Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198340 | XP_004503368.1 | 70.959 | 365 | 74 | 9 | 1 | 353 | 1 | 345 | 2.01e-163 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198340 | sp|Q9LVI4|TIF6B_ARATH | 35.263 | 380 | 178 | 19 | 1 | 353 | 1 | 339 | 1.46e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198340 | A0A1S2YF40 | 70.959 | 365 | 74 | 9 | 1 | 353 | 1 | 345 | 9.62e-164 | 470 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0198340 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044260 | Msa0198340 | 0.826439 | 2.711748e-54 | -8.615850e-47 |
| Msa0044330 | Msa0198340 | 0.810575 | 1.076623e-50 | -8.615850e-47 |
| Msa0137100 | Msa0198340 | 0.809291 | 2.034686e-50 | -8.615850e-47 |
| Msa0142220 | Msa0198340 | 0.811275 | 7.597048e-51 | -8.615850e-47 |
| Msa0153690 | Msa0198340 | 0.801056 | 1.078086e-48 | -8.615850e-47 |
| Msa0153710 | Msa0198340 | 0.802627 | 5.129303e-49 | -8.615850e-47 |
| Msa0198340 | Msa0211150 | 0.806700 | 7.243204e-50 | -8.615850e-47 |
| Msa0198340 | Msa0216910 | 0.806310 | 8.754875e-50 | -8.615850e-47 |
| Msa0198340 | Msa0218810 | 0.808778 | 2.620216e-50 | -8.615850e-47 |
| Msa0198340 | Msa0326940 | 0.804433 | 2.165364e-49 | -8.615850e-47 |
| Msa0198340 | Msa0405570 | 0.806086 | 9.758362e-50 | -8.615850e-47 |
| Msa0198340 | Msa0407750 | 0.810334 | 1.213922e-50 | -8.615850e-47 |
| Msa0198340 | Msa0479340 | 0.801858 | 7.384212e-49 | -8.615850e-47 |
| Msa0198340 | Msa0664410 | 0.809765 | 1.609336e-50 | -8.615850e-47 |
| Msa0198340 | Msa0701010 | 0.801564 | 8.485578e-49 | -8.615850e-47 |
| Msa0198340 | Msa0701830 | 0.812240 | 4.683163e-51 | -8.615850e-47 |
| Msa0198340 | Msa0703360 | 0.806738 | 7.110190e-50 | -8.615850e-47 |
| Msa0198340 | Msa0753720 | 0.800027 | 1.746872e-48 | -8.615850e-47 |
| Msa0198340 | Msa0760130 | 0.804101 | 2.539054e-49 | -8.615850e-47 |
| Msa0198340 | Msa0766630 | 0.810946 | 8.948737e-51 | -8.615850e-47 |
| Msa0198340 | Msa0844490 | 0.807906 | 4.019877e-50 | -8.615850e-47 |
| Msa0198340 | Msa0897330 | 0.805262 | 1.453359e-49 | -8.615850e-47 |
| Msa0198340 | Msa0965610 | 0.803902 | 2.792831e-49 | -8.615850e-47 |
| Msa0198340 | Msa0997370 | 0.811226 | 7.781670e-51 | -8.615850e-47 |
| Msa0198340 | Msa1000890 | 0.800768 | 1.234384e-48 | -8.615850e-47 |
| Msa0198340 | Msa1000900 | 0.808458 | 3.066507e-50 | -8.615850e-47 |
| Msa0198340 | Msa1004390 | 0.811824 | 5.771588e-51 | -8.615850e-47 |
| Msa0198340 | Msa1016320 | 0.824182 | 9.272664e-54 | -8.615850e-47 |
| Msa0198340 | Msa1019000 | 0.815375 | 9.546179e-52 | -8.615850e-47 |
| Msa0198340 | Msa1036610 | 0.800573 | 1.353055e-48 | -8.615850e-47 |
| Msa0198340 | Msa1053720 | 0.807036 | 6.149706e-50 | -8.615850e-47 |
| Msa0198340 | Msa1121480 | 0.801993 | 6.926465e-49 | -8.615850e-47 |
| Msa0198340 | Msa1121490 | 0.820551 | 6.460336e-53 | -8.615850e-47 |
| Msa0198340 | Msa1124020 | 0.801128 | 1.042202e-48 | -8.615850e-47 |
| Msa0198340 | Msa1137570 | 0.803421 | 3.514945e-49 | -8.615850e-47 |
| Msa0198340 | Msa1142020 | 0.800671 | 1.291762e-48 | -8.615850e-47 |
| Msa0198340 | Msa1146100 | 0.806992 | 6.284252e-50 | -8.615850e-47 |
| Msa0198340 | Msa1152440 | 0.805896 | 1.069763e-49 | -8.615850e-47 |
| Msa0198340 | Msa1253000 | 0.814190 | 1.747920e-51 | -8.615850e-47 |
| Msa0198340 | Msa1272680 | 0.819712 | 1.005738e-52 | -8.615850e-47 |
| Msa0198340 | Msa1276890 | 0.801563 | 8.489497e-49 | -8.615850e-47 |
| Msa0198340 | Msa1284680 | 0.831809 | 1.351998e-55 | -8.615850e-47 |
| Msa0198340 | Msa1372760 | 0.801052 | 1.079978e-48 | -8.615850e-47 |
| Msa0198340 | Msa1373030 | 0.806005 | 1.014639e-49 | -8.615850e-47 |
| Msa0198340 | Msa1388510 | 0.817521 | 3.158113e-52 | -8.615850e-47 |
| Msa0198340 | Msa1466540 | 0.807300 | 5.407891e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198340 | MtrunA17_Chr1g0161031 | 51.771 | 367 | 127 | 8 | 1 | 349 | 1 | 335 | 9.42e-107 | 317 |
| Msa0198340 | MtrunA17_Chr6g0478581 | 31.235 | 413 | 204 | 13 | 1 | 351 | 1 | 395 | 2.18e-42 | 152 |
| Msa0198340 | MtrunA17_Chr2g0301131 | 34.302 | 172 | 80 | 5 | 182 | 348 | 97 | 240 | 1.21e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198340 | AT3G17860.1 | 35.263 | 380 | 178 | 19 | 1 | 353 | 1 | 339 | 1.48e-33 | 127 |
| Msa0198340 | AT3G17860.2 | 35.000 | 340 | 159 | 17 | 43 | 353 | 20 | 326 | 4.12e-29 | 115 |
| Msa0198340 | AT3G17860.3 | 36.937 | 333 | 152 | 19 | 48 | 353 | 5 | 306 | 7.51e-29 | 114 |
| Msa0198340 | AT3G17860.4 | 36.937 | 333 | 152 | 19 | 48 | 353 | 5 | 306 | 7.51e-29 | 114 |
| Msa0198340 | AT1G70700.1 | 38.596 | 228 | 92 | 7 | 121 | 341 | 58 | 244 | 6.94e-24 | 99.4 |
| Msa0198340 | AT1G48500.1 | 31.593 | 364 | 164 | 16 | 1 | 350 | 1 | 293 | 8.01e-24 | 100 |
| Msa0198340 | AT1G70700.2 | 35.135 | 222 | 84 | 7 | 121 | 341 | 58 | 220 | 7.39e-22 | 93.6 |
| Msa0198340 | AT1G70700.3 | 38.009 | 221 | 89 | 7 | 121 | 334 | 58 | 237 | 1.63e-20 | 90.5 |
| Msa0198340 | AT1G48500.2 | 30.836 | 347 | 156 | 15 | 1 | 334 | 1 | 276 | 4.19e-19 | 86.7 |
| Msa0198340 | AT1G48500.3 | 30.333 | 300 | 137 | 12 | 48 | 334 | 6 | 246 | 4.23e-15 | 74.7 |
Find 109 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCTTTGTCTCTGAAAA+TGG | 0.187386 | 2_1:+16918958 | Msa0198340:exon |
| CATAAAACCAGCAGATATTA+TGG | 0.223690 | 2_1:-16919996 | None:intergenic |
| AGAAAAGAAAGAAAATTAAA+AGG | 0.266068 | 2_1:-16918901 | None:intergenic |
| CGAAACTGAATTCGTTTGAT+TGG | 0.273105 | 2_1:-16920633 | None:intergenic |
| GAGGAGGGTGGTGCATTTGC+AGG | 0.320510 | 2_1:-16921448 | None:intergenic |
| GTAATGGCATCGATTACTTT+AGG | 0.330657 | 2_1:-16921604 | None:intergenic |
| CCCACCATTGGTGCCGTTGC+TGG | 0.348704 | 2_1:+16920773 | Msa0198340:CDS |
| GATTTCTTGTTATGGTTGTA+TGG | 0.351654 | 2_1:-16922111 | None:intergenic |
| CTCAAACACCATAACTTTAG+TGG | 0.354789 | 2_1:+16922319 | Msa0198340:three_prime_UTR |
| ACTCTTCAGATTTCTTGTTA+TGG | 0.360877 | 2_1:-16922119 | None:intergenic |
| GAAAATGGTGAGAGATTTCA+TGG | 0.368883 | 2_1:+16918973 | Msa0198340:exon |
| ATATGAAGCCGCCACTGCTT+GGG | 0.369177 | 2_1:+16920717 | Msa0198340:CDS |
| ACCACTCCTGTTAGCAATGC+CGG | 0.371402 | 2_1:+16921577 | Msa0198340:CDS |
| GGAGGCCCGGCATTGCTAAC+AGG | 0.379698 | 2_1:-16921583 | None:intergenic |
| GGTGATTGAGGTGCTGTAAC+AGG | 0.402330 | 2_1:-16920746 | None:intergenic |
| AATATGAAGCCGCCACTGCT+TGG | 0.406714 | 2_1:+16920716 | Msa0198340:CDS |
| TTTCTCGCAGTTAAAACAAC+TGG | 0.425409 | 2_1:+16921547 | Msa0198340:CDS |
| AAGATGGTAAGTTGGGAAGA+AGG | 0.425596 | 2_1:-16920931 | None:intergenic |
| TTACTAGAGTCAAATGCGTC+TGG | 0.431875 | 2_1:-16920022 | None:intergenic |
| CATAGCACAGACAGAACTTC+AGG | 0.434059 | 2_1:+16921396 | Msa0198340:CDS |
| CGCATAGAAGATGGTAAGTT+GGG | 0.437429 | 2_1:-16920938 | None:intergenic |
| CGCCATTCCTAGCCAACAAC+AGG | 0.438442 | 2_1:-16921357 | None:intergenic |
| GGCACAAGCTATCCTGTTGT+TGG | 0.441454 | 2_1:+16921345 | Msa0198340:intron |
| TGTAGGCTTCACAAAAGGTT+CGG | 0.441605 | 2_1:+16919877 | Msa0198340:intron |
| GCCATTACCATGCTGGCGTC+AGG | 0.443156 | 2_1:+16921619 | Msa0198340:CDS |
| ACGGCACCAATGGTGGGAAC+AGG | 0.446208 | 2_1:-16920767 | None:intergenic |
| ATATCTATTTCATCGCATAC+TGG | 0.447688 | 2_1:+16921487 | Msa0198340:CDS |
| ACTCTCTGCTGCTGAACCTC+AGG | 0.447860 | 2_1:+16920048 | Msa0198340:CDS |
| AGCAGATACTTTGTTGGAGA+AGG | 0.457694 | 2_1:-16919912 | None:intergenic |
| GCCCTACACCACTAAAGTTA+TGG | 0.464159 | 2_1:-16922327 | None:intergenic |
| ATCGATTACTTTAGGAGGCC+CGG | 0.464340 | 2_1:-16921596 | None:intergenic |
| TAGAAATCTTTCAATCATGA+TGG | 0.465598 | 2_1:+16920542 | Msa0198340:intron |
| TAGGGACTATTATCCTTGCT+TGG | 0.466049 | 2_1:-16922204 | None:intergenic |
| TTGTTAATTCAAAGGTGGAC+TGG | 0.471778 | 2_1:+16922357 | Msa0198340:three_prime_UTR |
| ACCTGACGCCAGCATGGTAA+TGG | 0.472716 | 2_1:-16921620 | None:intergenic |
| GTAGGCTTCACAAAAGGTTC+GGG | 0.473793 | 2_1:+16919878 | Msa0198340:intron |
| TCGCATACTGGTGCACAGTC+AGG | 0.473936 | 2_1:+16921499 | Msa0198340:CDS |
| ATAAAACCAGCAGATATTAT+GGG | 0.477557 | 2_1:-16919995 | None:intergenic |
| GGATAATAGTCCCTACCCTT+AGG | 0.481589 | 2_1:+16922212 | Msa0198340:three_prime_UTR |
| TGCATTTGCAGGTTGACTCA+CGG | 0.485260 | 2_1:-16921437 | None:intergenic |
| GCAAATGCACCACCCTCCTC+TGG | 0.488995 | 2_1:+16921451 | Msa0198340:CDS |
| TAAATAGTTTCCTAAGGGTA+GGG | 0.489653 | 2_1:-16922222 | None:intergenic |
| GAAATCAACCATGATGATGA+TGG | 0.493023 | 2_1:+16919046 | Msa0198340:CDS |
| AAGAGAGATACCTTGTCGGC+AGG | 0.494472 | 2_1:-16920988 | None:intergenic |
| AGTTGGGAAGAAGGCAGAGA+TGG | 0.495544 | 2_1:-16920922 | None:intergenic |
| TCTGATCCCATAATATCTGC+TGG | 0.495658 | 2_1:+16919989 | Msa0198340:CDS |
| CAATCACCTGTTCCCACCAT+TGG | 0.496425 | 2_1:+16920761 | Msa0198340:CDS |
| GTATGCGATGAAATAGATAT+AGG | 0.500381 | 2_1:-16921484 | None:intergenic |
| AAGCTATCCTGTTGTTGGCT+AGG | 0.504599 | 2_1:+16921350 | Msa0198340:CDS |
| CCACTCCTGTTAGCAATGCC+GGG | 0.505459 | 2_1:+16921578 | Msa0198340:CDS |
| CAACTTACCATCTTCTATGC+GGG | 0.506683 | 2_1:+16920940 | Msa0198340:CDS |
| ATCTTCACATCATGTTGTAC+AGG | 0.507813 | 2_1:-16920599 | None:intergenic |
| TCCAGCAACGGCACCAATGG+TGG | 0.513212 | 2_1:-16920774 | None:intergenic |
| GGGATCAGATAAGATCTTTG+TGG | 0.514242 | 2_1:-16919975 | None:intergenic |
| TATGAAGCCGCCACTGCTTG+GGG | 0.518578 | 2_1:+16920718 | Msa0198340:CDS |
| CCGCATAGAAGATGGTAAGT+TGG | 0.523235 | 2_1:-16920939 | None:intergenic |
| ACCATAACTTTAGTGGTGTA+GGG | 0.523838 | 2_1:+16922326 | Msa0198340:three_prime_UTR |
| GCATTTGCAGGTTGACTCAC+GGG | 0.524091 | 2_1:-16921436 | None:intergenic |
| GCAGTTACAAAATGATTCCT+CGG | 0.526505 | 2_1:-16920671 | None:intergenic |
| TTAAATAGTTTCCTAAGGGT+AGG | 0.531234 | 2_1:-16922223 | None:intergenic |
| AACAAAGAGAGATACCTTGT+CGG | 0.533016 | 2_1:-16920992 | None:intergenic |
| GACAGTACCCGCATAGAAGA+TGG | 0.534138 | 2_1:-16920947 | None:intergenic |
| ATCCTGTTGTTGGCTAGGAA+TGG | 0.535261 | 2_1:+16921355 | Msa0198340:CDS |
| GGCATTGCTAACAGGAGTGG+TGG | 0.535707 | 2_1:-16921575 | None:intergenic |
| CTCACGGGCACACCGTCACC+AGG | 0.540218 | 2_1:-16921421 | None:intergenic |
| GCAGATACTTTGTTGGAGAA+GGG | 0.540845 | 2_1:-16919911 | None:intergenic |
| CACCATAACTTTAGTGGTGT+AGG | 0.542640 | 2_1:+16922325 | Msa0198340:three_prime_UTR |
| CAGTTACAAAATGATTCCTC+GGG | 0.542977 | 2_1:-16920670 | None:intergenic |
| TGGTTGAGCAGATACTTTGT+TGG | 0.544831 | 2_1:-16919918 | None:intergenic |
| AGAGAGATACCTTGTCGGCA+GGG | 0.552823 | 2_1:-16920987 | None:intergenic |
| TGCATGATCCATCATCATCA+TGG | 0.557307 | 2_1:-16919054 | None:intergenic |
| AATCGATGCCATTACCATGC+TGG | 0.562603 | 2_1:+16921612 | Msa0198340:CDS |
| AGAAATCTTTCAATCATGAT+GGG | 0.564188 | 2_1:+16920543 | Msa0198340:intron |
| CTATGTTACTGCTAAGGAGG+AGG | 0.565981 | 2_1:+16919024 | Msa0198340:CDS |
| CAGACAGAACTTCAGGCACC+TGG | 0.577240 | 2_1:+16921403 | Msa0198340:CDS |
| ACTGGTGCACAGTCAGGCAG+TGG | 0.578273 | 2_1:+16921505 | Msa0198340:CDS |
| ATGGCATCGATTACTTTAGG+AGG | 0.580157 | 2_1:-16921601 | None:intergenic |
| CATTCCAGCAACGGCACCAA+TGG | 0.580478 | 2_1:-16920777 | None:intergenic |
| TTACTTTGTTAATTCAAAGG+TGG | 0.582156 | 2_1:+16922352 | Msa0198340:three_prime_UTR |
| ACTACTCTATGTTACTGCTA+AGG | 0.583808 | 2_1:+16919018 | Msa0198340:CDS |
| GGCTAGGAATGGCGTATCAG+TGG | 0.588783 | 2_1:+16921366 | Msa0198340:CDS |
| GAACTTCAGGCACCTGGTGA+CGG | 0.589320 | 2_1:+16921409 | Msa0198340:CDS |
| ATGCAGCTATACCTCAGGCT+CGG | 0.589752 | 2_1:+16921826 | Msa0198340:intron |
| CAATGACATCCCTGCCGACA+AGG | 0.590191 | 2_1:+16920978 | Msa0198340:CDS |
| GTATGTGTAGGCTTCACAAA+AGG | 0.590418 | 2_1:+16919872 | Msa0198340:intron |
| CCCGGCATTGCTAACAGGAG+TGG | 0.596875 | 2_1:-16921578 | None:intergenic |
| GATGAAATAGATATAGGACT+TGG | 0.598998 | 2_1:-16921478 | None:intergenic |
| ACTGCTGGTCAGAATATGAA+TGG | 0.602374 | 2_1:+16920689 | Msa0198340:CDS |
| CGTTGATGAACTCATTCCCG+AGG | 0.604339 | 2_1:+16920654 | Msa0198340:CDS |
| ACTCTATGTTACTGCTAAGG+AGG | 0.607768 | 2_1:+16919021 | Msa0198340:CDS |
| TCTTTCAATCATGATGGGCA+AGG | 0.608612 | 2_1:+16920548 | Msa0198340:CDS |
| AATACTCTCTCAGCCAAGCA+AGG | 0.617603 | 2_1:+16922191 | Msa0198340:three_prime_UTR |
| CAAAATACCTGACGCCAGCA+TGG | 0.618733 | 2_1:-16921626 | None:intergenic |
| CGATTCAGTCATTCCAGCAA+CGG | 0.622512 | 2_1:-16920786 | None:intergenic |
| AGGACTTGGATGACCAGAGG+AGG | 0.630995 | 2_1:-16921464 | None:intergenic |
| ACCTCAAAAGACATCAAATG+TGG | 0.632234 | 2_1:-16919938 | None:intergenic |
| ATGAAGCCGCCACTGCTTGG+GGG | 0.632707 | 2_1:+16920719 | Msa0198340:CDS |
| CCAGCAACGGCACCAATGGT+GGG | 0.634359 | 2_1:-16920773 | None:intergenic |
| GGACTTGGATGACCAGAGGA+GGG | 0.638831 | 2_1:-16921463 | None:intergenic |
| AAGGATGCTTTCCGAGCCTG+AGG | 0.641286 | 2_1:-16921837 | None:intergenic |
| GCATTGCTAACAGGAGTGGT+GGG | 0.641442 | 2_1:-16921574 | None:intergenic |
| TTCAATCATGATGGGCAAGG+CGG | 0.653055 | 2_1:+16920551 | Msa0198340:CDS |
| GATGGATCATGCAAACACTC+TGG | 0.653555 | 2_1:+16919064 | Msa0198340:CDS |
| GTGTACTGCTTCATAATACA+CGG | 0.660722 | 2_1:+16922140 | Msa0198340:exon |
| CCAACTTACCATCTTCTATG+CGG | 0.674088 | 2_1:+16920939 | Msa0198340:CDS |
| ATGGTGGGAACAGGTGATTG+AGG | 0.679435 | 2_1:-16920758 | None:intergenic |
| AAAATGGTGAGAGATTTCAT+GGG | 0.682366 | 2_1:+16918974 | Msa0198340:exon |
| CTTGGATGACCAGAGGAGGG+TGG | 0.682495 | 2_1:-16921460 | None:intergenic |
| TATAGGACTTGGATGACCAG+AGG | 0.688185 | 2_1:-16921467 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTATTTTATTTTAATTTG+AGG | - | chr2_1:16920409-16920428 | None:intergenic | 10.0% |
| !! | GTATTCATTTATTTATTTAT+AGG | - | chr2_1:16921031-16921050 | None:intergenic | 10.0% |
| !! | TAAATAAATAAATGAATACA+AGG | + | chr2_1:16921032-16921051 | Msa0198340:intron | 10.0% |
| !!! | ATTTTGTTTATTGAAATATT+TGG | + | chr2_1:16921681-16921700 | Msa0198340:intron | 10.0% |
| !! | AGAAAAGAAAGAAAATTAAA+AGG | - | chr2_1:16918904-16918923 | None:intergenic | 15.0% |
| !! | CTTCATAAAATAAACAAAAT+TGG | - | chr2_1:16919338-16919357 | None:intergenic | 15.0% |
| !! | CGTTAAATTAAAGTAAAATA+AGG | + | chr2_1:16920284-16920303 | Msa0198340:intron | 15.0% |
| !!! | TAATTTTATGATTGACTTTT+AGG | + | chr2_1:16920827-16920846 | Msa0198340:intron | 15.0% |
| !! | AAGAAATAAAATATGAATTG+TGG | - | chr2_1:16921066-16921085 | None:intergenic | 15.0% |
| !! | AGAAAGATAGAAACAAAAAA+CGG | - | chr2_1:16919118-16919137 | None:intergenic | 20.0% |
| !! | CTTGTATAAGATATTCATTA+AGG | + | chr2_1:16919363-16919382 | Msa0198340:intron | 20.0% |
| !!! | TTCAAATTCAACTTTTGTAA+CGG | - | chr2_1:16919517-16919536 | None:intergenic | 20.0% |
| !! | TAAAGGTTAAAATCAATTGT+AGG | + | chr2_1:16919625-16919644 | Msa0198340:intron | 20.0% |
| !!! | AGAATTGATTTTGAAATGTT+CGG | - | chr2_1:16919722-16919741 | None:intergenic | 20.0% |
| !! | AATAACAAACAATCAATAGA+GGG | - | chr2_1:16920518-16920537 | None:intergenic | 20.0% |
| !! | TAATAACAAACAATCAATAG+AGG | - | chr2_1:16920519-16920538 | None:intergenic | 20.0% |
| !! | TTTATTTATTTATAGGCAGA+AGG | - | chr2_1:16921024-16921043 | None:intergenic | 20.0% |
| !! | TAAATGAATACAAGGTATAA+AGG | + | chr2_1:16921040-16921059 | Msa0198340:intron | 20.0% |
| !!! | GTTTTACTTTTATCAAGAAA+AGG | - | chr2_1:16921906-16921925 | None:intergenic | 20.0% |
| !!! | AAAAGTAATTTGTGTAGAAA+GGG | - | chr2_1:16921957-16921976 | None:intergenic | 20.0% |
| !!! | AAAAAGTAATTTGTGTAGAA+AGG | - | chr2_1:16921958-16921977 | None:intergenic | 20.0% |
| !!! | TCTTTTAAATAGTTTCCTAA+GGG | - | chr2_1:16922230-16922249 | None:intergenic | 20.0% |
| !!! | TTCTTTTAAATAGTTTCCTA+AGG | - | chr2_1:16922231-16922250 | None:intergenic | 20.0% |
| !!! | CTTTTACTTTGTTAATTCAA+AGG | + | chr2_1:16922349-16922368 | Msa0198340:three_prime_UTR | 20.0% |
| !!! | TCTTTGATTTGTTTGGTTAA+CGG | + | chr2_1:16919163-16919182 | Msa0198340:intron | 25.0% |
| !!! | TCATGAGTGTTTAATTTGAT+TGG | + | chr2_1:16919218-16919237 | Msa0198340:intron | 25.0% |
| ! | GTGTGTTAAATTTGTAATTC+CGG | + | chr2_1:16919288-16919307 | Msa0198340:intron | 25.0% |
| ! | TGTGTTAAATTTGTAATTCC+GGG | + | chr2_1:16919289-16919308 | Msa0198340:intron | 25.0% |
| ! | ACATATGTCTCATATAAAAG+TGG | + | chr2_1:16919589-16919608 | Msa0198340:intron | 25.0% |
| !!! | GATATGATTAGTTTCACTTT+TGG | - | chr2_1:16919770-16919789 | None:intergenic | 25.0% |
| !! | TTTTATCCCTTAAAGTTTAG+TGG | + | chr2_1:16919807-16919826 | Msa0198340:intron | 25.0% |
| ! | TTTATCCCTTAAAGTTTAGT+GGG | + | chr2_1:16919808-16919827 | Msa0198340:intron | 25.0% |
| ! | ATAAAACCAGCAGATATTAT+GGG | - | chr2_1:16919998-16920017 | None:intergenic | 25.0% |
| !!! | TGTGACTTTTTTTACATTGA+CGG | + | chr2_1:16920245-16920264 | Msa0198340:intron | 25.0% |
| ! | TAGAAATCTTTCAATCATGA+TGG | + | chr2_1:16920542-16920561 | Msa0198340:intron | 25.0% |
| ! | AGAAATCTTTCAATCATGAT+GGG | + | chr2_1:16920543-16920562 | Msa0198340:intron | 25.0% |
| ! | TAATAACTCAATACTGCAAA+TGG | - | chr2_1:16921747-16921766 | None:intergenic | 25.0% |
| ! | ACACAATACTAAATGATAAG+AGG | - | chr2_1:16922069-16922088 | None:intergenic | 25.0% |
| ! | TTACTTTGTTAATTCAAAGG+TGG | + | chr2_1:16922352-16922371 | Msa0198340:three_prime_UTR | 25.0% |
| !!! | TGTTGATGATTTTGTGAAGA+AGG | + | chr2_1:16918928-16918947 | Msa0198340:five_prime_UTR | 30.0% |
| AAAATGGTGAGAGATTTCAT+GGG | + | chr2_1:16918974-16918993 | Msa0198340:exon | 30.0% | |
| AAGTACTTTCCAATCATGTT+TGG | + | chr2_1:16919088-16919107 | Msa0198340:intron | 30.0% | |
| !! | TGCAACTTCTTTGATTTGTT+TGG | + | chr2_1:16919156-16919175 | Msa0198340:intron | 30.0% |
| !! | TGAGTGTTTAATTTGATTGG+TGG | + | chr2_1:16919221-16919240 | Msa0198340:intron | 30.0% |
| ! | AGTTGACAACAAATTTTTCC+CGG | - | chr2_1:16919310-16919329 | None:intergenic | 30.0% |
| ATCAGTTTGACAAAATTAGG+TGG | - | chr2_1:16919453-16919472 | None:intergenic | 30.0% | |
| ! | CCTAATTTTGTCAAACTGAT+CGG | + | chr2_1:16919453-16919472 | Msa0198340:intron | 30.0% |
| ! | CTAATTTTGTCAAACTGATC+GGG | + | chr2_1:16919454-16919473 | Msa0198340:intron | 30.0% |
| ! | GTGGATTGAACGATAAATAA+AGG | + | chr2_1:16919608-16919627 | Msa0198340:intron | 30.0% |
| TTATCCCTTAAAGTTTAGTG+GGG | + | chr2_1:16919809-16919828 | Msa0198340:intron | 30.0% | |
| AATTCCCCACTAAACTTTAA+GGG | - | chr2_1:16919816-16919835 | None:intergenic | 30.0% | |
| TAATTCCCCACTAAACTTTA+AGG | - | chr2_1:16919817-16919836 | None:intergenic | 30.0% | |
| CATAAAACCAGCAGATATTA+TGG | - | chr2_1:16919999-16920018 | None:intergenic | 30.0% | |
| ! | AATTTAAAGCCTAAACAGCA+CGG | - | chr2_1:16920090-16920109 | None:intergenic | 30.0% |
| TTAATGATCGACGATTATGA+TGG | + | chr2_1:16920214-16920233 | Msa0198340:intron | 30.0% | |
| GCTTATGAACAAGTAACATT+TGG | + | chr2_1:16920314-16920333 | Msa0198340:intron | 30.0% | |
| !! | GCTTTAATTTTTCACGTACT+CGG | + | chr2_1:16920573-16920592 | Msa0198340:CDS | 30.0% |
| ! | TTTTGCGTTAACCAAGTTAT+TGG | - | chr2_1:16921277-16921296 | None:intergenic | 30.0% |
| ATTAAGCTTGACTATGGTAA+AGG | - | chr2_1:16921307-16921326 | None:intergenic | 30.0% | |
| GATGAAATAGATATAGGACT+TGG | - | chr2_1:16921481-16921500 | None:intergenic | 30.0% | |
| GTATGCGATGAAATAGATAT+AGG | - | chr2_1:16921487-16921506 | None:intergenic | 30.0% | |
| ATATCTATTTCATCGCATAC+TGG | + | chr2_1:16921487-16921506 | Msa0198340:CDS | 30.0% | |
| CTAACTGCAATAATGAGAAA+TGG | - | chr2_1:16921658-16921677 | None:intergenic | 30.0% | |
| !! | CTTTTCTAAAAATCGAGTCA+AGG | - | chr2_1:16921859-16921878 | None:intergenic | 30.0% |
| TCATTTAGTATTGTGTTTGC+AGG | + | chr2_1:16922073-16922092 | Msa0198340:intron | 30.0% | |
| CATTTAGTATTGTGTTTGCA+GGG | + | chr2_1:16922074-16922093 | Msa0198340:intron | 30.0% | |
| ! | GATTTCTTGTTATGGTTGTA+TGG | - | chr2_1:16922114-16922133 | None:intergenic | 30.0% |
| ACTCTTCAGATTTCTTGTTA+TGG | - | chr2_1:16922122-16922141 | None:intergenic | 30.0% | |
| TAAATAGTTTCCTAAGGGTA+GGG | - | chr2_1:16922225-16922244 | None:intergenic | 30.0% | |
| TTAAATAGTTTCCTAAGGGT+AGG | - | chr2_1:16922226-16922245 | None:intergenic | 30.0% | |
| ! | CATTTTCAGAGACAAAGGAA+AGG | - | chr2_1:16918960-16918979 | None:intergenic | 35.0% |
| ! | CTTTCCTTTGTCTCTGAAAA+TGG | + | chr2_1:16918958-16918977 | Msa0198340:exon | 35.0% |
| GAAAATGGTGAGAGATTTCA+TGG | + | chr2_1:16918973-16918992 | Msa0198340:exon | 35.0% | |
| ACTACTCTATGTTACTGCTA+AGG | + | chr2_1:16919018-16919037 | Msa0198340:CDS | 35.0% | |
| ! | GAAATCAACCATGATGATGA+TGG | + | chr2_1:16919046-16919065 | Msa0198340:CDS | 35.0% |
| AACGGTTATCCAAACATGAT+TGG | - | chr2_1:16919100-16919119 | None:intergenic | 35.0% | |
| CATTAAGGTTAGTGCATGTT+TGG | + | chr2_1:16919378-16919397 | Msa0198340:intron | 35.0% | |
| CCGATCAGTTTGACAAAATT+AGG | - | chr2_1:16919456-16919475 | None:intergenic | 35.0% | |
| ! | ACCACATTTGATGTCTTTTG+AGG | + | chr2_1:16919937-16919956 | Msa0198340:CDS | 35.0% |
| ACCTCAAAAGACATCAAATG+TGG | - | chr2_1:16919941-16919960 | None:intergenic | 35.0% | |
| ! | TTTTACATTGACGGTGTCTA+TGG | + | chr2_1:16920254-16920273 | Msa0198340:intron | 35.0% |
| CTAATCAGATTAGAACACAC+TGG | - | chr2_1:16920345-16920364 | None:intergenic | 35.0% | |
| CAAACAATCAATAGAGGGAA+GGG | - | chr2_1:16920513-16920532 | None:intergenic | 35.0% | |
| ACAAACAATCAATAGAGGGA+AGG | - | chr2_1:16920514-16920533 | None:intergenic | 35.0% | |
| ATCTTCACATCATGTTGTAC+AGG | - | chr2_1:16920602-16920621 | None:intergenic | 35.0% | |
| CGAAACTGAATTCGTTTGAT+TGG | - | chr2_1:16920636-16920655 | None:intergenic | 35.0% | |
| CAGTTACAAAATGATTCCTC+GGG | - | chr2_1:16920673-16920692 | None:intergenic | 35.0% | |
| GCAGTTACAAAATGATTCCT+CGG | - | chr2_1:16920674-16920693 | None:intergenic | 35.0% | |
| ! | AGGAATCATTTTGTAACTGC+TGG | + | chr2_1:16920674-16920693 | Msa0198340:CDS | 35.0% |
| AACAAAGAGAGATACCTTGT+CGG | - | chr2_1:16920995-16921014 | None:intergenic | 35.0% | |
| !! | CAATGTAATGTTGGTGATCA+AGG | - | chr2_1:16921099-16921118 | None:intergenic | 35.0% |
| CTTGATCACCAACATTACAT+TGG | + | chr2_1:16921097-16921116 | Msa0198340:intron | 35.0% | |
| CTTGGTTAACGCAAAAAACT+TGG | + | chr2_1:16921281-16921300 | Msa0198340:intron | 35.0% | |
| ACCATAGTCAAGCTTAATTG+TGG | + | chr2_1:16921309-16921328 | Msa0198340:intron | 35.0% | |
| TTTCTCGCAGTTAAAACAAC+TGG | + | chr2_1:16921547-16921566 | Msa0198340:CDS | 35.0% | |
| !! | GTAATGGCATCGATTACTTT+AGG | - | chr2_1:16921607-16921626 | None:intergenic | 35.0% |
| !! | TCGATTTTTAGAAAAGCGCA+AGG | + | chr2_1:16921863-16921882 | Msa0198340:CDS | 35.0% |
| TAGTTACCATCCTAGACTTA+AGG | + | chr2_1:16921927-16921946 | Msa0198340:intron | 35.0% | |
| AGTTACCATCCTAGACTTAA+GGG | + | chr2_1:16921928-16921947 | Msa0198340:intron | 35.0% | |
| TCATTACCCCTCAATTTGAA+GGG | - | chr2_1:16921987-16922006 | None:intergenic | 35.0% | |
| GTGTACTGCTTCATAATACA+CGG | + | chr2_1:16922140-16922159 | Msa0198340:exon | 35.0% | |
| ! | CGACAATGCTGACAATTTTT+AGG | - | chr2_1:16922275-16922294 | None:intergenic | 35.0% |
| CTCAAACACCATAACTTTAG+TGG | + | chr2_1:16922319-16922338 | Msa0198340:three_prime_UTR | 35.0% | |
| ACCATAACTTTAGTGGTGTA+GGG | + | chr2_1:16922326-16922345 | Msa0198340:three_prime_UTR | 35.0% | |
| TTGTTAATTCAAAGGTGGAC+TGG | + | chr2_1:16922357-16922376 | Msa0198340:three_prime_UTR | 35.0% | |
| ! | CTCACCATTTTCAGAGACAA+AGG | - | chr2_1:16918965-16918984 | None:intergenic | 40.0% |
| ACTCTATGTTACTGCTAAGG+AGG | + | chr2_1:16919021-16919040 | Msa0198340:CDS | 40.0% | |
| TGCATGATCCATCATCATCA+TGG | - | chr2_1:16919057-16919076 | None:intergenic | 40.0% | |
| CTCATGAATGTTTGCATGCA+TGG | - | chr2_1:16919205-16919224 | None:intergenic | 40.0% | |
| !! | AGTGGGGAATTAACTTGTTC+TGG | + | chr2_1:16919825-16919844 | Msa0198340:intron | 40.0% |
| ! | TTGTGTTGATGGATGCTTTG+TGG | + | chr2_1:16919849-16919868 | Msa0198340:intron | 40.0% |
| ! | TGTGTTGATGGATGCTTTGT+GGG | + | chr2_1:16919850-16919869 | Msa0198340:intron | 40.0% |
| GTATGTGTAGGCTTCACAAA+AGG | + | chr2_1:16919872-16919891 | Msa0198340:intron | 40.0% | |
| TGTAGGCTTCACAAAAGGTT+CGG | + | chr2_1:16919877-16919896 | Msa0198340:intron | 40.0% | |
| GCAGATACTTTGTTGGAGAA+GGG | - | chr2_1:16919914-16919933 | None:intergenic | 40.0% | |
| AGCAGATACTTTGTTGGAGA+AGG | - | chr2_1:16919915-16919934 | None:intergenic | 40.0% | |
| TGGTTGAGCAGATACTTTGT+TGG | - | chr2_1:16919921-16919940 | None:intergenic | 40.0% | |
| GGGATCAGATAAGATCTTTG+TGG | - | chr2_1:16919978-16919997 | None:intergenic | 40.0% | |
| TCTGATCCCATAATATCTGC+TGG | + | chr2_1:16919989-16920008 | Msa0198340:CDS | 40.0% | |
| TTACTAGAGTCAAATGCGTC+TGG | - | chr2_1:16920025-16920044 | None:intergenic | 40.0% | |
| AATCAATAGAGGGAAGGGAA+GGG | - | chr2_1:16920508-16920527 | None:intergenic | 40.0% | |
| !! | TCTTTCAATCATGATGGGCA+AGG | + | chr2_1:16920548-16920567 | Msa0198340:CDS | 40.0% |
| ACTGCTGGTCAGAATATGAA+TGG | + | chr2_1:16920689-16920708 | Msa0198340:CDS | 40.0% | |
| ! | AAGATGGTAAGTTGGGAAGA+AGG | - | chr2_1:16920934-16920953 | None:intergenic | 40.0% |
| CGCATAGAAGATGGTAAGTT+GGG | - | chr2_1:16920941-16920960 | None:intergenic | 40.0% | |
| CCAACTTACCATCTTCTATG+CGG | + | chr2_1:16920939-16920958 | Msa0198340:CDS | 40.0% | |
| CAACTTACCATCTTCTATGC+GGG | + | chr2_1:16920940-16920959 | Msa0198340:CDS | 40.0% | |
| ATGGGGAAAAAATGGTTGAG+AGG | + | chr2_1:16921179-16921198 | Msa0198340:intron | 40.0% | |
| GCCACAATTAAGCTTGACTA+TGG | - | chr2_1:16921313-16921332 | None:intergenic | 40.0% | |
| ! | AATTGTGGCACTGTTTCTTC+AGG | + | chr2_1:16921324-16921343 | Msa0198340:intron | 40.0% |
| !! | ATGGCATCGATTACTTTAGG+AGG | - | chr2_1:16921604-16921623 | None:intergenic | 40.0% |
| ! | CTTTTATGCAGCTATACCTC+AGG | + | chr2_1:16921821-16921840 | Msa0198340:intron | 40.0% |
| !! | TTTTAGAAAAGCGCAAGGAG+AGG | + | chr2_1:16921868-16921887 | Msa0198340:CDS | 40.0% |
| ! | TTTTGTGCCCCTTCAAATTG+AGG | + | chr2_1:16921976-16921995 | Msa0198340:intron | 40.0% |
| TTTGTGCCCCTTCAAATTGA+GGG | + | chr2_1:16921977-16921996 | Msa0198340:intron | 40.0% | |
| CATTACCCCTCAATTTGAAG+GGG | - | chr2_1:16921986-16922005 | None:intergenic | 40.0% | |
| CTCATTACCCCTCAATTTGA+AGG | - | chr2_1:16921988-16922007 | None:intergenic | 40.0% | |
| CTTCAAATTGAGGGGTAATG+AGG | + | chr2_1:16921986-16922005 | Msa0198340:intron | 40.0% | |
| TAGGGACTATTATCCTTGCT+TGG | - | chr2_1:16922207-16922226 | None:intergenic | 40.0% | |
| CACCATAACTTTAGTGGTGT+AGG | + | chr2_1:16922325-16922344 | Msa0198340:three_prime_UTR | 40.0% | |
| CTATGTTACTGCTAAGGAGG+AGG | + | chr2_1:16919024-16919043 | Msa0198340:CDS | 45.0% | |
| GATGGATCATGCAAACACTC+TGG | + | chr2_1:16919064-16919083 | Msa0198340:CDS | 45.0% | |
| !! | CTTGTTCTGGCTTGTGTTGA+TGG | + | chr2_1:16919838-16919857 | Msa0198340:intron | 45.0% |
| GATGCTTTGTGGGTATGTGT+AGG | + | chr2_1:16919860-16919879 | Msa0198340:intron | 45.0% | |
| GTAGGCTTCACAAAAGGTTC+GGG | + | chr2_1:16919878-16919897 | Msa0198340:intron | 45.0% | |
| AAAGGGTAGCATCAAACCTG+AGG | - | chr2_1:16920067-16920086 | None:intergenic | 45.0% | |
| AAGCCTAAACAGCACGGAAA+GGG | - | chr2_1:16920084-16920103 | None:intergenic | 45.0% | |
| AAAGCCTAAACAGCACGGAA+AGG | - | chr2_1:16920085-16920104 | None:intergenic | 45.0% | |
| CAATCAATAGAGGGAAGGGA+AGG | - | chr2_1:16920509-16920528 | None:intergenic | 45.0% | |
| !! | TTCAATCATGATGGGCAAGG+CGG | + | chr2_1:16920551-16920570 | Msa0198340:CDS | 45.0% |
| CGATTCAGTCATTCCAGCAA+CGG | - | chr2_1:16920789-16920808 | None:intergenic | 45.0% | |
| CCGCATAGAAGATGGTAAGT+TGG | - | chr2_1:16920942-16920961 | None:intergenic | 45.0% | |
| !! | GTTGGTGATCAAGGTCAAGT+TGG | - | chr2_1:16921090-16921109 | None:intergenic | 45.0% |
| CACTCGGACCAATGTAATGT+TGG | - | chr2_1:16921108-16921127 | None:intergenic | 45.0% | |
| CATTGGTCCGAGTGAAAAAC+TGG | + | chr2_1:16921114-16921133 | Msa0198340:intron | 45.0% | |
| TCCGAGTGAAAAACTGGACT+CGG | + | chr2_1:16921120-16921139 | Msa0198340:intron | 45.0% | |
| ! | TCCGAGTCCAGTTTTTCACT+CGG | - | chr2_1:16921124-16921143 | None:intergenic | 45.0% |
| GAATCCGAGACCTAGCTTAA+GGG | - | chr2_1:16921148-16921167 | None:intergenic | 45.0% | |
| TGAATCCGAGACCTAGCTTA+AGG | - | chr2_1:16921149-16921168 | None:intergenic | 45.0% | |
| ! | AGACTAGTCATCGGCAAAGT+CGG | + | chr2_1:16921242-16921261 | Msa0198340:intron | 45.0% |
| ! | AAGCTATCCTGTTGTTGGCT+AGG | + | chr2_1:16921350-16921369 | Msa0198340:CDS | 45.0% |
| ! | ATCCTGTTGTTGGCTAGGAA+TGG | + | chr2_1:16921355-16921374 | Msa0198340:CDS | 45.0% |
| CATAGCACAGACAGAACTTC+AGG | + | chr2_1:16921396-16921415 | Msa0198340:CDS | 45.0% | |
| ! | TGCATTTGCAGGTTGACTCA+CGG | - | chr2_1:16921440-16921459 | None:intergenic | 45.0% |
| TATAGGACTTGGATGACCAG+AGG | - | chr2_1:16921470-16921489 | None:intergenic | 45.0% | |
| ! | ATCGATTACTTTAGGAGGCC+CGG | - | chr2_1:16921599-16921618 | None:intergenic | 45.0% |
| AATCGATGCCATTACCATGC+TGG | + | chr2_1:16921612-16921631 | Msa0198340:CDS | 45.0% | |
| AAAGGGTTGCCCTTAAGTCT+AGG | - | chr2_1:16921940-16921959 | None:intergenic | 45.0% | |
| TTGTGCCCCTTCAAATTGAG+GGG | + | chr2_1:16921978-16921997 | Msa0198340:intron | 45.0% | |
| AATACTCTCTCAGCCAAGCA+AGG | + | chr2_1:16922191-16922210 | Msa0198340:three_prime_UTR | 45.0% | |
| GGATAATAGTCCCTACCCTT+AGG | + | chr2_1:16922212-16922231 | Msa0198340:three_prime_UTR | 45.0% | |
| GCCCTACACCACTAAAGTTA+TGG | - | chr2_1:16922330-16922349 | None:intergenic | 45.0% | |
| !! | CTACCCTTTCCGTGCTGTTT+AGG | + | chr2_1:16920078-16920097 | Msa0198340:intron | 50.0% |
| ! | CGTTGATGAACTCATTCCCG+AGG | + | chr2_1:16920654-16920673 | Msa0198340:CDS | 50.0% |
| AATATGAAGCCGCCACTGCT+TGG | + | chr2_1:16920716-16920735 | Msa0198340:CDS | 50.0% | |
| ATATGAAGCCGCCACTGCTT+GGG | + | chr2_1:16920717-16920736 | Msa0198340:CDS | 50.0% | |
| !! | GGTGATTGAGGTGCTGTAAC+AGG | - | chr2_1:16920749-16920768 | None:intergenic | 50.0% |
| ! | ATGGTGGGAACAGGTGATTG+AGG | - | chr2_1:16920761-16920780 | None:intergenic | 50.0% |
| CAATCACCTGTTCCCACCAT+TGG | + | chr2_1:16920761-16920780 | Msa0198340:CDS | 50.0% | |
| AGTTGGGAAGAAGGCAGAGA+TGG | - | chr2_1:16920925-16920944 | None:intergenic | 50.0% | |
| GACAGTACCCGCATAGAAGA+TGG | - | chr2_1:16920950-16920969 | None:intergenic | 50.0% | |
| AGAGAGATACCTTGTCGGCA+GGG | - | chr2_1:16920990-16921009 | None:intergenic | 50.0% | |
| AAGAGAGATACCTTGTCGGC+AGG | - | chr2_1:16920991-16921010 | None:intergenic | 50.0% | |
| GGATCCCTTAAGCTAGGTCT+CGG | + | chr2_1:16921141-16921160 | Msa0198340:intron | 50.0% | |
| !!! | CCATTTTTTCCCCATCCACG+AGG | - | chr2_1:16921174-16921193 | None:intergenic | 50.0% |
| CCTCGTGGATGGGGAAAAAA+TGG | + | chr2_1:16921171-16921190 | Msa0198340:intron | 50.0% | |
| !! | CCGATGACTAGTCTCTGTTC+GGG | - | chr2_1:16921236-16921255 | None:intergenic | 50.0% |
| ! | CCCGAACAGAGACTAGTCAT+CGG | + | chr2_1:16921233-16921252 | Msa0198340:intron | 50.0% |
| !! | GCCGATGACTAGTCTCTGTT+CGG | - | chr2_1:16921237-16921256 | None:intergenic | 50.0% |
| GGTGGATCGCACCAATAACT+TGG | + | chr2_1:16921263-16921282 | Msa0198340:intron | 50.0% | |
| GGCACAAGCTATCCTGTTGT+TGG | + | chr2_1:16921345-16921364 | Msa0198340:intron | 50.0% | |
| ! | GCATTTGCAGGTTGACTCAC+GGG | - | chr2_1:16921439-16921458 | None:intergenic | 50.0% |
| GCATTGCTAACAGGAGTGGT+GGG | - | chr2_1:16921577-16921596 | None:intergenic | 50.0% | |
| ACCACTCCTGTTAGCAATGC+CGG | + | chr2_1:16921577-16921596 | Msa0198340:CDS | 50.0% | |
| CAAAATACCTGACGCCAGCA+TGG | - | chr2_1:16921629-16921648 | None:intergenic | 50.0% | |
| ! | CATGCTGGCGTCAGGTATTT+TGG | + | chr2_1:16921627-16921646 | Msa0198340:intron | 50.0% |
| ATGCAGCTATACCTCAGGCT+CGG | + | chr2_1:16921826-16921845 | Msa0198340:intron | 50.0% | |
| GGTTGCCCTTAAGTCTAGGA+TGG | - | chr2_1:16921936-16921955 | None:intergenic | 50.0% | |
| ACACTCGCTACGCGCATGTT+TGG | - | chr2_1:16919485-16919504 | None:intergenic | 55.0% | |
| ACATGCGCGTAGCGAGTGTT+TGG | + | chr2_1:16919486-16919505 | Msa0198340:intron | 55.0% | |
| ACTCTCTGCTGCTGAACCTC+AGG | + | chr2_1:16920048-16920067 | Msa0198340:CDS | 55.0% | |
| TATGAAGCCGCCACTGCTTG+GGG | + | chr2_1:16920718-16920737 | Msa0198340:CDS | 55.0% | |
| ACAGGTATTCCCCCAAGCAG+TGG | - | chr2_1:16920731-16920750 | None:intergenic | 55.0% | |
| CATTCCAGCAACGGCACCAA+TGG | - | chr2_1:16920780-16920799 | None:intergenic | 55.0% | |
| CAATGACATCCCTGCCGACA+AGG | + | chr2_1:16920978-16920997 | Msa0198340:CDS | 55.0% | |
| GGACTCGGATCCCTTAAGCT+AGG | + | chr2_1:16921135-16921154 | Msa0198340:intron | 55.0% | |
| TCGGATTCAAGCCTCGTGGA+TGG | + | chr2_1:16921160-16921179 | Msa0198340:intron | 55.0% | |
| CGGATTCAAGCCTCGTGGAT+GGG | + | chr2_1:16921161-16921180 | Msa0198340:intron | 55.0% | |
| GGATTCAAGCCTCGTGGATG+GGG | + | chr2_1:16921162-16921181 | Msa0198340:intron | 55.0% | |
| CTAGTCTCTGTTCGGGAGCA+TGG | - | chr2_1:16921229-16921248 | None:intergenic | 55.0% | |
| CTAGTCATCGGCAAAGTCGG+TGG | + | chr2_1:16921245-16921264 | Msa0198340:intron | 55.0% | |
| CGCCATTCCTAGCCAACAAC+AGG | - | chr2_1:16921360-16921379 | None:intergenic | 55.0% | |
| GGCTAGGAATGGCGTATCAG+TGG | + | chr2_1:16921366-16921385 | Msa0198340:CDS | 55.0% | |
| CAGACAGAACTTCAGGCACC+TGG | + | chr2_1:16921403-16921422 | Msa0198340:CDS | 55.0% | |
| GAACTTCAGGCACCTGGTGA+CGG | + | chr2_1:16921409-16921428 | Msa0198340:CDS | 55.0% | |
| GGACTTGGATGACCAGAGGA+GGG | - | chr2_1:16921466-16921485 | None:intergenic | 55.0% | |
| AGGACTTGGATGACCAGAGG+AGG | - | chr2_1:16921467-16921486 | None:intergenic | 55.0% | |
| TCGCATACTGGTGCACAGTC+AGG | + | chr2_1:16921499-16921518 | Msa0198340:CDS | 55.0% | |
| GGCATTGCTAACAGGAGTGG+TGG | - | chr2_1:16921578-16921597 | None:intergenic | 55.0% | |
| CCACTCCTGTTAGCAATGCC+GGG | + | chr2_1:16921578-16921597 | Msa0198340:CDS | 55.0% | |
| ACCTGACGCCAGCATGGTAA+TGG | - | chr2_1:16921623-16921642 | None:intergenic | 55.0% | |
| AAGGATGCTTTCCGAGCCTG+AGG | - | chr2_1:16921840-16921859 | None:intergenic | 55.0% | |
| ATGAAGCCGCCACTGCTTGG+GGG | + | chr2_1:16920719-16920738 | Msa0198340:CDS | 60.0% | |
| GGTATTCCCCCAAGCAGTGG+CGG | - | chr2_1:16920728-16920747 | None:intergenic | 60.0% | |
| ! | ACGGCACCAATGGTGGGAAC+AGG | - | chr2_1:16920770-16920789 | None:intergenic | 60.0% |
| CCAGCAACGGCACCAATGGT+GGG | - | chr2_1:16920776-16920795 | None:intergenic | 60.0% | |
| TCCAGCAACGGCACCAATGG+TGG | - | chr2_1:16920777-16920796 | None:intergenic | 60.0% | |
| GGTCTCGGATTCAAGCCTCG+TGG | + | chr2_1:16921156-16921175 | Msa0198340:intron | 60.0% | |
| GAGAGGATAGACCCCGCTGA+AGG | + | chr2_1:16921196-16921215 | Msa0198340:intron | 60.0% | |
| AGGATAGACCCCGCTGAAGG+TGG | + | chr2_1:16921199-16921218 | Msa0198340:intron | 60.0% | |
| ATGGCTGACCACCTTCAGCG+GGG | - | chr2_1:16921210-16921229 | None:intergenic | 60.0% | |
| CATGGCTGACCACCTTCAGC+GGG | - | chr2_1:16921211-16921230 | None:intergenic | 60.0% | |
| GCATGGCTGACCACCTTCAG+CGG | - | chr2_1:16921212-16921231 | None:intergenic | 60.0% | |
| GAGGAGGGTGGTGCATTTGC+AGG | - | chr2_1:16921451-16921470 | None:intergenic | 60.0% | |
| GCAAATGCACCACCCTCCTC+TGG | + | chr2_1:16921451-16921470 | Msa0198340:CDS | 60.0% | |
| CTTGGATGACCAGAGGAGGG+TGG | - | chr2_1:16921463-16921482 | None:intergenic | 60.0% | |
| ACTGGTGCACAGTCAGGCAG+TGG | + | chr2_1:16921505-16921524 | Msa0198340:CDS | 60.0% | |
| CCCGGCATTGCTAACAGGAG+TGG | - | chr2_1:16921581-16921600 | None:intergenic | 60.0% | |
| GCCATTACCATGCTGGCGTC+AGG | + | chr2_1:16921619-16921638 | Msa0198340:CDS | 60.0% | |
| !! | CCCACCATTGGTGCCGTTGC+TGG | + | chr2_1:16920773-16920792 | Msa0198340:CDS | 65.0% |
| GGAGGCCCGGCATTGCTAAC+AGG | - | chr2_1:16921586-16921605 | None:intergenic | 65.0% | |
| CTCACGGGCACACCGTCACC+AGG | - | chr2_1:16921424-16921443 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 16918894 | 16922394 | 16918894 | ID=Msa0198340;Name=Msa0198340 |
| chr2_1 | mRNA | 16918894 | 16922394 | 16918894 | ID=Msa0198340-mRNA-1;Parent=Msa0198340;Name=Msa0198340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=83|1|1|1|1|1|7|239|353 |
| chr2_1 | exon | 16918894 | 16919085 | 16918894 | ID=Msa0198340-mRNA-1:exon:7030;Parent=Msa0198340-mRNA-1 |
| chr2_1 | exon | 16919882 | 16920069 | 16919882 | ID=Msa0198340-mRNA-1:exon:7031;Parent=Msa0198340-mRNA-1 |
| chr2_1 | exon | 16920545 | 16920807 | 16920545 | ID=Msa0198340-mRNA-1:exon:7032;Parent=Msa0198340-mRNA-1 |
| chr2_1 | exon | 16920912 | 16920999 | 16920912 | ID=Msa0198340-mRNA-1:exon:7033;Parent=Msa0198340-mRNA-1 |
| chr2_1 | exon | 16921346 | 16921640 | 16921346 | ID=Msa0198340-mRNA-1:exon:7034;Parent=Msa0198340-mRNA-1 |
| chr2_1 | exon | 16921832 | 16921889 | 16921832 | ID=Msa0198340-mRNA-1:exon:7035;Parent=Msa0198340-mRNA-1 |
| chr2_1 | exon | 16922095 | 16922394 | 16922095 | ID=Msa0198340-mRNA-1:exon:7036;Parent=Msa0198340-mRNA-1 |
| chr2_1 | five_prime_UTR | 16918894 | 16918976 | 16918894 | ID=Msa0198340-mRNA-1:five_prime_utr;Parent=Msa0198340-mRNA-1 |
| chr2_1 | CDS | 16918977 | 16919085 | 16918977 | ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1 |
| chr2_1 | CDS | 16919882 | 16920069 | 16919882 | ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1 |
| chr2_1 | CDS | 16920545 | 16920807 | 16920545 | ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1 |
| chr2_1 | CDS | 16920912 | 16920999 | 16920912 | ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1 |
| chr2_1 | CDS | 16921346 | 16921640 | 16921346 | ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1 |
| chr2_1 | CDS | 16921832 | 16921889 | 16921832 | ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1 |
| chr2_1 | CDS | 16922095 | 16922155 | 16922095 | ID=Msa0198340-mRNA-1:cds;Parent=Msa0198340-mRNA-1 |
| chr2_1 | three_prime_UTR | 16922156 | 16922394 | 16922156 | ID=Msa0198340-mRNA-1:three_prime_utr;Parent=Msa0198340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
