AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276310 MtrunA17_Chr1g0194201 42.574 101 11 1 30 83 193 293 2.05e-13 68.2
Msa0276310 MtrunA17_Chr8g0350311 43.158 95 7 1 35 82 262 356 4.03e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 49 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACGTTTAGACAGTTTA+AGG 0.163131 2_3:+8569722 Msa0276310:intron
TTTAAAGTTCAGGCAGTTAT+TGG 0.206518 2_3:+8570000 Msa0276310:CDS
TATTAAACCTCAAAATTTAC+TGG 0.291199 2_3:+8567799 Msa0276310:CDS
TCTTATCAGTCACTGTTTCC+TGG 0.318560 2_3:+8568464 Msa0276310:intron
AGATAAACAATGTGCTCATT+TGG 0.319034 2_3:+8569818 Msa0276310:CDS
TGAGATTTACTCTCCTTCTA+AGG 0.373862 2_3:+8570107 Msa0276310:CDS
ATTGATACTGAGAAGATTGT+TGG 0.390696 2_3:+8570242 Msa0276310:CDS
ATTCATAAGTTTATTGAAAG+AGG 0.390719 2_3:-8565284 None:intergenic
CTTTGTATGATGGTTCCTAT+AGG 0.404739 2_3:+8570031 Msa0276310:CDS
CATGGATGAGATTTGATTTG+AGG 0.426647 2_3:-8568744 None:intergenic
GGACCCCATGCTTTGTATGA+TGG 0.435370 2_3:+8570021 Msa0276310:CDS
ACAAACCCTTCTCACCCTAT+AGG 0.443996 2_3:-8570046 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 2_3:-8568502 None:intergenic
CAAATCTCATCCATGACATA+AGG 0.460919 2_3:+8568752 Msa0276310:CDS
CTTTGGAAGTGCTAATGTCT+TGG 0.461224 2_3:+8568136 Msa0276310:CDS
CAACTGAAGATATGCGACTT+TGG 0.471231 2_3:+8568119 Msa0276310:CDS
CATCAGTTTCATCAGATGCT+TGG 0.473349 2_3:-8569752 None:intergenic
TCATTTGGTTGCTGTAGCTA+AGG 0.473734 2_3:+8569833 Msa0276310:CDS
TTTGTATGATGGTTCCTATA+GGG 0.492577 2_3:+8570032 Msa0276310:CDS
CCAACTTGTGGAAATTATCA+AGG 0.511188 2_3:+8568502 Msa0276310:CDS
GGTATTATGTAACTTGCTGA+AGG 0.517658 2_3:+8566107 Msa0276310:CDS
AGGAACCATCATACAAAGCA+TGG 0.519567 2_3:-8570026 None:intergenic
ATGCCACAACTTCTTAACCT+TGG 0.524834 2_3:+8565383 Msa0276310:five_prime_UTR
TCACTGTTTCCTGGTGAGAG+TGG 0.525574 2_3:+8568473 Msa0276310:CDS
TGTGAATGCAGGGCCATTGA+GGG 0.529785 2_3:+8566006 Msa0276310:intron
ACATTACATACCTTATGTCA+TGG 0.534209 2_3:-8568762 None:intergenic
GGGATCTTCATACAAAGGAC+TGG 0.536572 2_3:+8566026 Msa0276310:five_prime_UTR
TACTGAGAAGATTGTTGGCT+CGG 0.541038 2_3:+8570247 Msa0276310:CDS
TTGCTGAAGGCTTCACTCAT+CGG 0.541696 2_3:+8566120 Msa0276310:CDS
TTGTGAATGCAGGGCCATTG+AGG 0.549083 2_3:+8566005 Msa0276310:intron
TATCCAAGGTTAAGAAGTTG+TGG 0.556489 2_3:-8565386 None:intergenic
ATGGTTCCTATAGGGTGAGA+AGG 0.558535 2_3:+8570040 Msa0276310:CDS
GGAACCATCATACAAAGCAT+GGG 0.561104 2_3:-8570025 None:intergenic
AAGTTACATAATACCAAACT+TGG 0.576249 2_3:-8566099 None:intergenic
GTCGCATATCTTCAGTTGGT+GGG 0.578193 2_3:-8568114 None:intergenic
TTTGTATGAAGATCCCTCAA+TGG 0.579796 2_3:-8566019 None:intergenic
CCTCTTGTAATCATTATCCA+AGG 0.580574 2_3:-8565400 None:intergenic
CAAAGTCGCATATCTTCAGT+TGG 0.580954 2_3:-8568118 None:intergenic
GGATCTTCATACAAAGGACT+GGG 0.581068 2_3:+8566027 Msa0276310:five_prime_UTR
TGGTCTACTCCACTCTCACC+AGG 0.583110 2_3:-8568482 None:intergenic
TGGTTCCTATAGGGTGAGAA+GGG 0.594607 2_3:+8570041 Msa0276310:CDS
GAATGTTTCACTTGATGATG+AGG 0.600116 2_3:+8570217 Msa0276310:CDS
CCTTGGATAATGATTACAAG+AGG 0.638954 2_3:+8565400 Msa0276310:five_prime_UTR
GGTTGATGCTTCACATACTG+AGG 0.638982 2_3:+8570268 Msa0276310:CDS
ATTGAGGGATCTTCATACAA+AGG 0.649501 2_3:+8566021 Msa0276310:five_prime_UTR
AGTCGCATATCTTCAGTTGG+TGG 0.661802 2_3:-8568115 None:intergenic
GAGTGGAGTAGACCAACTTG+TGG 0.666033 2_3:+8568490 Msa0276310:CDS
TGAGGTTTAATATCCCTGTG+AGG 0.686498 2_3:-8567788 None:intergenic
GAACCATCATACAAAGCATG+GGG 0.696724 2_3:-8570024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATATTATGTATCAT+TGG - chr2_3:8567041-8567060 None:intergenic 10.0%
!!! TTATAGTTTTTTCATTTTTT+TGG + chr2_3:8567327-8567346 Msa0276310:intron 10.0%
!!! TATAGTTTTTTCATTTTTTT+GGG + chr2_3:8567328-8567347 Msa0276310:intron 10.0%
!!! ATGTGTTTTTTTTTTTAATT+TGG + chr2_3:8567431-8567450 Msa0276310:intron 10.0%
!!! ATAAACATTTTTTTTTACAA+AGG - chr2_3:8569157-8569176 None:intergenic 10.0%
!! AAAAAAAAAAAAAACTTTGT+TGG - chr2_3:8569396-8569415 None:intergenic 10.0%
!!! TTCAAAGATTTTTAAACTTA+AGG + chr2_3:8566346-8566365 Msa0276310:intron 15.0%
!!! TCAAAGATTTTTAAACTTAA+GGG + chr2_3:8566347-8566366 Msa0276310:intron 15.0%
!! AAATGAAAAGAACTTATTAT+AGG - chr2_3:8566378-8566397 None:intergenic 15.0%
!!! TTATGTAGTAATTTAGTTTT+TGG + chr2_3:8566557-8566576 Msa0276310:intron 15.0%
!!! ATTTGATATCAATCTTATTT+TGG + chr2_3:8566773-8566792 Msa0276310:intron 15.0%
!!! TTTGATATCAATCTTATTTT+GGG + chr2_3:8566774-8566793 Msa0276310:intron 15.0%
!!! TAAAAATCAACTTTGTTTTT+AGG + chr2_3:8566825-8566844 Msa0276310:intron 15.0%
!! AAAAAACACATGAAAATATT+AGG - chr2_3:8567422-8567441 None:intergenic 15.0%
!!! ATAGCTATTTGAATTTTATA+AGG + chr2_3:8568200-8568219 Msa0276310:intron 15.0%
!! AATTTAAACTCTGTATAATT+AGG - chr2_3:8568723-8568742 None:intergenic 15.0%
!! ATGTACATGTATTTATAAAT+CGG + chr2_3:8568842-8568861 Msa0276310:intron 15.0%
!! ATAGAAAAATATTACATGAT+GGG + chr2_3:8569265-8569284 Msa0276310:intron 15.0%
!! AAATTCATAAACTCAAATAA+AGG - chr2_3:8569661-8569680 None:intergenic 15.0%
!!! ATTTTCTTTGAAAAAGAATT+TGG + chr2_3:8569917-8569936 Msa0276310:intron 15.0%
!!! TTTTCTTTGAAAAAGAATTT+GGG + chr2_3:8569918-8569937 Msa0276310:intron 15.0%
!!! TTATTTGTTTTGAATTGTTA+AGG + chr2_3:8570154-8570173 Msa0276310:intron 15.0%
!! ATTCATAAGTTTATTGAAAG+AGG - chr2_3:8565287-8565306 None:intergenic 20.0%
!!! TTTGGTGTTATATTTGTTAA+CGG + chr2_3:8565567-8565586 Msa0276310:intron 20.0%
!! ACTATAAACAAAAAACGTAT+AGG - chr2_3:8566199-8566218 None:intergenic 20.0%
!!! AAACATAGCTAAATGATTTT+TGG + chr2_3:8566229-8566248 Msa0276310:intron 20.0%
!! GTTAAAAACGAAATTAAAGT+TGG - chr2_3:8566524-8566543 None:intergenic 20.0%
!!! TCAACAAAAATGAGTTTTTT+TGG + chr2_3:8566869-8566888 Msa0276310:intron 20.0%
!!! TTTTGGTTTATAATTGATGA+TGG + chr2_3:8566886-8566905 Msa0276310:intron 20.0%
!! GAAGTTTCATATAATATTTC+AGG - chr2_3:8567088-8567107 None:intergenic 20.0%
!! GAATATTTATATTGTGTCAT+TGG + chr2_3:8567234-8567253 Msa0276310:intron 20.0%
!!! TTCAAGTTATGTTATTTTGA+AGG + chr2_3:8567454-8567473 Msa0276310:intron 20.0%
!!! TTATGTTATTTTGAAGGATT+GGG + chr2_3:8567460-8567479 Msa0276310:intron 20.0%
!!! TTGTGTTATTTTGAAAGATT+GGG + chr2_3:8567629-8567648 Msa0276310:intron 20.0%
!! TATTAAACCTCAAAATTTAC+TGG + chr2_3:8567799-8567818 Msa0276310:CDS 20.0%
!! TGAAATGATCTAATAAAACA+TGG - chr2_3:8568018-8568037 None:intergenic 20.0%
!!! AGAATGAAGATAGTAATTTT+TGG + chr2_3:8568048-8568067 Msa0276310:intron 20.0%
!!! TATATGGTTTTACATGTTAA+AGG + chr2_3:8568232-8568251 Msa0276310:intron 20.0%
!! GAACAAATGTAAGATATATT+TGG - chr2_3:8568262-8568281 None:intergenic 20.0%
!! ATATATCTTACATTTGTTCT+AGG + chr2_3:8568263-8568282 Msa0276310:intron 20.0%
!! TTTGAATGAATTTAATGAGT+AGG + chr2_3:8569009-8569028 Msa0276310:intron 20.0%
!!! ACATTTTTTTTTACAAAGGT+TGG - chr2_3:8569153-8569172 None:intergenic 20.0%
!!! GCACATGTTTATATTTTATT+TGG + chr2_3:8569223-8569242 Msa0276310:intron 20.0%
!! CATAGAAAAATATTACATGA+TGG + chr2_3:8569264-8569283 Msa0276310:intron 20.0%
!! TAGAAAAATATTACATGATG+GGG + chr2_3:8569266-8569285 Msa0276310:intron 20.0%
!!! GAATTTTACTATATGTTACA+TGG + chr2_3:8569675-8569694 Msa0276310:intron 20.0%
!! TGTAGAATGTAGAATTTATT+TGG + chr2_3:8569881-8569900 Msa0276310:intron 20.0%
!!! TTTCTTTGAAAAAGAATTTG+GGG + chr2_3:8569919-8569938 Msa0276310:intron 20.0%
!!! TTTAATTTATCCATCTCATT+AGG - chr2_3:8569964-8569983 None:intergenic 20.0%
!! TAATGAGATGGATAAATTAA+AGG + chr2_3:8569963-8569982 Msa0276310:intron 20.0%
!! AATGAGATGGATAAATTAAA+GGG + chr2_3:8569964-8569983 Msa0276310:intron 20.0%
!! AAACAAATAACAAACAAATG+AGG - chr2_3:8570144-8570163 None:intergenic 20.0%
!!! CTTTTTAACTGTGTATAAGA+TGG - chr2_3:8565440-8565459 None:intergenic 25.0%
!! CTTCTTTGTTTATTCATGTT+TGG + chr2_3:8565499-8565518 Msa0276310:intron 25.0%
!!! ATTCTCTTTTTTGCTTTCAT+GGG + chr2_3:8565537-8565556 Msa0276310:intron 25.0%
! TCACTTAATAGTCAAAACTT+AGG + chr2_3:8565652-8565671 Msa0276310:intron 25.0%
! CACTTAATAGTCAAAACTTA+GGG + chr2_3:8565653-8565672 Msa0276310:intron 25.0%
! TACTAAGTAGAACTGTTAAA+AGG - chr2_3:8565894-8565913 None:intergenic 25.0%
!!! TTCTTGATGCTTTTTACAAA+GGG + chr2_3:8565962-8565981 Msa0276310:intron 25.0%
! AAGTTACATAATACCAAACT+TGG - chr2_3:8566102-8566121 None:intergenic 25.0%
! TTCCAAAAAGAGCTATTATA+AGG + chr2_3:8566286-8566305 Msa0276310:intron 25.0%
!! AACCTTATAATAGCTCTTTT+TGG - chr2_3:8566291-8566310 None:intergenic 25.0%
!! TATAAGGTTTTGCTTGTAAT+TGG + chr2_3:8566302-8566321 Msa0276310:intron 25.0%
! TATACTGAATTACATATGCA+AGG - chr2_3:8566586-8566605 None:intergenic 25.0%
! GCATATGTAATTCAGTATAA+AGG + chr2_3:8566587-8566606 Msa0276310:intron 25.0%
!! TTGATGTTGATTGTAATTTG+TGG + chr2_3:8566676-8566695 Msa0276310:intron 25.0%
! TGACATACTTATTATAGCAA+AGG - chr2_3:8566710-8566729 None:intergenic 25.0%
! TGCTGTATAATATCAGATTT+AGG + chr2_3:8566974-8566993 Msa0276310:intron 25.0%
!! ATATGAAACTTCTTTTGTCT+TGG + chr2_3:8567096-8567115 Msa0276310:intron 25.0%
! GGAATTAGATATATACCAAA+AGG + chr2_3:8567117-8567136 Msa0276310:intron 25.0%
! GACAAAAACAAAAGTTTAGA+TGG - chr2_3:8567172-8567191 None:intergenic 25.0%
!! ATCCTTTAGGTCTTTTTAAT+TGG - chr2_3:8567194-8567213 None:intergenic 25.0%
! TATTACATGAAACATCCTTT+AGG - chr2_3:8567207-8567226 None:intergenic 25.0%
!!! AGTTTTTTCATTTTTTTGGG+TGG + chr2_3:8567331-8567350 Msa0276310:intron 25.0%
!!! GTTTTTTCATTTTTTTGGGT+GGG + chr2_3:8567332-8567351 Msa0276310:intron 25.0%
!!! GTTATGTTATTTTGAAGGAT+TGG + chr2_3:8567459-8567478 Msa0276310:intron 25.0%
! TATATGACTTTCTTCACATT+AGG + chr2_3:8567570-8567589 Msa0276310:intron 25.0%
!!! GTTGTGTTATTTTGAAAGAT+TGG + chr2_3:8567628-8567647 Msa0276310:intron 25.0%
! AAATTTACTGGTATGTTCAT+TGG + chr2_3:8567811-8567830 Msa0276310:intron 25.0%
!! ATTAAATTTTCAGACATTGC+AGG - chr2_3:8567895-8567914 None:intergenic 25.0%
!!! ATGTTTTAGCATTTACAAGT+TGG + chr2_3:8567934-8567953 Msa0276310:intron 25.0%
! ATTACTATCTTCATTCTGTT+AGG - chr2_3:8568045-8568064 None:intergenic 25.0%
!! TTTTGATGCTGTATAAAAAC+AGG + chr2_3:8568079-8568098 Msa0276310:intron 25.0%
! TATAAGGACTAAATGCTATA+TGG + chr2_3:8568216-8568235 Msa0276310:intron 25.0%
! AAACGAAATGAAAAGATGAA+AGG - chr2_3:8568606-8568625 None:intergenic 25.0%
! AAATCAACTTTATGTCAGTT+GGG - chr2_3:8569040-8569059 None:intergenic 25.0%
!!! AAAGGTTGGTAACTATAATT+TGG - chr2_3:8569139-8569158 None:intergenic 25.0%
! TTTACAAAAATCATTCCATG+AGG + chr2_3:8569413-8569432 Msa0276310:intron 25.0%
! ATGCCAAATTTGATTGAATT+TGG + chr2_3:8569465-8569484 Msa0276310:intron 25.0%
! AGTCCAAATTCAATCAAATT+TGG - chr2_3:8569471-8569490 None:intergenic 25.0%
! TTGGACTTGAATAATTAGTT+TGG + chr2_3:8569484-8569503 Msa0276310:intron 25.0%
! ATATCATAAGTTATGTACCA+TGG - chr2_3:8569559-8569578 None:intergenic 25.0%
! TGGTACATAACTTATGATAT+TGG + chr2_3:8569559-8569578 Msa0276310:intron 25.0%
! ATAACAATATAGCTAACACA+TGG - chr2_3:8569616-8569635 None:intergenic 25.0%
! TATAATTAGAGTTGAGTTTG+TGG + chr2_3:8569633-8569652 Msa0276310:intron 25.0%
! ATGAGATGGATAAATTAAAG+GGG + chr2_3:8569965-8569984 Msa0276310:intron 25.0%
TTAACTGTGTATAAGATGGA+AGG - chr2_3:8565436-8565455 None:intergenic 30.0%
ACATGAATAAACAAAGAAGC+TGG - chr2_3:8565498-8565517 None:intergenic 30.0%
!!! GATTCTCTTTTTTGCTTTCA+TGG + chr2_3:8565536-8565555 Msa0276310:intron 30.0%
TTGCATAAATCATGTAAGCA+AGG - chr2_3:8565618-8565637 None:intergenic 30.0%
AACAGCTAACATAGAAAGAT+AGG + chr2_3:8565760-8565779 Msa0276310:intron 30.0%
ACAGCTAACATAGAAAGATA+GGG + chr2_3:8565761-8565780 Msa0276310:intron 30.0%
! TTAGTAGCTAGACTTTTTGT+TGG + chr2_3:8565908-8565927 Msa0276310:intron 30.0%
! TTGGAAAGAAAAGCACAATA+GGG + chr2_3:8565927-8565946 Msa0276310:intron 30.0%
!! GTTCTTGATGCTTTTTACAA+AGG + chr2_3:8565961-8565980 Msa0276310:intron 30.0%
!! TTTCTTTTGTTTGTGAATGC+AGG + chr2_3:8565995-8566014 Msa0276310:intron 30.0%
!! TTCTTTTGTTTGTGAATGCA+GGG + chr2_3:8565996-8566015 Msa0276310:intron 30.0%
!!! CTTTGTTTTTTGGATCATAG+CGG - chr2_3:8566076-8566095 None:intergenic 30.0%
GCTATGATCCAAAAAACAAA+GGG + chr2_3:8566075-8566094 Msa0276310:exon 30.0%
CTATGATCCAAAAAACAAAG+GGG + chr2_3:8566076-8566095 Msa0276310:exon 30.0%
TGGAAGTTAGAAAATTGTCA+TGG - chr2_3:8566271-8566290 None:intergenic 30.0%
!!! TCAACTTTGTTTTTAGGCTT+TGG + chr2_3:8566831-8566850 Msa0276310:intron 30.0%
!! TGGTTTATAATTGATGATGG+TGG + chr2_3:8566889-8566908 Msa0276310:intron 30.0%
GATGCATAGCTAAAACATTA+TGG + chr2_3:8566996-8567015 Msa0276310:intron 30.0%
GTCCAATTAAAAAGACCTAA+AGG + chr2_3:8567189-8567208 Msa0276310:intron 30.0%
TCACATTAGGATTTGTAACT+TGG + chr2_3:8567583-8567602 Msa0276310:intron 30.0%
TCATAAATTCCCATACCATA+AGG + chr2_3:8567731-8567750 Msa0276310:intron 30.0%
CATAAATTCCCATACCATAA+GGG + chr2_3:8567732-8567751 Msa0276310:intron 30.0%
AAATCAAACCCTTATGGTAT+GGG - chr2_3:8567743-8567762 None:intergenic 30.0%
AAAATCAAACCCTTATGGTA+TGG - chr2_3:8567744-8567763 None:intergenic 30.0%
! GAACATACCAGTAAATTTTG+AGG - chr2_3:8567809-8567828 None:intergenic 30.0%
AAACAAACGAAAGGATTTCA+AGG - chr2_3:8568176-8568195 None:intergenic 30.0%
ACATTACATACCTTATGTCA+TGG - chr2_3:8568765-8568784 None:intergenic 30.0%
GTTTATGTAATGAAAGAGCA+AGG - chr2_3:8568821-8568840 None:intergenic 30.0%
! TGATTTCTTCATCTTTTGAG+TGG + chr2_3:8568963-8568982 Msa0276310:intron 30.0%
TTCATTCAAACTGAATGTGA+AGG - chr2_3:8568999-8569018 None:intergenic 30.0%
CAAATCAACTTTATGTCAGT+TGG - chr2_3:8569041-8569060 None:intergenic 30.0%
! CAACTGACATAAAGTTGATT+TGG + chr2_3:8569039-8569058 Msa0276310:intron 30.0%
TGCATAATATGATTGATGTC+TGG + chr2_3:8569101-8569120 Msa0276310:intron 30.0%
TGAGAGCTTATTAAGGATAA+AGG + chr2_3:8569347-8569366 Msa0276310:intron 30.0%
TTCAATCAAATTTGGCATGT+AGG - chr2_3:8569463-8569482 None:intergenic 30.0%
AAAATGAAAATAGGGAACCA+TGG + chr2_3:8569539-8569558 Msa0276310:intron 30.0%
ATACACGTTTAGACAGTTTA+AGG + chr2_3:8569722-8569741 Msa0276310:intron 30.0%
AGATAAACAATGTGCTCATT+TGG + chr2_3:8569818-8569837 Msa0276310:CDS 30.0%
!!! GAAGATGCTTTTTAAAGTTC+AGG + chr2_3:8569990-8570009 Msa0276310:CDS 30.0%
! TTTAAAGTTCAGGCAGTTAT+TGG + chr2_3:8570000-8570019 Msa0276310:CDS 30.0%
TTTGTATGATGGTTCCTATA+GGG + chr2_3:8570032-8570051 Msa0276310:CDS 30.0%
GGTGTAAAAATTACCTTAGA+AGG - chr2_3:8570123-8570142 None:intergenic 30.0%
!! GTTAAGGCTATGTTTTTCAA+TGG + chr2_3:8570170-8570189 Msa0276310:intron 30.0%
TGGACCTGAATTTATCATTT+AGG + chr2_3:8570190-8570209 Msa0276310:intron 30.0%
AACGCCTAAATGATAAATTC+AGG - chr2_3:8570197-8570216 None:intergenic 30.0%
ATTGATACTGAGAAGATTGT+TGG + chr2_3:8570242-8570261 Msa0276310:CDS 30.0%
TATCCAAGGTTAAGAAGTTG+TGG - chr2_3:8565389-8565408 None:intergenic 35.0%
CCTCTTGTAATCATTATCCA+AGG - chr2_3:8565403-8565422 None:intergenic 35.0%
CCTTGGATAATGATTACAAG+AGG + chr2_3:8565400-8565419 Msa0276310:five_prime_UTR 35.0%
! GTGTTATATTTGTTAACGGC+AGG + chr2_3:8565571-8565590 Msa0276310:intron 35.0%
AACATAGAAAGATAGGGACA+TGG + chr2_3:8565767-8565786 Msa0276310:intron 35.0%
ATGGTTAATGAAGGTAACCT+AGG + chr2_3:8565786-8565805 Msa0276310:intron 35.0%
! GTTGGAAAGAAAAGCACAAT+AGG + chr2_3:8565926-8565945 Msa0276310:intron 35.0%
TTTGTATGAAGATCCCTCAA+TGG - chr2_3:8566022-8566041 None:intergenic 35.0%
ATTGAGGGATCTTCATACAA+AGG + chr2_3:8566021-8566040 Msa0276310:five_prime_UTR 35.0%
CGCTATGATCCAAAAAACAA+AGG + chr2_3:8566074-8566093 Msa0276310:exon 35.0%
!! GGTATTATGTAACTTGCTGA+AGG + chr2_3:8566107-8566126 Msa0276310:CDS 35.0%
!! TGTTGAATGAAAGAAGCATC+AGG + chr2_3:8566430-8566449 Msa0276310:intron 35.0%
TAGTGATTGTGATTCCTTTG+TGG + chr2_3:8566625-8566644 Msa0276310:intron 35.0%
ATTGTGATTCCTTTGTGGAA+AGG + chr2_3:8566630-8566649 Msa0276310:intron 35.0%
ATTCCTTTGTGGAAAGGAAT+TGG + chr2_3:8566636-8566655 Msa0276310:intron 35.0%
TCAGTTTGATTGTGTTTGAC+AGG + chr2_3:8566730-8566749 Msa0276310:intron 35.0%
!!! ACTTTGTTTTTAGGCTTTGG+TGG + chr2_3:8566834-8566853 Msa0276310:intron 35.0%
GAACGCAAAGATTTCTCAAA+AGG + chr2_3:8566911-8566930 Msa0276310:intron 35.0%
TACTTTCTCTCTCCTTCATT+CGG - chr2_3:8566939-8566958 None:intergenic 35.0%
! ATGGACTAACTACAAAGCAA+CGG - chr2_3:8567153-8567172 None:intergenic 35.0%
! TAGCCTTTCCTCAAAAGTAT+AGG + chr2_3:8567502-8567521 Msa0276310:intron 35.0%
! CTTTCCTCAAAAGTATAGGT+CGG + chr2_3:8567506-8567525 Msa0276310:intron 35.0%
AAGTCTTCCATACCTTCATT+TGG + chr2_3:8567691-8567710 Msa0276310:intron 35.0%
AAACAGACCAAATGAAGGTA+TGG - chr2_3:8567701-8567720 None:intergenic 35.0%
CCAAAAAACAGACCAAATGA+AGG - chr2_3:8567706-8567725 None:intergenic 35.0%
!!! CCTTCATTTGGTCTGTTTTT+TGG + chr2_3:8567703-8567722 Msa0276310:intron 35.0%
!! ACCATAAGGGTTTGATTTTG+AGG + chr2_3:8567745-8567764 Msa0276310:intron 35.0%
ACCTCAAAATCAAACCCTTA+TGG - chr2_3:8567749-8567768 None:intergenic 35.0%
!!! AGGGTTTGATTTTGAGGTTT+TGG + chr2_3:8567751-8567770 Msa0276310:intron 35.0%
! GTGCATTCGTTGATTGATTT+GGG + chr2_3:8567959-8567978 Msa0276310:intron 35.0%
!! TGCATTCGTTGATTGATTTG+GGG + chr2_3:8567960-8567979 Msa0276310:intron 35.0%
GCTATTGCAAAACAAACGAA+AGG - chr2_3:8568185-8568204 None:intergenic 35.0%
GTACACAAAAGCTAGTTAAC+TGG - chr2_3:8568387-8568406 None:intergenic 35.0%
! CCTTGATAATTTCCACAAGT+TGG - chr2_3:8568505-8568524 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG + chr2_3:8568502-8568521 Msa0276310:CDS 35.0%
ATATGTTCAAGCTAGTAGCA+AGG - chr2_3:8568570-8568589 None:intergenic 35.0%
AAGTGAACCACATGAAACTT+CGG - chr2_3:8568654-8568673 None:intergenic 35.0%
ACTTGATTTCTTCCCTTGTT+GGG - chr2_3:8568692-8568711 None:intergenic 35.0%
!! CATGGATGAGATTTGATTTG+AGG - chr2_3:8568747-8568766 None:intergenic 35.0%
CAAATCTCATCCATGACATA+AGG + chr2_3:8568752-8568771 Msa0276310:CDS 35.0%
GGGATAATAAATGCTGAAGT+AGG + chr2_3:8569286-8569305 Msa0276310:intron 35.0%
AAGTAGGCAATCTTCAAAGT+AGG + chr2_3:8569302-8569321 Msa0276310:intron 35.0%
ATAAGCTCTCAAGTCTTCAT+CGG - chr2_3:8569338-8569357 None:intergenic 35.0%
GAAGACTTGAGAGCTTATTA+AGG + chr2_3:8569340-8569359 Msa0276310:intron 35.0%
AAAATCATTCCATGAGGTCT+AGG + chr2_3:8569419-8569438 Msa0276310:intron 35.0%
! TTTTTGTTACCTAGACCTCA+TGG - chr2_3:8569431-8569450 None:intergenic 35.0%
AGTTTGGTCAAGTTACGAAT+TGG + chr2_3:8569500-8569519 Msa0276310:intron 35.0%
!!! TGCTGTAGCTAAGGTTTTTT+TGG + chr2_3:8569842-8569861 Msa0276310:intron 35.0%
TGGATTTCATCCTAATGAGA+TGG + chr2_3:8569951-8569970 Msa0276310:intron 35.0%
CTTTGTATGATGGTTCCTAT+AGG + chr2_3:8570031-8570050 Msa0276310:CDS 35.0%
TGAGATTTACTCTCCTTCTA+AGG + chr2_3:8570107-8570126 Msa0276310:CDS 35.0%
!! GAATGTTTCACTTGATGATG+AGG + chr2_3:8570217-8570236 Msa0276310:CDS 35.0%
ATGCCACAACTTCTTAACCT+TGG + chr2_3:8565383-8565402 Msa0276310:five_prime_UTR 40.0%
! GCTTTCATGGGAAATGCTTT+TGG + chr2_3:8565549-8565568 Msa0276310:intron 40.0%
GATAGGGACATGGTTAATGA+AGG + chr2_3:8565777-8565796 Msa0276310:intron 40.0%
GGATCTTCATACAAAGGACT+GGG + chr2_3:8566027-8566046 Msa0276310:five_prime_UTR 40.0%
!!! TGTTTTTTGGATCATAGCGG+TGG - chr2_3:8566073-8566092 None:intergenic 40.0%
!!! AACTTGGCCCCTTTGTTTTT+TGG - chr2_3:8566086-8566105 None:intergenic 40.0%
AAAAACAAAGGGGCCAAGTT+TGG + chr2_3:8566086-8566105 Msa0276310:CDS 40.0%
AAGTTGGAAGACAGTAGTGA+AGG - chr2_3:8566508-8566527 None:intergenic 40.0%
CTACCAATTCCTTTCCACAA+AGG - chr2_3:8566642-8566661 None:intergenic 40.0%
TTGATTGTGTTTGACAGGTG+TGG + chr2_3:8566735-8566754 Msa0276310:intron 40.0%
! AACGGTTCTTCTCTTCCTTT+TGG - chr2_3:8567135-8567154 None:intergenic 40.0%
!! CGACCTATACTTTTGAGGAA+AGG - chr2_3:8567508-8567527 None:intergenic 40.0%
! TCTGCGTTTTTAAACCTCAC+AGG + chr2_3:8567774-8567793 Msa0276310:CDS 40.0%
! CTGCGTTTTTAAACCTCACA+GGG + chr2_3:8567775-8567794 Msa0276310:CDS 40.0%
TGAGGTTTAATATCCCTGTG+AGG - chr2_3:8567791-8567810 None:intergenic 40.0%
! CGTGCATTCGTTGATTGATT+TGG + chr2_3:8567958-8567977 Msa0276310:intron 40.0%
CAAAGTCGCATATCTTCAGT+TGG - chr2_3:8568121-8568140 None:intergenic 40.0%
CAACTGAAGATATGCGACTT+TGG + chr2_3:8568119-8568138 Msa0276310:CDS 40.0%
!! CTTTGGAAGTGCTAATGTCT+TGG + chr2_3:8568136-8568155 Msa0276310:CDS 40.0%
AGAGCTCCTGAGCTTATATT+CGG + chr2_3:8568292-8568311 Msa0276310:intron 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG + chr2_3:8568361-8568380 Msa0276310:intron 40.0%
!!! AACTAGCTTTTGTGTACGCT+TGG + chr2_3:8568390-8568409 Msa0276310:intron 40.0%
TCTTATCAGTCACTGTTTCC+TGG + chr2_3:8568464-8568483 Msa0276310:intron 40.0%
GTTCATTCCGAAGTTTCATG+TGG + chr2_3:8568644-8568663 Msa0276310:intron 40.0%
CTTGATTTCTTCCCTTGTTG+GGG - chr2_3:8568691-8568710 None:intergenic 40.0%
CACTTGATTTCTTCCCTTGT+TGG - chr2_3:8568693-8568712 None:intergenic 40.0%
TAAGCTCTCAAGTCTTCATC+GGG - chr2_3:8569337-8569356 None:intergenic 40.0%
!!! TGTTGCTTTTGACACTGACA+TGG + chr2_3:8569785-8569804 Msa0276310:CDS 40.0%
!!! GTTGCTTTTGACACTGACAT+GGG + chr2_3:8569786-8569805 Msa0276310:CDS 40.0%
TCATTTGGTTGCTGTAGCTA+AGG + chr2_3:8569833-8569852 Msa0276310:CDS 40.0%
! AGAATTTGGGGCGATAATGT+TGG + chr2_3:8569931-8569950 Msa0276310:intron 40.0%
GAACCATCATACAAAGCATG+GGG - chr2_3:8570027-8570046 None:intergenic 40.0%
GGAACCATCATACAAAGCAT+GGG - chr2_3:8570028-8570047 None:intergenic 40.0%
AGGAACCATCATACAAAGCA+TGG - chr2_3:8570029-8570048 None:intergenic 40.0%
! TACTGAGAAGATTGTTGGCT+CGG + chr2_3:8570247-8570266 Msa0276310:CDS 40.0%
GCAAGAAAGCTAGTAAGCCT+AGG - chr2_3:8565806-8565825 None:intergenic 45.0%
GGGATCTTCATACAAAGGAC+TGG + chr2_3:8566026-8566045 Msa0276310:five_prime_UTR 45.0%
TTGCTGAAGGCTTCACTCAT+CGG + chr2_3:8566120-8566139 Msa0276310:CDS 45.0%
ATTGTGTTTGACAGGTGTGG+TGG + chr2_3:8566738-8566757 Msa0276310:intron 45.0%
TCTCAAAAGGAGCCGAATGA+AGG + chr2_3:8566924-8566943 Msa0276310:intron 45.0%
! CATGCCGACCTATACTTTTG+AGG - chr2_3:8567513-8567532 None:intergenic 45.0%
GTCGCATATCTTCAGTTGGT+GGG - chr2_3:8568117-8568136 None:intergenic 45.0%
AGTCGCATATCTTCAGTTGG+TGG - chr2_3:8568118-8568137 None:intergenic 45.0%
GTTGCACCGAATATAAGCTC+AGG - chr2_3:8568301-8568320 None:intergenic 45.0%
ACACCACAACCATTGACATC+TGG + chr2_3:8568326-8568345 Msa0276310:intron 45.0%
TGACCAGATGTCAATGGTTG+TGG - chr2_3:8568332-8568351 None:intergenic 45.0%
ACCATTGACATCTGGTCAGT+TGG + chr2_3:8568334-8568353 Msa0276310:intron 45.0%
ACCAACTGACCAGATGTCAA+TGG - chr2_3:8568338-8568357 None:intergenic 45.0%
GTTTCATGTGGTTCACTTGC+AGG + chr2_3:8568656-8568675 Msa0276310:intron 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG + chr2_3:8568663-8568682 Msa0276310:intron 45.0%
!!! AGGTTTTAGGTACCCCAACA+AGG + chr2_3:8568676-8568695 Msa0276310:intron 45.0%
!!! GGTTTTAGGTACCCCAACAA+GGG + chr2_3:8568677-8568696 Msa0276310:intron 45.0%
ATGGTTCCTATAGGGTGAGA+AGG + chr2_3:8570040-8570059 Msa0276310:CDS 45.0%
TGGTTCCTATAGGGTGAGAA+GGG + chr2_3:8570041-8570060 Msa0276310:CDS 45.0%
ACAAACCCTTCTCACCCTAT+AGG - chr2_3:8570049-8570068 None:intergenic 45.0%
! GGTTGATGCTTCACATACTG+AGG + chr2_3:8570268-8570287 Msa0276310:CDS 45.0%
!! AAAAAAATAAAAATGAAAAT+AGG + chr2_3:8569530-8569549 Msa0276310:intron 5.0%
!! AAAAAATAAAAATGAAAATA+GGG + chr2_3:8569531-8569550 Msa0276310:intron 5.0%
TTGTGAATGCAGGGCCATTG+AGG + chr2_3:8566005-8566024 Msa0276310:intron 50.0%
TGTGAATGCAGGGCCATTGA+GGG + chr2_3:8566006-8566025 Msa0276310:intron 50.0%
TGGTCAGTTGGTTGCGTACT+TGG + chr2_3:8568346-8568365 Msa0276310:intron 50.0%
TCACTGTTTCCTGGTGAGAG+TGG + chr2_3:8568473-8568492 Msa0276310:CDS 50.0%
GAGTGGAGTAGACCAACTTG+TGG + chr2_3:8568490-8568509 Msa0276310:CDS 50.0%
GGACCCCATGCTTTGTATGA+TGG + chr2_3:8570021-8570040 Msa0276310:CDS 50.0%
TGGTCTACTCCACTCTCACC+AGG - chr2_3:8568485-8568504 None:intergenic 55.0%
CTCAAGTCTTCATCGGGTGG+AGG - chr2_3:8569331-8569350 None:intergenic 55.0%
GCTCTCAAGTCTTCATCGGG+TGG - chr2_3:8569334-8569353 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8565264 8570304 8565264 ID=Msa0276310;Name=Msa0276310
chr2_3 mRNA 8565264 8570304 8565264 ID=Msa0276310-mRNA-1;Parent=Msa0276310;Name=Msa0276310-mRNA-1;_AED=0.44;_eAED=0.65;_QI=219|0.25|0.44|0.88|0.5|0.77|9|0|212
chr2_3 exon 8565264 8565421 8565264 ID=Msa0276310-mRNA-1:exon:3824;Parent=Msa0276310-mRNA-1
chr2_3 exon 8566017 8566141 8566017 ID=Msa0276310-mRNA-1:exon:3825;Parent=Msa0276310-mRNA-1
chr2_3 exon 8567753 8567820 8567753 ID=Msa0276310-mRNA-1:exon:3826;Parent=Msa0276310-mRNA-1
chr2_3 exon 8568101 8568157 8568101 ID=Msa0276310-mRNA-1:exon:3827;Parent=Msa0276310-mRNA-1
chr2_3 exon 8568473 8568523 8568473 ID=Msa0276310-mRNA-1:exon:3828;Parent=Msa0276310-mRNA-1
chr2_3 exon 8568733 8568773 8568733 ID=Msa0276310-mRNA-1:exon:3829;Parent=Msa0276310-mRNA-1
chr2_3 exon 8569734 8569854 8569734 ID=Msa0276310-mRNA-1:exon:3830;Parent=Msa0276310-mRNA-1
chr2_3 exon 8569985 8570128 8569985 ID=Msa0276310-mRNA-1:exon:3831;Parent=Msa0276310-mRNA-1
chr2_3 exon 8570212 8570304 8570212 ID=Msa0276310-mRNA-1:exon:3832;Parent=Msa0276310-mRNA-1
chr2_3 five_prime_UTR 8565264 8565421 8565264 ID=Msa0276310-mRNA-1:five_prime_utr;Parent=Msa0276310-mRNA-1
chr2_3 five_prime_UTR 8566017 8566077 8566017 ID=Msa0276310-mRNA-1:five_prime_utr;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8566078 8566141 8566078 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8567753 8567820 8567753 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8568101 8568157 8568101 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8568473 8568523 8568473 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8568733 8568773 8568733 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8569734 8569854 8569734 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8569985 8570128 8569985 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
chr2_3 CDS 8570212 8570304 8570212 ID=Msa0276310-mRNA-1:cds;Parent=Msa0276310-mRNA-1
Gene Sequence

>Msa0276310

ATGATCCAAAAAACAAAGGGGCCAAGTTTGGTATTATGTAACTTGCTGAAGGCTTCACTCATCGGGTTTGATTTTGAGGTTTTGGTCTGCGTTTTTAAACCTCACAGGGATATTAAACCTCAAAATTTACTGGTCAATCTTTACACCCACCAACTGAAGATATGCGACTTTGGAAGTGCTAATGTCTTGTCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGAGTTTAAATTTCCTCAAATCAAATCTCATCCATGACATAAGACAGTTTAAGGTTAAACTCCAAGCATCTGATGAAACTGATGATGCAGTGTTTGTTGCTTTTGACACTGACATGGGTTTTCTTCTAGATAAACAATGTGCTCATTTGGTTGCTGTAGCTAAGGGGAAGAAGATGCTTTTTAAAGTTCAGGCAGTTATTGGACCCCATGCTTTGTATGATGGTTCCTATAGGGTGAGAAGGGTTTGTATTGATGAAGCTATTATTGAATTGTTTCTCACTGATGATGAGATTTACTCTCCTTCTAAGGCGTTGAATGTTTCACTTGATGATGAGGTTATTGATACTGAGAAGATTGTTGGCTCGGTTGATGCTTCACATACTGAGGATTTTGTCTCTTAA

Protein sequence

>Msa0276310

MIQKTKGPSLVLCNLLKASLIGFDFEVLVCVFKPHRDIKPQNLLVNLYTHQLKICDFGSANVLSLFPGESGVDQLVEIIKSLNFLKSNLIHDIRQFKVKLQASDETDDAVFVAFDTDMGFLLDKQCAHLVAVAKGKKMLFKVQAVIGPHALYDGSYRVRRVCIDEAIIELFLTDDEIYSPSKALNVSLDDEVIDTEKIVGSVDASHTEDFVS*