Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152520 | sp|Q9LFD5|BPA1_ARATH | 53.846 | 234 | 99 | 4 | 29 | 259 | 3 | 230 | 2.82e-75 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152520 | A0A072VFR7 | 97.428 | 311 | 8 | 0 | 1 | 311 | 1 | 311 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0152520 | Msa1206230 | 0.802357 | 5.828543e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152520 | MtrunA17_Chr1g0161591 | 97.428 | 311 | 8 | 0 | 1 | 311 | 1 | 311 | 0.0 | 613 |
| Msa0152520 | MtrunA17_Chr8g0392141 | 67.638 | 309 | 98 | 2 | 1 | 307 | 1 | 309 | 3.65e-146 | 413 |
| Msa0152520 | MtrunA17_Chr8g0366351 | 55.985 | 259 | 102 | 3 | 30 | 283 | 2 | 253 | 2.70e-95 | 283 |
| Msa0152520 | MtrunA17_Chr5g0410831 | 56.757 | 259 | 100 | 3 | 30 | 283 | 2 | 253 | 2.89e-95 | 283 |
| Msa0152520 | MtrunA17_Chr7g0253621 | 41.365 | 249 | 127 | 2 | 32 | 261 | 4 | 252 | 3.21e-61 | 196 |
| Msa0152520 | MtrunA17_Chr5g0410821 | 56.081 | 148 | 58 | 1 | 136 | 283 | 1 | 141 | 1.17e-49 | 162 |
| Msa0152520 | MtrunA17_Chr5g0416421 | 34.979 | 243 | 134 | 3 | 28 | 250 | 4 | 242 | 5.00e-41 | 143 |
| Msa0152520 | MtrunA17_Chr7g0217131 | 34.263 | 251 | 124 | 5 | 33 | 250 | 7 | 249 | 2.18e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152520 | AT1G67950.3 | 54.212 | 273 | 102 | 3 | 28 | 298 | 25 | 276 | 8.54e-95 | 282 |
| Msa0152520 | AT1G67950.1 | 54.412 | 272 | 102 | 3 | 28 | 298 | 25 | 275 | 1.57e-94 | 281 |
| Msa0152520 | AT1G67950.2 | 54.412 | 272 | 102 | 3 | 28 | 298 | 26 | 276 | 2.25e-94 | 281 |
| Msa0152520 | AT4G17720.1 | 56.981 | 265 | 96 | 4 | 33 | 288 | 5 | 260 | 3.41e-94 | 282 |
| Msa0152520 | AT5G46870.2 | 57.384 | 237 | 90 | 1 | 33 | 258 | 5 | 241 | 3.20e-89 | 268 |
| Msa0152520 | AT5G46870.1 | 57.384 | 237 | 90 | 1 | 33 | 258 | 5 | 241 | 3.20e-89 | 268 |
| Msa0152520 | AT5G16840.2 | 53.846 | 234 | 100 | 4 | 29 | 259 | 3 | 231 | 3.80e-77 | 236 |
| Msa0152520 | AT5G16840.1 | 53.846 | 234 | 99 | 4 | 29 | 259 | 3 | 230 | 2.87e-76 | 234 |
| Msa0152520 | AT5G16840.3 | 53.879 | 232 | 98 | 4 | 31 | 259 | 3 | 228 | 7.55e-76 | 233 |
| Msa0152520 | AT1G67950.4 | 51.899 | 237 | 92 | 3 | 63 | 298 | 1 | 216 | 8.66e-73 | 224 |
| Msa0152520 | AT5G32450.1 | 42.400 | 250 | 124 | 3 | 32 | 261 | 5 | 254 | 2.78e-62 | 199 |
| Msa0152520 | AT1G14340.1 | 36.170 | 235 | 130 | 2 | 34 | 252 | 9 | 239 | 1.84e-39 | 139 |
| Msa0152520 | AT3G01210.2 | 30.901 | 233 | 126 | 5 | 35 | 240 | 9 | 233 | 2.41e-26 | 104 |
| Msa0152520 | AT3G01210.1 | 30.901 | 233 | 126 | 5 | 35 | 240 | 9 | 233 | 2.41e-26 | 104 |
Find 78 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTTAAAACCCCTTTAA+AGG | 0.168463 | 1_4:+15225641 | None:intergenic |
| TCCTCGTGTCATACCTTTAA+AGG | 0.171790 | 1_4:-15225654 | Msa0152520:three_prime_UTR |
| GCTTCTATTGATAATAAAAT+TGG | 0.199716 | 1_4:-15226326 | Msa0152520:CDS |
| GGACTTGAGGGAAGTGCTTC+AGG | 0.208060 | 1_4:+15227128 | None:intergenic |
| GAAACATGAACGGTCCAATT+TGG | 0.261534 | 1_4:+15228139 | None:intergenic |
| TTGAACAATTGGAATTTGAT+AGG | 0.289874 | 1_4:+15229719 | None:intergenic |
| GCTCCACAGCTACACCAAAT+TGG | 0.315541 | 1_4:-15228153 | Msa0152520:CDS |
| TTAATATAGGGTTCTAAGAT+AGG | 0.315670 | 1_4:-15227197 | Msa0152520:intron |
| CCTCGTGTCATACCTTTAAA+GGG | 0.350156 | 1_4:-15225653 | Msa0152520:three_prime_UTR |
| CTTCAGCTCTTTGATCAGTA+TGG | 0.405023 | 1_4:+15228185 | None:intergenic |
| AACTTTGAGGACTCTTTAAA+CGG | 0.410295 | 1_4:-15225981 | Msa0152520:CDS |
| ACGTCTTAACCGGAGCTTCA+TGG | 0.420415 | 1_4:-15226148 | Msa0152520:CDS |
| AGTTGCCTATGTTACCTTCA+AGG | 0.423242 | 1_4:-15227361 | Msa0152520:CDS |
| TGAACAATTGGAATTTGATA+GGG | 0.424123 | 1_4:+15229720 | None:intergenic |
| AGCAATTCTTACGTCTTAAC+CGG | 0.425746 | 1_4:-15226158 | Msa0152520:CDS |
| TGCTCCCTGTGAATCCTTGA+AGG | 0.427846 | 1_4:+15227347 | None:intergenic |
| GACTTGAGGGAAGTGCTTCA+GGG | 0.436600 | 1_4:+15227129 | None:intergenic |
| TGATAGAAAATAACAAAGAA+TGG | 0.436826 | 1_4:+15225712 | None:intergenic |
| GAATTCTTCAATGTCTTGCT+TGG | 0.438046 | 1_4:+15227542 | None:intergenic |
| CACAGCTGGATTGACCTTGT+TGG | 0.443545 | 1_4:-15225862 | Msa0152520:three_prime_UTR |
| GAGCAAAAGGCAAGTAGTGC+TGG | 0.446686 | 1_4:-15226194 | Msa0152520:CDS |
| ATTTGGTGTAGCTGTGGAGC+AGG | 0.451544 | 1_4:+15228156 | None:intergenic |
| ATCATTTACAGTGAAAGAAA+AGG | 0.454679 | 1_4:-15226029 | Msa0152520:CDS |
| TAGGTACTTACTGGACTTGA+GGG | 0.458555 | 1_4:+15227116 | None:intergenic |
| CAATTGAAGACGTTCATCAA+TGG | 0.466249 | 1_4:+15226373 | None:intergenic |
| TCTTAACTGCATCAGCACTT+TGG | 0.473425 | 1_4:+15226471 | None:intergenic |
| AACATCCTTAAAAGCACAGC+TGG | 0.474196 | 1_4:-15225876 | Msa0152520:three_prime_UTR |
| TTAAGTGATAAACTAAGTAT+TGG | 0.480617 | 1_4:-15226302 | Msa0152520:CDS |
| AACTGCGGAAGAAGCATTAG+AGG | 0.483050 | 1_4:+15226349 | None:intergenic |
| CTTTCCTAAAATGAAACCCT+TGG | 0.484629 | 1_4:+15226418 | None:intergenic |
| ATATGCTCAGATGAACTTTG+AGG | 0.486324 | 1_4:-15225994 | Msa0152520:CDS |
| CACAACCATTGTCAATGAAA+AGG | 0.490292 | 1_4:-15226279 | Msa0152520:CDS |
| GAACTAACAGGAACTACTGC+AGG | 0.495119 | 1_4:+15225954 | None:intergenic |
| TGTTACCTTCAAGGATTCAC+AGG | 0.500014 | 1_4:-15227352 | Msa0152520:CDS |
| TCCGAAAATGACAGTAAAGC+TGG | 0.503764 | 1_4:-15225933 | Msa0152520:CDS |
| TGCGTTTAGCGTTGTTGCAA+AGG | 0.508406 | 1_4:-15226117 | Msa0152520:CDS |
| GGAAGTTGGTACTGCTCCAC+AGG | 0.510179 | 1_4:+15227152 | None:intergenic |
| GATAGAAAATAACAAAGAAT+GGG | 0.510585 | 1_4:+15225713 | None:intergenic |
| TATTGCTGTTGCTGAGCAAA+AGG | 0.512370 | 1_4:-15226207 | Msa0152520:CDS |
| GAACAATTGGAATTTGATAG+GGG | 0.512466 | 1_4:+15229721 | None:intergenic |
| AGAGACAGCAGTTCTCTTGA+CGG | 0.514584 | 1_4:-15227325 | Msa0152520:intron |
| AATGAAACCCTTGGCAAGCA+TGG | 0.519935 | 1_4:+15226427 | None:intergenic |
| AGCTTGTTCAACCTTCTCCA+TGG | 0.525835 | 1_4:+15226070 | None:intergenic |
| TGTTTATGAATCATATCTGT+AGG | 0.535572 | 1_4:+15225755 | None:intergenic |
| TGATTGTTATAGCGATGTAA+AGG | 0.540881 | 1_4:-15225783 | Msa0152520:three_prime_UTR |
| ACTCGACAGCCATGAAGCTC+CGG | 0.541588 | 1_4:+15226139 | None:intergenic |
| TTAGGTACTTACTGGACTTG+AGG | 0.546841 | 1_4:+15227115 | None:intergenic |
| TCATTTACAGTGAAAGAAAA+GGG | 0.548222 | 1_4:-15226028 | Msa0152520:CDS |
| CGTTGTTGCAAAGGCAGCTG+AGG | 0.550072 | 1_4:-15226108 | Msa0152520:CDS |
| TGTAGCTGTGGAGCAGGGAA+TGG | 0.560070 | 1_4:+15228162 | None:intergenic |
| TGAATCCTTGAAGGTAACAT+AGG | 0.561740 | 1_4:+15227356 | None:intergenic |
| TTCAATATATTGAGATGCAA+AGG | 0.567772 | 1_4:-15227500 | Msa0152520:intron |
| AATAAGTACCATGCTTGCCA+AGG | 0.569753 | 1_4:-15226435 | Msa0152520:CDS |
| ACTTGAGGGAAGTGCTTCAG+GGG | 0.569844 | 1_4:+15227130 | None:intergenic |
| AGGTGAAAGAGATGGATGAA+AGG | 0.582201 | 1_4:-15226259 | Msa0152520:CDS |
| GAAGGTTGAACAAGCTGAGG+TGG | 0.587721 | 1_4:-15226063 | Msa0152520:CDS |
| CAGCACGATGACCATGGAGA+AGG | 0.588901 | 1_4:-15226081 | Msa0152520:CDS |
| GGATGTCAGCACGATGACCA+TGG | 0.589946 | 1_4:-15226087 | Msa0152520:CDS |
| CAATGAAAAGGTGAAAGAGA+TGG | 0.594437 | 1_4:-15226267 | Msa0152520:CDS |
| CTCGTGTCATACCTTTAAAG+GGG | 0.595762 | 1_4:-15225652 | Msa0152520:three_prime_UTR |
| ATAAGTACCATGCTTGCCAA+GGG | 0.605633 | 1_4:-15226434 | Msa0152520:CDS |
| CAGGTGAGATGGTGACATAT+AGG | 0.608640 | 1_4:+15227171 | None:intergenic |
| AAGTGCTGATGCAGTTAAGA+CGG | 0.610368 | 1_4:-15226468 | Msa0152520:CDS |
| GTACTGCTCCACAGGTGAGA+TGG | 0.613387 | 1_4:+15227160 | None:intergenic |
| GGTCCAATTTGGTGTAGCTG+TGG | 0.621466 | 1_4:+15228150 | None:intergenic |
| GGAGAAGGTTGAACAAGCTG+AGG | 0.639161 | 1_4:-15226066 | Msa0152520:CDS |
| GTAAGAATTGCTCATGATAG+CGG | 0.640841 | 1_4:+15226169 | None:intergenic |
| TTTGGTGTAGCTGTGGAGCA+GGG | 0.645204 | 1_4:+15228157 | None:intergenic |
| CCCTTTAAAGGTATGACACG+AGG | 0.646695 | 1_4:+15225653 | None:intergenic |
| ACTCACATTTGAAACATGAA+CGG | 0.647372 | 1_4:+15228129 | None:intergenic |
| ATTATCAATAGAAGCAACTG+CGG | 0.652964 | 1_4:+15226334 | None:intergenic |
| ATATGTCACCATCTCACCTG+TGG | 0.654688 | 1_4:-15227168 | Msa0152520:CDS |
| AATCGTATCATCGAAAATGT+CGG | 0.655281 | 1_4:-15229657 | Msa0152520:intron |
| GTTACCTTCAAGGATTCACA+GGG | 0.662353 | 1_4:-15227351 | Msa0152520:CDS |
| AACTAACAGGAACTACTGCA+GGG | 0.663390 | 1_4:+15225955 | None:intergenic |
| CTTGAGGGAAGTGCTTCAGG+GGG | 0.674891 | 1_4:+15227131 | None:intergenic |
| TTTGAGGACTCTTTAAACGG+CGG | 0.688922 | 1_4:-15225978 | Msa0152520:CDS |
| TGAAAATAACTATTCCAACA+AGG | 0.690195 | 1_4:+15225848 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTATTCAATATTAT+AGG | - | chr1_4:15226705-15226724 | Msa0152520:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTGTTGAA+TGG | - | chr1_4:15225860-15225879 | Msa0152520:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTTGTGTTGAAT+GGG | - | chr1_4:15225861-15225880 | Msa0152520:three_prime_UTR | 15.0% |
| !!! | TAATGGATATTTTGTTATTT+GGG | - | chr1_4:15226168-15226187 | Msa0152520:CDS | 15.0% |
| !!! | ATGATATTTTATGAGTAAAT+AGG | + | chr1_4:15227058-15227077 | None:intergenic | 15.0% |
| !!! | TATTCTTCGATTTTTAATAT+AGG | - | chr1_4:15228099-15228118 | Msa0152520:intron | 15.0% |
| !!! | ATTCTTCGATTTTTAATATA+GGG | - | chr1_4:15228100-15228119 | Msa0152520:intron | 15.0% |
| !! | AAATTCAATTAATAACTAGA+TGG | - | chr1_4:15228454-15228473 | Msa0152520:intron | 15.0% |
| !! | AAATTCAATTAATAACTAGA+TGG | - | chr1_4:15228454-15228473 | Msa0152520:intron | 15.0% |
| !! | ATAATGATTCAAATCAATCA+AGG | + | chr1_4:15225913-15225932 | None:intergenic | 20.0% |
| !! | AAATTCAAAAGCAATACTTA+TGG | + | chr1_4:15225986-15226005 | None:intergenic | 20.0% |
| !!! | ATTTTTTGCTAATGAGTTTT+TGG | - | chr1_4:15226016-15226035 | Msa0152520:CDS | 20.0% |
| !! | ATCTAATAGAAATTGAAGTA+TGG | - | chr1_4:15226039-15226058 | Msa0152520:CDS | 20.0% |
| !!! | CTAATGGATATTTTGTTATT+TGG | - | chr1_4:15226167-15226186 | Msa0152520:CDS | 20.0% |
| !!! | TATGAGCTTTTATTTTTGAT+TGG | - | chr1_4:15226944-15226963 | Msa0152520:intron | 20.0% |
| !! | GCACAAAAAATGTTAAATTA+AGG | + | chr1_4:15227091-15227110 | None:intergenic | 20.0% |
| !!! | TAATTTAACATTTTTTGTGC+AGG | - | chr1_4:15227091-15227110 | Msa0152520:intron | 20.0% |
| !! | TGATAGATTACAATTAGTTA+GGG | - | chr1_4:15227338-15227357 | Msa0152520:CDS | 20.0% |
| !! | AGAATCTTTATTAATTGTGA+GGG | + | chr1_4:15227452-15227471 | None:intergenic | 20.0% |
| !! | TAGAATCTTTATTAATTGTG+AGG | + | chr1_4:15227453-15227472 | None:intergenic | 20.0% |
| !! | TGTATAGATTCATATCATTA+AGG | - | chr1_4:15227474-15227493 | Msa0152520:intron | 20.0% |
| !!! | ATTTCAGATTTGTTTTTGTT+TGG | - | chr1_4:15227521-15227540 | Msa0152520:CDS | 20.0% |
| !! | TTATCTGTATGAAAAGAAAA+TGG | + | chr1_4:15227711-15227730 | None:intergenic | 20.0% |
| !! | AATATATTGTAAACTTTGAC+TGG | - | chr1_4:15228651-15228670 | Msa0152520:intron | 20.0% |
| !!! | GCTTCTATTGATAATAAAAT+TGG | - | chr1_4:15228983-15229002 | Msa0152520:intron | 20.0% |
| !! | TTAAGTGATAAACTAAGTAT+TGG | - | chr1_4:15229007-15229026 | Msa0152520:intron | 20.0% |
| !! | GATAGAAAATAACAAAGAAT+GGG | + | chr1_4:15229599-15229618 | None:intergenic | 20.0% |
| !! | TGATAGAAAATAACAAAGAA+TGG | + | chr1_4:15229600-15229619 | None:intergenic | 20.0% |
| ! | TGAACAATTGGAATTTGATA+GGG | + | chr1_4:15225592-15225611 | None:intergenic | 25.0% |
| ! | TTGAACAATTGGAATTTGAT+AGG | + | chr1_4:15225593-15225612 | None:intergenic | 25.0% |
| !!! | GTTGAATGAGTTTTTTCTAA+TGG | - | chr1_4:15226151-15226170 | Msa0152520:CDS | 25.0% |
| ! | ATTTGGGTAATGTTAATGAA+TGG | - | chr1_4:15226184-15226203 | Msa0152520:CDS | 25.0% |
| !! | TAAGTTACATTAGCTTGAAT+AGG | - | chr1_4:15226225-15226244 | Msa0152520:CDS | 25.0% |
| !! | AAGTGCATTTTATAGGAAAA+AGG | - | chr1_4:15226260-15226279 | Msa0152520:CDS | 25.0% |
| !! | AGTGCATTTTATAGGAAAAA+GGG | - | chr1_4:15226261-15226280 | Msa0152520:CDS | 25.0% |
| !!! | TACAAAGTGTTTTTGAATAC+CGG | - | chr1_4:15226378-15226397 | Msa0152520:CDS | 25.0% |
| ! | TTTCAAACTATGCTATTGTT+GGG | + | chr1_4:15226621-15226640 | None:intergenic | 25.0% |
| !! | TTTTCAAACTATGCTATTGT+TGG | + | chr1_4:15226622-15226641 | None:intergenic | 25.0% |
| ! | CTATTAATATGATAGAGTTC+CGG | + | chr1_4:15226837-15226856 | None:intergenic | 25.0% |
| !!! | TTTTTCAGAAAACAAACCAA+AGG | + | chr1_4:15226911-15226930 | None:intergenic | 25.0% |
| !! | ATTGGATTTTCACAACATTT+TGG | - | chr1_4:15226962-15226981 | Msa0152520:intron | 25.0% |
| !!! | TGTTAAATTAAGGTATTGCT+TGG | + | chr1_4:15227081-15227100 | None:intergenic | 25.0% |
| !! | GTTTTTGTAGATAGTTGAAT+TGG | - | chr1_4:15227201-15227220 | Msa0152520:intron | 25.0% |
| ! | TAATTGTAATTTACCTGATC+AGG | - | chr1_4:15227233-15227252 | Msa0152520:intron | 25.0% |
| ! | GTGATAGATTACAATTAGTT+AGG | - | chr1_4:15227337-15227356 | Msa0152520:CDS | 25.0% |
| ! | AATTAGTTAGGGAATTCAAA+TGG | - | chr1_4:15227349-15227368 | Msa0152520:CDS | 25.0% |
| ! | ATTAGTTAGGGAATTCAAAT+GGG | - | chr1_4:15227350-15227369 | Msa0152520:CDS | 25.0% |
| ! | ACTGAAAATCCAAAATCATT+TGG | - | chr1_4:15227405-15227424 | Msa0152520:intron | 25.0% |
| ! | AAATCCAAAATCATTTGGTT+TGG | - | chr1_4:15227410-15227429 | Msa0152520:intron | 25.0% |
| !!! | TTTTTGTTTGGAAGATAAGT+TGG | - | chr1_4:15227533-15227552 | Msa0152520:CDS | 25.0% |
| !!! | GCTAAAATTTTGGTTACTTT+TGG | - | chr1_4:15227564-15227583 | Msa0152520:CDS | 25.0% |
| ! | TACAACTAAAATATCAACAC+AGG | + | chr1_4:15227628-15227647 | None:intergenic | 25.0% |
| ! | TTCAATATATTGAGATGCAA+AGG | - | chr1_4:15227809-15227828 | Msa0152520:intron | 25.0% |
| ! | GTACAGTAAAATTTCAAATG+CGG | + | chr1_4:15228032-15228051 | None:intergenic | 25.0% |
| ! | TACTGTACATTTCATAGTAA+TGG | - | chr1_4:15228044-15228063 | Msa0152520:intron | 25.0% |
| ! | ACTGTACATTTCATAGTAAT+GGG | - | chr1_4:15228045-15228064 | Msa0152520:intron | 25.0% |
| ! | TAAGCACATGACTTAAAAAT+TGG | + | chr1_4:15228081-15228100 | None:intergenic | 25.0% |
| !!! | TTAATATAGGGTTCTAAGAT+AGG | - | chr1_4:15228112-15228131 | Msa0152520:intron | 25.0% |
| ! | TTGCATACACTAAATAAGAT+AGG | + | chr1_4:15228232-15228251 | None:intergenic | 25.0% |
| ! | TTATTTAGTGTATGCAATTG+AGG | - | chr1_4:15228235-15228254 | Msa0152520:intron | 25.0% |
| ! | GAAAATAACACAAACATGTT+CGG | + | chr1_4:15228331-15228350 | None:intergenic | 25.0% |
| !! | GAAAACGAAACTGATATTTT+GGG | + | chr1_4:15228353-15228372 | None:intergenic | 25.0% |
| !! | TGAAAACGAAACTGATATTT+TGG | + | chr1_4:15228354-15228373 | None:intergenic | 25.0% |
| ! | ATCATTTACAGTGAAAGAAA+AGG | - | chr1_4:15229280-15229299 | Msa0152520:intron | 25.0% |
| ! | TCATTTACAGTGAAAGAAAA+GGG | - | chr1_4:15229281-15229300 | Msa0152520:intron | 25.0% |
| ! | TGAAAATAACTATTCCAACA+AGG | + | chr1_4:15229464-15229483 | None:intergenic | 25.0% |
| ! | TGTTTATGAATCATATCTGT+AGG | + | chr1_4:15229557-15229576 | None:intergenic | 25.0% |
| GAACAATTGGAATTTGATAG+GGG | + | chr1_4:15225591-15225610 | None:intergenic | 30.0% | |
| !!! | AGGTGAGTTTTTTGAACAAT+TGG | + | chr1_4:15225604-15225623 | None:intergenic | 30.0% |
| ! | TGAATTTTTGTCACAACGAA+AGG | + | chr1_4:15225624-15225643 | None:intergenic | 30.0% |
| AATCGTATCATCGAAAATGT+CGG | - | chr1_4:15225652-15225671 | Msa0152520:three_prime_UTR | 30.0% | |
| AATTCTTGTTCCATCATAGT+GGG | + | chr1_4:15225814-15225833 | None:intergenic | 30.0% | |
| !! | AACACATAGCTATTGTTTTG+TGG | - | chr1_4:15226343-15226362 | Msa0152520:CDS | 30.0% |
| TTCAAACTATGCTATTGTTG+GGG | + | chr1_4:15226620-15226639 | None:intergenic | 30.0% | |
| AATACTGATCGGAAAATTGA+GGG | - | chr1_4:15226656-15226675 | Msa0152520:intron | 30.0% | |
| AATTTGCAAGCCATTTGATT+TGG | - | chr1_4:15226801-15226820 | Msa0152520:intron | 30.0% | |
| TTGGAAAGAACCAAATCAAA+TGG | + | chr1_4:15226814-15226833 | None:intergenic | 30.0% | |
| !! | TTATTGACTATTGGTTCCTT+TGG | - | chr1_4:15226892-15226911 | Msa0152520:intron | 30.0% |
| GTAAATAGGCAAACAAACAA+TGG | + | chr1_4:15227044-15227063 | None:intergenic | 30.0% | |
| ! | ACTCACATTTGAAACATGAA+CGG | + | chr1_4:15227183-15227202 | None:intergenic | 30.0% |
| AATCAATGTTAGGTTTCAGT+AGG | - | chr1_4:15227256-15227275 | Msa0152520:intron | 30.0% | |
| ! | GTTTCCAAACCAAATGATTT+TGG | + | chr1_4:15227417-15227436 | None:intergenic | 30.0% |
| !! | GGCTGATTTTGCTAAAATTT+TGG | - | chr1_4:15227554-15227573 | Msa0152520:CDS | 30.0% |
| ! | GAAGAATTCTTTTCATTCTC+AGG | - | chr1_4:15227781-15227800 | Msa0152520:intron | 30.0% |
| GATAGGATAAAGTAGCAATT+AGG | + | chr1_4:15228215-15228234 | None:intergenic | 30.0% | |
| ! | CACACGAAAATGTTTTACAT+GGG | + | chr1_4:15228434-15228453 | None:intergenic | 30.0% |
| ! | TCACACGAAAATGTTTTACA+TGG | + | chr1_4:15228435-15228454 | None:intergenic | 30.0% |
| ! | CACACGAAAATGTTTTACAT+GGG | + | chr1_4:15228434-15228453 | None:intergenic | 30.0% |
| ! | TCACACGAAAATGTTTTACA+TGG | + | chr1_4:15228435-15228454 | None:intergenic | 30.0% |
| ! | AAAATTTTCCCTCACTTTGT+TGG | - | chr1_4:15228738-15228757 | Msa0152520:intron | 30.0% |
| TATGATTTCCAACAAAGTGA+GGG | + | chr1_4:15228749-15228768 | None:intergenic | 30.0% | |
| TTATGATTTCCAACAAAGTG+AGG | + | chr1_4:15228750-15228769 | None:intergenic | 30.0% | |
| ATTATCAATAGAAGCAACTG+CGG | + | chr1_4:15228978-15228997 | None:intergenic | 30.0% | |
| ! | TTTCACCTTTTCATTGACAA+TGG | + | chr1_4:15229038-15229057 | None:intergenic | 30.0% |
| ! | AACTTTGAGGACTCTTTAAA+CGG | - | chr1_4:15229328-15229347 | Msa0152520:intron | 30.0% |
| TGATTGTTATAGCGATGTAA+AGG | - | chr1_4:15229526-15229545 | Msa0152520:intron | 30.0% | |
| TTGTGTTAAAACCCCTTTAA+AGG | + | chr1_4:15229671-15229690 | None:intergenic | 30.0% | |
| AAGAATCAAGAAACCCATGA+AGG | + | chr1_4:15225750-15225769 | None:intergenic | 35.0% | |
| CAATTCTTGTTCCATCATAG+TGG | + | chr1_4:15225815-15225834 | None:intergenic | 35.0% | |
| !!! | GAAGTATGGTTTTGTAGTGT+TGG | - | chr1_4:15226053-15226072 | Msa0152520:CDS | 35.0% |
| TCATATCACATAACAGCTTG+AGG | + | chr1_4:15226086-15226105 | None:intergenic | 35.0% | |
| ! | GCTCATCAAGTGCATTTTAT+AGG | - | chr1_4:15226253-15226272 | Msa0152520:CDS | 35.0% |
| !! | TTTTTGAATACCGGCTAATG+TGG | - | chr1_4:15226387-15226406 | Msa0152520:CDS | 35.0% |
| ! | CCAACATTTTATCCATTCAC+AGG | + | chr1_4:15226477-15226496 | None:intergenic | 35.0% |
| CCTGTGAATGGATAAAATGT+TGG | - | chr1_4:15226474-15226493 | Msa0152520:CDS | 35.0% | |
| CCTCAATGCATTAGGTTAAT+AGG | + | chr1_4:15226517-15226536 | None:intergenic | 35.0% | |
| CCTATTAACCTAATGCATTG+AGG | - | chr1_4:15226514-15226533 | Msa0152520:intron | 35.0% | |
| ! | AACCTAATGCATTGAGGTTT+TGG | - | chr1_4:15226520-15226539 | Msa0152520:intron | 35.0% |
| ! | ACCTAATGCATTGAGGTTTT+GGG | - | chr1_4:15226521-15226540 | Msa0152520:intron | 35.0% |
| ACCATTTCGACAATACTGAT+CGG | - | chr1_4:15226645-15226664 | Msa0152520:intron | 35.0% | |
| CAATACTGATCGGAAAATTG+AGG | - | chr1_4:15226655-15226674 | Msa0152520:intron | 35.0% | |
| !! | TTGATTTGGTTCTTTCCAAC+CGG | - | chr1_4:15226815-15226834 | Msa0152520:intron | 35.0% |
| TAATATGATAGAGTTCCGGT+TGG | + | chr1_4:15226833-15226852 | None:intergenic | 35.0% | |
| TTAATAGTCTCTGACTCTCT+TGG | - | chr1_4:15226850-15226869 | Msa0152520:intron | 35.0% | |
| CTTGGTATAACCTTTCATCT+TGG | - | chr1_4:15226868-15226887 | Msa0152520:intron | 35.0% | |
| AGTCAATAAGCCAAGATGAA+AGG | + | chr1_4:15226881-15226900 | None:intergenic | 35.0% | |
| ! | CATCTTGGCTTATTGACTAT+TGG | - | chr1_4:15226883-15226902 | Msa0152520:intron | 35.0% |
| ! | GGATTTTCACAACATTTTGG+TGG | - | chr1_4:15226965-15226984 | Msa0152520:intron | 35.0% |
| TGTTAACCTGCTACTGTTTA+TGG | + | chr1_4:15227303-15227322 | None:intergenic | 35.0% | |
| ATTAAGGAACCGAAGATGAT+CGG | - | chr1_4:15227490-15227509 | Msa0152520:intron | 35.0% | |
| ! | TAGTCTTTTCCGATCATCTT+CGG | + | chr1_4:15227502-15227521 | None:intergenic | 35.0% |
| AATATCAACACAGGACACTA+GGG | + | chr1_4:15227619-15227638 | None:intergenic | 35.0% | |
| AAATATCAACACAGGACACT+AGG | + | chr1_4:15227620-15227639 | None:intergenic | 35.0% | |
| GAATTCTTCAATGTCTTGCT+TGG | + | chr1_4:15227770-15227789 | None:intergenic | 35.0% | |
| TTATCCTTAATGTCACCCTT+TGG | - | chr1_4:15227893-15227912 | Msa0152520:intron | 35.0% | |
| TGAATCCTTGAAGGTAACAT+AGG | + | chr1_4:15227956-15227975 | None:intergenic | 35.0% | |
| AGTAGCAATTAGGTACTTAC+TGG | + | chr1_4:15228205-15228224 | None:intergenic | 35.0% | |
| CTCACTTAACGACATAGAAA+CGG | + | chr1_4:15228289-15228308 | None:intergenic | 35.0% | |
| CTTTCCTAAAATGAAACCCT+TGG | + | chr1_4:15228894-15228913 | None:intergenic | 35.0% | |
| !! | CAAGGGTTTCATTTTAGGAA+AGG | - | chr1_4:15228892-15228911 | Msa0152520:intron | 35.0% |
| CAATTGAAGACGTTCATCAA+TGG | + | chr1_4:15228939-15228958 | None:intergenic | 35.0% | |
| CACAACCATTGTCAATGAAA+AGG | - | chr1_4:15229030-15229049 | Msa0152520:intron | 35.0% | |
| CAATGAAAAGGTGAAAGAGA+TGG | - | chr1_4:15229042-15229061 | Msa0152520:intron | 35.0% | |
| GTAAGAATTGCTCATGATAG+CGG | + | chr1_4:15229143-15229162 | None:intergenic | 35.0% | |
| AGCAATTCTTACGTCTTAAC+CGG | - | chr1_4:15229151-15229170 | Msa0152520:intron | 35.0% | |
| ATATGCTCAGATGAACTTTG+AGG | - | chr1_4:15229315-15229334 | Msa0152520:intron | 35.0% | |
| !!! | ACCAGCTTTACTGTCATTTT+CGG | + | chr1_4:15229380-15229399 | None:intergenic | 35.0% |
| !! | CTGTGCTTTTAAGGATGTTA+AGG | + | chr1_4:15229432-15229451 | None:intergenic | 35.0% |
| GAAGAAATGAGAAGAGCAGA+GGG | + | chr1_4:15225690-15225709 | None:intergenic | 40.0% | |
| AGAAGAAATGAGAAGAGCAG+AGG | + | chr1_4:15225691-15225710 | None:intergenic | 40.0% | |
| TGAAACGGAAAGAAAGTGGA+TGG | + | chr1_4:15225724-15225743 | None:intergenic | 40.0% | |
| ! | GATCTGAAACGGAAAGAAAG+TGG | + | chr1_4:15225728-15225747 | None:intergenic | 40.0% |
| TTTCCGTTTCAGATCCTTCA+TGG | - | chr1_4:15225733-15225752 | Msa0152520:three_prime_UTR | 40.0% | |
| TTCCGTTTCAGATCCTTCAT+GGG | - | chr1_4:15225734-15225753 | Msa0152520:three_prime_UTR | 40.0% | |
| AACCCATGAAGGATCTGAAA+CGG | + | chr1_4:15225739-15225758 | None:intergenic | 40.0% | |
| AACCCAACAGCTATGCTAAA+GGG | + | chr1_4:15226421-15226440 | None:intergenic | 40.0% | |
| AAACCCAACAGCTATGCTAA+AGG | + | chr1_4:15226422-15226441 | None:intergenic | 40.0% | |
| ACCCAAAACCTCAATGCATT+AGG | + | chr1_4:15226525-15226544 | None:intergenic | 40.0% | |
| !!! | TAATGCATTGAGGTTTTGGG+TGG | - | chr1_4:15226524-15226543 | Msa0152520:intron | 40.0% |
| TCCGATCAGTATTGTCGAAA+TGG | + | chr1_4:15226649-15226668 | None:intergenic | 40.0% | |
| TGAAGTATGAGATGCACTTG+AGG | + | chr1_4:15226749-15226768 | None:intergenic | 40.0% | |
| CAAACAATGGCAATGACAAG+AGG | + | chr1_4:15227031-15227050 | None:intergenic | 40.0% | |
| !!! | ATTTTTTGTGCAGGCATCAG+TGG | - | chr1_4:15227100-15227119 | Msa0152520:intron | 40.0% |
| CTTCAGCTCTTTGATCAGTA+TGG | + | chr1_4:15227127-15227146 | None:intergenic | 40.0% | |
| GAAACATGAACGGTCCAATT+TGG | + | chr1_4:15227173-15227192 | None:intergenic | 40.0% | |
| !! | CCTAACATTGATTCCTGATC+AGG | + | chr1_4:15227249-15227268 | None:intergenic | 40.0% |
| CCTGATCAGGAATCAATGTT+AGG | - | chr1_4:15227246-15227265 | Msa0152520:intron | 40.0% | |
| TGGCATGCAAAAATCTATCG+CGG | + | chr1_4:15227283-15227302 | None:intergenic | 40.0% | |
| ACTAGGGCACAGATAAGAAT+TGG | + | chr1_4:15227603-15227622 | None:intergenic | 40.0% | |
| ACAACCAAAGGGTGACATTA+AGG | + | chr1_4:15227900-15227919 | None:intergenic | 40.0% | |
| CCTGCAGAATTACAACCAAA+GGG | + | chr1_4:15227911-15227930 | None:intergenic | 40.0% | |
| CCTTTGGTTGTAATTCTGCA+GGG | - | chr1_4:15227909-15227928 | Msa0152520:intron | 40.0% | |
| AGTTGCCTATGTTACCTTCA+AGG | - | chr1_4:15227948-15227967 | Msa0152520:intron | 40.0% | |
| TGTTACCTTCAAGGATTCAC+AGG | - | chr1_4:15227957-15227976 | Msa0152520:intron | 40.0% | |
| GTTACCTTCAAGGATTCACA+GGG | - | chr1_4:15227958-15227977 | Msa0152520:intron | 40.0% | |
| TAGGTACTTACTGGACTTGA+GGG | + | chr1_4:15228196-15228215 | None:intergenic | 40.0% | |
| TTAGGTACTTACTGGACTTG+AGG | + | chr1_4:15228197-15228216 | None:intergenic | 40.0% | |
| !! | AACGGACTAGCATAAGACAA+TGG | + | chr1_4:15228271-15228290 | None:intergenic | 40.0% |
| TCTTAACTGCATCAGCACTT+TGG | + | chr1_4:15228841-15228860 | None:intergenic | 40.0% | |
| !! | AAGTGCTGATGCAGTTAAGA+CGG | - | chr1_4:15228841-15228860 | Msa0152520:intron | 40.0% |
| AATAAGTACCATGCTTGCCA+AGG | - | chr1_4:15228874-15228893 | Msa0152520:intron | 40.0% | |
| ATAAGTACCATGCTTGCCAA+GGG | - | chr1_4:15228875-15228894 | Msa0152520:intron | 40.0% | |
| ! | CTTGCCAAGGGTTTCATTTT+AGG | - | chr1_4:15228887-15228906 | Msa0152520:intron | 40.0% |
| AGGTGAAAGAGATGGATGAA+AGG | - | chr1_4:15229050-15229069 | Msa0152520:intron | 40.0% | |
| ! | TATTGCTGTTGCTGAGCAAA+AGG | - | chr1_4:15229102-15229121 | Msa0152520:intron | 40.0% |
| ACAAGCTGAGGTGGAAAAAA+AGG | - | chr1_4:15229255-15229274 | Msa0152520:intron | 40.0% | |
| TTTGAGGACTCTTTAAACGG+CGG | - | chr1_4:15229331-15229350 | Msa0152520:intron | 40.0% | |
| AACTAACAGGAACTACTGCA+GGG | + | chr1_4:15229357-15229376 | None:intergenic | 40.0% | |
| !!! | CTGTCATTTTCGGAACTAAC+AGG | + | chr1_4:15229370-15229389 | None:intergenic | 40.0% |
| TCCGAAAATGACAGTAAAGC+TGG | - | chr1_4:15229376-15229395 | Msa0152520:intron | 40.0% | |
| ! | AACATCCTTAAAAGCACAGC+TGG | - | chr1_4:15229433-15229452 | Msa0152520:intron | 40.0% |
| ! | TCAATCCAGCTGTGCTTTTA+AGG | + | chr1_4:15229441-15229460 | None:intergenic | 40.0% |
| TCCTCGTGTCATACCTTTAA+AGG | - | chr1_4:15229655-15229674 | Msa0152520:intron | 40.0% | |
| CCTCGTGTCATACCTTTAAA+GGG | - | chr1_4:15229656-15229675 | Msa0152520:intron | 40.0% | |
| ! | CTCGTGTCATACCTTTAAAG+GGG | - | chr1_4:15229657-15229676 | Msa0152520:intron | 40.0% |
| GTAACGTGTTCCCACTATGA+TGG | - | chr1_4:15225801-15225820 | Msa0152520:three_prime_UTR | 45.0% | |
| TGGGAGATTCAGAACTGTGA+TGG | - | chr1_4:15225880-15225899 | Msa0152520:three_prime_UTR | 45.0% | |
| TAGCCCTTTAGCATAGCTGT+TGG | - | chr1_4:15226415-15226434 | Msa0152520:CDS | 45.0% | |
| AGCCCTTTAGCATAGCTGTT+GGG | - | chr1_4:15226416-15226435 | Msa0152520:CDS | 45.0% | |
| ! | TGTTGGGTTTCAAGTGTGAG+TGG | - | chr1_4:15226432-15226451 | Msa0152520:CDS | 45.0% |
| TCACATCACTCACCTGTGAA+TGG | - | chr1_4:15226462-15226481 | Msa0152520:CDS | 45.0% | |
| TGCATGCCATAAACAGTAGC+AGG | - | chr1_4:15227294-15227313 | Msa0152520:intron | 45.0% | |
| CCCTTTGGTTGTAATTCTGC+AGG | - | chr1_4:15227908-15227927 | Msa0152520:intron | 45.0% | |
| CCCTGCAGAATTACAACCAA+AGG | + | chr1_4:15227912-15227931 | None:intergenic | 45.0% | |
| AGAGACAGCAGTTCTCTTGA+CGG | - | chr1_4:15227984-15228003 | Msa0152520:intron | 45.0% | |
| CAGGTGAGATGGTGACATAT+AGG | + | chr1_4:15228141-15228160 | None:intergenic | 45.0% | |
| ATATGTCACCATCTCACCTG+TGG | - | chr1_4:15228141-15228160 | Msa0152520:CDS | 45.0% | |
| ATAACTAGATGGCTGCACTG+TGG | - | chr1_4:15228465-15228484 | Msa0152520:intron | 45.0% | |
| TAACTAGATGGCTGCACTGT+GGG | - | chr1_4:15228466-15228485 | Msa0152520:intron | 45.0% | |
| !! | TGCACTGTGGGTGTTGTTTA+TGG | - | chr1_4:15228478-15228497 | Msa0152520:intron | 45.0% |
| ATAACTAGATGGCTGCACTG+TGG | - | chr1_4:15228465-15228484 | Msa0152520:intron | 45.0% | |
| TAACTAGATGGCTGCACTGT+GGG | - | chr1_4:15228466-15228485 | Msa0152520:intron | 45.0% | |
| !! | TGCACTGTGGGTGTTGTTTA+TGG | - | chr1_4:15228478-15228497 | Msa0152520:intron | 45.0% |
| AATGAAACCCTTGGCAAGCA+TGG | + | chr1_4:15228885-15228904 | None:intergenic | 45.0% | |
| !! | AACTGCGGAAGAAGCATTAG+AGG | + | chr1_4:15228963-15228982 | None:intergenic | 45.0% |
| TGCGTTTAGCGTTGTTGCAA+AGG | - | chr1_4:15229192-15229211 | Msa0152520:intron | 45.0% | |
| ! | AGCTTGTTCAACCTTCTCCA+TGG | + | chr1_4:15229242-15229261 | None:intergenic | 45.0% |
| GAACTAACAGGAACTACTGC+AGG | + | chr1_4:15229358-15229377 | None:intergenic | 45.0% | |
| ! | CCCTTTAAAGGTATGACACG+AGG | + | chr1_4:15229659-15229678 | None:intergenic | 45.0% |
| GGCTATAGTGCCACATTAGC+CGG | + | chr1_4:15226400-15226419 | None:intergenic | 50.0% | |
| !!! | TGAGGTTTTGGGTGGAGATG+TGG | - | chr1_4:15226532-15226551 | Msa0152520:intron | 50.0% |
| !! | TGCTCTAGGACTACAGGAGA+GGG | + | chr1_4:15226563-15226582 | None:intergenic | 50.0% |
| !! | ATGCTCTAGGACTACAGGAG+AGG | + | chr1_4:15226564-15226583 | None:intergenic | 50.0% |
| CTCCTGTAGTCCTAGAGCAT+TGG | - | chr1_4:15226564-15226583 | Msa0152520:intron | 50.0% | |
| !! | GACCAATGCTCTAGGACTAC+AGG | + | chr1_4:15226569-15226588 | None:intergenic | 50.0% |
| AACAACGGGACCAATGCTCT+AGG | + | chr1_4:15226577-15226596 | None:intergenic | 50.0% | |
| AGAGGTCACGGGAGAAACAA+CGG | + | chr1_4:15226592-15226611 | None:intergenic | 50.0% | |
| GCTATTGTTGGGGAGTCTAG+AGG | + | chr1_4:15226610-15226629 | None:intergenic | 50.0% | |
| ! | TTTGGTGTAGCTGTGGAGCA+GGG | + | chr1_4:15227155-15227174 | None:intergenic | 50.0% |
| !! | ATTTGGTGTAGCTGTGGAGC+AGG | + | chr1_4:15227156-15227175 | None:intergenic | 50.0% |
| GCTCCACAGCTACACCAAAT+TGG | - | chr1_4:15227156-15227175 | Msa0152520:CDS | 50.0% | |
| !! | GGTCCAATTTGGTGTAGCTG+TGG | + | chr1_4:15227162-15227181 | None:intergenic | 50.0% |
| TGCTCCCTGTGAATCCTTGA+AGG | + | chr1_4:15227965-15227984 | None:intergenic | 50.0% | |
| !! | ACTTGAGGGAAGTGCTTCAG+GGG | + | chr1_4:15228182-15228201 | None:intergenic | 50.0% |
| !! | GACTTGAGGGAAGTGCTTCA+GGG | + | chr1_4:15228183-15228202 | None:intergenic | 50.0% |
| GAGCAAAAGGCAAGTAGTGC+TGG | - | chr1_4:15229115-15229134 | Msa0152520:intron | 50.0% | |
| ACGTCTTAACCGGAGCTTCA+TGG | - | chr1_4:15229161-15229180 | Msa0152520:intron | 50.0% | |
| GGAGAAGGTTGAACAAGCTG+AGG | - | chr1_4:15229243-15229262 | Msa0152520:intron | 50.0% | |
| GAAGGTTGAACAAGCTGAGG+TGG | - | chr1_4:15229246-15229265 | Msa0152520:intron | 50.0% | |
| CACAGCTGGATTGACCTTGT+TGG | - | chr1_4:15229447-15229466 | Msa0152520:intron | 50.0% | |
| GAGGTCACGGGAGAAACAAC+GGG | + | chr1_4:15226591-15226610 | None:intergenic | 55.0% | |
| TTGGGGAGTCTAGAGGTCAC+GGG | + | chr1_4:15226603-15226622 | None:intergenic | 55.0% | |
| GTTGGGGAGTCTAGAGGTCA+CGG | + | chr1_4:15226604-15226623 | None:intergenic | 55.0% | |
| TGTAGCTGTGGAGCAGGGAA+TGG | + | chr1_4:15227150-15227169 | None:intergenic | 55.0% | |
| GTACTGCTCCACAGGTGAGA+TGG | + | chr1_4:15228152-15228171 | None:intergenic | 55.0% | |
| !! | GGAAGTTGGTACTGCTCCAC+AGG | + | chr1_4:15228160-15228179 | None:intergenic | 55.0% |
| ! | GAAGTGCTTCAGGGGGAAGT+TGG | + | chr1_4:15228174-15228193 | None:intergenic | 55.0% |
| !! | CTTGAGGGAAGTGCTTCAGG+GGG | + | chr1_4:15228181-15228200 | None:intergenic | 55.0% |
| !! | GGACTTGAGGGAAGTGCTTC+AGG | + | chr1_4:15228184-15228203 | None:intergenic | 55.0% |
| ACTCGACAGCCATGAAGCTC+CGG | + | chr1_4:15229173-15229192 | None:intergenic | 55.0% | |
| CGTTGTTGCAAAGGCAGCTG+AGG | - | chr1_4:15229201-15229220 | Msa0152520:intron | 55.0% | |
| GGATGTCAGCACGATGACCA+TGG | - | chr1_4:15229222-15229241 | Msa0152520:intron | 55.0% | |
| CAGCACGATGACCATGGAGA+AGG | - | chr1_4:15229228-15229247 | Msa0152520:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 15225574 | 15229757 | 15225574 | ID=Msa0152520;Name=Msa0152520 |
| chr1_4 | mRNA | 15225574 | 15229757 | 15225574 | ID=Msa0152520-mRNA-1;Parent=Msa0152520;Name=Msa0152520-mRNA-1;_AED=0.22;_eAED=0.22;_QI=94|1|1|1|1|1|6|343|311 |
| chr1_4 | exon | 15225574 | 15226498 | 15225574 | ID=Msa0152520-mRNA-1:exon:5991;Parent=Msa0152520-mRNA-1 |
| chr1_4 | exon | 15227127 | 15227210 | 15227127 | ID=Msa0152520-mRNA-1:exon:5990;Parent=Msa0152520-mRNA-1 |
| chr1_4 | exon | 15227326 | 15227401 | 15227326 | ID=Msa0152520-mRNA-1:exon:5989;Parent=Msa0152520-mRNA-1 |
| chr1_4 | exon | 15227501 | 15227604 | 15227501 | ID=Msa0152520-mRNA-1:exon:5988;Parent=Msa0152520-mRNA-1 |
| chr1_4 | exon | 15228135 | 15228218 | 15228135 | ID=Msa0152520-mRNA-1:exon:5987;Parent=Msa0152520-mRNA-1 |
| chr1_4 | exon | 15229658 | 15229757 | 15229658 | ID=Msa0152520-mRNA-1:exon:5986;Parent=Msa0152520-mRNA-1 |
| chr1_4 | five_prime_UTR | 15229664 | 15229757 | 15229664 | ID=Msa0152520-mRNA-1:five_prime_utr;Parent=Msa0152520-mRNA-1 |
| chr1_4 | CDS | 15229658 | 15229663 | 15229658 | ID=Msa0152520-mRNA-1:cds;Parent=Msa0152520-mRNA-1 |
| chr1_4 | CDS | 15228135 | 15228218 | 15228135 | ID=Msa0152520-mRNA-1:cds;Parent=Msa0152520-mRNA-1 |
| chr1_4 | CDS | 15227501 | 15227604 | 15227501 | ID=Msa0152520-mRNA-1:cds;Parent=Msa0152520-mRNA-1 |
| chr1_4 | CDS | 15227326 | 15227401 | 15227326 | ID=Msa0152520-mRNA-1:cds;Parent=Msa0152520-mRNA-1 |
| chr1_4 | CDS | 15227127 | 15227210 | 15227127 | ID=Msa0152520-mRNA-1:cds;Parent=Msa0152520-mRNA-1 |
| chr1_4 | CDS | 15225917 | 15226498 | 15225917 | ID=Msa0152520-mRNA-1:cds;Parent=Msa0152520-mRNA-1 |
| chr1_4 | three_prime_UTR | 15225574 | 15225916 | 15225574 | ID=Msa0152520-mRNA-1:three_prime_utr;Parent=Msa0152520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
