AlfalfaGEDB | Msa0198340

M. sativa cultivar zhongmu-4 / Msa0198340

KEGG: K13464
GO: GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198340	XP_004503368.1	70.959	365	74	9	1	353	1	345	2.01e-163	470

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198340	sp\|Q9LVI4\|TIF6B_ARATH	35.263	380	178	19	1	353	1	339	1.46e-32	127

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198340	A0A1S2YF40	70.959	365	74	9	1	353	1	345	9.62e-164	470

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TFs/TRs:

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Gene ID	Type	Classification
Msa0198340	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044260	Msa0198340	0.826439	2.711748e-54	-8.615850e-47
Msa0044330	Msa0198340	0.810575	1.076623e-50	-8.615850e-47
Msa0137100	Msa0198340	0.809291	2.034686e-50	-8.615850e-47
Msa0142220	Msa0198340	0.811275	7.597048e-51	-8.615850e-47
Msa0153690	Msa0198340	0.801056	1.078086e-48	-8.615850e-47
Msa0153710	Msa0198340	0.802627	5.129303e-49	-8.615850e-47
Msa0198340	Msa0211150	0.806700	7.243204e-50	-8.615850e-47
Msa0198340	Msa0216910	0.806310	8.754875e-50	-8.615850e-47
Msa0198340	Msa0218810	0.808778	2.620216e-50	-8.615850e-47
Msa0198340	Msa0326940	0.804433	2.165364e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198340	MtrunA17_Chr1g0161031	51.771	367	127	8	1	349	1	335	9.42e-107	317
Msa0198340	MtrunA17_Chr6g0478581	31.235	413	204	13	1	351	1	395	2.18e-42	152
Msa0198340	MtrunA17_Chr2g0301131	34.302	172	80	5	182	348	97	240	1.21e-14	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0198340	AT3G17860.1	35.263	380	178	19	1	353	1	339	1.48e-33	127
Msa0198340	AT3G17860.2	35.000	340	159	17	43	353	20	326	4.12e-29	115
Msa0198340	AT3G17860.3	36.937	333	152	19	48	353	5	306	7.51e-29	114
Msa0198340	AT3G17860.4	36.937	333	152	19	48	353	5	306	7.51e-29	114
Msa0198340	AT1G70700.1	38.596	228	92	7	121	341	58	244	6.94e-24	99.4
Msa0198340	AT1G48500.1	31.593	364	164	16	1	350	1	293	8.01e-24	100
Msa0198340	AT1G70700.2	35.135	222	84	7	121	341	58	220	7.39e-22	93.6
Msa0198340	AT1G70700.3	38.009	221	89	7	121	334	58	237	1.63e-20	90.5
Msa0198340	AT1G48500.2	30.836	347	156	15	1	334	1	276	4.19e-19	86.7
Msa0198340	AT1G48500.3	30.333	300	137	12	48	334	6	246	4.23e-15	74.7

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Find 109 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGAGAGATTTCAT+GGG	0.682366	2_1:+16918974	Msa0198340:exon
AACAAAGAGAGATACCTTGT+CGG	0.533016	2_1:-16920992	None:intergenic
AAGAGAGATACCTTGTCGGC+AGG	0.494472	2_1:-16920988	None:intergenic
AAGATGGTAAGTTGGGAAGA+AGG	0.425596	2_1:-16920931	None:intergenic
AAGCTATCCTGTTGTTGGCT+AGG	0.504599	2_1:+16921350	Msa0198340:CDS
AAGGATGCTTTCCGAGCCTG+AGG	0.641286	2_1:-16921837	None:intergenic
AATACTCTCTCAGCCAAGCA+AGG	0.617603	2_1:+16922191	Msa0198340:three_prime_UTR
AATATGAAGCCGCCACTGCT+TGG	0.406714	2_1:+16920716	Msa0198340:CDS
AATCGATGCCATTACCATGC+TGG	0.562603	2_1:+16921612	Msa0198340:CDS
ACCACTCCTGTTAGCAATGC+CGG	0.371402	2_1:+16921577	Msa0198340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGTGAGAGATTTCAT+GGG	+	chr2_1:16918974-16918993	Msa0198340:exon	30.0%
AAGTACTTTCCAATCATGTT+TGG	+	chr2_1:16919088-16919107	Msa0198340:intron	30.0%
ATCAGTTTGACAAAATTAGG+TGG	-	chr2_1:16919453-16919472	None:intergenic	30.0%
TTATCCCTTAAAGTTTAGTG+GGG	+	chr2_1:16919809-16919828	Msa0198340:intron	30.0%
AATTCCCCACTAAACTTTAA+GGG	-	chr2_1:16919816-16919835	None:intergenic	30.0%
TAATTCCCCACTAAACTTTA+AGG	-	chr2_1:16919817-16919836	None:intergenic	30.0%
CATAAAACCAGCAGATATTA+TGG	-	chr2_1:16919999-16920018	None:intergenic	30.0%
TTAATGATCGACGATTATGA+TGG	+	chr2_1:16920214-16920233	Msa0198340:intron	30.0%
GCTTATGAACAAGTAACATT+TGG	+	chr2_1:16920314-16920333	Msa0198340:intron	30.0%
ATTAAGCTTGACTATGGTAA+AGG	-	chr2_1:16921307-16921326	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	16918894	16922394	16918894	ID=Msa0198340;Name=Msa0198340
chr2_1	mRNA	16918894	16922394	16918894	ID=Msa0198340-mRNA-1;Parent=Msa0198340;Name=Msa0198340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=83\|1\|1\|1\|1\|1\|7\|239\|353
chr2_1	exon	16918894	16919085	16918894	ID=Msa0198340-mRNA-1:exon:7030;Parent=Msa0198340-mRNA-1
chr2_1	exon	16919882	16920069	16919882	ID=Msa0198340-mRNA-1:exon:7031;Parent=Msa0198340-mRNA-1
chr2_1	exon	16920545	16920807	16920545	ID=Msa0198340-mRNA-1:exon:7032;Parent=Msa0198340-mRNA-1
chr2_1	exon	16920912	16920999	16920912	ID=Msa0198340-mRNA-1:exon:7033;Parent=Msa0198340-mRNA-1
chr2_1	exon	16921346	16921640	16921346	ID=Msa0198340-mRNA-1:exon:7034;Parent=Msa0198340-mRNA-1
chr2_1	exon	16921832	16921889	16921832	ID=Msa0198340-mRNA-1:exon:7035;Parent=Msa0198340-mRNA-1
chr2_1	exon	16922095	16922394	16922095	ID=Msa0198340-mRNA-1:exon:7036;Parent=Msa0198340-mRNA-1
chr2_1	five_prime_UTR	16918894	16918976	16918894	ID=Msa0198340-mRNA-1:five_prime_utr;Parent=Msa0198340-mRNA-1
chr2_1	CDS	16918977	16919085	16918977	ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1
chr2_1	CDS	16919882	16920069	16919882	ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1
chr2_1	CDS	16920545	16920807	16920545	ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1
chr2_1	CDS	16920912	16920999	16920912	ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1
chr2_1	CDS	16921346	16921640	16921346	ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1
chr2_1	CDS	16921832	16921889	16921832	ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1
chr2_1	CDS	16922095	16922155	16922095	ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1
chr2_1	three_prime_UTR	16922156	16922394	16922156	ID=Msa0198340-mRNA-1:three_prime_utr;Parent=Msa0198340-mRNA-1

Gene Sequence

>Msa0198340

ATGGTGAGAGATTTCATGGGTTTGAACTCAAAAGAAAAAGAACTACTCTATGTTACTGCTAAGGAGGAGGAAATCAACCATGATGATGATGGATCATGCAAACACTCTGGCTTCACAAAAGGTTCGGGTGCACAGTTGCCCTTCTCCAACAAAGTATCTGCTCAACCACATTTGATGTCTTTTGAGGTTTCTCAAGATGATACCACAAAGATCTTATCTGATCCCATAATATCTGCTGGTTTTATGACTCCAGACGCATTTGACTCTAGTAAAAAACTCTCTGCTGCTGAACCTCAGAAATCTTTCAATCATGATGGGCAAGGCGGCTTTAATTTTTCACGTACTCGGTATCCTGTACAACATGATGTGAAGATGTTTTCACTTTCCAATCAAACGAATTCAGTTTCGTTGATGAACTCATTCCCGAGGAATCATTTTGTAACTGCTGGTCAGAATATGAATGGTAATAATATGAAGCCGCCACTGCTTGGGGGAATACCTGTTACAGCACCTCAATCACCTGTTCCCACCATTGGTGCCGTTGCTGGAATGACTGAATCCAATGTGAAACCATCTCTGCCTTCTTCCCAACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTCAATGACATCCCTGCCGACAAGGCACAAGCTATCCTGTTGTTGGCTAGGAATGGCGTATCAGTGGCTTCTAACATAGCACAGACAGAACTTCAGGCACCTGGTGACGGTGTGCCCGTGAGTCAACCTGCAAATGCACCACCCTCCTCTGGTCATCCAAGTCCTATATCTATTTCATCGCATACTGGTGCACAGTCAGGCAGTGGCTCAACTAGCACTGATGAATTTCTCGCAGTTAAAACAACTGGTGTTCCCACCACTCCTGTTAGCAATGCCGGGCCTCCTAAAGTAATCGATGCCATTACCATGCTGGCGTCAGCTATACCTCAGGCTCGGAAAGCATCCTTGACTCGATTTTTAGAAAAGCGCAAGGAGAGGGTGATGAATGCAGCACCATACAACCATAACAAGAAATCTGAAGAGTGTACTGCTTCATAA

Protein sequence

>Msa0198340

MVRDFMGLNSKEKELLYVTAKEEEINHDDDGSCKHSGFTKGSGAQLPFSNKVSAQPHLMSFEVSQDDTTKILSDPIISAGFMTPDAFDSSKKLSAAEPQKSFNHDGQGGFNFSRTRYPVQHDVKMFSLSNQTNSVSLMNSFPRNHFVTAGQNMNGNNMKPPLLGGIPVTAPQSPVPTIGAVAGMTESNVKPSLPSSQLTIFYAGTVNVFNDIPADKAQAILLLARNGVSVASNIAQTELQAPGDGVPVSQPANAPPSSGHPSPISISSHTGAQSGSGSTSTDEFLAVKTTGVPTTPVSNAGPPKVIDAITMLASAIPQARKASLTRFLEKRKERVMNAAPYNHNKKSEECTAS*