AlfalfaGEDB | Msa0153690

M. sativa cultivar zhongmu-4 / Msa0153690

KEGG: -
GO: GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772
PFAM: PF12854.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153690	XP_003629614.2	29.717	212	137	1	6	217	262	461	1.41e-14	85.5
Msa0153690	XP_003629614.2	30.102	196	125	2	9	204	230	413	3.84e-15	87.0
Msa0153690	XP_003629614.2	31.579	190	127	2	5	192	331	519	1.52e-18	97.1
Msa0153690	XP_003629614.2	31.953	169	115	0	5	173	296	464	6.43e-16	89.4
Msa0153690	XP_003629614.2	35.882	170	109	0	4	173	365	534	1.24e-21	106
Msa0153690	XP_003629614.2	77.600	250	27	4	1	221	117	366	1.63e-124	378

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153690	sp\|Q9CAN0\|PPR99_ARATH	38.565	223	114	1	5	204	145	367	2.80e-43	159
Msa0153690	sp\|Q9CAN0\|PPR99_ARATH	36.364	165	105	0	6	170	216	380	1.10e-24	106
Msa0153690	sp\|Q9CAN0\|PPR99_ARATH	32.941	170	114	0	9	178	394	563	1.55e-23	103
Msa0153690	sp\|Q9CAN0\|PPR99_ARATH	33.659	205	122	3	6	208	286	478	1.68e-22	100
Msa0153690	sp\|Q9CAN0\|PPR99_ARATH	34.247	146	93	1	37	179	107	252	3.37e-19	90.5
Msa0153690	sp\|Q9CAN0\|PPR99_ARATH	31.325	166	111	1	33	198	453	615	5.42e-18	87.0
Msa0153690	sp\|Q9CAN0\|PPR99_ARATH	29.348	184	117	2	16	199	52	222	2.78e-17	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153690	G7LH31	29.717	212	137	1	6	217	262	461	6.71e-15	85.5
Msa0153690	G7LH31	30.102	196	125	2	9	204	230	413	1.84e-15	87.0
Msa0153690	G7LH31	31.579	190	127	2	5	192	331	519	7.25e-19	97.1
Msa0153690	G7LH31	31.953	169	115	0	5	173	296	464	3.07e-16	89.4
Msa0153690	G7LH31	35.882	170	109	0	4	173	365	534	5.91e-22	106
Msa0153690	G7LH31	77.600	250	27	4	1	221	117	366	7.76e-125	378

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0153690	Msa0153700	0.986968	1.357684e-168	-8.615850e-47
Msa0153690	Msa0153710	0.987672	4.135062e-171	-8.615850e-47
Msa0153690	Msa0198340	0.801056	1.078086e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153690	MtrunA17_Chr8g0378041	77.600	250	27	4	1	221	117	366	1.49e-128	378
Msa0153690	MtrunA17_Chr8g0378041	35.882	170	109	0	4	173	365	534	1.14e-25	106
Msa0153690	MtrunA17_Chr8g0378041	31.579	190	127	2	5	192	331	519	1.40e-22	97.1
Msa0153690	MtrunA17_Chr8g0378041	31.953	169	115	0	5	173	296	464	5.91e-20	89.4
Msa0153690	MtrunA17_Chr8g0378041	30.102	196	125	2	9	204	230	413	3.53e-19	87.0
Msa0153690	MtrunA17_Chr8g0378041	29.717	212	137	1	6	217	262	461	1.29e-18	85.5
Msa0153690	MtrunA17_Chr8g0378041	24.359	156	118	0	6	161	437	592	3.18e-12	66.6
Msa0153690	MtrunA17_Chr3g0099981	47.768	224	94	1	4	204	100	323	4.76e-64	211
Msa0153690	MtrunA17_Chr3g0099981	33.333	168	112	0	6	173	242	409	5.36e-21	92.4
Msa0153690	MtrunA17_Chr3g0099981	30.769	169	117	0	8	176	209	377	1.47e-19	88.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153690	AT1G63130.1	38.565	223	114	1	5	204	145	367	2.84e-44	159
Msa0153690	AT1G63130.1	36.364	165	105	0	6	170	216	380	1.12e-25	106
Msa0153690	AT1G63130.1	32.941	170	114	0	9	178	394	563	1.57e-24	103
Msa0153690	AT1G63130.1	33.659	205	122	3	6	208	286	478	1.71e-23	100
Msa0153690	AT1G63130.1	34.247	146	93	1	37	179	107	252	3.43e-20	90.5
Msa0153690	AT1G63130.1	31.325	166	111	1	33	198	453	615	5.51e-19	87.0
Msa0153690	AT1G63130.1	29.348	184	117	2	16	199	52	222	2.82e-18	85.1
Msa0153690	AT1G63130.1	26.619	139	102	0	4	142	459	597	5.16e-11	63.2
Msa0153690	AT1G63130.2	38.565	223	114	1	5	204	145	367	2.84e-44	159
Msa0153690	AT1G63130.2	36.364	165	105	0	6	170	216	380	1.12e-25	106

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Find 76 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCCGAAGCTGTTGGG+TGG	0.642161	1_4:+17336864	Msa0153690:CDS
AAAGAAATGCATTCTTCTTT+AGG	0.223512	1_4:+17336572	None:intergenic
AAATGAGTGGGAAGGGTATT+AGG	0.327368	1_4:+17336999	Msa0153690:CDS
AAATTGGAACCCTAATGTGG+TGG	0.637300	1_4:+17336907	Msa0153690:CDS
AAGCTTATAGTAAATCTGCA+GGG	0.695265	1_4:+17337508	Msa0153690:CDS
AATAAATTGGAACCCTAATG+TGG	0.586460	1_4:+17336904	Msa0153690:CDS
ACAAAGCCCATTGATAAGAA+TGG	0.524803	1_4:-17336726	None:intergenic
ACATTAAGAATGAAAGTATC+AGG	0.399117	1_4:-17336602	None:intergenic
ACTTACACTTGTTTGATTCA+AGG	0.392533	1_4:+17337034	Msa0153690:CDS
ACTTATGGGGTGTTGATTAA+TGG	0.214219	1_4:+17336824	Msa0153690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAGCAACCAACTTTAAA+TGG	-	chr1_4:17336646-17336665	None:intergenic	30.0%
CGATATGATGTTAAGACTTA+TGG	+	chr1_4:17336809-17336828	Msa0153690:CDS	30.0%
AATAAATTGGAACCCTAATG+TGG	+	chr1_4:17336904-17336923	Msa0153690:CDS	30.0%
CAAGTGTAAGTAACAAGATT+AGG	-	chr1_4:17337025-17337044	None:intergenic	30.0%
ACTTACACTTGTTTGATTCA+AGG	+	chr1_4:17337034-17337053	Msa0153690:CDS	30.0%
TTGGATGAGATGATGAAAAT+AGG	+	chr1_4:17337097-17337116	Msa0153690:intron	30.0%
ATGTTAAGTGATTGCAAATC+CGG	-	chr1_4:17337134-17337153	None:intergenic	30.0%
GAATTGTAGGTAAATACATC+CGG	-	chr1_4:17337239-17337258	None:intergenic	30.0%
TATTTGATCTAATGGTTAGC+AGG	+	chr1_4:17337309-17337328	Msa0153690:intron	30.0%
ATTTGATCTAATGGTTAGCA+GGG	+	chr1_4:17337310-17337329	Msa0153690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	17336578	17337602	17336578	ID=Msa0153690;Name=Msa0153690
chr1_4	mRNA	17336578	17337602	17336578	ID=Msa0153690-mRNA-1;Parent=Msa0153690;Name=Msa0153690-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0\|0\|1\|1\|1\|3\|0\|279
chr1_4	exon	17336578	17337088	17336578	ID=Msa0153690-mRNA-1:exon:6564;Parent=Msa0153690-mRNA-1
chr1_4	exon	17337162	17337241	17337162	ID=Msa0153690-mRNA-1:exon:6565;Parent=Msa0153690-mRNA-1
chr1_4	exon	17337354	17337602	17337354	ID=Msa0153690-mRNA-1:exon:6566;Parent=Msa0153690-mRNA-1
chr1_4	CDS	17336578	17337088	17336578	ID=Msa0153690-mRNA-1:cds;Parent=Msa0153690-mRNA-1
chr1_4	CDS	17337162	17337241	17337162	ID=Msa0153690-mRNA-1:cds;Parent=Msa0153690-mRNA-1
chr1_4	CDS	17337354	17337602	17337354	ID=Msa0153690-mRNA-1:cds;Parent=Msa0153690-mRNA-1

Gene Sequence

>Msa0153690

ATGCATTCTTCTTTAGGTATAAAGCCTGATACTTTCATTCTTAATGTTGTTATTAATTCACTTTGCCATTTAAAGTTGGTTGCTTTTGGGTTTTCTGTGCTGGGGACTATGTTTAAACTTGGTTTTGAGCCTTCTGTGGTGACTTTTACCATTCTTATCAATGGGCTTTGTGTGAAAGGCGACATGGGTCGGGCCGTGGAGTTGGTTGATCATATGGAAAAGACGGGGTATCGATATGATGTTAAGACTTATGGGGTGTTGATTAATGGGTTGTGTAAGATGGGCAAAACTTCCGAAGCTGTTGGGTGGTTAAGGAAGATGGAGGAAATAAATTGGAACCCTAATGTGGTGGTTTATAGCACAGTTATGGATGGTATGTGCAAGGATGGATTGGTATCTGAGGCGTTAGGTTTGTGTTTGGAAATGAGTGGGAAGGGTATTAGGCCTAATCTTGTTACTTACACTTGTTTGATTCAAGGTCTTTGTAATTTCGGACGTTGGAAAGAGGCTGATGCTCTTTGCAAAGAAGGGAAAATTATGCAGGCAAAAAGTGTGGTTGGTTTTATGATTTTGATAGGGGAAGTGCCGGATCTTACACTTCGCTCATCCATAGCTGAATGCAATAAAAAAGATGAACAATTGATGGAGTCTGAAATAAGCAGAAGGTTTTTGGAGCAAAGGAGATACATTTCTGAAGGAGCTCTTAAGAGAGATAAACCAGTTTGTAATGGTGGTGCAGGTGGTGAAGCTTATAGTAAATCTGCAGGGTGTATTCCTCCACCTTCAAATCCTTATAATAGAGGATGTTCTAAGTATTATCGTTGTAGGTCTGATTCTTGA

Protein sequence

>Msa0153690

MHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMFKLGFEPSVVTFTILINGLCVKGDMGRAVELVDHMEKTGYRYDVKTYGVLINGLCKMGKTSEAVGWLRKMEEINWNPNVVVYSTVMDGMCKDGLVSEALGLCLEMSGKGIRPNLVTYTCLIQGLCNFGRWKEADALCKEGKIMQAKSVVGFMILIGEVPDLTLRSSIAECNKKDEQLMESEISRRFLEQRRYISEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNPYNRGCSKYYRCRSDS*