Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156400 | XP_003590040.1 | 99.379 | 322 | 2 | 0 | 1 | 322 | 1 | 322 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156400 | sp|P48489|PP1_ORYSJ | 83.278 | 299 | 49 | 1 | 1 | 298 | 15 | 313 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156400 | G7I5D1 | 99.379 | 322 | 2 | 0 | 1 | 322 | 1 | 322 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015940 | Msa0156400 | 0.866756 | 2.259760e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156400 | MtrunA17_Chr1g0167751 | 99.379 | 322 | 2 | 0 | 1 | 322 | 1 | 322 | 0.0 | 665 |
| Msa0156400 | MtrunA17_Chr1g0186811 | 82.569 | 327 | 48 | 2 | 1 | 319 | 1 | 326 | 0.0 | 569 |
| Msa0156400 | MtrunA17_Chr1g0190121 | 81.651 | 327 | 51 | 2 | 1 | 319 | 1 | 326 | 0.0 | 566 |
| Msa0156400 | MtrunA17_Chr7g0274931 | 82.263 | 327 | 49 | 2 | 1 | 319 | 1 | 326 | 0.0 | 561 |
| Msa0156400 | MtrunA17_Chr5g0436061 | 83.612 | 299 | 48 | 1 | 1 | 298 | 17 | 315 | 0.0 | 531 |
| Msa0156400 | MtrunA17_Chr8g0387541 | 75.161 | 310 | 75 | 2 | 1 | 309 | 1 | 309 | 3.90e-180 | 500 |
| Msa0156400 | MtrunA17_Chr8g0334361 | 75.517 | 290 | 71 | 0 | 6 | 295 | 4 | 293 | 4.18e-173 | 481 |
| Msa0156400 | MtrunA17_Chr7g0272371 | 71.987 | 307 | 81 | 2 | 1 | 307 | 5 | 306 | 3.46e-168 | 470 |
| Msa0156400 | MtrunA17_Chr5g0445011 | 48.134 | 268 | 138 | 1 | 26 | 292 | 17 | 284 | 7.40e-94 | 281 |
| Msa0156400 | MtrunA17_Chr8g0364041 | 45.455 | 286 | 154 | 2 | 26 | 310 | 20 | 304 | 4.32e-92 | 276 |
| Msa0156400 | MtrunA17_Chr7g0268381 | 47.232 | 271 | 141 | 2 | 26 | 295 | 27 | 296 | 1.07e-91 | 275 |
| Msa0156400 | MtrunA17_Chr5g0415261 | 45.804 | 286 | 153 | 2 | 26 | 310 | 20 | 304 | 2.96e-91 | 274 |
| Msa0156400 | MtrunA17_Chr8g0378521 | 46.125 | 271 | 144 | 2 | 26 | 295 | 22 | 291 | 6.43e-89 | 268 |
| Msa0156400 | MtrunA17_Chr1g0165341 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 3.88e-87 | 263 |
| Msa0156400 | MtrunA17_Chr2g0322121 | 46.405 | 306 | 143 | 9 | 9 | 295 | 644 | 947 | 3.84e-80 | 262 |
| Msa0156400 | MtrunA17_Chr4g0025471 | 46.230 | 305 | 145 | 8 | 9 | 295 | 649 | 952 | 1.44e-77 | 255 |
| Msa0156400 | MtrunA17_Chr3g0097231 | 42.292 | 253 | 139 | 4 | 33 | 279 | 195 | 446 | 2.35e-67 | 218 |
| Msa0156400 | MtrunA17_Chr2g0330311 | 40.000 | 265 | 150 | 6 | 22 | 279 | 211 | 473 | 4.79e-61 | 202 |
| Msa0156400 | MtrunA17_Chr2g0330331 | 41.532 | 248 | 137 | 5 | 39 | 279 | 66 | 312 | 5.36e-57 | 187 |
| Msa0156400 | MtrunA17_Chr1g0196211 | 44.898 | 196 | 100 | 4 | 108 | 295 | 2 | 197 | 3.63e-50 | 167 |
| Msa0156400 | MtrunA17_Chr8g0369981 | 31.897 | 348 | 158 | 12 | 33 | 313 | 100 | 435 | 2.82e-40 | 146 |
| Msa0156400 | MtrunA17_Chr1g0196221 | 52.381 | 84 | 34 | 1 | 30 | 107 | 552 | 635 | 2.77e-22 | 97.4 |
| Msa0156400 | MtrunA17_Chr2g0330011 | 37.815 | 119 | 64 | 4 | 31 | 140 | 232 | 349 | 2.74e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156400 | AT2G39840.1 | 81.940 | 299 | 53 | 1 | 1 | 298 | 14 | 312 | 0.0 | 531 |
| Msa0156400 | AT2G29400.1 | 81.188 | 303 | 53 | 3 | 1 | 300 | 15 | 316 | 0.0 | 521 |
| Msa0156400 | AT5G59160.3 | 80.263 | 304 | 57 | 3 | 1 | 302 | 9 | 311 | 0.0 | 519 |
| Msa0156400 | AT5G59160.2 | 80.263 | 304 | 57 | 3 | 1 | 302 | 9 | 311 | 0.0 | 519 |
| Msa0156400 | AT5G59160.1 | 80.263 | 304 | 57 | 3 | 1 | 302 | 9 | 311 | 0.0 | 519 |
| Msa0156400 | AT5G43380.1 | 75.701 | 321 | 77 | 1 | 1 | 321 | 1 | 320 | 0.0 | 512 |
| Msa0156400 | AT5G43380.2 | 75.701 | 321 | 77 | 1 | 1 | 321 | 1 | 320 | 0.0 | 511 |
| Msa0156400 | AT5G43380.3 | 75.938 | 320 | 76 | 1 | 1 | 320 | 1 | 319 | 0.0 | 510 |
| Msa0156400 | AT3G46820.1 | 79.000 | 300 | 61 | 1 | 1 | 298 | 9 | 308 | 0.0 | 509 |
| Msa0156400 | AT1G64040.1 | 77.705 | 305 | 66 | 2 | 1 | 304 | 1 | 304 | 0.0 | 506 |
| Msa0156400 | AT4G11240.1 | 72.816 | 309 | 82 | 2 | 1 | 308 | 1 | 308 | 6.87e-175 | 487 |
| Msa0156400 | AT5G27840.1 | 71.613 | 310 | 79 | 2 | 1 | 303 | 9 | 316 | 8.13e-169 | 472 |
| Msa0156400 | AT3G05580.1 | 72.903 | 310 | 75 | 2 | 1 | 303 | 9 | 316 | 1.07e-168 | 471 |
| Msa0156400 | AT5G27840.4 | 71.753 | 308 | 81 | 2 | 1 | 304 | 9 | 314 | 1.72e-168 | 471 |
| Msa0156400 | AT5G27840.2 | 73.898 | 295 | 75 | 1 | 1 | 295 | 9 | 301 | 2.45e-168 | 471 |
| Msa0156400 | AT5G27840.3 | 73.898 | 295 | 75 | 1 | 1 | 295 | 9 | 301 | 2.45e-168 | 471 |
| Msa0156400 | AT3G05580.2 | 73.984 | 246 | 62 | 1 | 1 | 246 | 9 | 252 | 1.96e-135 | 385 |
| Msa0156400 | AT5G55260.1 | 48.507 | 268 | 137 | 1 | 26 | 292 | 17 | 284 | 3.56e-96 | 287 |
| Msa0156400 | AT4G26720.1 | 46.269 | 268 | 143 | 1 | 26 | 292 | 17 | 284 | 6.83e-94 | 281 |
| Msa0156400 | AT2G42500.1 | 47.080 | 274 | 143 | 2 | 26 | 298 | 27 | 299 | 5.50e-93 | 279 |
| Msa0156400 | AT1G10430.2 | 45.105 | 286 | 155 | 2 | 26 | 310 | 20 | 304 | 1.81e-91 | 275 |
| Msa0156400 | AT1G10430.1 | 45.105 | 286 | 155 | 2 | 26 | 310 | 20 | 304 | 1.81e-91 | 275 |
| Msa0156400 | AT3G58500.1 | 46.350 | 274 | 145 | 2 | 26 | 298 | 27 | 299 | 2.70e-91 | 275 |
| Msa0156400 | AT1G69960.1 | 45.105 | 286 | 155 | 2 | 26 | 310 | 21 | 305 | 1.79e-90 | 273 |
| Msa0156400 | AT1G59830.1 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 5.04e-90 | 271 |
| Msa0156400 | AT5G55260.2 | 42.071 | 309 | 137 | 2 | 26 | 292 | 17 | 325 | 1.23e-87 | 266 |
| Msa0156400 | AT3G19980.1 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 1.50e-86 | 262 |
| Msa0156400 | AT1G50370.1 | 44.106 | 263 | 144 | 3 | 25 | 285 | 15 | 276 | 2.59e-86 | 262 |
| Msa0156400 | AT4G03080.1 | 47.143 | 280 | 134 | 5 | 30 | 295 | 554 | 833 | 4.67e-80 | 261 |
| Msa0156400 | AT2G27210.2 | 45.902 | 305 | 146 | 8 | 9 | 295 | 650 | 953 | 6.08e-79 | 259 |
| Msa0156400 | AT2G27210.1 | 45.902 | 305 | 146 | 8 | 9 | 295 | 655 | 958 | 6.40e-79 | 259 |
| Msa0156400 | AT1G08420.2 | 46.230 | 305 | 145 | 8 | 9 | 295 | 661 | 964 | 1.15e-78 | 259 |
| Msa0156400 | AT1G08420.1 | 46.230 | 305 | 145 | 8 | 9 | 295 | 666 | 969 | 1.21e-78 | 259 |
| Msa0156400 | AT1G59830.2 | 48.908 | 229 | 115 | 2 | 26 | 253 | 20 | 247 | 1.98e-78 | 240 |
| Msa0156400 | AT2G42500.2 | 48.416 | 221 | 112 | 2 | 79 | 298 | 33 | 252 | 3.41e-74 | 229 |
| Msa0156400 | AT1G03445.2 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 3.39e-73 | 241 |
| Msa0156400 | AT1G03445.1 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 5.35e-73 | 240 |
| Msa0156400 | AT2G42810.1 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 1.09e-65 | 214 |
| Msa0156400 | AT2G42810.5 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 1.09e-65 | 214 |
| Msa0156400 | AT2G42810.4 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 1.09e-65 | 214 |
| Msa0156400 | AT2G42810.2 | 42.688 | 253 | 138 | 4 | 33 | 279 | 251 | 502 | 2.40e-65 | 215 |
| Msa0156400 | AT2G42810.3 | 42.688 | 253 | 138 | 4 | 33 | 279 | 250 | 501 | 2.53e-65 | 215 |
| Msa0156400 | AT2G42500.4 | 46.939 | 147 | 74 | 3 | 26 | 168 | 27 | 173 | 8.83e-43 | 146 |
| Msa0156400 | AT2G42500.5 | 46.104 | 154 | 77 | 4 | 26 | 175 | 27 | 178 | 2.94e-42 | 144 |
| Msa0156400 | AT2G42500.3 | 48.921 | 139 | 67 | 3 | 26 | 160 | 27 | 165 | 4.79e-42 | 144 |
| Msa0156400 | AT5G63870.1 | 30.205 | 341 | 170 | 13 | 33 | 306 | 52 | 391 | 9.11e-35 | 131 |
| Msa0156400 | AT5G63870.2 | 30.205 | 341 | 170 | 13 | 33 | 306 | 52 | 391 | 9.11e-35 | 131 |
| Msa0156400 | AT1G48120.1 | 31.208 | 298 | 145 | 6 | 31 | 268 | 628 | 925 | 3.53e-29 | 118 |
| Msa0156400 | AT5G63870.3 | 31.474 | 251 | 130 | 9 | 33 | 242 | 52 | 301 | 1.01e-27 | 110 |
| Msa0156400 | AT5G10900.2 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 4.99e-21 | 94.0 |
| Msa0156400 | AT5G10900.3 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 5.59e-21 | 94.0 |
| Msa0156400 | AT5G10900.1 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 5.88e-21 | 94.0 |
Find 82 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTACTTTCTTGATTA+TGG | 0.141574 | 1_4:+22481514 | Msa0156400:exon |
| CGTTCCAACTACTTGTTCTT+AGG | 0.194579 | 1_4:+22483361 | Msa0156400:CDS |
| GAATCCGTAGACGCGATTTA+TGG | 0.207636 | 1_4:-22483497 | None:intergenic |
| TAGTTACCACATATCTTAAT+TGG | 0.282650 | 1_4:-22481692 | None:intergenic |
| TGTTTCAAACTATGCAATTC+AGG | 0.295203 | 1_4:-22483643 | None:intergenic |
| TCAAACTCTCCACAGTAATT+AGG | 0.300714 | 1_4:-22484587 | None:intergenic |
| GCTTCCTCTATTCATAAATC+TGG | 0.307257 | 1_4:+22486312 | Msa0156400:three_prime_UTR |
| CATGCTCAAATAGGCTTAAT+AGG | 0.316064 | 1_4:-22483324 | None:intergenic |
| CTTGAAGCAGCCTAATTTGT+TGG | 0.324778 | 1_4:+22481658 | Msa0156400:CDS |
| CGTGGTGTTTCGTTTACTTT+TGG | 0.338029 | 1_4:+22483772 | Msa0156400:CDS |
| TACTGTGGCACTGACAATTT+CGG | 0.338798 | 1_4:+22486341 | Msa0156400:three_prime_UTR |
| TCACATAAAAGACCAGTTTC+AGG | 0.342012 | 1_4:-22483697 | None:intergenic |
| GATCATAAAATGCCTAAGTT+TGG | 0.343821 | 1_4:+22484677 | Msa0156400:CDS |
| ATTCATGGTTTCCTCGTAGA+AGG | 0.349139 | 1_4:-22483468 | None:intergenic |
| GGAATCCACCATGCTCAAAT+AGG | 0.355827 | 1_4:-22483333 | None:intergenic |
| CTTGATTTGTAGAGCTCATC+AGG | 0.356629 | 1_4:+22483837 | Msa0156400:CDS |
| CAATGGAACAACTTAATTGC+TGG | 0.370627 | 1_4:+22486196 | Msa0156400:three_prime_UTR |
| TTCTTGATGGTATCATTAAT+AGG | 0.371158 | 1_4:+22481546 | Msa0156400:CDS |
| GCCTCAAGTTCCAACAAATT+AGG | 0.376724 | 1_4:-22481668 | None:intergenic |
| CCAAGTGAAGTTCCTGAAAC+TGG | 0.383450 | 1_4:+22483685 | Msa0156400:CDS |
| TTTCTATAGGTTGTTGAAGA+TGG | 0.384025 | 1_4:+22484518 | Msa0156400:intron |
| AGATTGTTTCAACTGTTTGC+CGG | 0.384374 | 1_4:+22483570 | Msa0156400:CDS |
| AATAGGTTGCTTGATGTTAG+AGG | 0.400822 | 1_4:+22481563 | Msa0156400:CDS |
| GGACCGTGGAAAACAAAGTT+TGG | 0.405620 | 1_4:+22483393 | Msa0156400:CDS |
| GATTTATGGAAGCACATTCA+TGG | 0.406324 | 1_4:-22483483 | None:intergenic |
| TCAGGAACTTCACTTGGCCT+TGG | 0.409043 | 1_4:-22483679 | None:intergenic |
| AAAGTAACAACAAAATTTAG+AGG | 0.412264 | 1_4:-22481503 | None:intergenic |
| TAGAGGAAGACCTGGGAAAC+AGG | 0.412490 | 1_4:+22481580 | Msa0156400:CDS |
| TAGTAAAGATGTTCATGGTT+GGG | 0.413408 | 1_4:+22483738 | Msa0156400:CDS |
| CCAGTTTCAGGAACTTCACT+TGG | 0.414690 | 1_4:-22483685 | None:intergenic |
| GCAAGAGGAGATTCAATGTA+AGG | 0.431969 | 1_4:+22483530 | Msa0156400:CDS |
| ATGGAACGAAGGGTTCTTGA+TGG | 0.433784 | 1_4:+22481533 | Msa0156400:CDS |
| TAGGAGCACAACTTCATTCA+AGG | 0.442692 | 1_4:+22484703 | Msa0156400:CDS |
| GGAGATTCAATGTAAGGGTA+TGG | 0.442978 | 1_4:+22483536 | Msa0156400:CDS |
| GACTATAAGATGACTAAAGT+TGG | 0.446995 | 1_4:+22486098 | Msa0156400:three_prime_UTR |
| GATCCTAGTAAAGATGTTCA+TGG | 0.464856 | 1_4:+22483733 | Msa0156400:CDS |
| TTTCAACTGTTTGCCGGTCG+CGG | 0.466909 | 1_4:+22483576 | Msa0156400:CDS |
| CAACCATGAACATCTTTACT+AGG | 0.473905 | 1_4:-22483736 | None:intergenic |
| TGTGGAGAGTTTGACAATGC+TGG | 0.482312 | 1_4:+22484596 | Msa0156400:CDS |
| GCCTAATTTGTTGGAACTTG+AGG | 0.482437 | 1_4:+22481667 | Msa0156400:CDS |
| ACAACCAGATTTATGAATAG+AGG | 0.484282 | 1_4:-22486316 | None:intergenic |
| AATTGCTGGCTCAACACAAA+TGG | 0.495222 | 1_4:+22486210 | Msa0156400:three_prime_UTR |
| GAAAGCTGAACCTGTTTCCC+AGG | 0.504004 | 1_4:-22481590 | None:intergenic |
| AGTAAAGATGTTCATGGTTG+GGG | 0.513074 | 1_4:+22483739 | Msa0156400:CDS |
| GCTTCCATAAATCGCGTCTA+CGG | 0.514773 | 1_4:+22483493 | Msa0156400:CDS |
| GTCACCTAAGAACAAGTAGT+TGG | 0.527172 | 1_4:-22483365 | None:intergenic |
| CTAGTAAAGATGTTCATGGT+TGG | 0.530691 | 1_4:+22483737 | Msa0156400:CDS |
| AGGATGACATCAATTGTCAA+TGG | 0.537868 | 1_4:+22486179 | Msa0156400:three_prime_UTR |
| TTTCTTGATTATGGAACGAA+GGG | 0.547346 | 1_4:+22481523 | Msa0156400:exon |
| TCATCGATGATAGCCGCGAC+CGG | 0.549911 | 1_4:-22483589 | None:intergenic |
| TGCTGGCTCAACACAAATGG+AGG | 0.552577 | 1_4:+22486213 | Msa0156400:three_prime_UTR |
| ACTACAATGTGAAGGATGAC+AGG | 0.558527 | 1_4:+22486159 | Msa0156400:three_prime_UTR |
| CTTTCTTGATTATGGAACGA+AGG | 0.562095 | 1_4:+22481522 | Msa0156400:exon |
| AACAGATAAGTAATTTGCCA+AGG | 0.564405 | 1_4:+22483662 | Msa0156400:CDS |
| CTTGATGTTAGAGGAAGACC+TGG | 0.565129 | 1_4:+22481572 | Msa0156400:CDS |
| GTGCTCCTAAAACCAAACTT+AGG | 0.573212 | 1_4:-22484689 | None:intergenic |
| TTATGAATAGAGGAAGCACT+AGG | 0.581588 | 1_4:-22486306 | None:intergenic |
| CTTTGTTCACTACAATGTGA+AGG | 0.587221 | 1_4:+22486151 | Msa0156400:three_prime_UTR |
| GTGGAGAGTTTGACAATGCT+GGG | 0.589015 | 1_4:+22484597 | Msa0156400:CDS |
| CAAGAGGAGATTCAATGTAA+GGG | 0.594417 | 1_4:+22483531 | Msa0156400:CDS |
| CTTGTTCTTAGGTGACTATG+TGG | 0.595503 | 1_4:+22483372 | Msa0156400:CDS |
| AAACAGGTTCAGCTTTCAGA+GGG | 0.596976 | 1_4:+22481596 | Msa0156400:CDS |
| AGATTGCAGAGTTTCTTCAA+AGG | 0.597800 | 1_4:+22483803 | Msa0156400:CDS |
| CTATTAAGCCTATTTGAGCA+TGG | 0.607320 | 1_4:+22483325 | Msa0156400:CDS |
| TAAATCTGGTTGTATTACTG+TGG | 0.611440 | 1_4:+22486326 | Msa0156400:three_prime_UTR |
| GAGGCACCAATTAAGATATG+TGG | 0.612070 | 1_4:+22481686 | Msa0156400:CDS |
| TTACTAGAATAAAGAACATG+TGG | 0.616653 | 1_4:-22481462 | None:intergenic |
| AGAAATCAAGCAGCTTTGTG+TGG | 0.618536 | 1_4:+22481619 | Msa0156400:CDS |
| GAAACAGGTTCAGCTTTCAG+AGG | 0.619149 | 1_4:+22481595 | Msa0156400:CDS |
| TTAAGCCTATTTGAGCATGG+TGG | 0.624084 | 1_4:+22483328 | Msa0156400:CDS |
| GCTGGCTCAACACAAATGGA+GGG | 0.630862 | 1_4:+22486214 | Msa0156400:three_prime_UTR |
| GAAAAGATTATATGTATGCA+TGG | 0.633670 | 1_4:+22483610 | Msa0156400:CDS |
| GATTCTACGACGAATGCAAG+AGG | 0.633685 | 1_4:+22483515 | Msa0156400:CDS |
| ACAAGTAGTTGGAACGTGGA+GGG | 0.641155 | 1_4:-22483354 | None:intergenic |
| AACAAGTAGTTGGAACGTGG+AGG | 0.651695 | 1_4:-22483355 | None:intergenic |
| TATGAATAGAGGAAGCACTA+GGG | 0.657460 | 1_4:-22486305 | None:intergenic |
| AAGAACAAGTAGTTGGAACG+TGG | 0.682620 | 1_4:-22483358 | None:intergenic |
| TTAGGTGACTATGTGGACCG+TGG | 0.683185 | 1_4:+22483379 | Msa0156400:CDS |
| AAGATTATATGTATGCATGG+TGG | 0.692863 | 1_4:+22483613 | Msa0156400:CDS |
| GGTTGGGGTGTTAATGAACG+TGG | 0.714430 | 1_4:+22483754 | Msa0156400:CDS |
| TGGAGAGTTTGACAATGCTG+GGG | 0.744427 | 1_4:+22484598 | Msa0156400:CDS |
| TTGATGTTAGAGGAAGACCT+GGG | 0.755374 | 1_4:+22481573 | Msa0156400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTAATAGTTT+AGG | + | chr1_4:22482468-22482487 | Msa0156400:intron | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTTG+AGG | + | chr1_4:22482715-22482734 | Msa0156400:intron | 10.0% |
| !!! | AATTTTTTTCATTTTGATTT+TGG | + | chr1_4:22485199-22485218 | Msa0156400:intron | 10.0% |
| !!! | TATTTTCTATTTTAGATTTT+CGG | - | chr1_4:22485681-22485700 | None:intergenic | 10.0% |
| !! | CAAACAAAAATTATTAAAAT+TGG | + | chr1_4:22485704-22485723 | Msa0156400:intron | 10.0% |
| !! | AAAAGAAGAAAAAAAAAAAA+AGG | - | chr1_4:22486254-22486273 | None:intergenic | 10.0% |
| !! | AAAAAAGAAAAAAGAAAATG+AGG | - | chr1_4:22481726-22481745 | None:intergenic | 15.0% |
| !!! | AAGTCGTTTTATATATTTTA+AGG | + | chr1_4:22482397-22482416 | Msa0156400:intron | 15.0% |
| !!! | TTAAAGTTTATGTTCATTTT+TGG | + | chr1_4:22482632-22482651 | Msa0156400:intron | 15.0% |
| !! | AAATGAAACTAAATTTAACA+AGG | - | chr1_4:22482830-22482849 | None:intergenic | 15.0% |
| !!! | ACAAGAATTCTTTTTTTTTT+TGG | - | chr1_4:22483217-22483236 | None:intergenic | 15.0% |
| !! | TTTAGTAATATCTAAATTTG+AGG | + | chr1_4:22483926-22483945 | Msa0156400:intron | 15.0% |
| !! | AAATGTTTGATATATAACAA+CGG | + | chr1_4:22484083-22484102 | Msa0156400:intron | 15.0% |
| !! | AAAAAAAAATCAGGAAATTA+CGG | - | chr1_4:22484291-22484310 | None:intergenic | 15.0% |
| !!! | AATTTGCTTTTATTTTTTCA+AGG | + | chr1_4:22484323-22484342 | Msa0156400:intron | 15.0% |
| !! | TGAAATATCAATATATTTGT+TGG | - | chr1_4:22484737-22484756 | None:intergenic | 15.0% |
| !!! | TTTTCAAAATTACAATGTTA+AGG | - | chr1_4:22485068-22485087 | None:intergenic | 15.0% |
| !! | AAATTATACATAACAAAACA+TGG | + | chr1_4:22485102-22485121 | Msa0156400:intron | 15.0% |
| !!! | TCAAAATGATAAAAACATTT+TGG | - | chr1_4:22485347-22485366 | None:intergenic | 15.0% |
| !! | AATGAAACACAATAAAATAT+AGG | - | chr1_4:22485949-22485968 | None:intergenic | 15.0% |
| !!! | CTTTTTATTTTATTTTCAGA+AGG | + | chr1_4:22486040-22486059 | Msa0156400:intron | 15.0% |
| !! | AATTTAGAGGAAGAAAAAAA+AGG | - | chr1_4:22481493-22481512 | None:intergenic | 20.0% |
| !! | AAAGTAACAACAAAATTTAG+AGG | - | chr1_4:22481506-22481525 | None:intergenic | 20.0% |
| !!! | TTTTAGTCAATTTAAGTGTA+TGG | + | chr1_4:22481769-22481788 | Msa0156400:intron | 20.0% |
| !!! | ATCAAATTTTGTTACATTCA+AGG | + | chr1_4:22481835-22481854 | Msa0156400:intron | 20.0% |
| !!! | TCAAATTTTGTTACATTCAA+GGG | + | chr1_4:22481836-22481855 | Msa0156400:intron | 20.0% |
| !! | ACTCATATTTAATGATTAGT+GGG | - | chr1_4:22482096-22482115 | None:intergenic | 20.0% |
| !! | CAATTTATGAGCTAAATTAA+TGG | - | chr1_4:22482226-22482245 | None:intergenic | 20.0% |
| !! | ATAAATGAAATCTGCAAATT+TGG | + | chr1_4:22482297-22482316 | Msa0156400:intron | 20.0% |
| !!! | ATTTTTGGTCTAATTGAAAT+TGG | + | chr1_4:22482647-22482666 | Msa0156400:intron | 20.0% |
| !!! | ATTATATTTTTGGAAAACAG+AGG | - | chr1_4:22482853-22482872 | None:intergenic | 20.0% |
| !!! | TATTTTTTTCTTAAAGGGAA+AGG | + | chr1_4:22482934-22482953 | Msa0156400:intron | 20.0% |
| !!! | TTCACTATGTTATTATTTTC+AGG | + | chr1_4:22483277-22483296 | Msa0156400:intron | 20.0% |
| !! | GGAACTAAAAACATATTTAA+CGG | - | chr1_4:22483884-22483903 | None:intergenic | 20.0% |
| !!! | AGTATTCACTCTAAAAATTA+AGG | + | chr1_4:22484386-22484405 | Msa0156400:intron | 20.0% |
| !! | AAGGACTAAAATTAAAAAGT+CGG | + | chr1_4:22484405-22484424 | Msa0156400:intron | 20.0% |
| !!! | AGAAATTCGAATAATGTTTT+TGG | + | chr1_4:22484783-22484802 | Msa0156400:intron | 20.0% |
| !! | TTAAGTTTATGAATGCAAAT+GGG | + | chr1_4:22485138-22485157 | Msa0156400:intron | 20.0% |
| !! | AAATACTAAGAAAACCTTAA+TGG | + | chr1_4:22485654-22485673 | Msa0156400:intron | 20.0% |
| !!! | AATAAAACTGATTTCCAAAA+AGG | + | chr1_4:22485736-22485755 | Msa0156400:intron | 20.0% |
| !! | ATCACTTTCATAAATTTCAA+TGG | + | chr1_4:22485865-22485884 | Msa0156400:intron | 20.0% |
| ! | TTACTAGAATAAAGAACATG+TGG | - | chr1_4:22481465-22481484 | None:intergenic | 25.0% |
| !!! | TGTTGTTACTTTCTTGATTA+TGG | + | chr1_4:22481514-22481533 | Msa0156400:exon | 25.0% |
| !! | TTCTTGATGGTATCATTAAT+AGG | + | chr1_4:22481546-22481565 | Msa0156400:CDS | 25.0% |
| ! | TAGTTACCACATATCTTAAT+TGG | - | chr1_4:22481695-22481714 | None:intergenic | 25.0% |
| ! | AAAAACCACATAGAAAAACA+TGG | - | chr1_4:22481795-22481814 | None:intergenic | 25.0% |
| !! | CAAATTTTGTTACATTCAAG+GGG | + | chr1_4:22481837-22481856 | Msa0156400:intron | 25.0% |
| ! | GACTCATATTTAATGATTAG+TGG | - | chr1_4:22482097-22482116 | None:intergenic | 25.0% |
| !! | TGTTTGAAACTTCTGATTAT+TGG | - | chr1_4:22482130-22482149 | None:intergenic | 25.0% |
| !!! | TTTAACTTTTTTCAGAAGCA+CGG | + | chr1_4:22482554-22482573 | Msa0156400:intron | 25.0% |
| !! | TGGTATATTTTTCTACTTAG+TGG | + | chr1_4:22482582-22482601 | Msa0156400:intron | 25.0% |
| ! | TCTATAGACATCACATAATT+TGG | + | chr1_4:22482900-22482919 | Msa0156400:intron | 25.0% |
| ! | AAAAGAGATTATGTCTAATG+AGG | - | chr1_4:22483079-22483098 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGACTTGAGTAT+TGG | + | chr1_4:22483095-22483114 | Msa0156400:intron | 25.0% |
| ! | AATTCTTGTCTACTAAAACA+AGG | + | chr1_4:22483228-22483247 | Msa0156400:intron | 25.0% |
| !!! | TTATTTTCAGGAGATATTCA+TGG | + | chr1_4:22483289-22483308 | Msa0156400:intron | 25.0% |
| !!! | TTCAGGGTATTTTATTTTGT+AGG | - | chr1_4:22483440-22483459 | None:intergenic | 25.0% |
| ! | GAAAAGATTATATGTATGCA+TGG | + | chr1_4:22483610-22483629 | Msa0156400:CDS | 25.0% |
| ! | TCGAACTTTCACAAATATAT+AGG | - | chr1_4:22483905-22483924 | None:intergenic | 25.0% |
| !!! | ATCCAAGATTTTAACTCTTA+AGG | - | chr1_4:22484127-22484146 | None:intergenic | 25.0% |
| ! | TTAAGAGTTAAAATCTTGGA+TGG | + | chr1_4:22484126-22484145 | Msa0156400:intron | 25.0% |
| !! | TAGTCCTTTGAAAGAAAATT+AGG | + | chr1_4:22484255-22484274 | Msa0156400:intron | 25.0% |
| !! | TTGTCCTAATTTTCTTTCAA+AGG | - | chr1_4:22484262-22484281 | None:intergenic | 25.0% |
| !!! | ATTTTTTCAAGGACCAAATT+AGG | + | chr1_4:22484334-22484353 | Msa0156400:intron | 25.0% |
| ! | AAAAACAATGTCACCTAATT+TGG | - | chr1_4:22484350-22484369 | None:intergenic | 25.0% |
| !! | TCTTGTGTATTGTTTTCTAT+AGG | + | chr1_4:22484505-22484524 | Msa0156400:intron | 25.0% |
| !! | TTTTCAGATATTAAAACCTG+TGG | + | chr1_4:22484655-22484674 | Msa0156400:CDS | 25.0% |
| ! | TTCTTAACATTTGCAAATTC+TGG | - | chr1_4:22484767-22484786 | None:intergenic | 25.0% |
| ! | TTAAATGTAATCACATGTGT+CGG | + | chr1_4:22484916-22484935 | Msa0156400:intron | 25.0% |
| ! | AAAATTACAATGTTAAGGTC+AGG | - | chr1_4:22485063-22485082 | None:intergenic | 25.0% |
| ! | CTTAAGTTTATGAATGCAAA+TGG | + | chr1_4:22485137-22485156 | Msa0156400:intron | 25.0% |
| ! | TGATATGAAACCTTAAGTAA+GGG | - | chr1_4:22485251-22485270 | None:intergenic | 25.0% |
| ! | ATGATATGAAACCTTAAGTA+AGG | - | chr1_4:22485252-22485271 | None:intergenic | 25.0% |
| ! | TTAGATTATCCTAAGTACAA+TGG | + | chr1_4:22485389-22485408 | Msa0156400:intron | 25.0% |
| ! | ATATTAATGCCATTGTACTT+AGG | - | chr1_4:22485401-22485420 | None:intergenic | 25.0% |
| ! | TAAGTACAATGGCATTAATA+TGG | + | chr1_4:22485400-22485419 | Msa0156400:intron | 25.0% |
| !! | TGACTATTATCATACCTTTT+TGG | - | chr1_4:22485753-22485772 | None:intergenic | 25.0% |
| ! | GAAATTTATGAAAGTGATGT+AGG | - | chr1_4:22485863-22485882 | None:intergenic | 25.0% |
| !!! | TAGCATCACTTTTGAAACAA+AGG | - | chr1_4:22481415-22481434 | None:intergenic | 30.0% |
| TTTCTTGATTATGGAACGAA+GGG | + | chr1_4:22481523-22481542 | Msa0156400:exon | 30.0% | |
| AACCTTATTAAAGCAACCTA+TGG | + | chr1_4:22482738-22482757 | Msa0156400:intron | 30.0% | |
| ! | TTCCATAGGTTGCTTTAATA+AGG | - | chr1_4:22482743-22482762 | None:intergenic | 30.0% |
| ATTCAGTGTGTTATAACTAG+TGG | + | chr1_4:22482777-22482796 | Msa0156400:intron | 30.0% | |
| TTAACAAGGTAACTGAATCA+TGG | - | chr1_4:22482816-22482835 | None:intergenic | 30.0% | |
| ! | CTATTTTACAATTCTCTTCG+AGG | + | chr1_4:22482991-22483010 | Msa0156400:intron | 30.0% |
| ! | CTCTTAGTGCTAATTTTAGA+TGG | + | chr1_4:22483151-22483170 | Msa0156400:intron | 30.0% |
| ! | GTCTACTAAAACAAGGTATT+AGG | + | chr1_4:22483235-22483254 | Msa0156400:intron | 30.0% |
| !!! | TTTCCAAACTTTGTTTTCCA+CGG | - | chr1_4:22483399-22483418 | None:intergenic | 30.0% |
| ! | GTAGAAGGAAAAAGTTTTCA+GGG | - | chr1_4:22483456-22483475 | None:intergenic | 30.0% |
| AAGATTATATGTATGCATGG+TGG | + | chr1_4:22483613-22483632 | Msa0156400:CDS | 30.0% | |
| TGTTTCAAACTATGCAATTC+AGG | - | chr1_4:22483646-22483665 | None:intergenic | 30.0% | |
| ! | AACAGATAAGTAATTTGCCA+AGG | + | chr1_4:22483662-22483681 | Msa0156400:CDS | 30.0% |
| ! | GTCTTTTATGTGATCTTTTG+TGG | + | chr1_4:22483707-22483726 | Msa0156400:CDS | 30.0% |
| TAGTAAAGATGTTCATGGTT+GGG | + | chr1_4:22483738-22483757 | Msa0156400:CDS | 30.0% | |
| CATCTAAGTATACAAGCATT+GGG | - | chr1_4:22483968-22483987 | None:intergenic | 30.0% | |
| ACATCTAAGTATACAAGCAT+TGG | - | chr1_4:22483969-22483988 | None:intergenic | 30.0% | |
| ! | TTTTTACTGGGAACTAAACT+CGG | - | chr1_4:22484002-22484021 | None:intergenic | 30.0% |
| TTAGTTCCCAGTAAAAACTA+CGG | + | chr1_4:22484005-22484024 | Msa0156400:intron | 30.0% | |
| !!! | ATTTTAACTCTTAAGGCACT+AGG | - | chr1_4:22484120-22484139 | None:intergenic | 30.0% |
| TGCCTTAAGAGTTAAAATCT+TGG | + | chr1_4:22484122-22484141 | Msa0156400:intron | 30.0% | |
| ! | ATTTTTCTTAGCGACCAAAT+CGG | - | chr1_4:22484224-22484243 | None:intergenic | 30.0% |
| TCGTCGTGAAAAAAAAAATC+AGG | - | chr1_4:22484300-22484319 | None:intergenic | 30.0% | |
| TTTCTATAGGTTGTTGAAGA+TGG | + | chr1_4:22484518-22484537 | Msa0156400:intron | 30.0% | |
| GATCATAAAATGCCTAAGTT+TGG | + | chr1_4:22484677-22484696 | Msa0156400:CDS | 30.0% | |
| !!! | AAATGCCTAAGTTTGGTTTT+AGG | + | chr1_4:22484684-22484703 | Msa0156400:CDS | 30.0% |
| !!! | TTGCAAAACTCGTCATTTTT+AGG | - | chr1_4:22485019-22485038 | None:intergenic | 30.0% |
| ! | TAAAAATGACGAGTTTTGCA+AGG | + | chr1_4:22485018-22485037 | Msa0156400:intron | 30.0% |
| GTTATTTGTTCCCTTACTTA+AGG | + | chr1_4:22485238-22485257 | Msa0156400:intron | 30.0% | |
| TAAATGAAAAGATGTCTCTC+TGG | + | chr1_4:22485614-22485633 | Msa0156400:intron | 30.0% | |
| AAATGAAAAGATGTCTCTCT+GGG | + | chr1_4:22485615-22485634 | Msa0156400:intron | 30.0% | |
| ! | TTTAGATTTTCGGTCCATTA+AGG | - | chr1_4:22485671-22485690 | None:intergenic | 30.0% |
| AATAGTGTAAGTTTGACATC+TGG | - | chr1_4:22485784-22485803 | None:intergenic | 30.0% | |
| TTTATGAAAGTGATGTAGGA+AGG | - | chr1_4:22485859-22485878 | None:intergenic | 30.0% | |
| !!! | TATTTTCAGAAGGCATTTCT+TGG | + | chr1_4:22486050-22486069 | Msa0156400:intron | 30.0% |
| GACTATAAGATGACTAAAGT+TGG | + | chr1_4:22486098-22486117 | Msa0156400:three_prime_UTR | 30.0% | |
| ACAACCAGATTTATGAATAG+AGG | - | chr1_4:22486319-22486338 | None:intergenic | 30.0% | |
| TAAATCTGGTTGTATTACTG+TGG | + | chr1_4:22486326-22486345 | Msa0156400:three_prime_UTR | 30.0% | |
| CTTTCTTGATTATGGAACGA+AGG | + | chr1_4:22481522-22481541 | Msa0156400:exon | 35.0% | |
| AATAGGTTGCTTGATGTTAG+AGG | + | chr1_4:22481563-22481582 | Msa0156400:CDS | 35.0% | |
| ! | TATGGCCATGTTTTTCTATG+TGG | + | chr1_4:22481787-22481806 | Msa0156400:intron | 35.0% |
| GTTACATTCAAGGGGATATA+AGG | + | chr1_4:22481845-22481864 | Msa0156400:intron | 35.0% | |
| !! | ATGTGCAAATTTGCTAAGAG+TGG | - | chr1_4:22481932-22481951 | None:intergenic | 35.0% |
| AACGACTTAGAGAGTTGAAA+TGG | - | chr1_4:22481990-22482009 | None:intergenic | 35.0% | |
| ACCAATCTATATCCACTTTG+TGG | + | chr1_4:22482153-22482172 | Msa0156400:intron | 35.0% | |
| TCCACAAAGTGGATATAGAT+TGG | - | chr1_4:22482157-22482176 | None:intergenic | 35.0% | |
| ATCTATATCCACTTTGTGGA+AGG | + | chr1_4:22482157-22482176 | Msa0156400:intron | 35.0% | |
| AACGACTTAGAGAGTTGAAA+CGG | - | chr1_4:22481990-22482009 | None:intergenic | 35.0% | |
| GAACATGAATGTTGTTCCAT+AGG | - | chr1_4:22482757-22482776 | None:intergenic | 35.0% | |
| ! | ATTTAGAACTTTGTCCCTTG+AGG | + | chr1_4:22483022-22483041 | Msa0156400:intron | 35.0% |
| GATTATGTCTAATGAGGTGT+CGG | - | chr1_4:22483073-22483092 | None:intergenic | 35.0% | |
| ! | TCAAAACTAAGACTCTGAGA+AGG | - | chr1_4:22483129-22483148 | None:intergenic | 35.0% |
| CATGCTCAAATAGGCTTAAT+AGG | - | chr1_4:22483327-22483346 | None:intergenic | 35.0% | |
| CTATTAAGCCTATTTGAGCA+TGG | + | chr1_4:22483325-22483344 | Msa0156400:CDS | 35.0% | |
| ! | CGTAGAAGGAAAAAGTTTTC+AGG | - | chr1_4:22483457-22483476 | None:intergenic | 35.0% |
| !! | GAAAACTTTTTCCTTCTACG+AGG | + | chr1_4:22483457-22483476 | Msa0156400:CDS | 35.0% |
| ! | GATTTATGGAAGCACATTCA+TGG | - | chr1_4:22483486-22483505 | None:intergenic | 35.0% |
| CAAGAGGAGATTCAATGTAA+GGG | + | chr1_4:22483531-22483550 | Msa0156400:CDS | 35.0% | |
| AGATTGTTTCAACTGTTTGC+CGG | + | chr1_4:22483570-22483589 | Msa0156400:CDS | 35.0% | |
| TCACATAAAAGACCAGTTTC+AGG | - | chr1_4:22483700-22483719 | None:intergenic | 35.0% | |
| GATCCTAGTAAAGATGTTCA+TGG | + | chr1_4:22483733-22483752 | Msa0156400:CDS | 35.0% | |
| CAACCATGAACATCTTTACT+AGG | - | chr1_4:22483739-22483758 | None:intergenic | 35.0% | |
| CTAGTAAAGATGTTCATGGT+TGG | + | chr1_4:22483737-22483756 | Msa0156400:CDS | 35.0% | |
| AGTAAAGATGTTCATGGTTG+GGG | + | chr1_4:22483739-22483758 | Msa0156400:CDS | 35.0% | |
| AGATTGCAGAGTTTCTTCAA+AGG | + | chr1_4:22483803-22483822 | Msa0156400:CDS | 35.0% | |
| TAGTTCCCAGTAAAAACTAC+GGG | + | chr1_4:22484006-22484025 | Msa0156400:intron | 35.0% | |
| AATCAAACTTGAACCAAGCA+AGG | - | chr1_4:22484033-22484052 | None:intergenic | 35.0% | |
| ! | TTGCTTGGTTCAAGTTTGAT+TGG | + | chr1_4:22484032-22484051 | Msa0156400:intron | 35.0% |
| ! | TTTTTCTTAGCGACCAAATC+GGG | - | chr1_4:22484223-22484242 | None:intergenic | 35.0% |
| ! | TTTTCTGCTCCTAATTACTG+TGG | + | chr1_4:22484578-22484597 | Msa0156400:CDS | 35.0% |
| TCAAACTCTCCACAGTAATT+AGG | - | chr1_4:22484590-22484609 | None:intergenic | 35.0% | |
| ! | TTAGGCATTTTATGATCCAC+AGG | - | chr1_4:22484674-22484693 | None:intergenic | 35.0% |
| AGCAAGAAACCTGTGAAAAT+AGG | + | chr1_4:22485546-22485565 | Msa0156400:intron | 35.0% | |
| GCAAGAAACCTGTGAAAATA+GGG | + | chr1_4:22485547-22485566 | Msa0156400:intron | 35.0% | |
| ! | AGAGTTTTCTCAAATTCTGG+TGG | - | chr1_4:22485582-22485601 | None:intergenic | 35.0% |
| ! | CAGAGAGTTTTCTCAAATTC+TGG | - | chr1_4:22485585-22485604 | None:intergenic | 35.0% |
| CTTTGTTCACTACAATGTGA+AGG | + | chr1_4:22486151-22486170 | Msa0156400:three_prime_UTR | 35.0% | |
| AGGATGACATCAATTGTCAA+TGG | + | chr1_4:22486179-22486198 | Msa0156400:three_prime_UTR | 35.0% | |
| CAATGGAACAACTTAATTGC+TGG | + | chr1_4:22486196-22486215 | Msa0156400:three_prime_UTR | 35.0% | |
| !! | TATGAATAGAGGAAGCACTA+GGG | - | chr1_4:22486308-22486327 | None:intergenic | 35.0% |
| !! | TTATGAATAGAGGAAGCACT+AGG | - | chr1_4:22486309-22486328 | None:intergenic | 35.0% |
| GCTTCCTCTATTCATAAATC+TGG | + | chr1_4:22486312-22486331 | Msa0156400:three_prime_UTR | 35.0% | |
| TTGATGTTAGAGGAAGACCT+GGG | + | chr1_4:22481573-22481592 | Msa0156400:CDS | 40.0% | |
| AAACAGGTTCAGCTTTCAGA+GGG | + | chr1_4:22481596-22481615 | Msa0156400:CDS | 40.0% | |
| ! | AGAAATCAAGCAGCTTTGTG+TGG | + | chr1_4:22481619-22481638 | Msa0156400:CDS | 40.0% |
| ! | CTTGAAGCAGCCTAATTTGT+TGG | + | chr1_4:22481658-22481677 | Msa0156400:CDS | 40.0% |
| !! | GCCTAATTTGTTGGAACTTG+AGG | + | chr1_4:22481667-22481686 | Msa0156400:CDS | 40.0% |
| GCCTCAAGTTCCAACAAATT+AGG | - | chr1_4:22481671-22481690 | None:intergenic | 40.0% | |
| ! | GAGGCACCAATTAAGATATG+TGG | + | chr1_4:22481686-22481705 | Msa0156400:CDS | 40.0% |
| CATTCAAGGGGATATAAGGT+TGG | + | chr1_4:22481849-22481868 | Msa0156400:intron | 40.0% | |
| ! | AAGGGGATATAAGGTTGGTT+TGG | + | chr1_4:22481854-22481873 | Msa0156400:intron | 40.0% |
| TTGTGTGTGCAAGTTTACGA+GGG | + | chr1_4:22481877-22481896 | Msa0156400:intron | 40.0% | |
| TTACGAGGGTAGTGATAAGA+TGG | + | chr1_4:22481891-22481910 | Msa0156400:intron | 40.0% | |
| GCAATTGCTCGTACTATGTT+GGG | - | chr1_4:22482047-22482066 | None:intergenic | 40.0% | |
| !! | TTTTCAGAAGCACGGTTTGT+TGG | + | chr1_4:22482562-22482581 | Msa0156400:intron | 40.0% |
| TTAAGCCTATTTGAGCATGG+TGG | + | chr1_4:22483328-22483347 | Msa0156400:CDS | 40.0% | |
| AAGAACAAGTAGTTGGAACG+TGG | - | chr1_4:22483361-22483380 | None:intergenic | 40.0% | |
| CGTTCCAACTACTTGTTCTT+AGG | + | chr1_4:22483361-22483380 | Msa0156400:CDS | 40.0% | |
| GTCACCTAAGAACAAGTAGT+TGG | - | chr1_4:22483368-22483387 | None:intergenic | 40.0% | |
| CTTGTTCTTAGGTGACTATG+TGG | + | chr1_4:22483372-22483391 | Msa0156400:CDS | 40.0% | |
| ATTCATGGTTTCCTCGTAGA+AGG | - | chr1_4:22483471-22483490 | None:intergenic | 40.0% | |
| GCAAGAGGAGATTCAATGTA+AGG | + | chr1_4:22483530-22483549 | Msa0156400:CDS | 40.0% | |
| GGAGATTCAATGTAAGGGTA+TGG | + | chr1_4:22483536-22483555 | Msa0156400:CDS | 40.0% | |
| ! | CGTGGTGTTTCGTTTACTTT+TGG | + | chr1_4:22483772-22483791 | Msa0156400:CDS | 40.0% |
| !! | CTTGATTTGTAGAGCTCATC+AGG | + | chr1_4:22483837-22483856 | Msa0156400:CDS | 40.0% |
| ! | AAGGTCCCGTAGTTTTTACT+GGG | - | chr1_4:22484014-22484033 | None:intergenic | 40.0% |
| GTTCAGATCTCTTGTGGAAT+CGG | + | chr1_4:22484148-22484167 | Msa0156400:intron | 40.0% | |
| GTGCTCCTAAAACCAAACTT+AGG | - | chr1_4:22484692-22484711 | None:intergenic | 40.0% | |
| ! | TAGGAGCACAACTTCATTCA+AGG | + | chr1_4:22484703-22484722 | Msa0156400:CDS | 40.0% |
| CACTTCGCATAGGTAATTGT+TGG | + | chr1_4:22484973-22484992 | Msa0156400:intron | 40.0% | |
| ! | AAATGACGAGTTTTGCAAGG+AGG | + | chr1_4:22485021-22485040 | Msa0156400:intron | 40.0% |
| CATAGCACACAGATTTGAGT+AGG | + | chr1_4:22485295-22485314 | Msa0156400:intron | 40.0% | |
| ! | CGAAAGTGTAGGTTAGCAAA+CGG | + | chr1_4:22485492-22485511 | Msa0156400:intron | 40.0% |
| ! | TGTTAGAGCCCTATTTTCAC+AGG | - | chr1_4:22485558-22485577 | None:intergenic | 40.0% |
| TGCACATATCGAAGATGAAG+TGG | - | chr1_4:22485831-22485850 | None:intergenic | 40.0% | |
| ACTACAATGTGAAGGATGAC+AGG | + | chr1_4:22486159-22486178 | Msa0156400:three_prime_UTR | 40.0% | |
| !! | AATTGCTGGCTCAACACAAA+TGG | + | chr1_4:22486210-22486229 | Msa0156400:three_prime_UTR | 40.0% |
| !! | TACTGTGGCACTGACAATTT+CGG | + | chr1_4:22486341-22486360 | Msa0156400:three_prime_UTR | 40.0% |
| ATGGAACGAAGGGTTCTTGA+TGG | + | chr1_4:22481533-22481552 | Msa0156400:CDS | 45.0% | |
| CTTGATGTTAGAGGAAGACC+TGG | + | chr1_4:22481572-22481591 | Msa0156400:CDS | 45.0% | |
| GAAACAGGTTCAGCTTTCAG+AGG | + | chr1_4:22481595-22481614 | Msa0156400:CDS | 45.0% | |
| GTTGTGTGTGCAAGTTTACG+AGG | + | chr1_4:22481876-22481895 | Msa0156400:intron | 45.0% | |
| GAGGGTAGTGATAAGATGGT+CGG | + | chr1_4:22481895-22481914 | Msa0156400:intron | 45.0% | |
| AGGGTAGTGATAAGATGGTC+GGG | + | chr1_4:22481896-22481915 | Msa0156400:intron | 45.0% | |
| GGCAATTGCTCGTACTATGT+TGG | - | chr1_4:22482048-22482067 | None:intergenic | 45.0% | |
| TATCCACTTTGTGGAAGGCT+TGG | + | chr1_4:22482162-22482181 | Msa0156400:intron | 45.0% | |
| TTACCAAGCCTTCCACAAAG+TGG | - | chr1_4:22482168-22482187 | None:intergenic | 45.0% | |
| TGGTTACTCTCTGTTGCTAC+TGG | + | chr1_4:22482667-22482686 | Msa0156400:intron | 45.0% | |
| ! | TCTCTGTTGCTACTGGTTAG+TGG | + | chr1_4:22482674-22482693 | Msa0156400:intron | 45.0% |
| GTTTGACCTTGGAACCTCAA+GGG | - | chr1_4:22483039-22483058 | None:intergenic | 45.0% | |
| GGAATCCACCATGCTCAAAT+AGG | - | chr1_4:22483336-22483355 | None:intergenic | 45.0% | |
| ACAAGTAGTTGGAACGTGGA+GGG | - | chr1_4:22483357-22483376 | None:intergenic | 45.0% | |
| AACAAGTAGTTGGAACGTGG+AGG | - | chr1_4:22483358-22483377 | None:intergenic | 45.0% | |
| GGACCGTGGAAAACAAAGTT+TGG | + | chr1_4:22483393-22483412 | Msa0156400:CDS | 45.0% | |
| GCTTCCATAAATCGCGTCTA+CGG | + | chr1_4:22483493-22483512 | Msa0156400:CDS | 45.0% | |
| GAATCCGTAGACGCGATTTA+TGG | - | chr1_4:22483500-22483519 | None:intergenic | 45.0% | |
| GATTCTACGACGAATGCAAG+AGG | + | chr1_4:22483515-22483534 | Msa0156400:CDS | 45.0% | |
| CCAGTTTCAGGAACTTCACT+TGG | - | chr1_4:22483688-22483707 | None:intergenic | 45.0% | |
| CCAAGTGAAGTTCCTGAAAC+TGG | + | chr1_4:22483685-22483704 | Msa0156400:CDS | 45.0% | |
| ! | CAAGGTCCCGTAGTTTTTAC+TGG | - | chr1_4:22484015-22484034 | None:intergenic | 45.0% |
| AAAAACTACGGGACCTTGCT+TGG | + | chr1_4:22484017-22484036 | Msa0156400:intron | 45.0% | |
| TGGATGGTTCAGATCTCTTG+TGG | + | chr1_4:22484142-22484161 | Msa0156400:intron | 45.0% | |
| TCTATCCAACAGACCCGATT+TGG | + | chr1_4:22484207-22484226 | Msa0156400:intron | 45.0% | |
| TGTGGAGAGTTTGACAATGC+TGG | + | chr1_4:22484596-22484615 | Msa0156400:CDS | 45.0% | |
| GTGGAGAGTTTGACAATGCT+GGG | + | chr1_4:22484597-22484616 | Msa0156400:CDS | 45.0% | |
| TGGAGAGTTTGACAATGCTG+GGG | + | chr1_4:22484598-22484617 | Msa0156400:CDS | 45.0% | |
| TGTTGACACACACTTCGCAT+AGG | + | chr1_4:22484963-22484982 | Msa0156400:intron | 45.0% | |
| GCAAGGAGGATTACTCTCAT+TGG | + | chr1_4:22485035-22485054 | Msa0156400:intron | 45.0% | |
| ACGTGTCTTTCTGACACAGT+TGG | + | chr1_4:22485465-22485484 | Msa0156400:intron | 45.0% | |
| ! | CAGTTGGAAGTCGAAAGTGT+AGG | + | chr1_4:22485481-22485500 | Msa0156400:intron | 45.0% |
| !!! | TAAATCATTAATTATATTTT+TGG | - | chr1_4:22482863-22482882 | None:intergenic | 5.0% |
| !!! | TTATTTTATTTTTTTCTTAA+AGG | + | chr1_4:22482928-22482947 | Msa0156400:intron | 5.0% |
| !!! | TATTTTATTTTTTTCTTAAA+GGG | + | chr1_4:22482929-22482948 | Msa0156400:intron | 5.0% |
| !! | AAACAAAAATTATTAAAATT+GGG | + | chr1_4:22485705-22485724 | Msa0156400:intron | 5.0% |
| TAGAGGAAGACCTGGGAAAC+AGG | + | chr1_4:22481580-22481599 | Msa0156400:CDS | 50.0% | |
| GAAAGCTGAACCTGTTTCCC+AGG | - | chr1_4:22481593-22481612 | None:intergenic | 50.0% | |
| GGGTAGTGATAAGATGGTCG+GGG | + | chr1_4:22481897-22481916 | Msa0156400:intron | 50.0% | |
| CTTTGTCCCTTGAGGTTCCA+AGG | + | chr1_4:22483030-22483049 | Msa0156400:intron | 50.0% | |
| GGTTTGACCTTGGAACCTCA+AGG | - | chr1_4:22483040-22483059 | None:intergenic | 50.0% | |
| !! | CTCGGTGTTAGGTTTGACCT+TGG | - | chr1_4:22483050-22483069 | None:intergenic | 50.0% |
| !! | TGTCTAATGAGGTGTCGGCT+CGG | - | chr1_4:22483068-22483087 | None:intergenic | 50.0% |
| TTAGGTGACTATGTGGACCG+TGG | + | chr1_4:22483379-22483398 | Msa0156400:CDS | 50.0% | |
| TTTCAACTGTTTGCCGGTCG+CGG | + | chr1_4:22483576-22483595 | Msa0156400:CDS | 50.0% | |
| TCAGGAACTTCACTTGGCCT+TGG | - | chr1_4:22483682-22483701 | None:intergenic | 50.0% | |
| ! | GGTTGGGGTGTTAATGAACG+TGG | + | chr1_4:22483754-22483773 | Msa0156400:CDS | 50.0% |
| GGGTCTGTTGGATAGACCAA+GGG | - | chr1_4:22484203-22484222 | None:intergenic | 50.0% | |
| GGTACGAGAAACAGAGAGAC+AGG | + | chr1_4:22485316-22485335 | Msa0156400:intron | 50.0% | |
| !! | TGCTGGCTCAACACAAATGG+AGG | + | chr1_4:22486213-22486232 | Msa0156400:three_prime_UTR | 50.0% |
| ! | GCTGGCTCAACACAAATGGA+GGG | + | chr1_4:22486214-22486233 | Msa0156400:three_prime_UTR | 50.0% |
| GTACGAGCAATTGCCCAGCT+AGG | + | chr1_4:22482053-22482072 | Msa0156400:intron | 55.0% | |
| TCATCGATGATAGCCGCGAC+CGG | - | chr1_4:22483592-22483611 | None:intergenic | 55.0% | |
| !! | ATAGACCAAGGGAGCGTCAG+AGG | - | chr1_4:22484192-22484211 | None:intergenic | 55.0% |
| CGGGTCTGTTGGATAGACCA+AGG | - | chr1_4:22484204-22484223 | None:intergenic | 55.0% | |
| AGCGACCAAATCGGGTCTGT+TGG | - | chr1_4:22484215-22484234 | None:intergenic | 55.0% | |
| CGCTCGAGCATAGCCTAGCT+GGG | - | chr1_4:22482069-22482088 | None:intergenic | 60.0% | |
| ACGCTCGAGCATAGCCTAGC+TGG | - | chr1_4:22482070-22482089 | None:intergenic | 60.0% | |
| !! | TGAGGTGTCGGCTCGGTGTT+AGG | - | chr1_4:22483061-22483080 | None:intergenic | 60.0% |
| TGTTGCCTCTGACGCTCCCT+TGG | + | chr1_4:22484184-22484203 | Msa0156400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 22481393 | 22486419 | 22481393 | ID=Msa0156400;Name=Msa0156400 |
| chr1_4 | mRNA | 22481393 | 22486419 | 22481393 | ID=Msa0156400-mRNA-1;Parent=Msa0156400;Name=Msa0156400-mRNA-1;_AED=0.04;_eAED=0.04;_QI=140|1|1|1|1|1|4|325|322 |
| chr1_4 | exon | 22481393 | 22481707 | 22481393 | ID=Msa0156400-mRNA-1:exon:8018;Parent=Msa0156400-mRNA-1 |
| chr1_4 | exon | 22483299 | 22483858 | 22483299 | ID=Msa0156400-mRNA-1:exon:8019;Parent=Msa0156400-mRNA-1 |
| chr1_4 | exon | 22484527 | 22484724 | 22484527 | ID=Msa0156400-mRNA-1:exon:8020;Parent=Msa0156400-mRNA-1 |
| chr1_4 | exon | 22486059 | 22486419 | 22486059 | ID=Msa0156400-mRNA-1:exon:8021;Parent=Msa0156400-mRNA-1 |
| chr1_4 | five_prime_UTR | 22481393 | 22481532 | 22481393 | ID=Msa0156400-mRNA-1:five_prime_utr;Parent=Msa0156400-mRNA-1 |
| chr1_4 | CDS | 22481533 | 22481707 | 22481533 | ID=Msa0156400-mRNA-1:cds;Parent=Msa0156400-mRNA-1 |
| chr1_4 | CDS | 22483299 | 22483858 | 22483299 | ID=Msa0156400-mRNA-1:cds;Parent=Msa0156400-mRNA-1 |
| chr1_4 | CDS | 22484527 | 22484724 | 22484527 | ID=Msa0156400-mRNA-1:cds;Parent=Msa0156400-mRNA-1 |
| chr1_4 | CDS | 22486059 | 22486094 | 22486059 | ID=Msa0156400-mRNA-1:cds;Parent=Msa0156400-mRNA-1 |
| chr1_4 | three_prime_UTR | 22486095 | 22486419 | 22486095 | ID=Msa0156400-mRNA-1:three_prime_utr;Parent=Msa0156400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
