Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276310 | KAG5061825.1 | 83.019 | 53 | 9 | 0 | 30 | 82 | 179 | 231 | 2.46e-18 | 93.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276310 | A0A392PJ47 | 37.795 | 127 | 61 | 2 | 93 | 204 | 34 | 157 | 2.75e-17 | 85.5 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0155380 | Msa0276310 | 0.868097 | 8.406824e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0276310 | MtrunA17_Chr1g0194201 | 42.574 | 101 | 11 | 1 | 30 | 83 | 193 | 293 | 2.05e-13 | 68.2 |
Msa0276310 | MtrunA17_Chr8g0350311 | 43.158 | 95 | 7 | 1 | 35 | 82 | 262 | 356 | 4.03e-13 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 49 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATACACGTTTAGACAGTTTA+AGG | 0.163131 | 2_3:+8569722 | Msa0276310:intron |
TTTAAAGTTCAGGCAGTTAT+TGG | 0.206518 | 2_3:+8570000 | Msa0276310:CDS |
TATTAAACCTCAAAATTTAC+TGG | 0.291199 | 2_3:+8567799 | Msa0276310:CDS |
TCTTATCAGTCACTGTTTCC+TGG | 0.318560 | 2_3:+8568464 | Msa0276310:intron |
AGATAAACAATGTGCTCATT+TGG | 0.319034 | 2_3:+8569818 | Msa0276310:CDS |
TGAGATTTACTCTCCTTCTA+AGG | 0.373862 | 2_3:+8570107 | Msa0276310:CDS |
ATTGATACTGAGAAGATTGT+TGG | 0.390696 | 2_3:+8570242 | Msa0276310:CDS |
ATTCATAAGTTTATTGAAAG+AGG | 0.390719 | 2_3:-8565284 | None:intergenic |
CTTTGTATGATGGTTCCTAT+AGG | 0.404739 | 2_3:+8570031 | Msa0276310:CDS |
CATGGATGAGATTTGATTTG+AGG | 0.426647 | 2_3:-8568744 | None:intergenic |
GGACCCCATGCTTTGTATGA+TGG | 0.435370 | 2_3:+8570021 | Msa0276310:CDS |
ACAAACCCTTCTCACCCTAT+AGG | 0.443996 | 2_3:-8570046 | None:intergenic |
CCTTGATAATTTCCACAAGT+TGG | 0.452229 | 2_3:-8568502 | None:intergenic |
CAAATCTCATCCATGACATA+AGG | 0.460919 | 2_3:+8568752 | Msa0276310:CDS |
CTTTGGAAGTGCTAATGTCT+TGG | 0.461224 | 2_3:+8568136 | Msa0276310:CDS |
CAACTGAAGATATGCGACTT+TGG | 0.471231 | 2_3:+8568119 | Msa0276310:CDS |
CATCAGTTTCATCAGATGCT+TGG | 0.473349 | 2_3:-8569752 | None:intergenic |
TCATTTGGTTGCTGTAGCTA+AGG | 0.473734 | 2_3:+8569833 | Msa0276310:CDS |
TTTGTATGATGGTTCCTATA+GGG | 0.492577 | 2_3:+8570032 | Msa0276310:CDS |
CCAACTTGTGGAAATTATCA+AGG | 0.511188 | 2_3:+8568502 | Msa0276310:CDS |
GGTATTATGTAACTTGCTGA+AGG | 0.517658 | 2_3:+8566107 | Msa0276310:CDS |
AGGAACCATCATACAAAGCA+TGG | 0.519567 | 2_3:-8570026 | None:intergenic |
ATGCCACAACTTCTTAACCT+TGG | 0.524834 | 2_3:+8565383 | Msa0276310:five_prime_UTR |
TCACTGTTTCCTGGTGAGAG+TGG | 0.525574 | 2_3:+8568473 | Msa0276310:CDS |
TGTGAATGCAGGGCCATTGA+GGG | 0.529785 | 2_3:+8566006 | Msa0276310:intron |
ACATTACATACCTTATGTCA+TGG | 0.534209 | 2_3:-8568762 | None:intergenic |
GGGATCTTCATACAAAGGAC+TGG | 0.536572 | 2_3:+8566026 | Msa0276310:five_prime_UTR |
TACTGAGAAGATTGTTGGCT+CGG | 0.541038 | 2_3:+8570247 | Msa0276310:CDS |
TTGCTGAAGGCTTCACTCAT+CGG | 0.541696 | 2_3:+8566120 | Msa0276310:CDS |
TTGTGAATGCAGGGCCATTG+AGG | 0.549083 | 2_3:+8566005 | Msa0276310:intron |
TATCCAAGGTTAAGAAGTTG+TGG | 0.556489 | 2_3:-8565386 | None:intergenic |
ATGGTTCCTATAGGGTGAGA+AGG | 0.558535 | 2_3:+8570040 | Msa0276310:CDS |
GGAACCATCATACAAAGCAT+GGG | 0.561104 | 2_3:-8570025 | None:intergenic |
AAGTTACATAATACCAAACT+TGG | 0.576249 | 2_3:-8566099 | None:intergenic |
GTCGCATATCTTCAGTTGGT+GGG | 0.578193 | 2_3:-8568114 | None:intergenic |
TTTGTATGAAGATCCCTCAA+TGG | 0.579796 | 2_3:-8566019 | None:intergenic |
CCTCTTGTAATCATTATCCA+AGG | 0.580574 | 2_3:-8565400 | None:intergenic |
CAAAGTCGCATATCTTCAGT+TGG | 0.580954 | 2_3:-8568118 | None:intergenic |
GGATCTTCATACAAAGGACT+GGG | 0.581068 | 2_3:+8566027 | Msa0276310:five_prime_UTR |
TGGTCTACTCCACTCTCACC+AGG | 0.583110 | 2_3:-8568482 | None:intergenic |
TGGTTCCTATAGGGTGAGAA+GGG | 0.594607 | 2_3:+8570041 | Msa0276310:CDS |
GAATGTTTCACTTGATGATG+AGG | 0.600116 | 2_3:+8570217 | Msa0276310:CDS |
CCTTGGATAATGATTACAAG+AGG | 0.638954 | 2_3:+8565400 | Msa0276310:five_prime_UTR |
GGTTGATGCTTCACATACTG+AGG | 0.638982 | 2_3:+8570268 | Msa0276310:CDS |
ATTGAGGGATCTTCATACAA+AGG | 0.649501 | 2_3:+8566021 | Msa0276310:five_prime_UTR |
AGTCGCATATCTTCAGTTGG+TGG | 0.661802 | 2_3:-8568115 | None:intergenic |
GAGTGGAGTAGACCAACTTG+TGG | 0.666033 | 2_3:+8568490 | Msa0276310:CDS |
TGAGGTTTAATATCCCTGTG+AGG | 0.686498 | 2_3:-8567788 | None:intergenic |
GAACCATCATACAAAGCATG+GGG | 0.696724 | 2_3:-8570024 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTATATTATGTATCAT+TGG | - | chr2_3:8567041-8567060 | None:intergenic | 10.0% |
!!! | TTATAGTTTTTTCATTTTTT+TGG | + | chr2_3:8567327-8567346 | Msa0276310:intron | 10.0% |
!!! | TATAGTTTTTTCATTTTTTT+GGG | + | chr2_3:8567328-8567347 | Msa0276310:intron | 10.0% |
!!! | ATGTGTTTTTTTTTTTAATT+TGG | + | chr2_3:8567431-8567450 | Msa0276310:intron | 10.0% |
!!! | ATAAACATTTTTTTTTACAA+AGG | - | chr2_3:8569157-8569176 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAAAACTTTGT+TGG | - | chr2_3:8569396-8569415 | None:intergenic | 10.0% |
!!! | TTCAAAGATTTTTAAACTTA+AGG | + | chr2_3:8566346-8566365 | Msa0276310:intron | 15.0% |
!!! | TCAAAGATTTTTAAACTTAA+GGG | + | chr2_3:8566347-8566366 | Msa0276310:intron | 15.0% |
!! | AAATGAAAAGAACTTATTAT+AGG | - | chr2_3:8566378-8566397 | None:intergenic | 15.0% |
!!! | TTATGTAGTAATTTAGTTTT+TGG | + | chr2_3:8566557-8566576 | Msa0276310:intron | 15.0% |
!!! | ATTTGATATCAATCTTATTT+TGG | + | chr2_3:8566773-8566792 | Msa0276310:intron | 15.0% |
!!! | TTTGATATCAATCTTATTTT+GGG | + | chr2_3:8566774-8566793 | Msa0276310:intron | 15.0% |
!!! | TAAAAATCAACTTTGTTTTT+AGG | + | chr2_3:8566825-8566844 | Msa0276310:intron | 15.0% |
!! | AAAAAACACATGAAAATATT+AGG | - | chr2_3:8567422-8567441 | None:intergenic | 15.0% |
!!! | ATAGCTATTTGAATTTTATA+AGG | + | chr2_3:8568200-8568219 | Msa0276310:intron | 15.0% |
!! | AATTTAAACTCTGTATAATT+AGG | - | chr2_3:8568723-8568742 | None:intergenic | 15.0% |
!! | ATGTACATGTATTTATAAAT+CGG | + | chr2_3:8568842-8568861 | Msa0276310:intron | 15.0% |
!! | ATAGAAAAATATTACATGAT+GGG | + | chr2_3:8569265-8569284 | Msa0276310:intron | 15.0% |
!! | AAATTCATAAACTCAAATAA+AGG | - | chr2_3:8569661-8569680 | None:intergenic | 15.0% |
!!! | ATTTTCTTTGAAAAAGAATT+TGG | + | chr2_3:8569917-8569936 | Msa0276310:intron | 15.0% |
!!! | TTTTCTTTGAAAAAGAATTT+GGG | + | chr2_3:8569918-8569937 | Msa0276310:intron | 15.0% |
!!! | TTATTTGTTTTGAATTGTTA+AGG | + | chr2_3:8570154-8570173 | Msa0276310:intron | 15.0% |
!! | ATTCATAAGTTTATTGAAAG+AGG | - | chr2_3:8565287-8565306 | None:intergenic | 20.0% |
!!! | TTTGGTGTTATATTTGTTAA+CGG | + | chr2_3:8565567-8565586 | Msa0276310:intron | 20.0% |
!! | ACTATAAACAAAAAACGTAT+AGG | - | chr2_3:8566199-8566218 | None:intergenic | 20.0% |
!!! | AAACATAGCTAAATGATTTT+TGG | + | chr2_3:8566229-8566248 | Msa0276310:intron | 20.0% |
!! | GTTAAAAACGAAATTAAAGT+TGG | - | chr2_3:8566524-8566543 | None:intergenic | 20.0% |
!!! | TCAACAAAAATGAGTTTTTT+TGG | + | chr2_3:8566869-8566888 | Msa0276310:intron | 20.0% |
!!! | TTTTGGTTTATAATTGATGA+TGG | + | chr2_3:8566886-8566905 | Msa0276310:intron | 20.0% |
!! | GAAGTTTCATATAATATTTC+AGG | - | chr2_3:8567088-8567107 | None:intergenic | 20.0% |
!! | GAATATTTATATTGTGTCAT+TGG | + | chr2_3:8567234-8567253 | Msa0276310:intron | 20.0% |
!!! | TTCAAGTTATGTTATTTTGA+AGG | + | chr2_3:8567454-8567473 | Msa0276310:intron | 20.0% |
!!! | TTATGTTATTTTGAAGGATT+GGG | + | chr2_3:8567460-8567479 | Msa0276310:intron | 20.0% |
!!! | TTGTGTTATTTTGAAAGATT+GGG | + | chr2_3:8567629-8567648 | Msa0276310:intron | 20.0% |
!! | TATTAAACCTCAAAATTTAC+TGG | + | chr2_3:8567799-8567818 | Msa0276310:CDS | 20.0% |
!! | TGAAATGATCTAATAAAACA+TGG | - | chr2_3:8568018-8568037 | None:intergenic | 20.0% |
!!! | AGAATGAAGATAGTAATTTT+TGG | + | chr2_3:8568048-8568067 | Msa0276310:intron | 20.0% |
!!! | TATATGGTTTTACATGTTAA+AGG | + | chr2_3:8568232-8568251 | Msa0276310:intron | 20.0% |
!! | GAACAAATGTAAGATATATT+TGG | - | chr2_3:8568262-8568281 | None:intergenic | 20.0% |
!! | ATATATCTTACATTTGTTCT+AGG | + | chr2_3:8568263-8568282 | Msa0276310:intron | 20.0% |
!! | TTTGAATGAATTTAATGAGT+AGG | + | chr2_3:8569009-8569028 | Msa0276310:intron | 20.0% |
!!! | ACATTTTTTTTTACAAAGGT+TGG | - | chr2_3:8569153-8569172 | None:intergenic | 20.0% |
!!! | GCACATGTTTATATTTTATT+TGG | + | chr2_3:8569223-8569242 | Msa0276310:intron | 20.0% |
!! | CATAGAAAAATATTACATGA+TGG | + | chr2_3:8569264-8569283 | Msa0276310:intron | 20.0% |
!! | TAGAAAAATATTACATGATG+GGG | + | chr2_3:8569266-8569285 | Msa0276310:intron | 20.0% |
!!! | GAATTTTACTATATGTTACA+TGG | + | chr2_3:8569675-8569694 | Msa0276310:intron | 20.0% |
!! | TGTAGAATGTAGAATTTATT+TGG | + | chr2_3:8569881-8569900 | Msa0276310:intron | 20.0% |
!!! | TTTCTTTGAAAAAGAATTTG+GGG | + | chr2_3:8569919-8569938 | Msa0276310:intron | 20.0% |
!!! | TTTAATTTATCCATCTCATT+AGG | - | chr2_3:8569964-8569983 | None:intergenic | 20.0% |
!! | TAATGAGATGGATAAATTAA+AGG | + | chr2_3:8569963-8569982 | Msa0276310:intron | 20.0% |
!! | AATGAGATGGATAAATTAAA+GGG | + | chr2_3:8569964-8569983 | Msa0276310:intron | 20.0% |
!! | AAACAAATAACAAACAAATG+AGG | - | chr2_3:8570144-8570163 | None:intergenic | 20.0% |
!!! | CTTTTTAACTGTGTATAAGA+TGG | - | chr2_3:8565440-8565459 | None:intergenic | 25.0% |
!! | CTTCTTTGTTTATTCATGTT+TGG | + | chr2_3:8565499-8565518 | Msa0276310:intron | 25.0% |
!!! | ATTCTCTTTTTTGCTTTCAT+GGG | + | chr2_3:8565537-8565556 | Msa0276310:intron | 25.0% |
! | TCACTTAATAGTCAAAACTT+AGG | + | chr2_3:8565652-8565671 | Msa0276310:intron | 25.0% |
! | CACTTAATAGTCAAAACTTA+GGG | + | chr2_3:8565653-8565672 | Msa0276310:intron | 25.0% |
! | TACTAAGTAGAACTGTTAAA+AGG | - | chr2_3:8565894-8565913 | None:intergenic | 25.0% |
!!! | TTCTTGATGCTTTTTACAAA+GGG | + | chr2_3:8565962-8565981 | Msa0276310:intron | 25.0% |
! | AAGTTACATAATACCAAACT+TGG | - | chr2_3:8566102-8566121 | None:intergenic | 25.0% |
! | TTCCAAAAAGAGCTATTATA+AGG | + | chr2_3:8566286-8566305 | Msa0276310:intron | 25.0% |
!! | AACCTTATAATAGCTCTTTT+TGG | - | chr2_3:8566291-8566310 | None:intergenic | 25.0% |
!! | TATAAGGTTTTGCTTGTAAT+TGG | + | chr2_3:8566302-8566321 | Msa0276310:intron | 25.0% |
! | TATACTGAATTACATATGCA+AGG | - | chr2_3:8566586-8566605 | None:intergenic | 25.0% |
! | GCATATGTAATTCAGTATAA+AGG | + | chr2_3:8566587-8566606 | Msa0276310:intron | 25.0% |
!! | TTGATGTTGATTGTAATTTG+TGG | + | chr2_3:8566676-8566695 | Msa0276310:intron | 25.0% |
! | TGACATACTTATTATAGCAA+AGG | - | chr2_3:8566710-8566729 | None:intergenic | 25.0% |
! | TGCTGTATAATATCAGATTT+AGG | + | chr2_3:8566974-8566993 | Msa0276310:intron | 25.0% |
!! | ATATGAAACTTCTTTTGTCT+TGG | + | chr2_3:8567096-8567115 | Msa0276310:intron | 25.0% |
! | GGAATTAGATATATACCAAA+AGG | + | chr2_3:8567117-8567136 | Msa0276310:intron | 25.0% |
! | GACAAAAACAAAAGTTTAGA+TGG | - | chr2_3:8567172-8567191 | None:intergenic | 25.0% |
!! | ATCCTTTAGGTCTTTTTAAT+TGG | - | chr2_3:8567194-8567213 | None:intergenic | 25.0% |
! | TATTACATGAAACATCCTTT+AGG | - | chr2_3:8567207-8567226 | None:intergenic | 25.0% |
!!! | AGTTTTTTCATTTTTTTGGG+TGG | + | chr2_3:8567331-8567350 | Msa0276310:intron | 25.0% |
!!! | GTTTTTTCATTTTTTTGGGT+GGG | + | chr2_3:8567332-8567351 | Msa0276310:intron | 25.0% |
!!! | GTTATGTTATTTTGAAGGAT+TGG | + | chr2_3:8567459-8567478 | Msa0276310:intron | 25.0% |
! | TATATGACTTTCTTCACATT+AGG | + | chr2_3:8567570-8567589 | Msa0276310:intron | 25.0% |
!!! | GTTGTGTTATTTTGAAAGAT+TGG | + | chr2_3:8567628-8567647 | Msa0276310:intron | 25.0% |
! | AAATTTACTGGTATGTTCAT+TGG | + | chr2_3:8567811-8567830 | Msa0276310:intron | 25.0% |
!! | ATTAAATTTTCAGACATTGC+AGG | - | chr2_3:8567895-8567914 | None:intergenic | 25.0% |
!!! | ATGTTTTAGCATTTACAAGT+TGG | + | chr2_3:8567934-8567953 | Msa0276310:intron | 25.0% |
! | ATTACTATCTTCATTCTGTT+AGG | - | chr2_3:8568045-8568064 | None:intergenic | 25.0% |
!! | TTTTGATGCTGTATAAAAAC+AGG | + | chr2_3:8568079-8568098 | Msa0276310:intron | 25.0% |
! | TATAAGGACTAAATGCTATA+TGG | + | chr2_3:8568216-8568235 | Msa0276310:intron | 25.0% |
! | AAACGAAATGAAAAGATGAA+AGG | - | chr2_3:8568606-8568625 | None:intergenic | 25.0% |
! | AAATCAACTTTATGTCAGTT+GGG | - | chr2_3:8569040-8569059 | None:intergenic | 25.0% |
!!! | AAAGGTTGGTAACTATAATT+TGG | - | chr2_3:8569139-8569158 | None:intergenic | 25.0% |
! | TTTACAAAAATCATTCCATG+AGG | + | chr2_3:8569413-8569432 | Msa0276310:intron | 25.0% |
! | ATGCCAAATTTGATTGAATT+TGG | + | chr2_3:8569465-8569484 | Msa0276310:intron | 25.0% |
! | AGTCCAAATTCAATCAAATT+TGG | - | chr2_3:8569471-8569490 | None:intergenic | 25.0% |
! | TTGGACTTGAATAATTAGTT+TGG | + | chr2_3:8569484-8569503 | Msa0276310:intron | 25.0% |
! | ATATCATAAGTTATGTACCA+TGG | - | chr2_3:8569559-8569578 | None:intergenic | 25.0% |
! | TGGTACATAACTTATGATAT+TGG | + | chr2_3:8569559-8569578 | Msa0276310:intron | 25.0% |
! | ATAACAATATAGCTAACACA+TGG | - | chr2_3:8569616-8569635 | None:intergenic | 25.0% |
! | TATAATTAGAGTTGAGTTTG+TGG | + | chr2_3:8569633-8569652 | Msa0276310:intron | 25.0% |
! | ATGAGATGGATAAATTAAAG+GGG | + | chr2_3:8569965-8569984 | Msa0276310:intron | 25.0% |
TTAACTGTGTATAAGATGGA+AGG | - | chr2_3:8565436-8565455 | None:intergenic | 30.0% | |
ACATGAATAAACAAAGAAGC+TGG | - | chr2_3:8565498-8565517 | None:intergenic | 30.0% | |
!!! | GATTCTCTTTTTTGCTTTCA+TGG | + | chr2_3:8565536-8565555 | Msa0276310:intron | 30.0% |
TTGCATAAATCATGTAAGCA+AGG | - | chr2_3:8565618-8565637 | None:intergenic | 30.0% | |
AACAGCTAACATAGAAAGAT+AGG | + | chr2_3:8565760-8565779 | Msa0276310:intron | 30.0% | |
ACAGCTAACATAGAAAGATA+GGG | + | chr2_3:8565761-8565780 | Msa0276310:intron | 30.0% | |
! | TTAGTAGCTAGACTTTTTGT+TGG | + | chr2_3:8565908-8565927 | Msa0276310:intron | 30.0% |
! | TTGGAAAGAAAAGCACAATA+GGG | + | chr2_3:8565927-8565946 | Msa0276310:intron | 30.0% |
!! | GTTCTTGATGCTTTTTACAA+AGG | + | chr2_3:8565961-8565980 | Msa0276310:intron | 30.0% |
!! | TTTCTTTTGTTTGTGAATGC+AGG | + | chr2_3:8565995-8566014 | Msa0276310:intron | 30.0% |
!! | TTCTTTTGTTTGTGAATGCA+GGG | + | chr2_3:8565996-8566015 | Msa0276310:intron | 30.0% |
!!! | CTTTGTTTTTTGGATCATAG+CGG | - | chr2_3:8566076-8566095 | None:intergenic | 30.0% |
GCTATGATCCAAAAAACAAA+GGG | + | chr2_3:8566075-8566094 | Msa0276310:exon | 30.0% | |
CTATGATCCAAAAAACAAAG+GGG | + | chr2_3:8566076-8566095 | Msa0276310:exon | 30.0% | |
TGGAAGTTAGAAAATTGTCA+TGG | - | chr2_3:8566271-8566290 | None:intergenic | 30.0% | |
!!! | TCAACTTTGTTTTTAGGCTT+TGG | + | chr2_3:8566831-8566850 | Msa0276310:intron | 30.0% |
!! | TGGTTTATAATTGATGATGG+TGG | + | chr2_3:8566889-8566908 | Msa0276310:intron | 30.0% |
GATGCATAGCTAAAACATTA+TGG | + | chr2_3:8566996-8567015 | Msa0276310:intron | 30.0% | |
GTCCAATTAAAAAGACCTAA+AGG | + | chr2_3:8567189-8567208 | Msa0276310:intron | 30.0% | |
TCACATTAGGATTTGTAACT+TGG | + | chr2_3:8567583-8567602 | Msa0276310:intron | 30.0% | |
TCATAAATTCCCATACCATA+AGG | + | chr2_3:8567731-8567750 | Msa0276310:intron | 30.0% | |
CATAAATTCCCATACCATAA+GGG | + | chr2_3:8567732-8567751 | Msa0276310:intron | 30.0% | |
AAATCAAACCCTTATGGTAT+GGG | - | chr2_3:8567743-8567762 | None:intergenic | 30.0% | |
AAAATCAAACCCTTATGGTA+TGG | - | chr2_3:8567744-8567763 | None:intergenic | 30.0% | |
! | GAACATACCAGTAAATTTTG+AGG | - | chr2_3:8567809-8567828 | None:intergenic | 30.0% |
AAACAAACGAAAGGATTTCA+AGG | - | chr2_3:8568176-8568195 | None:intergenic | 30.0% | |
ACATTACATACCTTATGTCA+TGG | - | chr2_3:8568765-8568784 | None:intergenic | 30.0% | |
GTTTATGTAATGAAAGAGCA+AGG | - | chr2_3:8568821-8568840 | None:intergenic | 30.0% | |
! | TGATTTCTTCATCTTTTGAG+TGG | + | chr2_3:8568963-8568982 | Msa0276310:intron | 30.0% |
TTCATTCAAACTGAATGTGA+AGG | - | chr2_3:8568999-8569018 | None:intergenic | 30.0% | |
CAAATCAACTTTATGTCAGT+TGG | - | chr2_3:8569041-8569060 | None:intergenic | 30.0% | |
! | CAACTGACATAAAGTTGATT+TGG | + | chr2_3:8569039-8569058 | Msa0276310:intron | 30.0% |
TGCATAATATGATTGATGTC+TGG | + | chr2_3:8569101-8569120 | Msa0276310:intron | 30.0% | |
TGAGAGCTTATTAAGGATAA+AGG | + | chr2_3:8569347-8569366 | Msa0276310:intron | 30.0% | |
TTCAATCAAATTTGGCATGT+AGG | - | chr2_3:8569463-8569482 | None:intergenic | 30.0% | |
AAAATGAAAATAGGGAACCA+TGG | + | chr2_3:8569539-8569558 | Msa0276310:intron | 30.0% | |
ATACACGTTTAGACAGTTTA+AGG | + | chr2_3:8569722-8569741 | Msa0276310:intron | 30.0% | |
AGATAAACAATGTGCTCATT+TGG | + | chr2_3:8569818-8569837 | Msa0276310:CDS | 30.0% | |
!!! | GAAGATGCTTTTTAAAGTTC+AGG | + | chr2_3:8569990-8570009 | Msa0276310:CDS | 30.0% |
! | TTTAAAGTTCAGGCAGTTAT+TGG | + | chr2_3:8570000-8570019 | Msa0276310:CDS | 30.0% |
TTTGTATGATGGTTCCTATA+GGG | + | chr2_3:8570032-8570051 | Msa0276310:CDS | 30.0% | |
GGTGTAAAAATTACCTTAGA+AGG | - | chr2_3:8570123-8570142 | None:intergenic | 30.0% | |
!! | GTTAAGGCTATGTTTTTCAA+TGG | + | chr2_3:8570170-8570189 | Msa0276310:intron | 30.0% |
TGGACCTGAATTTATCATTT+AGG | + | chr2_3:8570190-8570209 | Msa0276310:intron | 30.0% | |
AACGCCTAAATGATAAATTC+AGG | - | chr2_3:8570197-8570216 | None:intergenic | 30.0% | |
ATTGATACTGAGAAGATTGT+TGG | + | chr2_3:8570242-8570261 | Msa0276310:CDS | 30.0% | |
TATCCAAGGTTAAGAAGTTG+TGG | - | chr2_3:8565389-8565408 | None:intergenic | 35.0% | |
CCTCTTGTAATCATTATCCA+AGG | - | chr2_3:8565403-8565422 | None:intergenic | 35.0% | |
CCTTGGATAATGATTACAAG+AGG | + | chr2_3:8565400-8565419 | Msa0276310:five_prime_UTR | 35.0% | |
! | GTGTTATATTTGTTAACGGC+AGG | + | chr2_3:8565571-8565590 | Msa0276310:intron | 35.0% |
AACATAGAAAGATAGGGACA+TGG | + | chr2_3:8565767-8565786 | Msa0276310:intron | 35.0% | |
ATGGTTAATGAAGGTAACCT+AGG | + | chr2_3:8565786-8565805 | Msa0276310:intron | 35.0% | |
! | GTTGGAAAGAAAAGCACAAT+AGG | + | chr2_3:8565926-8565945 | Msa0276310:intron | 35.0% |
TTTGTATGAAGATCCCTCAA+TGG | - | chr2_3:8566022-8566041 | None:intergenic | 35.0% | |
ATTGAGGGATCTTCATACAA+AGG | + | chr2_3:8566021-8566040 | Msa0276310:five_prime_UTR | 35.0% | |
CGCTATGATCCAAAAAACAA+AGG | + | chr2_3:8566074-8566093 | Msa0276310:exon | 35.0% | |
!! | GGTATTATGTAACTTGCTGA+AGG | + | chr2_3:8566107-8566126 | Msa0276310:CDS | 35.0% |
!! | TGTTGAATGAAAGAAGCATC+AGG | + | chr2_3:8566430-8566449 | Msa0276310:intron | 35.0% |
TAGTGATTGTGATTCCTTTG+TGG | + | chr2_3:8566625-8566644 | Msa0276310:intron | 35.0% | |
ATTGTGATTCCTTTGTGGAA+AGG | + | chr2_3:8566630-8566649 | Msa0276310:intron | 35.0% | |
ATTCCTTTGTGGAAAGGAAT+TGG | + | chr2_3:8566636-8566655 | Msa0276310:intron | 35.0% | |
TCAGTTTGATTGTGTTTGAC+AGG | + | chr2_3:8566730-8566749 | Msa0276310:intron | 35.0% | |
!!! | ACTTTGTTTTTAGGCTTTGG+TGG | + | chr2_3:8566834-8566853 | Msa0276310:intron | 35.0% |
GAACGCAAAGATTTCTCAAA+AGG | + | chr2_3:8566911-8566930 | Msa0276310:intron | 35.0% | |
TACTTTCTCTCTCCTTCATT+CGG | - | chr2_3:8566939-8566958 | None:intergenic | 35.0% | |
! | ATGGACTAACTACAAAGCAA+CGG | - | chr2_3:8567153-8567172 | None:intergenic | 35.0% |
! | TAGCCTTTCCTCAAAAGTAT+AGG | + | chr2_3:8567502-8567521 | Msa0276310:intron | 35.0% |
! | CTTTCCTCAAAAGTATAGGT+CGG | + | chr2_3:8567506-8567525 | Msa0276310:intron | 35.0% |
AAGTCTTCCATACCTTCATT+TGG | + | chr2_3:8567691-8567710 | Msa0276310:intron | 35.0% | |
AAACAGACCAAATGAAGGTA+TGG | - | chr2_3:8567701-8567720 | None:intergenic | 35.0% | |
CCAAAAAACAGACCAAATGA+AGG | - | chr2_3:8567706-8567725 | None:intergenic | 35.0% | |
!!! | CCTTCATTTGGTCTGTTTTT+TGG | + | chr2_3:8567703-8567722 | Msa0276310:intron | 35.0% |
!! | ACCATAAGGGTTTGATTTTG+AGG | + | chr2_3:8567745-8567764 | Msa0276310:intron | 35.0% |
ACCTCAAAATCAAACCCTTA+TGG | - | chr2_3:8567749-8567768 | None:intergenic | 35.0% | |
!!! | AGGGTTTGATTTTGAGGTTT+TGG | + | chr2_3:8567751-8567770 | Msa0276310:intron | 35.0% |
! | GTGCATTCGTTGATTGATTT+GGG | + | chr2_3:8567959-8567978 | Msa0276310:intron | 35.0% |
!! | TGCATTCGTTGATTGATTTG+GGG | + | chr2_3:8567960-8567979 | Msa0276310:intron | 35.0% |
GCTATTGCAAAACAAACGAA+AGG | - | chr2_3:8568185-8568204 | None:intergenic | 35.0% | |
GTACACAAAAGCTAGTTAAC+TGG | - | chr2_3:8568387-8568406 | None:intergenic | 35.0% | |
! | CCTTGATAATTTCCACAAGT+TGG | - | chr2_3:8568505-8568524 | None:intergenic | 35.0% |
CCAACTTGTGGAAATTATCA+AGG | + | chr2_3:8568502-8568521 | Msa0276310:CDS | 35.0% | |
ATATGTTCAAGCTAGTAGCA+AGG | - | chr2_3:8568570-8568589 | None:intergenic | 35.0% | |
AAGTGAACCACATGAAACTT+CGG | - | chr2_3:8568654-8568673 | None:intergenic | 35.0% | |
ACTTGATTTCTTCCCTTGTT+GGG | - | chr2_3:8568692-8568711 | None:intergenic | 35.0% | |
!! | CATGGATGAGATTTGATTTG+AGG | - | chr2_3:8568747-8568766 | None:intergenic | 35.0% |
CAAATCTCATCCATGACATA+AGG | + | chr2_3:8568752-8568771 | Msa0276310:CDS | 35.0% | |
GGGATAATAAATGCTGAAGT+AGG | + | chr2_3:8569286-8569305 | Msa0276310:intron | 35.0% | |
AAGTAGGCAATCTTCAAAGT+AGG | + | chr2_3:8569302-8569321 | Msa0276310:intron | 35.0% | |
ATAAGCTCTCAAGTCTTCAT+CGG | - | chr2_3:8569338-8569357 | None:intergenic | 35.0% | |
GAAGACTTGAGAGCTTATTA+AGG | + | chr2_3:8569340-8569359 | Msa0276310:intron | 35.0% | |
AAAATCATTCCATGAGGTCT+AGG | + | chr2_3:8569419-8569438 | Msa0276310:intron | 35.0% | |
! | TTTTTGTTACCTAGACCTCA+TGG | - | chr2_3:8569431-8569450 | None:intergenic | 35.0% |
AGTTTGGTCAAGTTACGAAT+TGG | + | chr2_3:8569500-8569519 | Msa0276310:intron | 35.0% | |
!!! | TGCTGTAGCTAAGGTTTTTT+TGG | + | chr2_3:8569842-8569861 | Msa0276310:intron | 35.0% |
TGGATTTCATCCTAATGAGA+TGG | + | chr2_3:8569951-8569970 | Msa0276310:intron | 35.0% | |
CTTTGTATGATGGTTCCTAT+AGG | + | chr2_3:8570031-8570050 | Msa0276310:CDS | 35.0% | |
TGAGATTTACTCTCCTTCTA+AGG | + | chr2_3:8570107-8570126 | Msa0276310:CDS | 35.0% | |
!! | GAATGTTTCACTTGATGATG+AGG | + | chr2_3:8570217-8570236 | Msa0276310:CDS | 35.0% |
ATGCCACAACTTCTTAACCT+TGG | + | chr2_3:8565383-8565402 | Msa0276310:five_prime_UTR | 40.0% | |
! | GCTTTCATGGGAAATGCTTT+TGG | + | chr2_3:8565549-8565568 | Msa0276310:intron | 40.0% |
GATAGGGACATGGTTAATGA+AGG | + | chr2_3:8565777-8565796 | Msa0276310:intron | 40.0% | |
GGATCTTCATACAAAGGACT+GGG | + | chr2_3:8566027-8566046 | Msa0276310:five_prime_UTR | 40.0% | |
!!! | TGTTTTTTGGATCATAGCGG+TGG | - | chr2_3:8566073-8566092 | None:intergenic | 40.0% |
!!! | AACTTGGCCCCTTTGTTTTT+TGG | - | chr2_3:8566086-8566105 | None:intergenic | 40.0% |
AAAAACAAAGGGGCCAAGTT+TGG | + | chr2_3:8566086-8566105 | Msa0276310:CDS | 40.0% | |
AAGTTGGAAGACAGTAGTGA+AGG | - | chr2_3:8566508-8566527 | None:intergenic | 40.0% | |
CTACCAATTCCTTTCCACAA+AGG | - | chr2_3:8566642-8566661 | None:intergenic | 40.0% | |
TTGATTGTGTTTGACAGGTG+TGG | + | chr2_3:8566735-8566754 | Msa0276310:intron | 40.0% | |
! | AACGGTTCTTCTCTTCCTTT+TGG | - | chr2_3:8567135-8567154 | None:intergenic | 40.0% |
!! | CGACCTATACTTTTGAGGAA+AGG | - | chr2_3:8567508-8567527 | None:intergenic | 40.0% |
! | TCTGCGTTTTTAAACCTCAC+AGG | + | chr2_3:8567774-8567793 | Msa0276310:CDS | 40.0% |
! | CTGCGTTTTTAAACCTCACA+GGG | + | chr2_3:8567775-8567794 | Msa0276310:CDS | 40.0% |
TGAGGTTTAATATCCCTGTG+AGG | - | chr2_3:8567791-8567810 | None:intergenic | 40.0% | |
! | CGTGCATTCGTTGATTGATT+TGG | + | chr2_3:8567958-8567977 | Msa0276310:intron | 40.0% |
CAAAGTCGCATATCTTCAGT+TGG | - | chr2_3:8568121-8568140 | None:intergenic | 40.0% | |
CAACTGAAGATATGCGACTT+TGG | + | chr2_3:8568119-8568138 | Msa0276310:CDS | 40.0% | |
!! | CTTTGGAAGTGCTAATGTCT+TGG | + | chr2_3:8568136-8568155 | Msa0276310:CDS | 40.0% |
AGAGCTCCTGAGCTTATATT+CGG | + | chr2_3:8568292-8568311 | Msa0276310:intron | 40.0% | |
!! | GTACTTGGTGAACTTTTGCT+TGG | + | chr2_3:8568361-8568380 | Msa0276310:intron | 40.0% |
!!! | AACTAGCTTTTGTGTACGCT+TGG | + | chr2_3:8568390-8568409 | Msa0276310:intron | 40.0% |
TCTTATCAGTCACTGTTTCC+TGG | + | chr2_3:8568464-8568483 | Msa0276310:intron | 40.0% | |
GTTCATTCCGAAGTTTCATG+TGG | + | chr2_3:8568644-8568663 | Msa0276310:intron | 40.0% | |
CTTGATTTCTTCCCTTGTTG+GGG | - | chr2_3:8568691-8568710 | None:intergenic | 40.0% | |
CACTTGATTTCTTCCCTTGT+TGG | - | chr2_3:8568693-8568712 | None:intergenic | 40.0% | |
TAAGCTCTCAAGTCTTCATC+GGG | - | chr2_3:8569337-8569356 | None:intergenic | 40.0% | |
!!! | TGTTGCTTTTGACACTGACA+TGG | + | chr2_3:8569785-8569804 | Msa0276310:CDS | 40.0% |
!!! | GTTGCTTTTGACACTGACAT+GGG | + | chr2_3:8569786-8569805 | Msa0276310:CDS | 40.0% |
TCATTTGGTTGCTGTAGCTA+AGG | + | chr2_3:8569833-8569852 | Msa0276310:CDS | 40.0% | |
! | AGAATTTGGGGCGATAATGT+TGG | + | chr2_3:8569931-8569950 | Msa0276310:intron | 40.0% |
GAACCATCATACAAAGCATG+GGG | - | chr2_3:8570027-8570046 | None:intergenic | 40.0% | |
GGAACCATCATACAAAGCAT+GGG | - | chr2_3:8570028-8570047 | None:intergenic | 40.0% | |
AGGAACCATCATACAAAGCA+TGG | - | chr2_3:8570029-8570048 | None:intergenic | 40.0% | |
! | TACTGAGAAGATTGTTGGCT+CGG | + | chr2_3:8570247-8570266 | Msa0276310:CDS | 40.0% |
GCAAGAAAGCTAGTAAGCCT+AGG | - | chr2_3:8565806-8565825 | None:intergenic | 45.0% | |
GGGATCTTCATACAAAGGAC+TGG | + | chr2_3:8566026-8566045 | Msa0276310:five_prime_UTR | 45.0% | |
TTGCTGAAGGCTTCACTCAT+CGG | + | chr2_3:8566120-8566139 | Msa0276310:CDS | 45.0% | |
ATTGTGTTTGACAGGTGTGG+TGG | + | chr2_3:8566738-8566757 | Msa0276310:intron | 45.0% | |
TCTCAAAAGGAGCCGAATGA+AGG | + | chr2_3:8566924-8566943 | Msa0276310:intron | 45.0% | |
! | CATGCCGACCTATACTTTTG+AGG | - | chr2_3:8567513-8567532 | None:intergenic | 45.0% |
GTCGCATATCTTCAGTTGGT+GGG | - | chr2_3:8568117-8568136 | None:intergenic | 45.0% | |
AGTCGCATATCTTCAGTTGG+TGG | - | chr2_3:8568118-8568137 | None:intergenic | 45.0% | |
GTTGCACCGAATATAAGCTC+AGG | - | chr2_3:8568301-8568320 | None:intergenic | 45.0% | |
ACACCACAACCATTGACATC+TGG | + | chr2_3:8568326-8568345 | Msa0276310:intron | 45.0% | |
TGACCAGATGTCAATGGTTG+TGG | - | chr2_3:8568332-8568351 | None:intergenic | 45.0% | |
ACCATTGACATCTGGTCAGT+TGG | + | chr2_3:8568334-8568353 | Msa0276310:intron | 45.0% | |
ACCAACTGACCAGATGTCAA+TGG | - | chr2_3:8568338-8568357 | None:intergenic | 45.0% | |
GTTTCATGTGGTTCACTTGC+AGG | + | chr2_3:8568656-8568675 | Msa0276310:intron | 45.0% | |
! | GTGGTTCACTTGCAGGTTTT+AGG | + | chr2_3:8568663-8568682 | Msa0276310:intron | 45.0% |
!!! | AGGTTTTAGGTACCCCAACA+AGG | + | chr2_3:8568676-8568695 | Msa0276310:intron | 45.0% |
!!! | GGTTTTAGGTACCCCAACAA+GGG | + | chr2_3:8568677-8568696 | Msa0276310:intron | 45.0% |
ATGGTTCCTATAGGGTGAGA+AGG | + | chr2_3:8570040-8570059 | Msa0276310:CDS | 45.0% | |
TGGTTCCTATAGGGTGAGAA+GGG | + | chr2_3:8570041-8570060 | Msa0276310:CDS | 45.0% | |
ACAAACCCTTCTCACCCTAT+AGG | - | chr2_3:8570049-8570068 | None:intergenic | 45.0% | |
! | GGTTGATGCTTCACATACTG+AGG | + | chr2_3:8570268-8570287 | Msa0276310:CDS | 45.0% |
!! | AAAAAAATAAAAATGAAAAT+AGG | + | chr2_3:8569530-8569549 | Msa0276310:intron | 5.0% |
!! | AAAAAATAAAAATGAAAATA+GGG | + | chr2_3:8569531-8569550 | Msa0276310:intron | 5.0% |
TTGTGAATGCAGGGCCATTG+AGG | + | chr2_3:8566005-8566024 | Msa0276310:intron | 50.0% | |
TGTGAATGCAGGGCCATTGA+GGG | + | chr2_3:8566006-8566025 | Msa0276310:intron | 50.0% | |
TGGTCAGTTGGTTGCGTACT+TGG | + | chr2_3:8568346-8568365 | Msa0276310:intron | 50.0% | |
TCACTGTTTCCTGGTGAGAG+TGG | + | chr2_3:8568473-8568492 | Msa0276310:CDS | 50.0% | |
GAGTGGAGTAGACCAACTTG+TGG | + | chr2_3:8568490-8568509 | Msa0276310:CDS | 50.0% | |
GGACCCCATGCTTTGTATGA+TGG | + | chr2_3:8570021-8570040 | Msa0276310:CDS | 50.0% | |
TGGTCTACTCCACTCTCACC+AGG | - | chr2_3:8568485-8568504 | None:intergenic | 55.0% | |
CTCAAGTCTTCATCGGGTGG+AGG | - | chr2_3:8569331-8569350 | None:intergenic | 55.0% | |
GCTCTCAAGTCTTCATCGGG+TGG | - | chr2_3:8569334-8569353 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 8565264 | 8570304 | 8565264 | ID=Msa0276310;Name=Msa0276310 |
chr2_3 | mRNA | 8565264 | 8570304 | 8565264 | ID=Msa0276310-mRNA-1;Parent=Msa0276310;Name=Msa0276310-mRNA-1;_AED=0.44;_eAED=0.65;_QI=219|0.25|0.44|0.88|0.5|0.77|9|0|212 |
chr2_3 | exon | 8565264 | 8565421 | 8565264 | ID=Msa0276310-mRNA-1:exon:3824;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8566017 | 8566141 | 8566017 | ID=Msa0276310-mRNA-1:exon:3825;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8567753 | 8567820 | 8567753 | ID=Msa0276310-mRNA-1:exon:3826;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8568101 | 8568157 | 8568101 | ID=Msa0276310-mRNA-1:exon:3827;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8568473 | 8568523 | 8568473 | ID=Msa0276310-mRNA-1:exon:3828;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8568733 | 8568773 | 8568733 | ID=Msa0276310-mRNA-1:exon:3829;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8569734 | 8569854 | 8569734 | ID=Msa0276310-mRNA-1:exon:3830;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8569985 | 8570128 | 8569985 | ID=Msa0276310-mRNA-1:exon:3831;Parent=Msa0276310-mRNA-1 |
chr2_3 | exon | 8570212 | 8570304 | 8570212 | ID=Msa0276310-mRNA-1:exon:3832;Parent=Msa0276310-mRNA-1 |
chr2_3 | five_prime_UTR | 8565264 | 8565421 | 8565264 | ID=Msa0276310-mRNA-1:five_prime_utr;Parent=Msa0276310-mRNA-1 |
chr2_3 | five_prime_UTR | 8566017 | 8566077 | 8566017 | ID=Msa0276310-mRNA-1:five_prime_utr;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8566078 | 8566141 | 8566078 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8567753 | 8567820 | 8567753 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8568101 | 8568157 | 8568101 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8568473 | 8568523 | 8568473 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8568733 | 8568773 | 8568733 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8569734 | 8569854 | 8569734 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8569985 | 8570128 | 8569985 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
chr2_3 | CDS | 8570212 | 8570304 | 8570212 | ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1 |
Gene Sequence |
Protein sequence |