_prime_UTR 25.0%
!!! CATTTACAGGTTATTTCTAT+TGG - chr4_4:67386423-67386442 Msa0697390:three_prime_UTR 25.0%
! AGTAAAGTTGTCTTCTATAA+AGG + chr4_4:67386642-67386661 None:intergenic 25.0%
! AGAAGACAACTTTACTATTA+TGG - chr4_4:67386646-67386665 Msa0697390:CDS 25.0%
! ACAACTTTACTATTATGGTA+TGG - chr4_4:67386651-67386670 Msa0697390:CDS 25.0%
! AATATACATGATAGCATAGT+AGG + chr4_4:67386682-67386701 None:intergenic 25.0%
! TCATCTTACTACAATATCAT+TGG + chr4_4:67386723-67386742 None:intergenic 25.0%
! CCATAAGTCTAATTTCTTAA+AGG + chr4_4:67386939-67386958 None:intergenic 25.0%
!! CCTTTAAGAAATTAGACTTA+TGG - chr4_4:67386936-67386955 Msa0697390:intron 25.0%
! GAAGAGATTGAAATAATAGA+CGG - chr4_4:67387073-67387092 Msa0697390:CDS 25.0%
!!! TAGTCCTTTAACTTAGTTTT+AGG - chr4_4:67387106-67387125 Msa0697390:CDS 25.0%
! GTTACCTAAAACTAAGTTAA+AGG + chr4_4:67387113-67387132 None:intergenic 25.0%
! ACGATGAAAAAGAACAAATA+CGG + chr4_4:67387172-67387191 None:intergenic 25.0%
!! AAAAGTTGGTTTACTATTTG+GGG - chr4_4:67387615-67387634 Msa0697390:intron 25.0%
!! TTTTCTTGCAGTAATTATGA+TGG - chr4_4:67387690-67387709 Msa0697390:intron 25.0%
! TTTCTTGCAGTAATTATGAT+GGG - chr4_4:67387691-67387710 Msa0697390:intron 25.0%
! AAATATAACAGAATGCAAGA+GGG + chr4_4:67387765-67387784 None:intergenic 25.0%
! AAAATATAACAGAATGCAAG+AGG + chr4_4:67387766-67387785 None:intergenic 25.0%
!! TCTTGCATTCTGTTATATTT+TGG - chr4_4:67387765-67387784 Msa0697390:intron 25.0%
! TAGTAAATGCAAAAGAGATA+AGG + chr4_4:67387798-67387817 None:intergenic 25.0%
! AAATTGCATTTACTAAGTGA+TGG + chr4_4:67387918-67387937 None:intergenic 25.0%
! ACTTAGTAAATGCAATTTCA+CGG - chr4_4:67387920-67387939 Msa0697390:intron 25.0%
! TCAAAAAAGTTGTTCTTTAC+AGG + chr4_4:67388167-67388186 None:intergenic 25.0%
! AAGAATAAAGTAATGGCAAA+GGG + chr4_4:67388264-67388283 None:intergenic 25.0%
! AAAGAATAAAGTAATGGCAA+AGG + chr4_4:67388265-67388284 None:intergenic 25.0%
! ACATGTGTAATATGAAATGA+AGG + chr4_4:67388295-67388314 None:intergenic 25.0%
!!! TTTGTGTGTTTTTGTTAAGT+AGG - chr4_4:67388388-67388407 Msa0697390:intron 25.0%
! TATGAAAGGATAAAAGATGT+TGG - chr4_4:67388535-67388554 Msa0697390:intron 25.0%
! AATGTAATACAGTCATATCA+CGG + chr4_4:67388580-67388599 None:intergenic 25.0%
!!! AACAATGTCTTTTTTCTTCA+GGG - chr4_4:67388658-67388677 Msa0697390:intron 25.0%
!! ATAATGATGGGTTATTAAGC+GGG + chr4_4:67384518-67384537 None:intergenic 30.0%
CCTATTCTTAGCAATAATGA+TGG + chr4_4:67384531-67384550 None:intergenic 30.0%
CCATCATTATTGCTAAGAAT+AGG - chr4_4:67384528-67384547 Msa0697390:three_prime_UTR 30.0%
!! TCTGATTTGGGAATTTATGT+CGG - chr4_4:67384811-67384830 Msa0697390:three_prime_UTR 30.0%
! TTCAAGAAGACTTTGTTGTA+TGG - chr4_4:67384860-67384879 Msa0697390:three_prime_UTR 30.0%
GTTGAATTTGTCAGATAATG+GGG - chr4_4:67384930-67384949 Msa0697390:three_prime_UTR 30.0%
! GATTCGCCTTTCATTTTATA+TGG - chr4_4:67385018-67385037 Msa0697390:three_prime_UTR 30.0%
!!! TTGCAGTTTTGTTTTGTTGT+TGG - chr4_4:67385061-67385080 Msa0697390:three_prime_UTR 30.0%
!!! AGTTTTGTTTTGTTGTTGGT+GGG - chr4_4:67385065-67385084 Msa0697390:three_prime_UTR 30.0%
ACAAACACCGCTTAAATATA+CGG + chr4_4:67385102-67385121 None:intergenic 30.0%
AATAGATGTGAATTCAACGA+TGG + chr4_4:67385284-67385303 None:intergenic 30.0%
AGCAAGAACACAATATTAGA+AGG + chr4_4:67385417-67385436 None:intergenic 30.0%
AAAGAATGAAGAATAGCAAG+AGG + chr4_4:67385451-67385470 None:intergenic 30.0%
ACCATTATCTACGCATTTAA+TGG - chr4_4:67385594-67385613 Msa0697390:three_prime_UTR 30.0%
CCATTATCTACGCATTTAAT+GGG - chr4_4:67385595-67385614 Msa0697390:three_prime_UTR 30.0%
! GTTGTTACACTACTTGATTT+TGG - chr4_4:67385698-67385717 Msa0697390:three_prime_UTR 30.0%
! TGTTACACTACTTGATTTTG+GGG - chr4_4:67385700-67385719 Msa0697390:three_prime_UTR 30.0%
AGTAGGGCTAAAATTAGTAA+TGG - chr4_4:67385735-67385754 Msa0697390:three_prime_UTR 30.0%
GTAGGGCTAAAATTAGTAAT+GGG - chr4_4:67385736-67385755 Msa0697390:three_prime_UTR 30.0%
ATGGGAATAAAATGCATTGT+AGG - chr4_4:67385754-67385773 Msa0697390:three_prime_UTR 30.0%
! TGTTTAGCATCACATGTTTT+TGG - chr4_4:67385809-67385828 Msa0697390:three_prime_UTR 30.0%
! AAAGTATCTGAAATGATACC+TGG - chr4_4:67385883-67385902 Msa0697390:three_prime_UTR 30.0%
GATGTTTGTAATATAGAAGC+CGG - chr4_4:67385951-67385970 Msa0697390:three_prime_UTR 30.0%
ACCAGAAGTTAGAATTAAAC+CGG + chr4_4:67385973-67385992 None:intergenic 30.0%
GTGAATTCTTCTGTTTATGA+TGG - chr4_4:67386029-67386048 Msa0697390:three_prime_UTR 30.0%
!!! TCTGTTTATGATGGTTTTAG+AGG - chr4_4:67386038-67386057 Msa0697390:three_prime_UTR 30.0%
! TTATGTTTTTCTTCAGTCCA+TGG + chr4_4:67386125-67386144 None:intergenic 30.0%
TTCCAAACATGCACTAATAT+CGG + chr4_4:67386206-67386225 None:intergenic 30.0%
! TATTTCTATTGGGTCTGAAA+AGG - chr4_4:67386434-67386453 Msa0697390:three_prime_UTR 30.0%
! CAAGGAATTTTGTGATCATT+AGG - chr4_4:67386485-67386504 Msa0697390:three_prime_UTR 30.0%
GTTGTCTTCTATAAAGGAAA+AGG + chr4_4:67386636-67386655 None:intergenic 30.0%
!! TGACTGAACTTCATTTTAGT+AGG - chr4_4:67386794-67386813 Msa0697390:intron 30.0%
GAAAAAGAACAAATACGGAA+AGG + chr4_4:67387167-67387186 None:intergenic 30.0%
! AAGGGAAACTTAACAGTTTT+AGG + chr4_4:67387260-67387279 None:intergenic 30.0%
AAAAGATATAGTCAAAGGGA+TGG + chr4_4:67387490-67387509 None:intergenic 30.0%
TGTTCTTCATATTCAATGAC+CGG + chr4_4:67387532-67387551 None:intergenic 30.0%
! TATGAAGAACATTGTTGTTG+CGG - chr4_4:67387541-67387560 Msa0697390:intron 30.0%
!! AACTTTTTAATTGTGCCTTC+AGG + chr4_4:67387602-67387621 None:intergenic 30.0%
! TGAAGGCACAATTAAAAAGT+TGG - chr4_4:67387601-67387620 Msa0697390:intron 30.0%
TTATATGGAATTACATGGTC+AGG - chr4_4:67387828-67387847 Msa0697390:CDS 30.0%
TATATGGAATTACATGGTCA+GGG - chr4_4:67387829-67387848 Msa0697390:CDS 30.0%
AAAAGGAGTAAATGTCTTGA+AGG - chr4_4:67387867-67387886 Msa0697390:intron 30.0%
AGTAAATGTCTTGAAGGTTA+AGG - chr4_4:67387873-67387892 Msa0697390:intron 30.0%
!!! ACAACTTTTTTGAACCATCA+AGG - chr4_4:67388174-67388193 Msa0697390:intron 30.0%
AAAGTTATGATAGTCCTTGA+TGG + chr4_4:67388191-67388210 None:intergenic 30.0%
CTTTCTTTATGTGAGCAATT+TGG - chr4_4:67388361-67388380 Msa0697390:intron 30.0%
! AGATGAAAGTGCAATATGAT+GGG - chr4_4:67388462-67388481 Msa0697390:intron 30.0%
! TTCGATTTGAGCTTTATGAA+AGG - chr4_4:67388521-67388540 Msa0697390:intron 30.0%
TAAAAGATGTTGGAATGTAG+TGG - chr4_4:67388545-67388564 Msa0697390:intron 30.0%
ACTATTAGGTACATAGAAGT+CGG + chr4_4:67388633-67388652 None:intergenic 30.0%
GACATTGTTCACTAACTATT+AGG + chr4_4:67388647-67388666 None:intergenic 30.0%
!!! GAACAATGTCTTTTTTCTTC+AGG - chr4_4:67388657-67388676 Msa0697390:intron 30.0%
AATATGGAATGCAGATCACA+TGG + chr4_4:67384602-67384621 None:intergenic 35.0%
TGCACAATCCGTATTAACAT+CGG + chr4_4:67384901-67384920 None:intergenic 35.0%
! ATGTTAATACGGATTGTGCA+TGG - chr4_4:67384901-67384920 Msa0697390:three_prime_UTR 35.0%
! GCCGGTACTTGAAAAATTTT+CGG - chr4_4:67384952-67384971 Msa0697390:three_prime_UTR 35.0%
!!! GCCGAAAATTTTTCAAGTAC+CGG + chr4_4:67384956-67384975 None:intergenic 35.0%
! GGTACTTGAAAAATTTTCGG+CGG - chr4_4:67384955-67384974 Msa0697390:three_prime_UTR 35.0%
TTGGGTGCATAATTTCTTTG+TGG - chr4_4:67384987-67385006 Msa0697390:three_prime_UTR 35.0%
GTGCATAATTTCTTTGTGGT+GGG - chr4_4:67384991-67385010 Msa0697390:three_prime_UTR 35.0%
TGCATAATTTCTTTGTGGTG+GGG - chr4_4:67384992-67385011 Msa0697390:three_prime_UTR 35.0%
!!! CAGTTTTGTTTTGTTGTTGG+TGG - chr4_4:67385064-67385083 Msa0697390:three_prime_UTR 35.0%
AATGCAGAGAACAAAAGGAA+TGG + chr4_4:67385138-67385157 None:intergenic 35.0%
! GTGCTGTTCTTTGATCATAA+TGG - chr4_4:67385171-67385190 Msa0697390:three_prime_UTR 35.0%
! TATTGTTGTTGTAGTGAACC+TGG - chr4_4:67385305-67385324 Msa0697390:three_prime_UTR 35.0%
ACCAAGAATTGATATGGTTG+AGG + chr4_4:67385479-67385498 None:intergenic 35.0%
CCCATTAAATGCGTAGATAA+TGG + chr4_4:67385598-67385617 None:intergenic 35.0%
AACATGTATTGCTCATATCG+TGG - chr4_4:67385857-67385876 Msa0697390:three_prime_UTR 35.0%
ACATTAACAACACTCTTTCC+AGG + chr4_4:67385904-67385923 None:intergenic 35.0%
AACCGATATTAGTGCATGTT+TGG - chr4_4:67386201-67386220 Msa0697390:three_prime_UTR 35.0%
! TTAGTGCATGTTTGGAATCT+AGG - chr4_4:67386209-67386228 Msa0697390:three_prime_UTR 35.0%
GAGAGTTAGGTATTTCCTAA+TGG - chr4_4:67386269-67386288 Msa0697390:three_prime_UTR 35.0%
TAAAAGACCACAACACCATT+AGG + chr4_4:67386287-67386306 None:intergenic 35.0%
! AAAGGTATGGAAAAGGTGAT+TGG - chr4_4:67386452-67386471 Msa0697390:three_prime_UTR 35.0%
GTGATTGGAGAAACATTTCA+AGG - chr4_4:67386467-67386486 Msa0697390:three_prime_UTR 35.0%
!! TTTTACTTGTTGGAGCTTCA+TGG + chr4_4:67386531-67386550 None:intergenic 35.0%
AAAATTGAATTTGAAGGCGG+TGG - chr4_4:67386549-67386568 Msa0697390:three_prime_UTR 35.0%
GTGTTGTCCTTATGCTTAAA+AGG - chr4_4:67386583-67386602 Msa0697390:CDS 35.0%
TTGTCCTTATGCTTAAAAGG+TGG - chr4_4:67386586-67386605 Msa0697390:CDS 35.0%
AACTCAAAATCTCCAGTCTT+AGG - chr4_4:67386750-67386769 Msa0697390:intron 35.0%
TTCCTTCTCACTGATAGATA+GGG + chr4_4:67386967-67386986 None:intergenic 35.0%
TTTCCTTCTCACTGATAGAT+AGG + chr4_4:67386968-67386987 None:intergenic 35.0%
TCTATCAGTGAGAAGGAAAT+AGG - chr4_4:67386969-67386988 Msa0697390:intron 35.0%
CTATCAGTGAGAAGGAAATA+GGG - chr4_4:67386970-67386989 Msa0697390:intron 35.0%
TAGTATCATAGAGTGTGACA+AGG - chr4_4:67387015-67387034 Msa0697390:CDS 35.0%
GTAAGTGGAAGAAGTTAGAA+GGG + chr4_4:67387278-67387297 None:intergenic 35.0%
TGTAAGTGGAAGAAGTTAGA+AGG + chr4_4:67387279-67387298 None:intergenic 35.0%
ACTTCTTCCACTTACATTCT+TGG - chr4_4:67387283-67387302 Msa0697390:intron 35.0%
GATTCAACCAAGAATGTAAG+TGG + chr4_4:67387293-67387312 None:intergenic 35.0%
! TCCAACACATTTTGCCTAAA+AGG + chr4_4:67387411-67387430 None:intergenic 35.0%
! TTTTAGGCAAAATGTGTTGG+AGG - chr4_4:67387410-67387429 Msa0697390:intron 35.0%
! ATGAAGAACATTGTTGTTGC+GGG - chr4_4:67387542-67387561 Msa0697390:intron 35.0%
! ATTTGACATGGACTATACTC+TGG - chr4_4:67387565-67387584 Msa0697390:intron 35.0%
! TACTATTTGGGGTATCTTAG+CGG - chr4_4:67387626-67387645 Msa0697390:intron 35.0%
!! TGCAGTAATTATGATGGGTT+TGG - chr4_4:67387696-67387715 Msa0697390:intron 35.0%
TGTACCAAAACATGCATATC+TGG + chr4_4:67387730-67387749 None:intergenic 35.0%
!! GGCTTGGTTTTTGACAAAAA+AGG - chr4_4:67387850-67387869 Msa0697390:CDS 35.0%
TATGTGAAAGTAGCCTATCA+TGG - chr4_4:67388017-67388036 Msa0697390:CDS 35.0%
CAACTCTCTAAATCCATGAT+AGG + chr4_4:67388033-67388052 None:intergenic 35.0%
AGAGTTGTCCAAAGAAGATA+AGG - chr4_4:67388046-67388065 Msa0697390:CDS 35.0%
AGGTCAATCCTTATCTTCTT+TGG + chr4_4:67388057-67388076 None:intergenic 35.0%
ATATCCTCAAGTATTTCCAC+AGG + chr4_4:67388077-67388096 None:intergenic 35.0%
CTTTATGTGAGCAATTTGGT+TGG - chr4_4:67388365-67388384 Msa0697390:intron 35.0%
! GAGATGAAAGTGCAATATGA+TGG - chr4_4:67388461-67388480 Msa0697390:intron 35.0%
!!! TGTCTTTTTTCTTCAGGGTT+AGG - chr4_4:67388663-67388682 Msa0697390:intron 35.0%
!! TCTGCTGATTTGGCAATTTC+TGG - chr4_4:67384445-67384464 Msa0697390:three_prime_UTR 40.0%
!! CTGCTGATTTGGCAATTTCT+GGG - chr4_4:67384446-67384465 Msa0697390:three_prime_UTR 40.0%
GGTCTTAAAGAGCCAAAATC+AGG + chr4_4:67384581-67384600 None:intergenic 40.0%
! TATTGGGGAGCGTGTTAATA+TGG + chr4_4:67384618-67384637 None:intergenic 40.0%
! AGCAGAAAATGCAGGTATTG+GGG + chr4_4:67384633-67384652 None:intergenic 40.0%
CAGCAGAAAATGCAGGTATT+GGG + chr4_4:67384634-67384653 None:intergenic 40.0%
ACAGCAGAAAATGCAGGTAT+TGG + chr4_4:67384635-67384654 None:intergenic 40.0%
! TACCTGCATTTTCTGCTGTT+AGG - chr4_4:67384636-67384655 Msa0697390:three_prime_UTR 40.0%
TTCCTAACAGCAGAAAATGC+AGG + chr4_4:67384641-67384660 None:intergenic 40.0%
TTTCTGCTGTTAGGAAGTGA+TGG - chr4_4:67384645-67384664 Msa0697390:three_prime_UTR 40.0%
CTCCATGGATGTTCTGATTT+GGG - chr4_4:67384799-67384818 Msa0697390:three_prime_UTR 40.0%
TTCCCAAATCAGAACATCCA+TGG + chr4_4:67384804-67384823 None:intergenic 40.0%
GCACAATCCGTATTAACATC+GGG + chr4_4:67384900-67384919 None:intergenic 40.0%
!! AATTTGTCAGATAATGGGGC+CGG - chr4_4:67384934-67384953 Msa0697390:three_prime_UTR 40.0%
GGTGCATAATTTCTTTGTGG+TGG - chr4_4:67384990-67385009 Msa0697390:three_prime_UTR 40.0%
! TAATTTCTTTGTGGTGGGGT+TGG - chr4_4:67384996-67385015 Msa0697390:three_prime_UTR 40.0%
TCTCTCGCCGTATATTTAAG+CGG - chr4_4:67385092-67385111 Msa0697390:three_prime_UTR 40.0%
AGCGAAATGCAGAGAACAAA+AGG + chr4_4:67385143-67385162 None:intergenic 40.0%
!!! ACGTAAGCGTGGTTTGTTTT+TGG - chr4_4:67385251-67385270 Msa0697390:three_prime_UTR 40.0%
ATTTCTCCATTCTGATCACC+AGG + chr4_4:67385326-67385345 None:intergenic 40.0%
GCCTCAACCATATCAATTCT+TGG - chr4_4:67385475-67385494 Msa0697390:three_prime_UTR 40.0%
!!! ACTACTTGATTTTGGGGTGT+GGG - chr4_4:67385706-67385725 Msa0697390:three_prime_UTR 40.0%
! GCCGGTTTAATTCTAACTTC+TGG - chr4_4:67385969-67385988 Msa0697390:three_prime_UTR 40.0%
AGAGGAATTACTGCAAAGAG+AGG - chr4_4:67386056-67386075 Msa0697390:three_prime_UTR 40.0%
! CATGTTTGGAATCTAGGAGT+AGG - chr4_4:67386215-67386234 Msa0697390:three_prime_UTR 40.0%
! GGTATTTCCTAATGGTGTTG+TGG - chr4_4:67386277-67386296 Msa0697390:three_prime_UTR 40.0%
CTATTGGGTCTGAAAAGGTA+TGG - chr4_4:67386439-67386458 Msa0697390:three_prime_UTR 40.0%
! GGTCTGAAAAGGTATGGAAA+AGG - chr4_4:67386445-67386464 Msa0697390:three_prime_UTR 40.0%
GCATAAGGACAACACTTACA+TGG + chr4_4:67386578-67386597 None:intergenic 40.0%
TCAAAATCTCCAGTCTTAGG+AGG - chr4_4:67386753-67386772 Msa0697390:intron 40.0%
CAAAATCTCCAGTCTTAGGA+GGG - chr4_4:67386754-67386773 Msa0697390:intron 40.0%
! TATTTTGTCCCTCCTAAGAC+TGG + chr4_4:67386765-67386784 None:intergenic 40.0%
!!! CTTAGTTTTAGGTAACGGCT+TGG - chr4_4:67387117-67387136 Msa0697390:CDS 40.0%
! CTTTGGGAATTTATAGGCTC+AGG - chr4_4:67387377-67387396 Msa0697390:intron 40.0%
! CTCAGGCTTATAAGCCTTTT+AGG - chr4_4:67387394-67387413 Msa0697390:intron 40.0%
! GCCTTTTAGGCAAAATGTGT+TGG - chr4_4:67387407-67387426 Msa0697390:intron 40.0%
! ACTATTTGGGGTATCTTAGC+GGG - chr4_4:67387627-67387646 Msa0697390:intron 40.0%
! GTGACCAGATATGCATGTTT+TGG - chr4_4:67387723-67387742 Msa0697390:intron 40.0%
CTGTTTGTCTGTTGAATTGC+TGG - chr4_4:67387965-67387984 Msa0697390:intron 40.0%
GCTGGCTGTATGTATTTCAA+TGG - chr4_4:67387983-67388002 Msa0697390:intron 40.0%
! AGGCTACTTTCACATACTTG+TGG + chr4_4:67388013-67388032 None:intergenic 40.0%
AGAAGATAAGGATTGACCTG+TGG - chr4_4:67388058-67388077 Msa0697390:CDS 40.0%
TTGACCTGTGGAAATACTTG+AGG - chr4_4:67388070-67388089 Msa0697390:CDS 40.0%
!! CGCTCAACTGGTTGATTTTA+AGG - chr4_4:67388133-67388152 Msa0697390:intron 40.0%
! AAGTGCAATATGATGGGATG+TGG - chr4_4:67388468-67388487 Msa0697390:intron 40.0%
! AGTGCAATATGATGGGATGT+GGG - chr4_4:67388469-67388488 Msa0697390:intron 40.0%
ATGTGGGATATGATGAAAGC+AGG - chr4_4:67388485-67388504 Msa0697390:intron 40.0%
ATACAGTCATATCACGGAGA+TGG + chr4_4:67388574-67388593 None:intergenic 40.0%
ATCTCAGATTGCTCCATCTT+CGG - chr4_4:67388709-67388728 Msa0697390:CDS 40.0%
! AGGGAACTGTTCTGCTGATT+TGG - chr4_4:67384435-67384454 Msa0697390:three_prime_UTR 45.0%
CCAAATCAGAACATCCATGG+AGG + chr4_4:67384801-67384820 None:intergenic 45.0%
CCTCCATGGATGTTCTGATT+TGG - chr4_4:67384798-67384817 Msa0697390:three_prime_UTR 45.0%
GTATTAACATCGGGAACGCA+CGG + chr4_4:67384891-67384910 None:intergenic 45.0%
GTGCGTTCCCGATGTTAATA+CGG - chr4_4:67384890-67384909 Msa0697390:three_prime_UTR 45.0%
! TTTTCGGCGGCACTTCAATT+TGG - chr4_4:67384968-67384987 Msa0697390:three_prime_UTR 45.0%
TTTCGGCGGCACTTCAATTT+GGG - chr4_4:67384969-67384988 Msa0697390:three_prime_UTR 45.0%
ATACTCCTCTTACGTAAGCG+TGG - chr4_4:67385240-67385259 Msa0697390:three_prime_UTR 45.0%
ACAAACCACGCTTACGTAAG+AGG + chr4_4:67385248-67385267 None:intergenic 45.0%
AGTGAACCTGGTGATCAGAA+TGG - chr4_4:67385317-67385336 Msa0697390:three_prime_UTR 45.0%
!!! CACTACTTGATTTTGGGGTG+TGG - chr4_4:67385705-67385724 Msa0697390:three_prime_UTR 45.0%
TGGGGTGTGGGTATATTAGT+AGG - chr4_4:67385718-67385737 Msa0697390:three_prime_UTR 45.0%
GGGGTGTGGGTATATTAGTA+GGG - chr4_4:67385719-67385738 Msa0697390:three_prime_UTR 45.0%
TTCTGGTAGATCTCCTGATC+AGG - chr4_4:67386082-67386101 Msa0697390:three_prime_UTR 45.0%
GTAGATCTCCTGATCAGGAA+AGG - chr4_4:67386087-67386106 Msa0697390:three_prime_UTR 45.0%
GGAGTAGGTGAAGTGAAATC+AGG - chr4_4:67386230-67386249 Msa0697390:three_prime_UTR 45.0%
TCATGGCTAGACACTTGTGT+TGG + chr4_4:67386514-67386533 None:intergenic 45.0%
! GGAGCCACCTTTTAAGCATA+AGG + chr4_4:67386593-67386612 None:intergenic 45.0%
CTTCTCACTGATAGATAGGG+TGG + chr4_4:67386964-67386983 None:intergenic 45.0%
CACCCTATCTATCAGTGAGA+AGG - chr4_4:67386962-67386981 Msa0697390:intron 45.0%
CAAAATGTGTTGGAGGCTCA+TGG - chr4_4:67387417-67387436 Msa0697390:intron 45.0%
ATTGGCACGAGCTCATGATT+AGG - chr4_4:67387457-67387476 Msa0697390:intron 45.0%
TGTTGTTGCGGGATTTGACA+TGG - chr4_4:67387553-67387572 Msa0697390:intron 45.0%
TTGTGCCTTCAGGCTTGTAT+TGG + chr4_4:67387592-67387611 None:intergenic 45.0%
! CTATTTGGGGTATCTTAGCG+GGG - chr4_4:67387628-67387647 Msa0697390:intron 45.0%
!! GAAAGCGTTGCAAGACAGAT+AGG + chr4_4:67387659-67387678 None:intergenic 45.0%
AACAGAATGCAAGAGGGAGT+TGG + chr4_4:67387759-67387778 None:intergenic 45.0%
CGAATCAGTAGGGCATATTC+TGG + chr4_4:67388115-67388134 None:intergenic 45.0%
ACCAGTTGAGCGAATCAGTA+GGG + chr4_4:67388125-67388144 None:intergenic 45.0%
AACCAGTTGAGCGAATCAGT+AGG + chr4_4:67388126-67388145 None:intergenic 45.0%
CAAAGGGATGCTTAGCAGTT+AGG + chr4_4:67388248-67388267 None:intergenic 45.0%
TTCCAGAGACATCCTCCTGT+AGG - chr4_4:67384749-67384768 Msa0697390:three_prime_UTR 50.0%
AGAGACATCCTCCTGTAGGA+GGG - chr4_4:67384753-67384772 Msa0697390:three_prime_UTR 50.0%
CAAATAACCCCTCCTACAGG+AGG + chr4_4:67384764-67384783 None:intergenic 50.0%
CAGAACATCCATGGAGGAGT+TGG + chr4_4:67384795-67384814 None:intergenic 50.0%
ACTGCAAAGAGAGGCTCTTC+TGG - chr4_4:67386065-67386084 Msa0697390:three_prime_UTR 50.0%
CCTCTCTTCCTTTCCTGATC+AGG + chr4_4:67386098-67386117 None:intergenic 50.0%
CCTGATCAGGAAAGGAAGAG+AGG - chr4_4:67386095-67386114 Msa0697390:three_prime_UTR 50.0%
! AAAGGAAGAGAGGTGTGCCA+TGG - chr4_4:67386105-67386124 Msa0697390:three_prime_UTR 50.0%
CTGGTCCAATACAAGCCTGA+AGG - chr4_4:67387584-67387603 Msa0697390:intron 50.0%
GGAATTACATGGTCAGGGCT+TGG - chr4_4:67387834-67387853 Msa0697390:CDS 50.0%
CAGTCATATCACGGAGATGG+AGG + chr4_4:67388571-67388590 None:intergenic 50.0%
CTCCTACAGGAGGATGTCTC+TGG + chr4_4:67384754-67384773 None:intergenic 55.0%
CAGAGACATCCTCCTGTAGG+AGG - chr4_4:67384752-67384771 Msa0697390:three_prime_UTR 55.0%
GAGACATCCTCCTGTAGGAG+GGG - chr4_4:67384754-67384773 Msa0697390:three_prime_UTR 55.0%
GCGCAAATAACCCCTCCTAC+AGG + chr4_4:67384767-67384786 None:intergenic 55.0%
CGCTAGATCCAACTCCTCCA+TGG - chr4_4:67384784-67384803 Msa0697390:three_prime_UTR 55.0%
!! GCCCTACTGATTCGCTCAAC+TGG - chr4_4:67388121-67388140 Msa0697390:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 67384421 67388738 67384421 ID=Msa0697390;Name=Msa0697390
chr4_4 mRNA 67384421 67388738 67384421 ID=Msa0697390-mRNA-1;Parent=Msa0697390;Name=Msa0697390-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.2|0.33|0.83|1|1|6|2156|202
chr4_4 exon 67384421 67386727 67384421 ID=Msa0697390-mRNA-1:exon:19787;Parent=Msa0697390-mRNA-1
chr4_4 exon 67387015 67387192 67387015 ID=Msa0697390-mRNA-1:exon:19786;Parent=Msa0697390-mRNA-1
chr4_4 exon 67387329 67387383 67387329 ID=Msa0697390-mRNA-1:exon:19785;Parent=Msa0697390-mRNA-1
chr4_4 exon 67387810 67387878 67387810 ID=Msa0697390-mRNA-1:exon:19784;Parent=Msa0697390-mRNA-1
chr4_4 exon 67387984 67388092 67387984 ID=Msa0697390-mRNA-1:exon:19783;Parent=Msa0697390-mRNA-1
chr4_4 exon 67388692 67388738 67388692 ID=Msa0697390-mRNA-1:exon:19782;Parent=Msa0697390-mRNA-1
chr4_4 CDS 67388692 67388738 67388692 ID=Msa0697390-mRNA-1:cds;Parent=Msa0697390-mRNA-1
chr4_4 CDS 67387984 67388092 67387984 ID=Msa0697390-mRNA-1:cds;Parent=Msa0697390-mRNA-1
chr4_4 CDS 67387810 67387878 67387810 ID=Msa0697390-mRNA-1:cds;Parent=Msa0697390-mRNA-1
chr4_4 CDS 67387329 67387383 67387329 ID=Msa0697390-mRNA-1:cds;Parent=Msa0697390-mRNA-1
chr4_4 CDS 67387015 67387192 67387015 ID=Msa0697390-mRNA-1:cds;Parent=Msa0697390-mRNA-1
chr4_4 CDS 67386577 67386727 67386577 ID=Msa0697390-mRNA-1:cds;Parent=Msa0697390-mRNA-1
chr4_4 three_prime_UTR 67384421 67386576 67384421 ID=Msa0697390-mRNA-1:three_prime_utr;Parent=Msa0697390-mRNA-1
Gene Sequence

>Msa0697390

ATGGAGCTATTTCAAGGGAACTGTTCTGCTGATTTGGCAATTTCTGGTTTTGTTTTGTTGTTGGTGGGCATGTCTCTCGCCGTATATTTAAGCGGTGTTTGTGTATCGTTTGAATCCATTCCTTTTGTTCTCTGCATTTCGCTGATAAATTGTGCTCCATCGTTGAATTCACATCTATTCTATTGTTGTTGTAGTGAACCTGGTGATCAGAATGGAGAAATTACAGTGTTTGATAAAATGCCTATGAATAAAATTTGGTGTTTAGCATCACATGTTTTTGAAGCCGGTTTAATTCTAACTTCTGGTTATAGTACTACTGCTTTACCCTTTACCTTAAATTTGGTGAATTCTTCTGTTTATGATGGTTTTAGAGGAATTACTGCAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAGGAAAGGAAGAGAGGTGTGCCATGGACTGAAGAAAAACATAAGTTATTTCTATTGGGTCTGAAAAGGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAATTTTGTGATCATTAGGAAGCCAACACAAGTGTCTAGCCATGAAGCTCCAACAAGTAAAAAATTGAATTTGAAGGCGGTGGCAACCATGTAA
Protein sequence

>Msa0697390

MELFQGNCSADLAISGFVLLLVGMSLAVYLSGVCVSFESIPFVLCISLINCAPSLNSHLFYCCCSEPGDQNGEITVFDKMPMNKIWCLASHVFEAGLILTSGYSTTALPFTLNLVNSSVYDGFRGITAKRGSSGRSPDQERKRGVPWTEEKHKLFLLGLKRYGKGDWRNISRNFVIIRKPTQVSSHEAPTSKKLNLKAVATM*