Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152280 | XP_013466553.1 | 93.915 | 378 | 4 | 1 | 1 | 359 | 1 | 378 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152280 | sp|Q9ZU97|VAC14_ARATH | 84.392 | 378 | 40 | 1 | 1 | 359 | 1 | 378 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152280 | A0A072VR25 | 93.915 | 378 | 4 | 1 | 1 | 359 | 1 | 378 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061250 | Msa0152280 | 0.835035 | 2.120547e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152280 | MtrunA17_Chr1g0161241 | 93.915 | 378 | 4 | 1 | 1 | 359 | 1 | 378 | 0.0 | 715 |
| Msa0152280 | MtrunA17_Chr8g0391721 | 87.566 | 378 | 28 | 1 | 1 | 359 | 1 | 378 | 0.0 | 672 |
| Msa0152280 | MtrunA17_Chr1g0161971 | 95.000 | 120 | 6 | 0 | 237 | 356 | 1 | 120 | 2.00e-75 | 229 |
| Msa0152280 | MtrunA17_Chr1g0161981 | 95.000 | 40 | 2 | 0 | 184 | 223 | 24 | 63 | 1.29e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152280 | AT2G01690.1 | 84.392 | 378 | 40 | 1 | 1 | 359 | 1 | 378 | 0.0 | 652 |
| Msa0152280 | AT2G01690.2 | 84.169 | 379 | 40 | 2 | 1 | 359 | 1 | 379 | 0.0 | 647 |
Find 78 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATACGATGTCTGTTTAAC+AGG | 0.212869 | 1_4:+14876998 | None:intergenic |
| CCATACTATGCTGACATTCT+TGG | 0.222445 | 1_4:-14877556 | Msa0152280:CDS |
| GTGAAATTGTAGTTGAAATT+TGG | 0.233119 | 1_4:+14882174 | None:intergenic |
| TGAAAATCAGATCTAGAAAT+TGG | 0.260872 | 1_4:+14882125 | None:intergenic |
| TGGTCGAATGGCTGAAATTC+TGG | 0.300744 | 1_4:-14877816 | Msa0152280:CDS |
| AAGATAATTAATAATAATTA+CGG | 0.318532 | 1_4:+14882233 | None:intergenic |
| GATTGCTCGTAGCTCTTCAT+TGG | 0.342489 | 1_4:+14877327 | None:intergenic |
| ATCAGATATGCAAGGCAAAA+TGG | 0.345788 | 1_4:+14877531 | None:intergenic |
| TGCGGATTTCGTTTCGAGAA+TGG | 0.362332 | 1_4:+14882055 | None:intergenic |
| GGCTTATTTGTAAGGTTGCT+CGG | 0.366594 | 1_4:-14877354 | Msa0152280:intron |
| AAACCCAGCATATCAATATC+TGG | 0.373803 | 1_4:+14878370 | None:intergenic |
| TCAGATCTAGAAATTGGAAT+TGG | 0.380790 | 1_4:+14882131 | None:intergenic |
| CCAAGAATGTCAGCATAGTA+TGG | 0.383598 | 1_4:+14877556 | None:intergenic |
| GGTAGGATGGATTACTGTAT+TGG | 0.385066 | 1_4:-14878401 | Msa0152280:CDS |
| CACTCACCATCAAGAAAATC+AGG | 0.388028 | 1_4:+14878343 | None:intergenic |
| AATAACGAACTCTGCTATCT+TGG | 0.393017 | 1_4:+14879043 | None:intergenic |
| TTCATGCGCTCCCTCAATAA+TGG | 0.402107 | 1_4:+14878454 | None:intergenic |
| CTCTTGAAGTCTGTAGATTA+TGG | 0.410233 | 1_4:-14877836 | Msa0152280:intron |
| AGAGCATCCGCCATTGAAAC+AGG | 0.413598 | 1_4:+14881945 | None:intergenic |
| AAAGCTTATCGGCGAGGTTA+CGG | 0.418298 | 1_4:+14881898 | None:intergenic |
| TGTTCCAGATATTGATATGC+TGG | 0.422720 | 1_4:-14878374 | Msa0152280:CDS |
| CAACTACAATTTCACACAAA+CGG | 0.424202 | 1_4:-14882166 | Msa0152280:five_prime_UTR |
| CTGATTTCAACCTGTTTCAA+TGG | 0.424226 | 1_4:-14881955 | Msa0152280:exon |
| GTGAAGCAGCTTGCTTCTGC+TGG | 0.425659 | 1_4:-14881750 | Msa0152280:CDS |
| TGACCGAAAGTGATCAGTTC+AGG | 0.428919 | 1_4:-14878628 | Msa0152280:intron |
| CGCAATGTTTCGTTTCGAGC+AGG | 0.430884 | 1_4:-14882036 | Msa0152280:five_prime_UTR |
| AAGAATTTATACCATTATTG+AGG | 0.438037 | 1_4:-14878465 | Msa0152280:CDS |
| GTTAACCTAGTAAATTCATC+TGG | 0.441009 | 1_4:+14877776 | None:intergenic |
| GCACCTGAACTGATCACTTT+CGG | 0.449959 | 1_4:+14878625 | None:intergenic |
| AGTTTAGCTGCTGCTACCGT+TGG | 0.459371 | 1_4:-14881348 | Msa0152280:CDS |
| AGAATTTATACCATTATTGA+GGG | 0.465007 | 1_4:-14878464 | Msa0152280:CDS |
| GTTCTCCAGATGAATTTACT+AGG | 0.466712 | 1_4:-14877781 | Msa0152280:CDS |
| AATGAGTTTGTCAAACTTGG+TGG | 0.474926 | 1_4:-14877592 | Msa0152280:CDS |
| GTTTAGCTGCTGCTACCGTT+GGG | 0.481182 | 1_4:-14881347 | Msa0152280:CDS |
| TGCATAAGGCATCAAAGATC+TGG | 0.484889 | 1_4:+14878872 | None:intergenic |
| ATAAATGAGTTTGTCAAACT+TGG | 0.493378 | 1_4:-14877595 | Msa0152280:CDS |
| GCTTATTTGTAAGGTTGCTC+GGG | 0.495026 | 1_4:-14877353 | Msa0152280:intron |
| ATCTGCAGAAAGCTTGCATA+AGG | 0.501879 | 1_4:+14878858 | None:intergenic |
| TTTCTGAGAAACTGTTGAGC+TGG | 0.508109 | 1_4:+14882278 | None:intergenic |
| TTAGGCAACTCTCTAGTGAA+TGG | 0.509895 | 1_4:-14877059 | Msa0152280:intron |
| ATCAAAAGCTTCAGCTGGAT+CGG | 0.510148 | 1_4:+14877300 | None:intergenic |
| CTCGAATCGAAGCTTTGCAT+TGG | 0.511173 | 1_4:-14877029 | Msa0152280:CDS |
| AGGTTACGGAGCACGGCGGC+CGG | 0.518733 | 1_4:+14881912 | None:intergenic |
| GTTCCAGATATTGATATGCT+GGG | 0.521529 | 1_4:-14878373 | Msa0152280:CDS |
| GAAATTCTGGTACAGAGGGC+TGG | 0.529861 | 1_4:-14877803 | Msa0152280:CDS |
| CCTACATCAAAAGCTTCAGC+TGG | 0.531054 | 1_4:+14877295 | None:intergenic |
| TAGGCAACTCTCTAGTGAAT+GGG | 0.531096 | 1_4:-14877058 | Msa0152280:CDS |
| ATCGGCGAGGTTACGGAGCA+CGG | 0.537982 | 1_4:+14881905 | None:intergenic |
| TTGTTTGGAATTAGGTTGAG+GGG | 0.539735 | 1_4:-14881776 | Msa0152280:intron |
| GGCTGAAATTCTGGTACAGA+GGG | 0.547336 | 1_4:-14877807 | Msa0152280:CDS |
| CTAGGTTAACAGCTATCACA+TGG | 0.560734 | 1_4:-14877763 | Msa0152280:CDS |
| ATTGTTTGGAATTAGGTTGA+GGG | 0.564890 | 1_4:-14881777 | Msa0152280:intron |
| TAAAGAAGAGAAAATTAGAG+TGG | 0.570631 | 1_4:-14877509 | Msa0152280:intron |
| GTTAAACAGACATCGTATTG+AGG | 0.572840 | 1_4:-14876995 | Msa0152280:CDS |
| ACGAACTCTGCTATCTTGGT+CGG | 0.573813 | 1_4:+14879047 | None:intergenic |
| ATTTCAACCTGTTTCAATGG+CGG | 0.580914 | 1_4:-14881952 | Msa0152280:exon |
| AAAACTACACCTCCTTGCAA+TGG | 0.592191 | 1_4:+14877261 | None:intergenic |
| TGGCTGAAATTCTGGTACAG+AGG | 0.592454 | 1_4:-14877808 | Msa0152280:CDS |
| GTCTGTAGATTATGGTCGAA+TGG | 0.594824 | 1_4:-14877828 | Msa0152280:CDS |
| GGATGCTCTCACTGTCATGC+CGG | 0.600572 | 1_4:-14881931 | Msa0152280:CDS |
| ATGTGCAGCACTTTGTACAT+TGG | 0.607908 | 1_4:+14878828 | None:intergenic |
| TCTTCTTTATCAGATATGCA+AGG | 0.610375 | 1_4:+14877523 | None:intergenic |
| CAGCATAGTATGGAACAAGC+TGG | 0.612362 | 1_4:+14877566 | None:intergenic |
| AGCACTATATAACATTGCTA+AGG | 0.614582 | 1_4:-14879010 | Msa0152280:intron |
| GAGCAATCCTCTCCATTGCA+AGG | 0.617500 | 1_4:-14877273 | Msa0152280:CDS |
| TCTCTTAGATCGACTCGTGA+AGG | 0.618562 | 1_4:-14878806 | Msa0152280:intron |
| TACACCTCCTTGCAATGGAG+AGG | 0.635366 | 1_4:+14877266 | None:intergenic |
| AATACGATGTCTGTTTAACA+GGG | 0.645216 | 1_4:+14876999 | None:intergenic |
| GCAACTCTCTAGTGAATGGG+AGG | 0.647513 | 1_4:-14877055 | Msa0152280:CDS |
| TGAAGCTGCTCAGCATCTCG+AGG | 0.650953 | 1_4:-14881316 | Msa0152280:intron |
| CTGCTCGAAACGAAACATTG+CGG | 0.651177 | 1_4:+14882037 | None:intergenic |
| GAGAAAGAATTTAACACAGG+AGG | 0.675983 | 1_4:+14879069 | None:intergenic |
| AGCTTCATTAGTCAACCCAA+CGG | 0.678054 | 1_4:+14881332 | None:intergenic |
| TCGGAGAAAGAATTTAACAC+AGG | 0.679939 | 1_4:+14879066 | None:intergenic |
| TTTCGTAAAGCTTATCGGCG+AGG | 0.680957 | 1_4:+14881892 | None:intergenic |
| CAATCCTCTCCATTGCAAGG+AGG | 0.713214 | 1_4:-14877270 | Msa0152280:intron |
| TAGGTTAACAGCTATCACAT+GGG | 0.732638 | 1_4:-14877762 | Msa0152280:intron |
| GGCGAGGTTACGGAGCACGG+CGG | 0.770251 | 1_4:+14881908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTTATGTTTTTATATTT+TGG | - | chr1_4:14877789-14877808 | Msa0152280:CDS | 10.0% |
| !! | AAAAAAATTACTTTAATCAT+AGG | + | chr1_4:14879155-14879174 | None:intergenic | 10.0% |
| !!! | AAATTTGAAGTTTCTTTTTT+AGG | + | chr1_4:14877042-14877061 | None:intergenic | 15.0% |
| !!! | AATGGAAATTTTGATTTTAT+TGG | + | chr1_4:14877175-14877194 | None:intergenic | 15.0% |
| !!! | ATTAATATGAAATTCGTTTT+CGG | + | chr1_4:14877242-14877261 | None:intergenic | 15.0% |
| !!! | ATTTTGGGTATTATTTAAAT+TGG | + | chr1_4:14877642-14877661 | None:intergenic | 15.0% |
| !!! | ATCATTTTCAAAATTAATCT+AGG | - | chr1_4:14878522-14878541 | Msa0152280:intron | 15.0% |
| !! | TTAAAGTTAAAAATTGTGTT+AGG | - | chr1_4:14878643-14878662 | Msa0152280:intron | 15.0% |
| !! | GATATTCTAATTCTAATATT+TGG | - | chr1_4:14879291-14879310 | Msa0152280:intron | 15.0% |
| !! | TTAGTTGATTGTTGAAAATT+TGG | - | chr1_4:14877431-14877450 | Msa0152280:intron | 20.0% |
| !!! | ATTTTGGTATTGTTGATTAT+TGG | - | chr1_4:14877805-14877824 | Msa0152280:CDS | 20.0% |
| !!! | TGTGATTATTGTTATTGTAT+TGG | - | chr1_4:14877852-14877871 | Msa0152280:intron | 20.0% |
| !!! | AATTGATAGCTAACTTTTAA+GGG | + | chr1_4:14878451-14878470 | None:intergenic | 20.0% |
| !!! | TAATTGATAGCTAACTTTTA+AGG | + | chr1_4:14878452-14878471 | None:intergenic | 20.0% |
| !! | TTTCAAAATTAATCTAGGTA+CGG | - | chr1_4:14878527-14878546 | Msa0152280:intron | 20.0% |
| !!! | CTTATATTGTTTTCTACATT+CGG | + | chr1_4:14878975-14878994 | None:intergenic | 20.0% |
| !!! | AACAATATAAGAAAGTATCT+TGG | - | chr1_4:14878984-14879003 | Msa0152280:intron | 20.0% |
| !!! | GTTGAATAATTCACTTTTTA+TGG | - | chr1_4:14879049-14879068 | Msa0152280:CDS | 20.0% |
| !! | TTTCCATTTAAACTTATATC+AGG | - | chr1_4:14879185-14879204 | Msa0152280:intron | 20.0% |
| !! | ACACAGAAAAATAATGTAAA+TGG | + | chr1_4:14879507-14879526 | None:intergenic | 20.0% |
| !! | GTCATTTACATTATTATTCT+GGG | - | chr1_4:14879656-14879675 | Msa0152280:intron | 20.0% |
| !! | ATAGATAATACTAAATGATG+TGG | + | chr1_4:14879961-14879980 | None:intergenic | 20.0% |
| !! | TTAATTAGCTAATCTCTATT+TGG | + | chr1_4:14880536-14880555 | None:intergenic | 20.0% |
| !! | TAATCAGTAGTTAATCTAAA+AGG | + | chr1_4:14880569-14880588 | None:intergenic | 20.0% |
| !! | AAGAATTTATACCATTATTG+AGG | - | chr1_4:14880780-14880799 | Msa0152280:intron | 20.0% |
| !! | AGAATTTATACCATTATTGA+GGG | - | chr1_4:14880781-14880800 | Msa0152280:intron | 20.0% |
| !! | TATATTAGAAGAAATCTTAC+TGG | + | chr1_4:14881100-14881119 | None:intergenic | 20.0% |
| !! | ATAGATAAAATCCTTAACAT+GGG | + | chr1_4:14881251-14881270 | None:intergenic | 20.0% |
| !! | AATAGATAAAATCCTTAACA+TGG | + | chr1_4:14881252-14881271 | None:intergenic | 20.0% |
| !! | TAAATTGTAAAAAGAAAGTG+GGG | + | chr1_4:14881777-14881796 | None:intergenic | 20.0% |
| !! | GTAAATTGTAAAAAGAAAGT+GGG | + | chr1_4:14881778-14881797 | None:intergenic | 20.0% |
| !! | AGTAAATTGTAAAAAGAAAG+TGG | + | chr1_4:14881779-14881798 | None:intergenic | 20.0% |
| !!! | AATGTGAAATAATTTGTTTC+TGG | - | chr1_4:14881870-14881889 | Msa0152280:CDS | 20.0% |
| !!! | GAAAAAAATGATTTTTACAG+TGG | - | chr1_4:14882054-14882073 | Msa0152280:five_prime_UTR | 20.0% |
| ! | GTGAAATTGTAGTTGAAATT+TGG | + | chr1_4:14877074-14877093 | None:intergenic | 25.0% |
| ! | TGAAAATCAGATCTAGAAAT+TGG | + | chr1_4:14877123-14877142 | None:intergenic | 25.0% |
| !! | TGAAAATTTGGTGAAATTTG+AGG | - | chr1_4:14877443-14877462 | Msa0152280:intron | 25.0% |
| !! | GAAAATTTGGTGAAATTTGA+GGG | - | chr1_4:14877444-14877463 | Msa0152280:intron | 25.0% |
| !! | AAAATGTCAGAGACTATTTT+GGG | + | chr1_4:14877657-14877676 | None:intergenic | 25.0% |
| !! | AGTTTCTTTGTTATAATGAG+TGG | - | chr1_4:14877689-14877708 | Msa0152280:intron | 25.0% |
| !! | GTTTCTTTGTTATAATGAGT+GGG | - | chr1_4:14877690-14877709 | Msa0152280:intron | 25.0% |
| !! | TTTCTTTGTTATAATGAGTG+GGG | - | chr1_4:14877691-14877710 | Msa0152280:intron | 25.0% |
| !! | TTATTGTATTGGTATGATGA+AGG | - | chr1_4:14877863-14877882 | Msa0152280:intron | 25.0% |
| !! | TATTGTATTGGTATGATGAA+GGG | - | chr1_4:14877864-14877883 | Msa0152280:intron | 25.0% |
| ! | AAGTTATGCAAAGTTTATCA+CGG | - | chr1_4:14878071-14878090 | Msa0152280:intron | 25.0% |
| ! | TGAAATTAGAATCTTCATAG+TGG | - | chr1_4:14878102-14878121 | Msa0152280:intron | 25.0% |
| ! | CTTAAATAGCATTCTATGAA+GGG | - | chr1_4:14878216-14878235 | Msa0152280:CDS | 25.0% |
| ! | TTCAAAATTAATCTAGGTAC+GGG | - | chr1_4:14878528-14878547 | Msa0152280:intron | 25.0% |
| ! | ATTATAAGATAAAGTGGGAA+GGG | + | chr1_4:14879026-14879045 | None:intergenic | 25.0% |
| ! | TTCCCACTTTATCTTATAAT+GGG | - | chr1_4:14879026-14879045 | Msa0152280:CDS | 25.0% |
| ! | ATTCTACAAACACTAAAGAA+GGG | + | chr1_4:14879085-14879104 | None:intergenic | 25.0% |
| ! | AATTCTACAAACACTAAAGA+AGG | + | chr1_4:14879086-14879105 | None:intergenic | 25.0% |
| ! | AAGCCTGATATAAGTTTAAA+TGG | + | chr1_4:14879191-14879210 | None:intergenic | 25.0% |
| ! | TATTATTCTGTGTCAATATG+TGG | - | chr1_4:14879320-14879339 | Msa0152280:intron | 25.0% |
| ! | AACAGATAATAATAATGGCA+AGG | + | chr1_4:14879459-14879478 | None:intergenic | 25.0% |
| ! | TGTGCAACAGATAATAATAA+TGG | + | chr1_4:14879464-14879483 | None:intergenic | 25.0% |
| !! | ATCTGTTGCACAATTAATTT+TGG | - | chr1_4:14879472-14879491 | Msa0152280:intron | 25.0% |
| ! | GAAAAATAATGTAAATGGCA+TGG | + | chr1_4:14879502-14879521 | None:intergenic | 25.0% |
| !! | TATTTTTCTGTGTAAATGTG+TGG | - | chr1_4:14879514-14879533 | Msa0152280:intron | 25.0% |
| !! | ATCTGTTGCACTATTAATTT+TGG | - | chr1_4:14879625-14879644 | Msa0152280:intron | 25.0% |
| ! | GAATAATAATGTAAATGACG+TGG | + | chr1_4:14879655-14879674 | None:intergenic | 25.0% |
| ! | CGTCATTTACATTATTATTC+TGG | - | chr1_4:14879655-14879674 | Msa0152280:intron | 25.0% |
| !! | ATCTGTTGCACAATTAATTT+TGG | - | chr1_4:14879472-14879491 | Msa0152280:intron | 25.0% |
| ! | CAGTAATAATGAAAATTACG+TGG | + | chr1_4:14879808-14879827 | None:intergenic | 25.0% |
| !! | ATCTGTTGCACAATTAATTT+TGG | - | chr1_4:14879472-14879491 | Msa0152280:intron | 25.0% |
| ! | ATCTATTGCACAATTAATCT+TGG | - | chr1_4:14879975-14879994 | Msa0152280:intron | 25.0% |
| ! | AAAGATTATACTAAATGACG+TGG | + | chr1_4:14880005-14880024 | None:intergenic | 25.0% |
| ! | AATATCAAGAAATGAAAGCA+GGG | + | chr1_4:14880752-14880771 | None:intergenic | 25.0% |
| !!! | TAATCATTTTTAAATGCCTC+AGG | - | chr1_4:14880983-14881002 | Msa0152280:intron | 25.0% |
| ! | AAAAATGATAAAAGCAGAAC+TGG | + | chr1_4:14881170-14881189 | None:intergenic | 25.0% |
| ! | ATAAATGAGTTTGTCAAACT+TGG | - | chr1_4:14881650-14881669 | Msa0152280:intron | 25.0% |
| ! | TAAAGAAGAGAAAATTAGAG+TGG | - | chr1_4:14881736-14881755 | Msa0152280:CDS | 25.0% |
| ! | CTATAGTTGGTTAAACAAAA+GGG | + | chr1_4:14882119-14882138 | None:intergenic | 25.0% |
| ! | ACTATAGTTGGTTAAACAAA+AGG | + | chr1_4:14882120-14882139 | None:intergenic | 25.0% |
| !!! | ATTATTCTGTGTACTGATTT+TGG | - | chr1_4:14882148-14882167 | Msa0152280:five_prime_UTR | 25.0% |
| !!! | TTATTCTGTGTACTGATTTT+GGG | - | chr1_4:14882149-14882168 | Msa0152280:five_prime_UTR | 25.0% |
| CAACTACAATTTCACACAAA+CGG | - | chr1_4:14877079-14877098 | Msa0152280:intron | 30.0% | |
| TCAGATCTAGAAATTGGAAT+TGG | + | chr1_4:14877117-14877136 | None:intergenic | 30.0% | |
| ! | TTTTATTGGAATTGCGATTC+AGG | + | chr1_4:14877161-14877180 | None:intergenic | 30.0% |
| TGAAATTTGAGGGAATTGTT+TGG | - | chr1_4:14877454-14877473 | Msa0152280:intron | 30.0% | |
| ! | AATTGTTTGGAATTAGGTTG+AGG | - | chr1_4:14877467-14877486 | Msa0152280:intron | 30.0% |
| !! | ATTGTTTGGAATTAGGTTGA+GGG | - | chr1_4:14877468-14877487 | Msa0152280:intron | 30.0% |
| ! | GAATTATCACAATTTTACCG+CGG | - | chr1_4:14877615-14877634 | Msa0152280:intron | 30.0% |
| GTATTATTTAAATTGGACCG+CGG | + | chr1_4:14877635-14877654 | None:intergenic | 30.0% | |
| ! | GAAAATGTCAGAGACTATTT+TGG | + | chr1_4:14877658-14877677 | None:intergenic | 30.0% |
| AGTTATGCAAAGTTTATCAC+GGG | - | chr1_4:14878072-14878091 | Msa0152280:intron | 30.0% | |
| GCTTAAATAGCATTCTATGA+AGG | - | chr1_4:14878215-14878234 | Msa0152280:CDS | 30.0% | |
| CGTATAGTAATTAAGTAGCT+GGG | + | chr1_4:14878249-14878268 | None:intergenic | 30.0% | |
| TCGTATAGTAATTAAGTAGC+TGG | + | chr1_4:14878250-14878269 | None:intergenic | 30.0% | |
| GTTAGTAACTCAGGTATTAT+GGG | + | chr1_4:14878307-14878326 | None:intergenic | 30.0% | |
| TGTTAGTAACTCAGGTATTA+TGG | + | chr1_4:14878308-14878327 | None:intergenic | 30.0% | |
| TATTCTGCAAGTGATTCATT+TGG | - | chr1_4:14878364-14878383 | Msa0152280:CDS | 30.0% | |
| TCATCAATTGATATCAGAGA+GGG | + | chr1_4:14878404-14878423 | None:intergenic | 30.0% | |
| TCAACAGAGATAGGTATAAT+GGG | + | chr1_4:14878914-14878933 | None:intergenic | 30.0% | |
| ATTATACCTATCTCTGTTGA+GGG | - | chr1_4:14878914-14878933 | Msa0152280:intron | 30.0% | |
| CATTATAAGATAAAGTGGGA+AGG | + | chr1_4:14879027-14879046 | None:intergenic | 30.0% | |
| CTTCCCACTTTATCTTATAA+TGG | - | chr1_4:14879025-14879044 | Msa0152280:CDS | 30.0% | |
| TCCCACTTTATCTTATAATG+GGG | - | chr1_4:14879027-14879046 | Msa0152280:CDS | 30.0% | |
| ACCCCATTATAAGATAAAGT+GGG | + | chr1_4:14879031-14879050 | None:intergenic | 30.0% | |
| AACCCCATTATAAGATAAAG+TGG | + | chr1_4:14879032-14879051 | None:intergenic | 30.0% | |
| TATGTTCTTACTCAATAGGA+GGG | + | chr1_4:14879121-14879140 | None:intergenic | 30.0% | |
| ACACTATGTTCTTACTCAAT+AGG | + | chr1_4:14879125-14879144 | None:intergenic | 30.0% | |
| TTTGCATTGTCTATATAGCA+CGG | - | chr1_4:14879377-14879396 | Msa0152280:intron | 30.0% | |
| ! | CTATATAGCTCGAGAAATTT+TGG | - | chr1_4:14879581-14879600 | Msa0152280:intron | 30.0% |
| ACAGATAATACTAAATGACG+TGG | + | chr1_4:14879611-14879630 | None:intergenic | 30.0% | |
| ACAGATAATACTAAATGACG+TGG | + | chr1_4:14879611-14879630 | None:intergenic | 30.0% | |
| TTTGCATTGTCTATTTAGCA+TGG | - | chr1_4:14879877-14879896 | Msa0152280:intron | 30.0% | |
| TTGCATTGTCTATTTAGCAT+GGG | - | chr1_4:14879878-14879897 | Msa0152280:intron | 30.0% | |
| ! | CTATTTAGCATGGGAAATTT+TGG | - | chr1_4:14879887-14879906 | Msa0152280:intron | 30.0% |
| AGCACTATATAACATTGCTA+AGG | - | chr1_4:14880235-14880254 | Msa0152280:intron | 30.0% | |
| TATATAACATTGCTAAGGTG+AGG | - | chr1_4:14880240-14880259 | Msa0152280:intron | 30.0% | |
| CAACAAAACACAATTCACAT+TGG | + | chr1_4:14880317-14880336 | None:intergenic | 30.0% | |
| ! | ACACTCTAATCTTTTAACAC+AGG | - | chr1_4:14880588-14880607 | Msa0152280:intron | 30.0% |
| TATCAACAAGTCTCTTTGAA+AGG | + | chr1_4:14880691-14880710 | None:intergenic | 30.0% | |
| GAAGCAGTATAAGTTACATT+AGG | + | chr1_4:14880723-14880742 | None:intergenic | 30.0% | |
| ATATCAAGAAATGAAAGCAG+GGG | + | chr1_4:14880751-14880770 | None:intergenic | 30.0% | |
| GAATATCAAGAAATGAAAGC+AGG | + | chr1_4:14880753-14880772 | None:intergenic | 30.0% | |
| ! | TTTCTTCCTGATTTTCTTGA+TGG | - | chr1_4:14880896-14880915 | Msa0152280:intron | 30.0% |
| CAACATATTAAACAAACCTG+AGG | + | chr1_4:14881002-14881021 | None:intergenic | 30.0% | |
| ! | TGTTTGAGTAGCAATTCTTT+TGG | - | chr1_4:14881131-14881150 | Msa0152280:intron | 30.0% |
| !!! | CAATTCTTTTGGAATTCTTC+AGG | - | chr1_4:14881142-14881161 | Msa0152280:intron | 30.0% |
| GTTAACCTAGTAAATTCATC+TGG | + | chr1_4:14881472-14881491 | None:intergenic | 30.0% | |
| TCTTCTTTATCAGATATGCA+AGG | + | chr1_4:14881725-14881744 | None:intergenic | 30.0% | |
| AAGAGAAAATTAGAGTGGTA+GGG | - | chr1_4:14881741-14881760 | Msa0152280:CDS | 30.0% | |
| ACACTAAAATATGGGACAAA+TGG | + | chr1_4:14881813-14881832 | None:intergenic | 30.0% | |
| !! | TTGTTTCTGGCTTATTTGTA+AGG | - | chr1_4:14881883-14881902 | Msa0152280:CDS | 30.0% |
| ! | AGTTTTCTAACCTTGGAAAA+AGG | - | chr1_4:14882001-14882020 | Msa0152280:five_prime_UTR | 30.0% |
| TAATCAGTGCAAACTATAGT+TGG | + | chr1_4:14882132-14882151 | None:intergenic | 30.0% | |
| AATACGATGTCTGTTTAACA+GGG | + | chr1_4:14882249-14882268 | None:intergenic | 30.0% | |
| CTGATTTCAACCTGTTTCAA+TGG | - | chr1_4:14877290-14877309 | Msa0152280:CDS | 35.0% | |
| ATTTCAACCTGTTTCAATGG+CGG | - | chr1_4:14877293-14877312 | Msa0152280:CDS | 35.0% | |
| ! | GCGTTTTTCGTAAAGCTTAT+CGG | + | chr1_4:14877361-14877380 | None:intergenic | 35.0% |
| ! | TGAGGGAATTGTTTGGAATT+AGG | - | chr1_4:14877461-14877480 | Msa0152280:intron | 35.0% |
| !! | TTGTTTGGAATTAGGTTGAG+GGG | - | chr1_4:14877469-14877488 | Msa0152280:intron | 35.0% |
| ! | AGTCTCTGACATTTTCATAC+TGG | - | chr1_4:14877662-14877681 | Msa0152280:intron | 35.0% |
| ! | GTCTCTGACATTTTCATACT+GGG | - | chr1_4:14877663-14877682 | Msa0152280:intron | 35.0% |
| AGCGACTAATGAAAATTGTG+AGG | - | chr1_4:14877742-14877761 | Msa0152280:intron | 35.0% | |
| GCGACTAATGAAAATTGTGA+GGG | - | chr1_4:14877743-14877762 | Msa0152280:intron | 35.0% | |
| AAAATTGTGAGGGATCGAAA+TGG | - | chr1_4:14877753-14877772 | Msa0152280:intron | 35.0% | |
| AAATTGTGAGGGATCGAAAT+GGG | - | chr1_4:14877754-14877773 | Msa0152280:intron | 35.0% | |
| TATGGTTGTACTTGCAATCT+TGG | - | chr1_4:14878036-14878055 | Msa0152280:intron | 35.0% | |
| !! | AGAATCTTCATAGTGGACAT+TGG | - | chr1_4:14878109-14878128 | Msa0152280:intron | 35.0% |
| TTTATGTGTATGTGAGCTTC+AGG | - | chr1_4:14878154-14878173 | Msa0152280:intron | 35.0% | |
| TTATGTGTATGTGAGCTTCA+GGG | - | chr1_4:14878155-14878174 | Msa0152280:intron | 35.0% | |
| ACATCTCATACTAATCGATG+TGG | - | chr1_4:14878271-14878290 | Msa0152280:intron | 35.0% | |
| CATCTCATACTAATCGATGT+GGG | - | chr1_4:14878272-14878291 | Msa0152280:intron | 35.0% | |
| GGATACTATGTTAGTAACTC+AGG | + | chr1_4:14878316-14878335 | None:intergenic | 35.0% | |
| CATCAATTGATATCAGAGAG+GGG | + | chr1_4:14878403-14878422 | None:intergenic | 35.0% | |
| CTCATCAATTGATATCAGAG+AGG | + | chr1_4:14878405-14878424 | None:intergenic | 35.0% | |
| !! | TGATAGCTAACTTTTAAGGG+AGG | + | chr1_4:14878448-14878467 | None:intergenic | 35.0% |
| ACCGCAAATTTCACTCTAAA+CGG | - | chr1_4:14878738-14878757 | Msa0152280:intron | 35.0% | |
| ! | TCCGTTTAGAGTGAAATTTG+CGG | + | chr1_4:14878742-14878761 | None:intergenic | 35.0% |
| !! | TGCTCAAGGAAGTACTTAAT+TGG | + | chr1_4:14878860-14878879 | None:intergenic | 35.0% |
| CAACAGAGATAGGTATAATG+GGG | + | chr1_4:14878913-14878932 | None:intergenic | 35.0% | |
| CTCAACAGAGATAGGTATAA+TGG | + | chr1_4:14878915-14878934 | None:intergenic | 35.0% | |
| CATTATACCTATCTCTGTTG+AGG | - | chr1_4:14878913-14878932 | Msa0152280:intron | 35.0% | |
| ATGTTCTTACTCAATAGGAG+GGG | + | chr1_4:14879120-14879139 | None:intergenic | 35.0% | |
| CTATGTTCTTACTCAATAGG+AGG | + | chr1_4:14879122-14879141 | None:intergenic | 35.0% | |
| AAACTTATATCAGGCTTCCT+TGG | - | chr1_4:14879194-14879213 | Msa0152280:intron | 35.0% | |
| AACTTATATCAGGCTTCCTT+GGG | - | chr1_4:14879195-14879214 | Msa0152280:intron | 35.0% | |
| ! | AACTTTTACAAGCAATCCCA+AGG | + | chr1_4:14879214-14879233 | None:intergenic | 35.0% |
| ! | TTTTACAGTTGTACACGTGT+AGG | - | chr1_4:14879238-14879257 | Msa0152280:intron | 35.0% |
| CTATATAGCACGGTAAATTC+TGG | - | chr1_4:14879387-14879406 | Msa0152280:intron | 35.0% | |
| TATCTGCTGCACAAGTAATT+TGG | - | chr1_4:14879429-14879448 | Msa0152280:intron | 35.0% | |
| ! | GTATACAGCACGAGAAATTT+TGG | - | chr1_4:14879734-14879753 | Msa0152280:intron | 35.0% |
| TATTACTGTGCATCAATGTG+TGG | - | chr1_4:14879820-14879839 | Msa0152280:intron | 35.0% | |
| !! | TTTTGGAAAACCACGTCATT+TGG | - | chr1_4:14879598-14879617 | Msa0152280:intron | 35.0% |
| ACAGATAATACCAAATGACG+TGG | + | chr1_4:14879917-14879936 | None:intergenic | 35.0% | |
| GAGAAAGAATTTAACACAGG+AGG | + | chr1_4:14880179-14880198 | None:intergenic | 35.0% | |
| TCGGAGAAAGAATTTAACAC+AGG | + | chr1_4:14880182-14880201 | None:intergenic | 35.0% | |
| AATAACGAACTCTGCTATCT+TGG | + | chr1_4:14880205-14880224 | None:intergenic | 35.0% | |
| !! | GTGAATTGTGTTTTGTTGCT+AGG | - | chr1_4:14880319-14880338 | Msa0152280:intron | 35.0% |
| !! | AGGACTTTTAAAAGGCTTGT+TGG | + | chr1_4:14880487-14880506 | None:intergenic | 35.0% |
| ! | ACGCATGTAGGACTTTTAAA+AGG | + | chr1_4:14880495-14880514 | None:intergenic | 35.0% |
| TTTGATGTATGAACGCATGT+AGG | + | chr1_4:14880507-14880526 | None:intergenic | 35.0% | |
| !! | CAAAGAGACTTGTTGATATG+TGG | - | chr1_4:14880693-14880712 | Msa0152280:intron | 35.0% |
| TATCAAGAAATGAAAGCAGG+GGG | + | chr1_4:14880750-14880769 | None:intergenic | 35.0% | |
| TAATCCATCCTACCAAAAAC+TGG | + | chr1_4:14880838-14880857 | None:intergenic | 35.0% | |
| TGTTCCAGATATTGATATGC+TGG | - | chr1_4:14880871-14880890 | Msa0152280:intron | 35.0% | |
| GTTCCAGATATTGATATGCT+GGG | - | chr1_4:14880872-14880891 | Msa0152280:intron | 35.0% | |
| AAACCCAGCATATCAATATC+TGG | + | chr1_4:14880878-14880897 | None:intergenic | 35.0% | |
| !! | CAGCAATTATCCACTTTTGT+AGG | - | chr1_4:14881222-14881241 | Msa0152280:intron | 35.0% |
| TTTGTAGGTTTCCCATGTTA+AGG | - | chr1_4:14881237-14881256 | Msa0152280:intron | 35.0% | |
| CTCTTGAAGTCTGTAGATTA+TGG | - | chr1_4:14881409-14881428 | Msa0152280:intron | 35.0% | |
| GTTCTCCAGATGAATTTACT+AGG | - | chr1_4:14881464-14881483 | Msa0152280:intron | 35.0% | |
| TAGGTTAACAGCTATCACAT+GGG | - | chr1_4:14881483-14881502 | Msa0152280:intron | 35.0% | |
| AATGAGTTTGTCAAACTTGG+TGG | - | chr1_4:14881653-14881672 | Msa0152280:intron | 35.0% | |
| ATCAGATATGCAAGGCAAAA+TGG | + | chr1_4:14881717-14881736 | None:intergenic | 35.0% | |
| GAAGAGAAAATTAGAGTGGT+AGG | - | chr1_4:14881740-14881759 | Msa0152280:CDS | 35.0% | |
| ! | TTCTCGCAATCATTTTACAG+TGG | + | chr1_4:14882095-14882114 | None:intergenic | 35.0% |
| CAATACGATGTCTGTTTAAC+AGG | + | chr1_4:14882250-14882269 | None:intergenic | 35.0% | |
| GTTAAACAGACATCGTATTG+AGG | - | chr1_4:14882250-14882269 | Msa0152280:five_prime_UTR | 35.0% | |
| ACTGTTGAGCTGGAAAAAAG+AGG | + | chr1_4:14876960-14876979 | None:intergenic | 40.0% | |
| ! | TTTCTGAGAAACTGTTGAGC+TGG | + | chr1_4:14876970-14876989 | None:intergenic | 40.0% |
| ! | TGTATTGGTATGATGAAGGG+AGG | - | chr1_4:14877867-14877886 | Msa0152280:intron | 40.0% |
| ! | GTATTGGTATGATGAAGGGA+GGG | - | chr1_4:14877868-14877887 | Msa0152280:intron | 40.0% |
| AGCTTCATTAGTCAACCCAA+CGG | + | chr1_4:14877916-14877935 | None:intergenic | 40.0% | |
| TATGCGTGCTTGTTTGTGAT+GGG | - | chr1_4:14878003-14878022 | Msa0152280:intron | 40.0% | |
| ! | GTGATGGGATATGCTTCATA+TGG | - | chr1_4:14878018-14878037 | Msa0152280:intron | 40.0% |
| !! | ATAGTGGACATTGGATCTTC+TGG | - | chr1_4:14878118-14878137 | Msa0152280:intron | 40.0% |
| ! | AGAATGCTATTTAAGCGCTC+AGG | + | chr1_4:14878211-14878230 | None:intergenic | 40.0% |
| CTGAACTTCAGCATTCAAGA+GGG | + | chr1_4:14878337-14878356 | None:intergenic | 40.0% | |
| TAGTTAGAGCCTATGATGCA+TGG | - | chr1_4:14878470-14878489 | Msa0152280:CDS | 40.0% | |
| AGTTAGAGCCTATGATGCAT+GGG | - | chr1_4:14878471-14878490 | Msa0152280:CDS | 40.0% | |
| TAAACGGAATGCGAGAGATA+AGG | - | chr1_4:14878754-14878773 | Msa0152280:intron | 40.0% | |
| TTTGTTCTACGCTGAAGCAT+GGG | + | chr1_4:14878836-14878855 | None:intergenic | 40.0% | |
| ATTTGTTCTACGCTGAAGCA+TGG | + | chr1_4:14878837-14878856 | None:intergenic | 40.0% | |
| ! | AGACAATGCAAAAGTGCAGT+TGG | + | chr1_4:14879369-14879388 | None:intergenic | 40.0% |
| AGCAGATAATGCTAATGACG+TGG | + | chr1_4:14879417-14879436 | None:intergenic | 40.0% | |
| ! | AGACAATGCAAAAGTGCAGT+TGG | + | chr1_4:14879369-14879388 | None:intergenic | 40.0% |
| TATTATTCTGGGTCAATGCG+TGG | - | chr1_4:14879667-14879686 | Msa0152280:intron | 40.0% | |
| ! | ACACAATGCAAAAGTGCAGT+TGG | + | chr1_4:14879716-14879735 | None:intergenic | 40.0% |
| ! | AGACAATGCAAAAGTGCAGT+TGG | + | chr1_4:14879369-14879388 | None:intergenic | 40.0% |
| ! | TTTTGTTGCTAGGTTGTGAG+AGG | - | chr1_4:14880329-14880348 | Msa0152280:intron | 40.0% |
| ! | TGCATAAGGCATCAAAGATC+TGG | + | chr1_4:14880376-14880395 | None:intergenic | 40.0% |
| ATCTGCAGAAAGCTTGCATA+AGG | + | chr1_4:14880390-14880409 | None:intergenic | 40.0% | |
| ATGTGCAGCACTTTGTACAT+TGG | + | chr1_4:14880420-14880439 | None:intergenic | 40.0% | |
| !! | TAAAAGGCTTGTTGGAGTTC+AGG | + | chr1_4:14880479-14880498 | None:intergenic | 40.0% |
| ATCAAGAAATGAAAGCAGGG+GGG | + | chr1_4:14880749-14880768 | None:intergenic | 40.0% | |
| !! | GGTAGGATGGATTACTGTAT+TGG | - | chr1_4:14880844-14880863 | Msa0152280:intron | 40.0% |
| CACTCACCATCAAGAAAATC+AGG | + | chr1_4:14880905-14880924 | None:intergenic | 40.0% | |
| ! | TTTTTCCCCTGTTAACTCAC+TGG | - | chr1_4:14881185-14881204 | Msa0152280:intron | 40.0% |
| ! | TTTTCCCCTGTTAACTCACT+GGG | - | chr1_4:14881186-14881205 | Msa0152280:intron | 40.0% |
| ACATGGGAAACCTACAAAAG+TGG | + | chr1_4:14881235-14881254 | None:intergenic | 40.0% | |
| GTCTGTAGATTATGGTCGAA+TGG | - | chr1_4:14881417-14881436 | Msa0152280:intron | 40.0% | |
| CTAGGTTAACAGCTATCACA+TGG | - | chr1_4:14881482-14881501 | Msa0152280:intron | 40.0% | |
| ! | ATCAGTGTTTTGCTTAGCGT+TGG | - | chr1_4:14881553-14881572 | Msa0152280:intron | 40.0% |
| CCAAGAATGTCAGCATAGTA+TGG | + | chr1_4:14881692-14881711 | None:intergenic | 40.0% | |
| CCATACTATGCTGACATTCT+TGG | - | chr1_4:14881689-14881708 | Msa0152280:intron | 40.0% | |
| !!! | TCCCATATTTTAGTGTTGCC+TGG | - | chr1_4:14881817-14881836 | Msa0152280:intron | 40.0% |
| GCCAGGCAACACTAAAATAT+GGG | + | chr1_4:14881821-14881840 | None:intergenic | 40.0% | |
| TGCCAGGCAACACTAAAATA+TGG | + | chr1_4:14881822-14881841 | None:intergenic | 40.0% | |
| GGCTTATTTGTAAGGTTGCT+CGG | - | chr1_4:14881891-14881910 | Msa0152280:CDS | 40.0% | |
| GCTTATTTGTAAGGTTGCTC+GGG | - | chr1_4:14881892-14881911 | Msa0152280:CDS | 40.0% | |
| ATCAAAAGCTTCAGCTGGAT+CGG | + | chr1_4:14881948-14881967 | None:intergenic | 40.0% | |
| AAAACTACACCTCCTTGCAA+TGG | + | chr1_4:14881987-14882006 | None:intergenic | 40.0% | |
| ! | GAGGTGTAGTTTTCTAACCT+TGG | - | chr1_4:14881994-14882013 | Msa0152280:five_prime_UTR | 40.0% |
| TTCTAACCTTGGAAAAAGGC+TGG | - | chr1_4:14882005-14882024 | Msa0152280:five_prime_UTR | 40.0% | |
| TCTAACCTTGGAAAAAGGCT+GGG | - | chr1_4:14882006-14882025 | Msa0152280:five_prime_UTR | 40.0% | |
| !!! | CTGTGTACTGATTTTGGGAA+TGG | - | chr1_4:14882154-14882173 | Msa0152280:five_prime_UTR | 40.0% |
| !!! | GATTTTGGGAATGGTTTGCT+TGG | - | chr1_4:14882163-14882182 | Msa0152280:five_prime_UTR | 40.0% |
| TTAGGCAACTCTCTAGTGAA+TGG | - | chr1_4:14882186-14882205 | Msa0152280:five_prime_UTR | 40.0% | |
| TAGGCAACTCTCTAGTGAAT+GGG | - | chr1_4:14882187-14882206 | Msa0152280:five_prime_UTR | 40.0% | |
| TGCGGATTTCGTTTCGAGAA+TGG | + | chr1_4:14877193-14877212 | None:intergenic | 45.0% | |
| CTGCTCGAAACGAAACATTG+CGG | + | chr1_4:14877211-14877230 | None:intergenic | 45.0% | |
| AAAGCTTATCGGCGAGGTTA+CGG | + | chr1_4:14877350-14877369 | None:intergenic | 45.0% | |
| TTTCGTAAAGCTTATCGGCG+AGG | + | chr1_4:14877356-14877375 | None:intergenic | 45.0% | |
| !! | ATGATTTGCTTGCGGCGAAT+AGG | + | chr1_4:14877571-14877590 | None:intergenic | 45.0% |
| !! | ACCTTGCGATGATTTGCTTG+CGG | + | chr1_4:14877579-14877598 | None:intergenic | 45.0% |
| CTATGCGTGCTTGTTTGTGA+TGG | - | chr1_4:14878002-14878021 | Msa0152280:intron | 45.0% | |
| CCTGAACTTCAGCATTCAAG+AGG | + | chr1_4:14878338-14878357 | None:intergenic | 45.0% | |
| CCTCTTGAATGCTGAAGTTC+AGG | - | chr1_4:14878335-14878354 | Msa0152280:intron | 45.0% | |
| GACACATACCCATGCATCAT+AGG | + | chr1_4:14878482-14878501 | None:intergenic | 45.0% | |
| ATGATGCATGGGTATGTGTC+CGG | - | chr1_4:14878482-14878501 | Msa0152280:intron | 45.0% | |
| ATGTATCTTGTACCCCGTAC+CGG | + | chr1_4:14878504-14878523 | None:intergenic | 45.0% | |
| ATCTCACCCTCAACAGAGAT+AGG | + | chr1_4:14878923-14878942 | None:intergenic | 45.0% | |
| TCTGTTGAGGGTGAGATGAA+GGG | - | chr1_4:14878926-14878945 | Msa0152280:intron | 45.0% | |
| CACATGTTGTCACGCACATA+TGG | + | chr1_4:14880058-14880077 | None:intergenic | 45.0% | |
| ACGAACTCTGCTATCTTGGT+CGG | + | chr1_4:14880201-14880220 | None:intergenic | 45.0% | |
| !! | TCTCTTAGATCGACTCGTGA+AGG | - | chr1_4:14880439-14880458 | Msa0152280:intron | 45.0% |
| TGACCGAAAGTGATCAGTTC+AGG | - | chr1_4:14880617-14880636 | Msa0152280:intron | 45.0% | |
| GCACCTGAACTGATCACTTT+CGG | + | chr1_4:14880623-14880642 | None:intergenic | 45.0% | |
| TTCATGCGCTCCCTCAATAA+TGG | + | chr1_4:14880794-14880813 | None:intergenic | 45.0% | |
| ! | TCCATATGTCCGCCAGTTTT+TGG | - | chr1_4:14880823-14880842 | Msa0152280:intron | 45.0% |
| ! | ACCAAAAACTGGCGGACATA+TGG | + | chr1_4:14880827-14880846 | None:intergenic | 45.0% |
| !!! | TATGTCCGCCAGTTTTTGGT+AGG | - | chr1_4:14880827-14880846 | Msa0152280:intron | 45.0% |
| TCCATCCTACCAAAAACTGG+CGG | + | chr1_4:14880835-14880854 | None:intergenic | 45.0% | |
| TTTCCCCTGTTAACTCACTG+GGG | - | chr1_4:14881187-14881206 | Msa0152280:intron | 45.0% | |
| TCTTCCCCAGTGAGTTAACA+GGG | + | chr1_4:14881194-14881213 | None:intergenic | 45.0% | |
| ATCTTCCCCAGTGAGTTAAC+AGG | + | chr1_4:14881195-14881214 | None:intergenic | 45.0% | |
| TGGTCGAATGGCTGAAATTC+TGG | - | chr1_4:14881429-14881448 | Msa0152280:intron | 45.0% | |
| TGGCTGAAATTCTGGTACAG+AGG | - | chr1_4:14881437-14881456 | Msa0152280:intron | 45.0% | |
| GGCTGAAATTCTGGTACAGA+GGG | - | chr1_4:14881438-14881457 | Msa0152280:intron | 45.0% | |
| ACAGCTATCACATGGGTAAG+TGG | - | chr1_4:14881490-14881509 | Msa0152280:intron | 45.0% | |
| CAGCATAGTATGGAACAAGC+TGG | + | chr1_4:14881682-14881701 | None:intergenic | 45.0% | |
| TGTACTGAGTTGTACATGCC+AGG | + | chr1_4:14881838-14881857 | None:intergenic | 45.0% | |
| GATTGCTCGTAGCTCTTCAT+TGG | + | chr1_4:14881921-14881940 | None:intergenic | 45.0% | |
| CCTACATCAAAAGCTTCAGC+TGG | + | chr1_4:14881953-14881972 | None:intergenic | 45.0% | |
| ! | CCAGCTGAAGCTTTTGATGT+AGG | - | chr1_4:14881950-14881969 | Msa0152280:exon | 45.0% |
| ! | TCAAACCCAGCCTTTTTCCA+AGG | + | chr1_4:14882014-14882033 | None:intergenic | 45.0% |
| TACAGTGGTGAGCAATAGTC+AGG | - | chr1_4:14882069-14882088 | Msa0152280:five_prime_UTR | 45.0% | |
| !! | TGGGAATGGTTTGCTTGGTT+AGG | - | chr1_4:14882168-14882187 | Msa0152280:five_prime_UTR | 45.0% |
| CTCGAATCGAAGCTTTGCAT+TGG | - | chr1_4:14882216-14882235 | Msa0152280:five_prime_UTR | 45.0% | |
| !! | AAGATAATTAATAATAATTA+CGG | + | chr1_4:14877015-14877034 | None:intergenic | 5.0% |
| !! | ATAAAAATAAAAAAATATGT+AGG | + | chr1_4:14880145-14880164 | None:intergenic | 5.0% |
| CGCAATGTTTCGTTTCGAGC+AGG | - | chr1_4:14877209-14877228 | Msa0152280:intron | 50.0% | |
| ! | AGAGCATCCGCCATTGAAAC+AGG | + | chr1_4:14877303-14877322 | None:intergenic | 50.0% |
| ACGCAAAAATGCTGCACTCG+AGG | - | chr1_4:14877377-14877396 | Msa0152280:intron | 50.0% | |
| AGTTTAGCTGCTGCTACCGT+TGG | - | chr1_4:14877897-14877916 | Msa0152280:intron | 50.0% | |
| GTTTAGCTGCTGCTACCGTT+GGG | - | chr1_4:14877898-14877917 | Msa0152280:intron | 50.0% | |
| ! | CAGAGAGGGGTTGATTGCAA+AGG | + | chr1_4:14878390-14878409 | None:intergenic | 50.0% |
| GATAAGGAGTCCCACAGGTA+CGG | - | chr1_4:14878770-14878789 | Msa0152280:intron | 50.0% | |
| AGTATGCCTACCGTACCTGT+GGG | + | chr1_4:14878783-14878802 | None:intergenic | 50.0% | |
| ACAGGTACGGTAGGCATACT+CGG | - | chr1_4:14878783-14878802 | Msa0152280:intron | 50.0% | |
| TACGGTAGGCATACTCGGTA+CGG | - | chr1_4:14878788-14878807 | Msa0152280:intron | 50.0% | |
| ATCCCATACCAGTCGATGTG+AGG | - | chr1_4:14878879-14878898 | Msa0152280:CDS | 50.0% | |
| ! | AGCCTCACATCGACTGGTAT+GGG | + | chr1_4:14878884-14878903 | None:intergenic | 50.0% |
| ! | AAGCCTCACATCGACTGGTA+TGG | + | chr1_4:14878885-14878904 | None:intergenic | 50.0% |
| TACCAGTCGATGTGAGGCTT+AGG | - | chr1_4:14878885-14878904 | Msa0152280:CDS | 50.0% | |
| CTCTGTTGAGGGTGAGATGA+AGG | - | chr1_4:14878925-14878944 | Msa0152280:intron | 50.0% | |
| !!! | TCCGCCAGTTTTTGGTAGGA+TGG | - | chr1_4:14880831-14880850 | Msa0152280:intron | 50.0% |
| CTTCCCCAGTGAGTTAACAG+GGG | + | chr1_4:14881193-14881212 | None:intergenic | 50.0% | |
| GAAATTCTGGTACAGAGGGC+TGG | - | chr1_4:14881442-14881461 | Msa0152280:intron | 50.0% | |
| GAGCAATCCTCTCCATTGCA+AGG | - | chr1_4:14881972-14881991 | Msa0152280:five_prime_UTR | 50.0% | |
| CAATCCTCTCCATTGCAAGG+AGG | - | chr1_4:14881975-14881994 | Msa0152280:five_prime_UTR | 50.0% | |
| TACACCTCCTTGCAATGGAG+AGG | + | chr1_4:14881982-14882001 | None:intergenic | 50.0% | |
| GCAACTCTCTAGTGAATGGG+AGG | - | chr1_4:14882190-14882209 | Msa0152280:five_prime_UTR | 50.0% | |
| GGATGCTCTCACTGTCATGC+CGG | - | chr1_4:14877314-14877333 | Msa0152280:CDS | 55.0% | |
| ! | GTGAAGCAGCTTGCTTCTGC+TGG | - | chr1_4:14877495-14877514 | Msa0152280:intron | 55.0% |
| GCCGCAAGCAAATCATCGCA+AGG | - | chr1_4:14877575-14877594 | Msa0152280:CDS | 55.0% | |
| TGAAGCTGCTCAGCATCTCG+AGG | - | chr1_4:14877929-14877948 | Msa0152280:intron | 55.0% | |
| TGCTCAGCATCTCGAGGTGA+GGG | - | chr1_4:14877935-14877954 | Msa0152280:intron | 55.0% | |
| GCATGGGTATGTGTCCGGTA+CGG | - | chr1_4:14878487-14878506 | Msa0152280:intron | 55.0% | |
| CATGGGTATGTGTCCGGTAC+GGG | - | chr1_4:14878488-14878507 | Msa0152280:intron | 55.0% | |
| ATGGGTATGTGTCCGGTACG+GGG | - | chr1_4:14878489-14878508 | Msa0152280:intron | 55.0% | |
| CGAGAGATAAGGAGTCCCAC+AGG | - | chr1_4:14878765-14878784 | Msa0152280:intron | 55.0% | |
| GAGTATGCCTACCGTACCTG+TGG | + | chr1_4:14878784-14878803 | None:intergenic | 55.0% | |
| ACGGTAGGCATACTCGGTAC+GGG | - | chr1_4:14878789-14878808 | Msa0152280:intron | 55.0% | |
| CGACTGGTATGGGATGCTCA+AGG | + | chr1_4:14878874-14878893 | None:intergenic | 55.0% | |
| TGCCTAAGCCTCACATCGAC+TGG | + | chr1_4:14878890-14878909 | None:intergenic | 55.0% | |
| ATCGGCGAGGTTACGGAGCA+CGG | + | chr1_4:14877343-14877362 | None:intergenic | 60.0% | |
| CTGCTCAGCATCTCGAGGTG+AGG | - | chr1_4:14877934-14877953 | Msa0152280:intron | 60.0% | |
| AGGAGTCCCACAGGTACGGT+AGG | - | chr1_4:14878774-14878793 | Msa0152280:intron | 60.0% | |
| AGGTTACGGAGCACGGCGGC+CGG | + | chr1_4:14877336-14877355 | None:intergenic | 70.0% | |
| GGCGAGGTTACGGAGCACGG+CGG | + | chr1_4:14877340-14877359 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14876957 | 14882310 | 14876957 | ID=Msa0152280;Name=Msa0152280 |
| chr1_4 | mRNA | 14876957 | 14882310 | 14876957 | ID=Msa0152280-mRNA-1;Parent=Msa0152280;Name=Msa0152280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=352|0.72|0.66|1|0.81|0.75|12|0|365 |
| chr1_4 | exon | 14876957 | 14877077 | 14876957 | ID=Msa0152280-mRNA-1:exon:5849;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14877271 | 14877362 | 14877271 | ID=Msa0152280-mRNA-1:exon:5848;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14877510 | 14877617 | 14877510 | ID=Msa0152280-mRNA-1:exon:5847;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14877763 | 14877849 | 14877763 | ID=Msa0152280-mRNA-1:exon:5846;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14878168 | 14878262 | 14878168 | ID=Msa0152280-mRNA-1:exon:5845;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14878350 | 14878492 | 14878350 | ID=Msa0152280-mRNA-1:exon:5844;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14878629 | 14878657 | 14878629 | ID=Msa0152280-mRNA-1:exon:5843;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14878807 | 14878926 | 14878807 | ID=Msa0152280-mRNA-1:exon:5842;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14879011 | 14879100 | 14879011 | ID=Msa0152280-mRNA-1:exon:5841;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14881317 | 14881382 | 14881317 | ID=Msa0152280-mRNA-1:exon:5840;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14881728 | 14881784 | 14881728 | ID=Msa0152280-mRNA-1:exon:5839;Parent=Msa0152280-mRNA-1 |
| chr1_4 | exon | 14881869 | 14882310 | 14881869 | ID=Msa0152280-mRNA-1:exon:5838;Parent=Msa0152280-mRNA-1 |
| chr1_4 | five_prime_UTR | 14881959 | 14882310 | 14881959 | ID=Msa0152280-mRNA-1:five_prime_utr;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14881869 | 14881958 | 14881869 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14881728 | 14881784 | 14881728 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14881317 | 14881382 | 14881317 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14879011 | 14879100 | 14879011 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14878807 | 14878926 | 14878807 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14878629 | 14878657 | 14878629 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14878350 | 14878492 | 14878350 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14878168 | 14878262 | 14878168 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14877763 | 14877849 | 14877763 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14877510 | 14877617 | 14877510 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14877271 | 14877362 | 14877271 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| chr1_4 | CDS | 14876957 | 14877077 | 14876957 | ID=Msa0152280-mRNA-1:cds;Parent=Msa0152280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
