Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155380 | AQK89649.1 | 64.103 | 78 | 18 | 1 | 2 | 79 | 236 | 303 | 2.05e-21 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155380 | sp|P51139|MSK3_MEDSA | 62.821 | 78 | 5 | 1 | 2 | 79 | 238 | 291 | 3.80e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155380 | A0A3L6DJ22 | 64.103 | 78 | 18 | 1 | 2 | 79 | 236 | 303 | 9.79e-22 | 97.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0155380 | Msa0276310 | 0.868097 | 8.406824e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155380 | MtrunA17_Chr7g0270371 | 62.821 | 78 | 5 | 1 | 2 | 79 | 239 | 292 | 2.82e-24 | 94.7 |
| Msa0155380 | MtrunA17_Chr8g0350311 | 60.256 | 78 | 7 | 1 | 2 | 79 | 303 | 356 | 1.67e-23 | 92.8 |
| Msa0155380 | MtrunA17_Chr2g0277011 | 60.256 | 78 | 7 | 1 | 2 | 79 | 254 | 307 | 3.77e-23 | 91.7 |
| Msa0155380 | MtrunA17_Chr7g0246591 | 60.256 | 78 | 7 | 1 | 2 | 79 | 305 | 358 | 5.37e-23 | 91.7 |
| Msa0155380 | MtrunA17_Chr1g0194201 | 60.256 | 78 | 7 | 1 | 2 | 79 | 239 | 292 | 6.61e-23 | 90.9 |
| Msa0155380 | MtrunA17_Chr1g0193081 | 60.759 | 79 | 7 | 1 | 2 | 80 | 239 | 293 | 1.52e-22 | 90.1 |
| Msa0155380 | MtrunA17_Chr2g0320011 | 58.974 | 78 | 8 | 1 | 2 | 79 | 252 | 305 | 5.17e-22 | 88.6 |
| Msa0155380 | MtrunA17_Chr2g0284091 | 56.410 | 78 | 10 | 1 | 2 | 79 | 204 | 257 | 4.19e-21 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155380 | AT5G14640.1 | 62.821 | 78 | 5 | 1 | 2 | 79 | 238 | 291 | 5.05e-24 | 94.4 |
| Msa0155380 | AT5G14640.2 | 62.821 | 78 | 5 | 1 | 2 | 79 | 238 | 291 | 5.05e-24 | 94.4 |
| Msa0155380 | AT5G26751.1 | 60.256 | 78 | 7 | 1 | 2 | 79 | 233 | 286 | 4.17e-23 | 91.7 |
| Msa0155380 | AT3G05840.2 | 60.256 | 78 | 7 | 1 | 2 | 79 | 237 | 290 | 4.29e-23 | 91.7 |
| Msa0155380 | AT3G05840.1 | 60.256 | 78 | 7 | 1 | 2 | 79 | 237 | 290 | 4.29e-23 | 91.7 |
| Msa0155380 | AT1G57870.1 | 60.256 | 78 | 7 | 1 | 2 | 79 | 246 | 299 | 4.98e-23 | 91.7 |
| Msa0155380 | AT1G57870.4 | 60.256 | 78 | 7 | 1 | 2 | 79 | 246 | 299 | 4.98e-23 | 91.7 |
| Msa0155380 | AT1G57870.2 | 60.256 | 78 | 7 | 1 | 2 | 79 | 246 | 299 | 4.98e-23 | 91.7 |
| Msa0155380 | AT1G57870.3 | 60.256 | 78 | 7 | 1 | 2 | 79 | 246 | 299 | 5.62e-23 | 91.7 |
| Msa0155380 | AT1G09840.3 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.7 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.10 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.6 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.4 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.1 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.9 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.5 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.8 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.2 | 58.974 | 78 | 8 | 1 | 2 | 79 | 247 | 300 | 1.53e-22 | 90.5 |
| Msa0155380 | AT1G09840.11 | 58.974 | 78 | 8 | 1 | 2 | 79 | 120 | 173 | 3.12e-22 | 88.2 |
| Msa0155380 | AT4G18710.1 | 57.692 | 78 | 9 | 1 | 2 | 79 | 204 | 257 | 9.81e-22 | 87.8 |
| Msa0155380 | AT2G30980.1 | 57.692 | 78 | 9 | 1 | 2 | 79 | 236 | 289 | 1.20e-21 | 87.8 |
| Msa0155380 | AT1G06390.2 | 57.692 | 78 | 9 | 1 | 2 | 79 | 234 | 287 | 1.93e-21 | 87.4 |
| Msa0155380 | AT1G06390.1 | 57.692 | 78 | 9 | 1 | 2 | 79 | 234 | 287 | 1.93e-21 | 87.4 |
| Msa0155380 | AT4G18710.2 | 56.962 | 79 | 10 | 1 | 2 | 80 | 198 | 252 | 4.64e-21 | 84.7 |
| Msa0155380 | AT4G00720.1 | 56.410 | 78 | 10 | 1 | 2 | 79 | 302 | 355 | 4.80e-21 | 86.7 |
| Msa0155380 | AT3G61160.3 | 53.846 | 78 | 12 | 1 | 2 | 79 | 266 | 319 | 3.17e-20 | 83.6 |
| Msa0155380 | AT3G61160.6 | 53.846 | 78 | 12 | 1 | 2 | 79 | 273 | 326 | 3.35e-20 | 83.6 |
| Msa0155380 | AT3G61160.5 | 53.846 | 78 | 12 | 1 | 2 | 79 | 266 | 319 | 3.95e-20 | 83.6 |
| Msa0155380 | AT3G61160.4 | 53.846 | 78 | 12 | 1 | 2 | 79 | 266 | 319 | 4.71e-20 | 83.6 |
| Msa0155380 | AT3G61160.1 | 53.846 | 78 | 12 | 1 | 2 | 79 | 266 | 319 | 4.88e-20 | 83.6 |
| Msa0155380 | AT3G61160.2 | 53.846 | 78 | 12 | 1 | 2 | 79 | 273 | 326 | 4.99e-20 | 83.6 |
| Msa0155380 | AT2G46070.2 | 38.043 | 92 | 25 | 2 | 2 | 85 | 205 | 272 | 2.18e-12 | 61.6 |
| Msa0155380 | AT2G46070.1 | 38.043 | 92 | 25 | 2 | 2 | 85 | 205 | 272 | 2.42e-12 | 61.6 |
| Msa0155380 | AT2G46070.3 | 38.043 | 92 | 25 | 2 | 2 | 85 | 239 | 306 | 2.03e-11 | 59.3 |
| Msa0155380 | AT1G67580.1 | 43.939 | 66 | 35 | 2 | 3 | 67 | 570 | 634 | 4.51e-11 | 58.2 |
| Msa0155380 | AT1G67580.2 | 43.939 | 66 | 35 | 2 | 3 | 67 | 570 | 634 | 4.51e-11 | 58.2 |
Find 18 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTATCAGTCACTGTTTCC+TGG | 0.318560 | 1_4:-20660499 | Msa0155380:intron |
| TGGTCAGTTGGTTGCGTACT+TGG | 0.388547 | 1_4:-20660617 | Msa0155380:CDS |
| CATGGATGAGATTTGATTTG+AGG | 0.426647 | 1_4:+20660187 | None:intergenic |
| GTACACAAAAGCTAGTTAAC+TGG | 0.433946 | 1_4:+20660579 | None:intergenic |
| CCTTGATAATTTCCACAAGT+TGG | 0.452229 | 1_4:+20660461 | None:intergenic |
| CAAATCTCATCCATGACATA+AGG | 0.460919 | 1_4:-20660179 | Msa0155380:intron |
| AGAGCTCCTGAGCTTATATT+CGG | 0.474562 | 1_4:-20660671 | Msa0155380:CDS |
| CCAACTTGTGGAAATTATCA+AGG | 0.511188 | 1_4:-20660461 | Msa0155380:intron |
| ACACCACAACCATTGACATC+TGG | 0.523107 | 1_4:-20660637 | Msa0155380:CDS |
| TCACTGTTTCCTGGTGAGAG+TGG | 0.525574 | 1_4:-20660490 | Msa0155380:CDS |
| ACCATTGACATCTGGTCAGT+TGG | 0.528063 | 1_4:-20660629 | Msa0155380:CDS |
| ACATTACATACCTTATGTCA+TGG | 0.534209 | 1_4:+20660169 | None:intergenic |
| TGACCAGATGTCAATGGTTG+TGG | 0.568382 | 1_4:+20660634 | None:intergenic |
| GTTGCACCGAATATAAGCTC+AGG | 0.582148 | 1_4:+20660665 | None:intergenic |
| TGGTCTACTCCACTCTCACC+AGG | 0.583110 | 1_4:+20660481 | None:intergenic |
| ACCAACTGACCAGATGTCAA+TGG | 0.588620 | 1_4:+20660628 | None:intergenic |
| GAGTGGAGTAGACCAACTTG+TGG | 0.666033 | 1_4:-20660473 | Msa0155380:CDS |
| TTTAGAGATCACAGTCACAG+GGG | 0.724072 | 1_4:+20658273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATATTATGTATCAT+TGG | + | chr1_4:20659746-20659765 | None:intergenic | 10.0% |
| !!! | TTATAGTTTTTTCATTTTTT+TGG | - | chr1_4:20660032-20660051 | Msa0155380:intron | 10.0% |
| !!! | TATAGTTTTTTCATTTTTTT+GGG | - | chr1_4:20660033-20660052 | Msa0155380:intron | 10.0% |
| !!! | TGTGTTTTTTTTTTTTAATT+TGG | - | chr1_4:20660137-20660156 | Msa0155380:intron | 10.0% |
| !!! | TAAACATTTTTTTTTTACAA+AGG | + | chr1_4:20661896-20661915 | None:intergenic | 10.0% |
| !!! | TTCAAAGATTTTTAAACTTA+AGG | - | chr1_4:20659029-20659048 | Msa0155380:intron | 15.0% |
| !!! | TCAAAGATTTTTAAACTTAA+GGG | - | chr1_4:20659030-20659049 | Msa0155380:intron | 15.0% |
| !! | AAATGAAAAGAACTTATTAT+AGG | + | chr1_4:20659061-20659080 | None:intergenic | 15.0% |
| !!! | TTATGTAGTAATTTAGTTTT+TGG | - | chr1_4:20659240-20659259 | Msa0155380:intron | 15.0% |
| !!! | TAAAAATCAACTTTGTTTTT+AGG | - | chr1_4:20659508-20659527 | Msa0155380:intron | 15.0% |
| !! | AAAAAACACATGAAAATATT+AGG | + | chr1_4:20660127-20660146 | None:intergenic | 15.0% |
| !!! | ATAGCTATTTGAATTTTATA+AGG | - | chr1_4:20660906-20660925 | Msa0155380:intron | 15.0% |
| !! | AATTTAAACTCTGTATAATT+AGG | + | chr1_4:20661461-20661480 | None:intergenic | 15.0% |
| !! | ATGTACATGTATTTATAAAT+CGG | - | chr1_4:20661580-20661599 | Msa0155380:intron | 15.0% |
| !! | ATAGAAAAATATTACATGAT+GGG | - | chr1_4:20662005-20662024 | Msa0155380:intron | 15.0% |
| !! | AAATTCATAAACTCAAATAA+AGG | + | chr1_4:20662405-20662424 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTGAAAAAGAATT+TGG | - | chr1_4:20662661-20662680 | Msa0155380:intron | 15.0% |
| !!! | TTTTCTTTGAAAAAGAATTT+GGG | - | chr1_4:20662662-20662681 | Msa0155380:intron | 15.0% |
| !!! | TTATTTGTTTTGAATTGTTA+AGG | - | chr1_4:20662898-20662917 | Msa0155380:intron | 15.0% |
| !!! | TTTTTGTTGTTGAATATTTT+AGG | - | chr1_4:20663359-20663378 | Msa0155380:intron | 15.0% |
| !! | ACTATAAACAAAAAACGTAT+AGG | + | chr1_4:20658883-20658902 | None:intergenic | 20.0% |
| !!! | AAACATAGCTAAATGATTTT+TGG | - | chr1_4:20658913-20658932 | Msa0155380:intron | 20.0% |
| !! | GTTAAAAACGAAATTAAAGT+TGG | + | chr1_4:20659207-20659226 | None:intergenic | 20.0% |
| !!! | ACTTGATATCAATCTTATTT+TGG | - | chr1_4:20659456-20659475 | Msa0155380:intron | 20.0% |
| !!! | CTTGATATCAATCTTATTTT+GGG | - | chr1_4:20659457-20659476 | Msa0155380:intron | 20.0% |
| !!! | TCAACAAAAATGAGTTTTTT+TGG | - | chr1_4:20659574-20659593 | Msa0155380:intron | 20.0% |
| !!! | TTTTGGTTTATAATTGATGA+TGG | - | chr1_4:20659591-20659610 | Msa0155380:intron | 20.0% |
| !! | GAAGTTTCATATAATATTTC+AGG | + | chr1_4:20659793-20659812 | None:intergenic | 20.0% |
| !! | GAATATTTATATTGTGTCAT+TGG | - | chr1_4:20659939-20659958 | Msa0155380:intron | 20.0% |
| !!! | TTCAAGTTATGTTATTTTGA+AGG | - | chr1_4:20660160-20660179 | Msa0155380:intron | 20.0% |
| !!! | TTATGTTATTTTGAAGGATT+GGG | - | chr1_4:20660166-20660185 | Msa0155380:intron | 20.0% |
| !!! | TTGTGTTATTTTGAAAGATT+GGG | - | chr1_4:20660335-20660354 | Msa0155380:intron | 20.0% |
| !! | TATTAAACCTCAAAATTTAC+TGG | - | chr1_4:20660505-20660524 | Msa0155380:intron | 20.0% |
| !! | TGAAATGATCTAATAAAACA+TGG | + | chr1_4:20660724-20660743 | None:intergenic | 20.0% |
| !!! | AGAATGAAGATAGTAATTTT+TGG | - | chr1_4:20660754-20660773 | Msa0155380:intron | 20.0% |
| !!! | TATATGGTTTTACATGTTAA+AGG | - | chr1_4:20660938-20660957 | Msa0155380:intron | 20.0% |
| !! | GAACAAATGTAAGATATATT+TGG | + | chr1_4:20660968-20660987 | None:intergenic | 20.0% |
| !! | ATATATCTTACATTTGTTCT+AGG | - | chr1_4:20660969-20660988 | Msa0155380:intron | 20.0% |
| !! | TTTGAATGAATTTAATGAGT+AGG | - | chr1_4:20661747-20661766 | Msa0155380:intron | 20.0% |
| !!! | CATTTTTTTTTTACAAAGGT+TGG | + | chr1_4:20661892-20661911 | None:intergenic | 20.0% |
| !!! | GCACATGTTTATATTTTATT+TGG | - | chr1_4:20661963-20661982 | Msa0155380:intron | 20.0% |
| !! | CATAGAAAAATATTACATGA+TGG | - | chr1_4:20662004-20662023 | Msa0155380:intron | 20.0% |
| !! | TAGAAAAATATTACATGATG+GGG | - | chr1_4:20662006-20662025 | Msa0155380:intron | 20.0% |
| !!! | GAATTTTACTATATGTTACA+TGG | - | chr1_4:20662419-20662438 | Msa0155380:intron | 20.0% |
| !! | TGTAGAATGTAGAATTTATT+TGG | - | chr1_4:20662625-20662644 | Msa0155380:intron | 20.0% |
| !!! | TTTAATTTATCCATCTCATT+AGG | + | chr1_4:20662708-20662727 | None:intergenic | 20.0% |
| !! | TAATGAGATGGATAAATTAA+AGG | - | chr1_4:20662707-20662726 | Msa0155380:intron | 20.0% |
| !! | AATGAGATGGATAAATTAAA+GGG | - | chr1_4:20662708-20662727 | Msa0155380:intron | 20.0% |
| ! | ATTATCAGCCTACTAATATA+AGG | - | chr1_4:20658324-20658343 | Msa0155380:intron | 25.0% |
| ! | TACTAAGTAGAACTGTTAAA+AGG | + | chr1_4:20658578-20658597 | None:intergenic | 25.0% |
| !!! | TTCTTGATGCTTTTTACAAA+GGG | - | chr1_4:20658646-20658665 | Msa0155380:intron | 25.0% |
| ! | ACTATGATCCAAAAAACAAA+GGG | - | chr1_4:20658759-20658778 | Msa0155380:intron | 25.0% |
| ! | AAGTTACATAATACCAAACT+TGG | + | chr1_4:20658786-20658805 | None:intergenic | 25.0% |
| !! | AAACCTTATAATAGCTCTTT+TGG | + | chr1_4:20658975-20658994 | None:intergenic | 25.0% |
| !! | TATAAGGTTTTGCTTGTAAT+TGG | - | chr1_4:20658985-20659004 | Msa0155380:intron | 25.0% |
| ! | TATACTGAATTACATATGCA+AGG | + | chr1_4:20659269-20659288 | None:intergenic | 25.0% |
| ! | GCATATGTAATTCAGTATAA+AGG | - | chr1_4:20659270-20659289 | Msa0155380:intron | 25.0% |
| !!! | TAGTGATTGTGATTAGTTTT+TGG | - | chr1_4:20659308-20659327 | Msa0155380:intron | 25.0% |
| !!! | ATTGTGATTAGTTTTTGGAA+AGG | - | chr1_4:20659313-20659332 | Msa0155380:intron | 25.0% |
| !!! | ATTAGTTTTTGGAAAGGAAT+TGG | - | chr1_4:20659319-20659338 | Msa0155380:intron | 25.0% |
| !! | TTGATGTTGATTGTAATTTG+TGG | - | chr1_4:20659359-20659378 | Msa0155380:intron | 25.0% |
| ! | TGACATACTTATTATAGCAA+AGG | + | chr1_4:20659393-20659412 | None:intergenic | 25.0% |
| ! | TGCTGTATAATATCAGATTT+AGG | - | chr1_4:20659679-20659698 | Msa0155380:intron | 25.0% |
| !! | ATATGAAACTTCTTTTGTCT+TGG | - | chr1_4:20659801-20659820 | Msa0155380:intron | 25.0% |
| ! | GGAATTAGATATATACCAAA+AGG | - | chr1_4:20659822-20659841 | Msa0155380:intron | 25.0% |
| ! | GACAAAAACAAAAGTTTAGA+TGG | + | chr1_4:20659877-20659896 | None:intergenic | 25.0% |
| !! | ATCCTTTAGGTCTTTTTAAT+TGG | + | chr1_4:20659899-20659918 | None:intergenic | 25.0% |
| ! | TATTACATGAAACATCCTTT+AGG | + | chr1_4:20659912-20659931 | None:intergenic | 25.0% |
| !!! | AGTTTTTTCATTTTTTTGGG+TGG | - | chr1_4:20660036-20660055 | Msa0155380:intron | 25.0% |
| !!! | GTTTTTTCATTTTTTTGGGT+GGG | - | chr1_4:20660037-20660056 | Msa0155380:intron | 25.0% |
| !!! | GTTATGTTATTTTGAAGGAT+TGG | - | chr1_4:20660165-20660184 | Msa0155380:intron | 25.0% |
| ! | TATATGACTTTCTTCACATT+AGG | - | chr1_4:20660276-20660295 | Msa0155380:intron | 25.0% |
| !!! | GTTGTGTTATTTTGAAAGAT+TGG | - | chr1_4:20660334-20660353 | Msa0155380:intron | 25.0% |
| ! | AAATTTACTGGTATGTTCAT+TGG | - | chr1_4:20660517-20660536 | Msa0155380:intron | 25.0% |
| !! | ATTAAATTTTCAGACATTGC+AGG | + | chr1_4:20660601-20660620 | None:intergenic | 25.0% |
| !!! | ATGTTTTAGCATTTACAAGT+TGG | - | chr1_4:20660640-20660659 | Msa0155380:CDS | 25.0% |
| ! | ATTACTATCTTCATTCTGTT+AGG | + | chr1_4:20660751-20660770 | None:intergenic | 25.0% |
| !! | TTTTGATGCTGTATAAAAAC+AGG | - | chr1_4:20660785-20660804 | Msa0155380:intron | 25.0% |
| ! | TATAAGGACTAAATGCTATA+TGG | - | chr1_4:20660922-20660941 | Msa0155380:intron | 25.0% |
| ! | ACAATAGTATAGCAATAGTA+TGG | - | chr1_4:20661246-20661265 | Msa0155380:intron | 25.0% |
| ! | AAACGAAATGAAAAGATGAA+AGG | + | chr1_4:20661344-20661363 | None:intergenic | 25.0% |
| ! | AAATCAACTTTATGTCAGTT+GGG | + | chr1_4:20661778-20661797 | None:intergenic | 25.0% |
| !!! | AAAGGTTGGTAACTATAATT+TGG | + | chr1_4:20661878-20661897 | None:intergenic | 25.0% |
| ! | TTTACAAAAATCATTCCATG+AGG | - | chr1_4:20662157-20662176 | Msa0155380:intron | 25.0% |
| ! | ATGCCAAATTTGATTGAATT+TGG | - | chr1_4:20662209-20662228 | Msa0155380:intron | 25.0% |
| ! | AGTCCAAATTCAATCAAATT+TGG | + | chr1_4:20662215-20662234 | None:intergenic | 25.0% |
| ! | TTGGACTTGAATAATTAGTT+TGG | - | chr1_4:20662228-20662247 | Msa0155380:intron | 25.0% |
| ! | ATATCATAAGTTATGTACCA+TGG | + | chr1_4:20662303-20662322 | None:intergenic | 25.0% |
| ! | TGGTACATAACTTATGATAT+TGG | - | chr1_4:20662303-20662322 | Msa0155380:intron | 25.0% |
| ! | ATAACAATATAGTTCACACA+TGG | + | chr1_4:20662360-20662379 | None:intergenic | 25.0% |
| ! | TATAATTAGAGTTGAGTTTG+TGG | - | chr1_4:20662377-20662396 | Msa0155380:intron | 25.0% |
| ! | ATGAGATGGATAAATTAAAG+GGG | - | chr1_4:20662709-20662728 | Msa0155380:intron | 25.0% |
| !! | AATTTTTACACCTCATTTGT+TGG | - | chr1_4:20662875-20662894 | Msa0155380:intron | 25.0% |
| ! | AAACAAATAACCAACAAATG+AGG | + | chr1_4:20662888-20662907 | None:intergenic | 25.0% |
| ! | TGGACCTAAATTTATCATTT+AGG | - | chr1_4:20662934-20662953 | Msa0155380:intron | 25.0% |
| ! | AACGCCTAAATGATAAATTT+AGG | + | chr1_4:20662941-20662960 | None:intergenic | 25.0% |
| ! | TACAATAAACACCAACAAAT+GGG | + | chr1_4:20663196-20663215 | None:intergenic | 25.0% |
| TAATATAAGGTTCCTCCTTA+GGG | - | chr1_4:20658337-20658356 | Msa0155380:intron | 30.0% | |
| AACAGCTAACATAGAAAGAT+AGG | - | chr1_4:20658444-20658463 | Msa0155380:intron | 30.0% | |
| ACAGCTAACATAGAAAGATA+GGG | - | chr1_4:20658445-20658464 | Msa0155380:intron | 30.0% | |
| ! | TTAGTAGCTAGACTTTTTGT+TGG | - | chr1_4:20658592-20658611 | Msa0155380:intron | 30.0% |
| ! | TTGGAAAGAAAAGCACAATA+GGG | - | chr1_4:20658611-20658630 | Msa0155380:intron | 30.0% |
| !! | GTTCTTGATGCTTTTTACAA+AGG | - | chr1_4:20658645-20658664 | Msa0155380:intron | 30.0% |
| !! | TTTCTTTTGTTTGTGAATGC+AGG | - | chr1_4:20658679-20658698 | Msa0155380:intron | 30.0% |
| !! | TTCTTTTGTTTGTGAATGCA+GGG | - | chr1_4:20658680-20658699 | Msa0155380:intron | 30.0% |
| !!! | CTTTGTTTTTTGGATCATAG+TGG | + | chr1_4:20658760-20658779 | None:intergenic | 30.0% |
| CACTATGATCCAAAAAACAA+AGG | - | chr1_4:20658758-20658777 | Msa0155380:intron | 30.0% | |
| CTATGATCCAAAAAACAAAG+GGG | - | chr1_4:20658760-20658779 | Msa0155380:intron | 30.0% | |
| TGGAAGTTAGAAAATTGTCA+TGG | + | chr1_4:20658955-20658974 | None:intergenic | 30.0% | |
| CTTCCAAAAGAGCTATTATA+AGG | - | chr1_4:20658969-20658988 | Msa0155380:intron | 30.0% | |
| !!! | TCAACTTTGTTTTTAGGCTT+TGG | - | chr1_4:20659514-20659533 | Msa0155380:intron | 30.0% |
| !! | TGGTTTATAATTGATGATGG+TGG | - | chr1_4:20659594-20659613 | Msa0155380:intron | 30.0% |
| GTCCAATTAAAAAGACCTAA+AGG | - | chr1_4:20659894-20659913 | Msa0155380:intron | 30.0% | |
| TCACATTAGGATTTGTAACT+TGG | - | chr1_4:20660289-20660308 | Msa0155380:intron | 30.0% | |
| TCATAAATTCCCATACCATA+AGG | - | chr1_4:20660437-20660456 | Msa0155380:intron | 30.0% | |
| CATAAATTCCCATACCATAA+GGG | - | chr1_4:20660438-20660457 | Msa0155380:intron | 30.0% | |
| AAATCAAACCCTTATGGTAT+GGG | + | chr1_4:20660449-20660468 | None:intergenic | 30.0% | |
| AAAATCAAACCCTTATGGTA+TGG | + | chr1_4:20660450-20660469 | None:intergenic | 30.0% | |
| ! | GAACATACCAGTAAATTTTG+AGG | + | chr1_4:20660515-20660534 | None:intergenic | 30.0% |
| AAACAAACGAAAGGATTTCA+AGG | + | chr1_4:20660882-20660901 | None:intergenic | 30.0% | |
| ACATTACATACCTTATGTCA+TGG | + | chr1_4:20661503-20661522 | None:intergenic | 30.0% | |
| GTTTATGTAATGAAAGAGCA+AGG | + | chr1_4:20661559-20661578 | None:intergenic | 30.0% | |
| ! | TGATTTCTTCATCTTTTGAG+TGG | - | chr1_4:20661701-20661720 | Msa0155380:intron | 30.0% |
| TTCATTCAAACTGAATGTGA+AGG | + | chr1_4:20661737-20661756 | None:intergenic | 30.0% | |
| CAAATCAACTTTATGTCAGT+TGG | + | chr1_4:20661779-20661798 | None:intergenic | 30.0% | |
| ! | CAACTGACATAAAGTTGATT+TGG | - | chr1_4:20661777-20661796 | Msa0155380:intron | 30.0% |
| TTCAATCAAATTTGGCATGT+AGG | + | chr1_4:20662207-20662226 | None:intergenic | 30.0% | |
| AAAATGAAAATAGGGAACCA+TGG | - | chr1_4:20662283-20662302 | Msa0155380:intron | 30.0% | |
| ATACACGTTTAGACAGTTTA+AGG | - | chr1_4:20662466-20662485 | Msa0155380:intron | 30.0% | |
| AGGATGAAATCCAACATTAT+CGG | + | chr1_4:20662688-20662707 | None:intergenic | 30.0% | |
| !!! | GAAGATGCTTTTTAAAGTTC+AGG | - | chr1_4:20662734-20662753 | Msa0155380:intron | 30.0% |
| ! | TTTAAAGTTCAGGCAGTTAT+TGG | - | chr1_4:20662744-20662763 | Msa0155380:intron | 30.0% |
| TTTGTATGATGGTTCCTATA+GGG | - | chr1_4:20662776-20662795 | Msa0155380:intron | 30.0% | |
| GGTGTAAAAATTACCTTAGA+AGG | + | chr1_4:20662867-20662886 | None:intergenic | 30.0% | |
| !! | GTTAAGGCTATGTTTTTCAA+TGG | - | chr1_4:20662914-20662933 | Msa0155380:intron | 30.0% |
| ATTGATACTGAGAAGATTGT+TGG | - | chr1_4:20662986-20663005 | Msa0155380:intron | 30.0% | |
| CTACAATAAACACCAACAAA+TGG | + | chr1_4:20663197-20663216 | None:intergenic | 30.0% | |
| AAATTCATGAGATGCCTTTA+GGG | + | chr1_4:20663230-20663249 | None:intergenic | 30.0% | |
| !! | TTGTTGAATATTTTAGGCTG+TGG | - | chr1_4:20663365-20663384 | Msa0155380:intron | 30.0% |
| AGGAGGAACCTTATATTAGT+AGG | + | chr1_4:20658335-20658354 | None:intergenic | 35.0% | |
| CTAATATAAGGTTCCTCCTT+AGG | - | chr1_4:20658336-20658355 | Msa0155380:intron | 35.0% | |
| TAGTGATGCTAATTACCCTA+AGG | + | chr1_4:20658355-20658374 | None:intergenic | 35.0% | |
| AACATAGAAAGATAGGGACA+TGG | - | chr1_4:20658451-20658470 | Msa0155380:intron | 35.0% | |
| ATGGTTAATGAAGGTAACCT+AGG | - | chr1_4:20658470-20658489 | Msa0155380:intron | 35.0% | |
| ! | GTTGGAAAGAAAAGCACAAT+AGG | - | chr1_4:20658610-20658629 | Msa0155380:intron | 35.0% |
| TTTGTATGAAGATCCCTCAA+TGG | + | chr1_4:20658706-20658725 | None:intergenic | 35.0% | |
| ATTGAGGGATCTTCATACAA+AGG | - | chr1_4:20658705-20658724 | Msa0155380:intron | 35.0% | |
| !!! | TGTTTTTTGGATCATAGTGG+TGG | + | chr1_4:20658757-20658776 | None:intergenic | 35.0% |
| !! | GGTATTATGTAACTTGCTGA+AGG | - | chr1_4:20658791-20658810 | Msa0155380:intron | 35.0% |
| !! | TGTTGAATGAAAGAAGCATC+AGG | - | chr1_4:20659113-20659132 | Msa0155380:intron | 35.0% |
| TCAGTTTGATTGTGTTTGAC+AGG | - | chr1_4:20659413-20659432 | Msa0155380:intron | 35.0% | |
| !!! | ACTTTGTTTTTAGGCTTTGG+TGG | - | chr1_4:20659517-20659536 | Msa0155380:intron | 35.0% |
| !!! | GCTTTGGTGGAAGTTTTTTT+AGG | - | chr1_4:20659530-20659549 | Msa0155380:intron | 35.0% |
| !!! | GTGGAAGTTTTTTTAGGCTT+TGG | - | chr1_4:20659536-20659555 | Msa0155380:intron | 35.0% |
| !!! | GAAGTTTTTTTAGGCTTTGG+TGG | - | chr1_4:20659539-20659558 | Msa0155380:intron | 35.0% |
| GAACGCAAAGATTTCTCAAA+AGG | - | chr1_4:20659616-20659635 | Msa0155380:intron | 35.0% | |
| TACTTTCTCTCTCCTTCATT+CGG | + | chr1_4:20659644-20659663 | None:intergenic | 35.0% | |
| GATGCATAGCTAGAACATTA+TGG | - | chr1_4:20659701-20659720 | Msa0155380:intron | 35.0% | |
| ! | ATGGACTAACTACAAAGCAA+CGG | + | chr1_4:20659858-20659877 | None:intergenic | 35.0% |
| AAGTCTTCCATACCTTCATT+TGG | - | chr1_4:20660397-20660416 | Msa0155380:intron | 35.0% | |
| AAACAGACCAAATGAAGGTA+TGG | + | chr1_4:20660407-20660426 | None:intergenic | 35.0% | |
| CCAAAAAACAGACCAAATGA+AGG | + | chr1_4:20660412-20660431 | None:intergenic | 35.0% | |
| !!! | CCTTCATTTGGTCTGTTTTT+TGG | - | chr1_4:20660409-20660428 | Msa0155380:intron | 35.0% |
| !! | ACCATAAGGGTTTGATTTTG+AGG | - | chr1_4:20660451-20660470 | Msa0155380:intron | 35.0% |
| ACCTCAAAATCAAACCCTTA+TGG | + | chr1_4:20660455-20660474 | None:intergenic | 35.0% | |
| !!! | AGGGTTTGATTTTGAGGTTT+TGG | - | chr1_4:20660457-20660476 | Msa0155380:intron | 35.0% |
| !! | GTGCATTCGTTGATTTATGT+GGG | - | chr1_4:20660665-20660684 | Msa0155380:CDS | 35.0% |
| !! | TGCATTCGTTGATTTATGTG+GGG | - | chr1_4:20660666-20660685 | Msa0155380:CDS | 35.0% |
| GCTATTGCAAAACAAACGAA+AGG | + | chr1_4:20660891-20660910 | None:intergenic | 35.0% | |
| GTACACAAAAGCTAGTTAAC+TGG | + | chr1_4:20661093-20661112 | None:intergenic | 35.0% | |
| ! | CCTTGATAATTTCCACAAGT+TGG | + | chr1_4:20661211-20661230 | None:intergenic | 35.0% |
| CCAACTTGTGGAAATTATCA+AGG | - | chr1_4:20661208-20661227 | Msa0155380:intron | 35.0% | |
| ATATGTTCAAGCTAGTAGCA+AGG | + | chr1_4:20661308-20661327 | None:intergenic | 35.0% | |
| AAGTGAACCACATGAAACTT+CGG | + | chr1_4:20661392-20661411 | None:intergenic | 35.0% | |
| ACTTGATTTCTTCCCTTGTT+GGG | + | chr1_4:20661430-20661449 | None:intergenic | 35.0% | |
| !! | CATGGATGAGATTTGATTTG+AGG | + | chr1_4:20661485-20661504 | None:intergenic | 35.0% |
| CAAATCTCATCCATGACATA+AGG | - | chr1_4:20661490-20661509 | Msa0155380:intron | 35.0% | |
| GCATAATATGATTGATGCCA+TGG | - | chr1_4:20661840-20661859 | Msa0155380:intron | 35.0% | |
| TTTGGAAGACTTTATGACCA+TGG | + | chr1_4:20661860-20661879 | None:intergenic | 35.0% | |
| AAGTAGGCAATCTTCAAAGT+AGG | - | chr1_4:20662042-20662061 | Msa0155380:intron | 35.0% | |
| TTAAGCTCTCAAGTCTTCAT+CGG | + | chr1_4:20662078-20662097 | None:intergenic | 35.0% | |
| ACTTGAGAGCTTAAGGATAA+AGG | - | chr1_4:20662084-20662103 | Msa0155380:intron | 35.0% | |
| AAAATCATTCCATGAGGTCT+AGG | - | chr1_4:20662163-20662182 | Msa0155380:intron | 35.0% | |
| ! | TTTTTGTTACCTAGACCTCA+TGG | + | chr1_4:20662175-20662194 | None:intergenic | 35.0% |
| AGTTTGGTCAAGTTACGAAT+TGG | - | chr1_4:20662244-20662263 | Msa0155380:intron | 35.0% | |
| AGATAAACAATGCGCTCATT+TGG | - | chr1_4:20662562-20662581 | Msa0155380:intron | 35.0% | |
| !!! | TGCTGTAGCTAAGGTTTTTT+TGG | - | chr1_4:20662586-20662605 | Msa0155380:intron | 35.0% |
| TGGATTTCATCCTAATGAGA+TGG | - | chr1_4:20662695-20662714 | Msa0155380:intron | 35.0% | |
| CTTTGTATGATGGTTCCTAT+AGG | - | chr1_4:20662775-20662794 | Msa0155380:intron | 35.0% | |
| TGAGATTTACTCTCCTTCTA+AGG | - | chr1_4:20662851-20662870 | Msa0155380:intron | 35.0% | |
| !! | GAATGTTTCACTTGATGATG+AGG | - | chr1_4:20662961-20662980 | Msa0155380:intron | 35.0% |
| ! | ACTGAGGATTTTGTCTCTTA+AGG | - | chr1_4:20663028-20663047 | Msa0155380:intron | 35.0% |
| TTCTCATCATCGTTCAAATC+AGG | + | chr1_4:20663065-20663084 | None:intergenic | 35.0% | |
| TTTGAACGATGATGAGAATC+TGG | - | chr1_4:20663067-20663086 | Msa0155380:intron | 35.0% | |
| ! | GATGATGAGAATCTGGATTT+TGG | - | chr1_4:20663074-20663093 | Msa0155380:intron | 35.0% |
| GAAATCTTCCAAGTCTGTTA+AGG | - | chr1_4:20663141-20663160 | Msa0155380:intron | 35.0% | |
| CTTAACAACCTTAACAGACT+TGG | + | chr1_4:20663152-20663171 | None:intergenic | 35.0% | |
| CAAGTCTGTTAAGGTTGTTA+AGG | - | chr1_4:20663150-20663169 | Msa0155380:intron | 35.0% | |
| GTAGTTGTTTGATTCCCTAA+AGG | - | chr1_4:20663213-20663232 | Msa0155380:intron | 35.0% | |
| CAAATTCATGAGATGCCTTT+AGG | + | chr1_4:20663231-20663250 | None:intergenic | 35.0% | |
| TGAATAACTGTATCTGTCTG+TGG | - | chr1_4:20663292-20663311 | Msa0155380:intron | 35.0% | |
| TGATGCTAATTACCCTAAGG+AGG | + | chr1_4:20658352-20658371 | None:intergenic | 40.0% | |
| GATAGGGACATGGTTAATGA+AGG | - | chr1_4:20658461-20658480 | Msa0155380:intron | 40.0% | |
| GGATCTTCATACAAAGGACT+GGG | - | chr1_4:20658711-20658730 | Msa0155380:intron | 40.0% | |
| !!! | AACTTGGCCCCTTTGTTTTT+TGG | + | chr1_4:20658770-20658789 | None:intergenic | 40.0% |
| AAAAACAAAGGGGCCAAGTT+TGG | - | chr1_4:20658770-20658789 | Msa0155380:intron | 40.0% | |
| AAGTTGGAAGACAGTAGTGA+AGG | + | chr1_4:20659191-20659210 | None:intergenic | 40.0% | |
| TTGATTGTGTTTGACAGGTG+TGG | - | chr1_4:20659418-20659437 | Msa0155380:intron | 40.0% | |
| ! | AACGGTTCTTCTCTTCCTTT+TGG | + | chr1_4:20659840-20659859 | None:intergenic | 40.0% |
| ! | TAGCCTTTCCTCAAAAGTAC+AGG | - | chr1_4:20660208-20660227 | Msa0155380:intron | 40.0% |
| ! | CTTTCCTCAAAAGTACAGGT+CGG | - | chr1_4:20660212-20660231 | Msa0155380:intron | 40.0% |
| ! | TCTGCGTTTTTAAACCTCAC+AGG | - | chr1_4:20660480-20660499 | Msa0155380:CDS | 40.0% |
| ! | CTGCGTTTTTAAACCTCACA+GGG | - | chr1_4:20660481-20660500 | Msa0155380:CDS | 40.0% |
| TGAGGTTTAATATCCCTGTG+AGG | + | chr1_4:20660497-20660516 | None:intergenic | 40.0% | |
| !! | CGTGCATTCGTTGATTTATG+TGG | - | chr1_4:20660664-20660683 | Msa0155380:CDS | 40.0% |
| CAAAGTCGCATATCTTCAGT+TGG | + | chr1_4:20660827-20660846 | None:intergenic | 40.0% | |
| CAACTGAAGATATGCGACTT+TGG | - | chr1_4:20660825-20660844 | Msa0155380:intron | 40.0% | |
| !! | CTTTGGAAGTGCTAATGTCT+TGG | - | chr1_4:20660842-20660861 | Msa0155380:intron | 40.0% |
| AGAGCTCCTGAGCTTATATT+CGG | - | chr1_4:20660998-20661017 | Msa0155380:intron | 40.0% | |
| !! | GTACTTGGTGAACTTTTGCT+TGG | - | chr1_4:20661067-20661086 | Msa0155380:intron | 40.0% |
| !!! | AACTAGCTTTTGTGTACGCT+TGG | - | chr1_4:20661096-20661115 | Msa0155380:intron | 40.0% |
| TCTTATCAGTCACTGTTTCC+TGG | - | chr1_4:20661170-20661189 | Msa0155380:intron | 40.0% | |
| GTTCATTCCGAAGTTTCATG+TGG | - | chr1_4:20661382-20661401 | Msa0155380:intron | 40.0% | |
| CTTGATTTCTTCCCTTGTTG+GGG | + | chr1_4:20661429-20661448 | None:intergenic | 40.0% | |
| CACTTGATTTCTTCCCTTGT+TGG | + | chr1_4:20661431-20661450 | None:intergenic | 40.0% | |
| GGGATCATAAATGCTGAAGT+AGG | - | chr1_4:20662026-20662045 | Msa0155380:intron | 40.0% | |
| TAAGCTCTCAAGTCTTCATC+GGG | + | chr1_4:20662077-20662096 | None:intergenic | 40.0% | |
| GATGAAGACTTGAGAGCTTA+AGG | - | chr1_4:20662077-20662096 | Msa0155380:intron | 40.0% | |
| CATCAGTTTCATCAGATGCT+TGG | + | chr1_4:20662499-20662518 | None:intergenic | 40.0% | |
| !!! | TGTTGCTTTTGACACTGACA+TGG | - | chr1_4:20662529-20662548 | Msa0155380:intron | 40.0% |
| !!! | GTTGCTTTTGACACTGACAT+GGG | - | chr1_4:20662530-20662549 | Msa0155380:intron | 40.0% |
| TCATTTGGTTGCTGTAGCTA+AGG | - | chr1_4:20662577-20662596 | Msa0155380:intron | 40.0% | |
| AGAATTTGGGCCGATAATGT+TGG | - | chr1_4:20662675-20662694 | Msa0155380:intron | 40.0% | |
| ! | TACTGAGAAGATTGTTGGCT+CGG | - | chr1_4:20662991-20663010 | Msa0155380:intron | 40.0% |
| AACAGACTTGGAAGATTTCC+TGG | + | chr1_4:20663140-20663159 | None:intergenic | 40.0% | |
| AAGGTTGTTAAGGACTGAGA+AGG | - | chr1_4:20663160-20663179 | Msa0155380:intron | 40.0% | |
| CATCCATTACACCTCATTAG+GGG | + | chr1_4:20663323-20663342 | None:intergenic | 40.0% | |
| CCATCCATTACACCTCATTA+GGG | + | chr1_4:20663324-20663343 | None:intergenic | 40.0% | |
| TCCATCCATTACACCTCATT+AGG | + | chr1_4:20663325-20663344 | None:intergenic | 40.0% | |
| GCAAGAAAGCTAGTAAGCCT+AGG | + | chr1_4:20658490-20658509 | None:intergenic | 45.0% | |
| GGGATCTTCATACAAAGGAC+TGG | - | chr1_4:20658710-20658729 | Msa0155380:intron | 45.0% | |
| TTGCTGAAGGCTTCACTCAT+CGG | - | chr1_4:20658804-20658823 | Msa0155380:intron | 45.0% | |
| ATTGTGTTTGACAGGTGTGG+TGG | - | chr1_4:20659421-20659440 | Msa0155380:intron | 45.0% | |
| TCTCAAAAGGAGCCGAATGA+AGG | - | chr1_4:20659629-20659648 | Msa0155380:intron | 45.0% | |
| !! | CGACCTGTACTTTTGAGGAA+AGG | + | chr1_4:20660214-20660233 | None:intergenic | 45.0% |
| GTCGCATATCTTCAGTTGGT+GGG | + | chr1_4:20660823-20660842 | None:intergenic | 45.0% | |
| AGTCGCATATCTTCAGTTGG+TGG | + | chr1_4:20660824-20660843 | None:intergenic | 45.0% | |
| GTTGCACCGAATATAAGCTC+AGG | + | chr1_4:20661007-20661026 | None:intergenic | 45.0% | |
| ACACCACAACCATTGACATC+TGG | - | chr1_4:20661032-20661051 | Msa0155380:intron | 45.0% | |
| TGACCAGATGTCAATGGTTG+TGG | + | chr1_4:20661038-20661057 | None:intergenic | 45.0% | |
| ACCATTGACATCTGGTCAGT+TGG | - | chr1_4:20661040-20661059 | Msa0155380:intron | 45.0% | |
| ACCAACTGACCAGATGTCAA+TGG | + | chr1_4:20661044-20661063 | None:intergenic | 45.0% | |
| GTTTCATGTGGTTCACTTGC+AGG | - | chr1_4:20661394-20661413 | Msa0155380:intron | 45.0% | |
| ! | GTGGTTCACTTGCAGGTTTT+AGG | - | chr1_4:20661401-20661420 | Msa0155380:intron | 45.0% |
| !!! | AGGTTTTAGGTACCCCAACA+AGG | - | chr1_4:20661414-20661433 | Msa0155380:intron | 45.0% |
| !!! | GGTTTTAGGTACCCCAACAA+GGG | - | chr1_4:20661415-20661434 | Msa0155380:intron | 45.0% |
| ATGGTTCCTATAGGGTGAGA+AGG | - | chr1_4:20662784-20662803 | Msa0155380:intron | 45.0% | |
| TGGTTCCTATAGGGTGAGAA+GGG | - | chr1_4:20662785-20662804 | Msa0155380:intron | 45.0% | |
| ACAAACCCTTCTCACCCTAT+AGG | + | chr1_4:20662793-20662812 | None:intergenic | 45.0% | |
| ! | GGTTGATGCTTCACATACTG+AGG | - | chr1_4:20663012-20663031 | Msa0155380:intron | 45.0% |
| CATCCAGTCTTACTACCAAG+AGG | - | chr1_4:20663099-20663118 | Msa0155380:intron | 45.0% | |
| ! | CAACCTCTTGGTAGTAAGAC+TGG | + | chr1_4:20663105-20663124 | None:intergenic | 45.0% |
| CAGTCTTACTACCAAGAGGT+TGG | - | chr1_4:20663103-20663122 | Msa0155380:intron | 45.0% | |
| ! | AAGGACTGAGAAGGTGTGTT+TGG | - | chr1_4:20663169-20663188 | Msa0155380:intron | 45.0% |
| GTGTGTTTGGTCCCATTTGT+TGG | - | chr1_4:20663182-20663201 | Msa0155380:intron | 45.0% | |
| TTGCCCCTAATGAGGTGTAA+TGG | - | chr1_4:20663317-20663336 | Msa0155380:intron | 45.0% | |
| ! | CCCTAATGAGGTGTAATGGA+TGG | - | chr1_4:20663321-20663340 | Msa0155380:intron | 45.0% |
| !! | AAAAAAAAAAAAAAAATTGT+TGG | + | chr1_4:20662133-20662152 | None:intergenic | 5.0% |
| !! | AAAAAAATAAAAATGAAAAT+AGG | - | chr1_4:20662274-20662293 | Msa0155380:intron | 5.0% |
| !! | AAAAAATAAAAATGAAAATA+GGG | - | chr1_4:20662275-20662294 | Msa0155380:intron | 5.0% |
| TTGTGAATGCAGGGCCATTG+AGG | - | chr1_4:20658689-20658708 | Msa0155380:intron | 50.0% | |
| TGTGAATGCAGGGCCATTGA+GGG | - | chr1_4:20658690-20658709 | Msa0155380:intron | 50.0% | |
| ! | CATGCCGACCTGTACTTTTG+AGG | + | chr1_4:20660219-20660238 | None:intergenic | 50.0% |
| TGGTCAGTTGGTTGCGTACT+TGG | - | chr1_4:20661052-20661071 | Msa0155380:intron | 50.0% | |
| TCACTGTTTCCTGGTGAGAG+TGG | - | chr1_4:20661179-20661198 | Msa0155380:intron | 50.0% | |
| GAGTGGAGTAGACCAACTTG+TGG | - | chr1_4:20661196-20661215 | Msa0155380:intron | 50.0% | |
| !! | ACCAAGAGGTTGGTGTGAAG+AGG | - | chr1_4:20663113-20663132 | Msa0155380:intron | 50.0% |
| ACCTCTTCACACCAACCTCT+TGG | + | chr1_4:20663117-20663136 | None:intergenic | 50.0% | |
| TGGTCTACTCCACTCTCACC+AGG | + | chr1_4:20661191-20661210 | None:intergenic | 55.0% | |
| CTCAAGTCTTCATCGGGTGG+AGG | + | chr1_4:20662071-20662090 | None:intergenic | 55.0% | |
| GCTCTCAAGTCTTCATCGGG+TGG | + | chr1_4:20662074-20662093 | None:intergenic | 55.0% | |
| !! | AGGTTGGTGTGAAGAGGTCC+AGG | - | chr1_4:20663119-20663138 | Msa0155380:intron | 55.0% |
| !! | CTGTGGTGTTGCCCCTAATG+AGG | - | chr1_4:20663309-20663328 | Msa0155380:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 20658274 | 20663417 | 20658274 | ID=Msa0155380;Name=Msa0155380 |
| chr1_4 | mRNA | 20658274 | 20663417 | 20658274 | ID=Msa0155380-mRNA-1;Parent=Msa0155380;Name=Msa0155380-mRNA-1;_AED=0.43;_eAED=0.50;_QI=0|0|0.2|0.8|0.25|0.4|5|0|102 |
| chr1_4 | exon | 20663413 | 20663417 | 20663413 | ID=Msa0155380-mRNA-1:exon:7522;Parent=Msa0155380-mRNA-1 |
| chr1_4 | exon | 20660526 | 20660700 | 20660526 | ID=Msa0155380-mRNA-1:exon:7521;Parent=Msa0155380-mRNA-1 |
| chr1_4 | exon | 20660462 | 20660512 | 20660462 | ID=Msa0155380-mRNA-1:exon:7520;Parent=Msa0155380-mRNA-1 |
| chr1_4 | exon | 20660180 | 20660220 | 20660180 | ID=Msa0155380-mRNA-1:exon:7519;Parent=Msa0155380-mRNA-1 |
| chr1_4 | exon | 20658274 | 20658310 | 20658274 | ID=Msa0155380-mRNA-1:exon:7518;Parent=Msa0155380-mRNA-1 |
| chr1_4 | CDS | 20663413 | 20663417 | 20663413 | ID=Msa0155380-mRNA-1:cds;Parent=Msa0155380-mRNA-1 |
| chr1_4 | CDS | 20660526 | 20660700 | 20660526 | ID=Msa0155380-mRNA-1:cds;Parent=Msa0155380-mRNA-1 |
| chr1_4 | CDS | 20660462 | 20660512 | 20660462 | ID=Msa0155380-mRNA-1:cds;Parent=Msa0155380-mRNA-1 |
| chr1_4 | CDS | 20660180 | 20660220 | 20660180 | ID=Msa0155380-mRNA-1:cds;Parent=Msa0155380-mRNA-1 |
| chr1_4 | CDS | 20658274 | 20658310 | 20658274 | ID=Msa0155380-mRNA-1:cds;Parent=Msa0155380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
