Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015940 | sp|P48489|PP1_ORYSJ | 83.278 | 299 | 49 | 1 | 1 | 298 | 15 | 313 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008340 | Msa0015940 | 0.823290 | 1.499815e-53 | -8.615850e-47 |
| Msa0011720 | Msa0015940 | 0.808690 | 2.736289e-50 | -8.615850e-47 |
| Msa0015940 | Msa0032370 | 0.809075 | 2.263472e-50 | -8.615850e-47 |
| Msa0015940 | Msa0048000 | 0.824624 | 7.295783e-54 | -8.615850e-47 |
| Msa0015940 | Msa0050730 | 0.838323 | 3.078156e-57 | -8.615850e-47 |
| Msa0015940 | Msa0050760 | 0.840753 | 7.191968e-58 | -8.615850e-47 |
| Msa0015940 | Msa0102750 | 0.818955 | 1.495803e-52 | -8.615850e-47 |
| Msa0015940 | Msa0105420 | 0.816810 | 4.564580e-52 | -8.615850e-47 |
| Msa0015940 | Msa0140910 | 0.815151 | 1.070467e-51 | -8.615850e-47 |
| Msa0015940 | Msa0151690 | 0.802579 | 5.246709e-49 | -8.615850e-47 |
| Msa0015940 | Msa0156400 | 0.866756 | 2.259760e-65 | -8.615850e-47 |
| Msa0015940 | Msa0172350 | 0.801270 | 9.744578e-49 | -8.615850e-47 |
| Msa0015940 | Msa0189950 | 0.801588 | 8.389235e-49 | -8.615850e-47 |
| Msa0015940 | Msa0217400 | 0.828128 | 1.067920e-54 | -8.615850e-47 |
| Msa0015940 | Msa0219070 | 0.804998 | 1.650055e-49 | -8.615850e-47 |
| Msa0015940 | Msa0243690 | 0.810034 | 1.408650e-50 | -8.615850e-47 |
| Msa0015940 | Msa0243710 | 0.801680 | 8.030656e-49 | -8.615850e-47 |
| Msa0015940 | Msa0257250 | 0.819415 | 1.175611e-52 | -8.615850e-47 |
| Msa0015940 | Msa0260810 | 0.830442 | 2.930897e-55 | -8.615850e-47 |
| Msa0015940 | Msa0335040 | 0.848915 | 4.521729e-60 | -8.615850e-47 |
| Msa0015940 | Msa0389340 | 0.801620 | 8.262379e-49 | -8.615850e-47 |
| Msa0015940 | Msa0449830 | 0.803451 | 3.464683e-49 | -8.615850e-47 |
| Msa0015940 | Msa0476880 | 0.803134 | 4.028821e-49 | -8.615850e-47 |
| Msa0015940 | Msa0533050 | 0.804032 | 2.624556e-49 | -8.615850e-47 |
| Msa0015940 | Msa0572420 | 0.801256 | 9.811324e-49 | -8.615850e-47 |
| Msa0015940 | Msa0578970 | 0.846116 | 2.658748e-59 | -8.615850e-47 |
| Msa0015940 | Msa0610590 | 0.847646 | 1.013758e-59 | -8.615850e-47 |
| Msa0015940 | Msa0651190 | 0.850625 | 1.504209e-60 | -8.615850e-47 |
| Msa0015940 | Msa0663120 | 0.814791 | 1.287113e-51 | -8.615850e-47 |
| Msa0015940 | Msa0702350 | 0.815953 | 7.099288e-52 | -8.615850e-47 |
| Msa0015940 | Msa0702570 | 0.816575 | 5.153319e-52 | -8.615850e-47 |
| Msa0015940 | Msa0702680 | 0.817080 | 3.969739e-52 | -8.615850e-47 |
| Msa0015940 | Msa0716560 | 0.810327 | 1.218279e-50 | -8.615850e-47 |
| Msa0015940 | Msa0757950 | 0.818278 | 2.130429e-52 | -8.615850e-47 |
| Msa0015940 | Msa0804680 | 0.827194 | 1.790116e-54 | -8.615850e-47 |
| Msa0015940 | Msa0810480 | 0.822577 | 2.198909e-53 | -8.615850e-47 |
| Msa0015940 | Msa0867890 | 0.801458 | 8.918229e-49 | -8.615850e-47 |
| Msa0015940 | Msa0893810 | 0.838859 | 2.238419e-57 | -8.615850e-47 |
| Msa0015940 | Msa0903700 | 0.800929 | 1.144153e-48 | -8.615850e-47 |
| Msa0015940 | Msa0908170 | 0.854205 | 1.437657e-61 | -8.615850e-47 |
| Msa0015940 | Msa0910980 | -0.803625 | 3.188185e-49 | -8.615850e-47 |
| Msa0015940 | Msa0944770 | 0.802438 | 5.609995e-49 | -8.615850e-47 |
| Msa0015940 | Msa0959010 | 0.835454 | 1.662033e-56 | -8.615850e-47 |
| Msa0015940 | Msa0960160 | 0.802231 | 6.189754e-49 | -8.615850e-47 |
| Msa0015940 | Msa0982240 | 0.818510 | 1.887782e-52 | -8.615850e-47 |
| Msa0015940 | Msa0993530 | 0.833433 | 5.348661e-56 | -8.615850e-47 |
| Msa0015940 | Msa1020710 | 0.812606 | 3.895134e-51 | -8.615850e-47 |
| Msa0015940 | Msa1078710 | 0.807138 | 5.850126e-50 | -8.615850e-47 |
| Msa0015940 | Msa1087470 | 0.850441 | 1.694921e-60 | -8.615850e-47 |
| Msa0015940 | Msa1133710 | 0.809590 | 1.755613e-50 | -8.615850e-47 |
| Msa0015940 | Msa1170800 | 0.801248 | 9.849249e-49 | -8.615850e-47 |
| Msa0015940 | Msa1179940 | 0.810368 | 1.193528e-50 | -8.615850e-47 |
| Msa0015940 | Msa1179970 | 0.812610 | 3.888230e-51 | -8.615850e-47 |
| Msa0015940 | Msa1185540 | 0.835260 | 1.860555e-56 | -8.615850e-47 |
| Msa0015940 | Msa1224830 | 0.814701 | 1.347191e-51 | -8.615850e-47 |
| Msa0015940 | Msa1265070 | 0.803646 | 3.155739e-49 | -8.615850e-47 |
| Msa0015940 | Msa1269080 | 0.823754 | 1.168181e-53 | -8.615850e-47 |
| Msa0015940 | Msa1278840 | 0.819585 | 1.075058e-52 | -8.615850e-47 |
| Msa0015940 | Msa1318240 | 0.800205 | 1.607683e-48 | -8.615850e-47 |
| Msa0015940 | Msa1404540 | 0.832926 | 7.152759e-56 | -8.615850e-47 |
| Msa0015940 | Msa1408790 | 0.843767 | 1.144556e-58 | -8.615850e-47 |
| Msa0015940 | Msa1418580 | 0.803235 | 3.841225e-49 | -8.615850e-47 |
| Msa0015940 | Msa1423450 | 0.808913 | 2.451072e-50 | -8.615850e-47 |
| Msa0015940 | Msa1431060 | 0.829176 | 5.960360e-55 | -8.615850e-47 |
| Msa0015940 | Msa1436040 | 0.834350 | 3.153936e-56 | -8.615850e-47 |
| Msa0015940 | Msa1440600 | 0.840305 | 9.420064e-58 | -8.615850e-47 |
| Msa0015940 | Msa1447150 | 0.810013 | 1.423654e-50 | -8.615850e-47 |
| Msa0015940 | Msa1457430 | 0.801174 | 1.019868e-48 | -8.615850e-47 |
| Msa0015940 | Msa1459180 | 0.810009 | 1.426539e-50 | -8.615850e-47 |
| Msa0015940 | Msa1466460 | 0.830006 | 3.744849e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015940 | MtrunA17_Chr1g0167751 | 99.068 | 322 | 3 | 0 | 1 | 322 | 1 | 322 | 0.0 | 663 |
| Msa0015940 | MtrunA17_Chr1g0186811 | 82.569 | 327 | 48 | 2 | 1 | 319 | 1 | 326 | 0.0 | 570 |
| Msa0015940 | MtrunA17_Chr1g0190121 | 81.651 | 327 | 51 | 2 | 1 | 319 | 1 | 326 | 0.0 | 565 |
| Msa0015940 | MtrunA17_Chr7g0274931 | 82.263 | 327 | 49 | 2 | 1 | 319 | 1 | 326 | 0.0 | 560 |
| Msa0015940 | MtrunA17_Chr5g0436061 | 83.278 | 299 | 49 | 1 | 1 | 298 | 17 | 315 | 0.0 | 529 |
| Msa0015940 | MtrunA17_Chr8g0387541 | 75.161 | 310 | 75 | 2 | 1 | 309 | 1 | 309 | 7.36e-180 | 499 |
| Msa0015940 | MtrunA17_Chr8g0334361 | 75.517 | 290 | 71 | 0 | 6 | 295 | 4 | 293 | 3.18e-173 | 482 |
| Msa0015940 | MtrunA17_Chr7g0272371 | 71.661 | 307 | 82 | 2 | 1 | 307 | 5 | 306 | 1.89e-167 | 468 |
| Msa0015940 | MtrunA17_Chr5g0445011 | 48.134 | 268 | 138 | 1 | 26 | 292 | 17 | 284 | 9.92e-94 | 280 |
| Msa0015940 | MtrunA17_Chr7g0268381 | 47.232 | 271 | 141 | 2 | 26 | 295 | 27 | 296 | 5.84e-92 | 276 |
| Msa0015940 | MtrunA17_Chr8g0364041 | 45.455 | 286 | 154 | 2 | 26 | 310 | 20 | 304 | 7.21e-92 | 276 |
| Msa0015940 | MtrunA17_Chr5g0415261 | 45.455 | 286 | 154 | 2 | 26 | 310 | 20 | 304 | 1.60e-90 | 272 |
| Msa0015940 | MtrunA17_Chr8g0378521 | 46.125 | 271 | 144 | 2 | 26 | 295 | 22 | 291 | 3.21e-89 | 269 |
| Msa0015940 | MtrunA17_Chr1g0165341 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 7.53e-87 | 263 |
| Msa0015940 | MtrunA17_Chr2g0322121 | 46.405 | 306 | 143 | 9 | 9 | 295 | 644 | 947 | 3.19e-80 | 262 |
| Msa0015940 | MtrunA17_Chr4g0025471 | 46.230 | 305 | 145 | 8 | 9 | 295 | 649 | 952 | 1.14e-77 | 255 |
| Msa0015940 | MtrunA17_Chr3g0097231 | 42.292 | 253 | 139 | 4 | 33 | 279 | 195 | 446 | 1.10e-67 | 219 |
| Msa0015940 | MtrunA17_Chr2g0330311 | 40.000 | 265 | 150 | 6 | 22 | 279 | 211 | 473 | 2.57e-61 | 203 |
| Msa0015940 | MtrunA17_Chr2g0330331 | 41.532 | 248 | 137 | 5 | 39 | 279 | 66 | 312 | 2.53e-57 | 188 |
| Msa0015940 | MtrunA17_Chr1g0196211 | 44.898 | 196 | 100 | 4 | 108 | 295 | 2 | 197 | 4.31e-50 | 167 |
| Msa0015940 | MtrunA17_Chr8g0369981 | 31.897 | 348 | 158 | 12 | 33 | 313 | 100 | 435 | 1.13e-40 | 147 |
| Msa0015940 | MtrunA17_Chr1g0196221 | 52.381 | 84 | 34 | 1 | 30 | 107 | 552 | 635 | 2.93e-22 | 97.4 |
| Msa0015940 | MtrunA17_Chr2g0330011 | 37.815 | 119 | 64 | 4 | 31 | 140 | 232 | 349 | 2.64e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015940 | AT2G39840.1 | 81.940 | 299 | 53 | 1 | 1 | 298 | 14 | 312 | 0.0 | 530 |
| Msa0015940 | AT2G29400.1 | 80.858 | 303 | 54 | 3 | 1 | 300 | 15 | 316 | 0.0 | 520 |
| Msa0015940 | AT5G59160.3 | 79.934 | 304 | 58 | 3 | 1 | 302 | 9 | 311 | 0.0 | 517 |
| Msa0015940 | AT5G59160.2 | 79.934 | 304 | 58 | 3 | 1 | 302 | 9 | 311 | 0.0 | 517 |
| Msa0015940 | AT5G59160.1 | 79.934 | 304 | 58 | 3 | 1 | 302 | 9 | 311 | 0.0 | 517 |
| Msa0015940 | AT5G43380.1 | 75.701 | 321 | 77 | 1 | 1 | 321 | 1 | 320 | 0.0 | 511 |
| Msa0015940 | AT5G43380.2 | 75.701 | 321 | 77 | 1 | 1 | 321 | 1 | 320 | 0.0 | 510 |
| Msa0015940 | AT5G43380.3 | 75.938 | 320 | 76 | 1 | 1 | 320 | 1 | 319 | 0.0 | 509 |
| Msa0015940 | AT1G64040.1 | 77.705 | 305 | 66 | 2 | 1 | 304 | 1 | 304 | 0.0 | 507 |
| Msa0015940 | AT3G46820.1 | 78.667 | 300 | 62 | 1 | 1 | 298 | 9 | 308 | 0.0 | 507 |
| Msa0015940 | AT4G11240.1 | 72.492 | 309 | 83 | 2 | 1 | 308 | 1 | 308 | 4.67e-174 | 485 |
| Msa0015940 | AT5G27840.1 | 71.290 | 310 | 80 | 2 | 1 | 303 | 9 | 316 | 5.18e-168 | 470 |
| Msa0015940 | AT3G05580.1 | 72.581 | 310 | 76 | 2 | 1 | 303 | 9 | 316 | 8.02e-168 | 469 |
| Msa0015940 | AT5G27840.4 | 71.429 | 308 | 82 | 2 | 1 | 304 | 9 | 314 | 1.05e-167 | 469 |
| Msa0015940 | AT5G27840.2 | 73.559 | 295 | 76 | 1 | 1 | 295 | 9 | 301 | 1.80e-167 | 469 |
| Msa0015940 | AT5G27840.3 | 73.559 | 295 | 76 | 1 | 1 | 295 | 9 | 301 | 1.80e-167 | 469 |
| Msa0015940 | AT3G05580.2 | 73.577 | 246 | 63 | 1 | 1 | 246 | 9 | 252 | 1.89e-134 | 382 |
| Msa0015940 | AT5G55260.1 | 48.507 | 268 | 137 | 1 | 26 | 292 | 17 | 284 | 4.28e-96 | 287 |
| Msa0015940 | AT4G26720.1 | 46.269 | 268 | 143 | 1 | 26 | 292 | 17 | 284 | 1.01e-93 | 281 |
| Msa0015940 | AT2G42500.1 | 47.080 | 274 | 143 | 2 | 26 | 298 | 27 | 299 | 2.49e-93 | 280 |
| Msa0015940 | AT3G58500.1 | 46.350 | 274 | 145 | 2 | 26 | 298 | 27 | 299 | 1.15e-91 | 276 |
| Msa0015940 | AT1G10430.2 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 1.09e-90 | 273 |
| Msa0015940 | AT1G10430.1 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 1.09e-90 | 273 |
| Msa0015940 | AT1G69960.1 | 45.105 | 286 | 155 | 2 | 26 | 310 | 21 | 305 | 2.38e-90 | 272 |
| Msa0015940 | AT1G59830.1 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 7.62e-90 | 271 |
| Msa0015940 | AT5G55260.2 | 42.071 | 309 | 137 | 2 | 26 | 292 | 17 | 325 | 1.58e-87 | 266 |
| Msa0015940 | AT3G19980.1 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 2.37e-86 | 262 |
| Msa0015940 | AT1G50370.1 | 44.106 | 263 | 144 | 3 | 25 | 285 | 15 | 276 | 3.66e-86 | 261 |
| Msa0015940 | AT4G03080.1 | 47.143 | 280 | 134 | 5 | 30 | 295 | 554 | 833 | 5.34e-80 | 260 |
| Msa0015940 | AT2G27210.2 | 45.902 | 305 | 146 | 8 | 9 | 295 | 650 | 953 | 5.06e-79 | 259 |
| Msa0015940 | AT2G27210.1 | 45.902 | 305 | 146 | 8 | 9 | 295 | 655 | 958 | 5.33e-79 | 259 |
| Msa0015940 | AT1G08420.2 | 46.230 | 305 | 145 | 8 | 9 | 295 | 661 | 964 | 9.60e-79 | 259 |
| Msa0015940 | AT1G08420.1 | 46.230 | 305 | 145 | 8 | 9 | 295 | 666 | 969 | 1.01e-78 | 259 |
| Msa0015940 | AT1G59830.2 | 48.908 | 229 | 115 | 2 | 26 | 253 | 20 | 247 | 3.16e-78 | 239 |
| Msa0015940 | AT2G42500.2 | 48.416 | 221 | 112 | 2 | 79 | 298 | 33 | 252 | 1.48e-74 | 230 |
| Msa0015940 | AT1G03445.2 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 2.15e-73 | 241 |
| Msa0015940 | AT1G03445.1 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 2.26e-73 | 241 |
| Msa0015940 | AT2G42810.1 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 4.61e-66 | 215 |
| Msa0015940 | AT2G42810.5 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 4.61e-66 | 215 |
| Msa0015940 | AT2G42810.4 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 4.61e-66 | 215 |
| Msa0015940 | AT2G42810.2 | 42.688 | 253 | 138 | 4 | 33 | 279 | 251 | 502 | 1.19e-65 | 216 |
| Msa0015940 | AT2G42810.3 | 42.688 | 253 | 138 | 4 | 33 | 279 | 250 | 501 | 1.38e-65 | 215 |
| Msa0015940 | AT2G42500.4 | 46.939 | 147 | 74 | 3 | 26 | 168 | 27 | 173 | 9.22e-43 | 146 |
| Msa0015940 | AT2G42500.5 | 46.104 | 154 | 77 | 4 | 26 | 175 | 27 | 178 | 3.01e-42 | 144 |
| Msa0015940 | AT2G42500.3 | 48.921 | 139 | 67 | 3 | 26 | 160 | 27 | 165 | 5.45e-42 | 144 |
| Msa0015940 | AT5G63870.1 | 30.205 | 341 | 170 | 13 | 33 | 306 | 52 | 391 | 3.81e-35 | 132 |
| Msa0015940 | AT5G63870.2 | 30.205 | 341 | 170 | 13 | 33 | 306 | 52 | 391 | 3.81e-35 | 132 |
| Msa0015940 | AT1G48120.1 | 30.872 | 298 | 146 | 6 | 31 | 268 | 628 | 925 | 1.78e-28 | 116 |
| Msa0015940 | AT5G63870.3 | 31.474 | 251 | 130 | 9 | 33 | 242 | 52 | 301 | 4.35e-28 | 110 |
| Msa0015940 | AT5G10900.2 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 2.32e-21 | 95.1 |
| Msa0015940 | AT5G10900.3 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 2.55e-21 | 95.1 |
| Msa0015940 | AT5G10900.1 | 28.276 | 290 | 149 | 11 | 55 | 302 | 225 | 497 | 2.86e-21 | 94.7 |
Find 81 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTACTTTCTTGATTA+TGG | 0.141574 | 1_1:+26160761 | Msa0015940:exon |
| CGTTCCAACTACTTGTTCTT+AGG | 0.194579 | 1_1:+26163580 | Msa0015940:CDS |
| GAATCCGTAGACGCGATTTA+TGG | 0.207636 | 1_1:-26163716 | None:intergenic |
| TAGTTACCACATATCTTAAT+TGG | 0.282650 | 1_1:-26160939 | None:intergenic |
| TGTTTCAAACTATGCAATTC+AGG | 0.295203 | 1_1:-26163862 | None:intergenic |
| TCAAACTCTCCACAGTAATT+AGG | 0.300714 | 1_1:-26164824 | None:intergenic |
| GCTTCCTCTATTCATAAATC+TGG | 0.307257 | 1_1:+26166441 | Msa0015940:three_prime_UTR |
| CATGCTCAAATAGGCTTAAT+AGG | 0.316064 | 1_1:-26163543 | None:intergenic |
| CTTGAAGCAGCCTAATTTGT+TGG | 0.324778 | 1_1:+26160905 | Msa0015940:CDS |
| TCACATAAAAGACCAGTTTC+AGG | 0.342012 | 1_1:-26163916 | None:intergenic |
| CGTGGTGTTTCATTTACTTT+TGG | 0.343305 | 1_1:+26163991 | Msa0015940:CDS |
| GATCATAAAATGCCTAAGTT+TGG | 0.343821 | 1_1:+26164914 | Msa0015940:CDS |
| ATTCATGGTTTCCTCGTAGA+AGG | 0.349139 | 1_1:-26163687 | None:intergenic |
| CAATGAAACAACTTAATTGC+TGG | 0.354049 | 1_1:+26166327 | Msa0015940:three_prime_UTR |
| GGAATCCACCATGCTCAAAT+AGG | 0.355827 | 1_1:-26163552 | None:intergenic |
| CTTGATTTGTAGAGCTCATC+AGG | 0.356629 | 1_1:+26164056 | Msa0015940:CDS |
| TTCTTGATGGTATCATTAAT+AGG | 0.371158 | 1_1:+26160793 | Msa0015940:CDS |
| GCCTCAAGTTCCAACAAATT+AGG | 0.376724 | 1_1:-26160915 | None:intergenic |
| CCAAGTGAAGTTCCTGAAAC+TGG | 0.383450 | 1_1:+26163904 | Msa0015940:CDS |
| TTTCTATAGGTTGTTGAAGA+TGG | 0.384025 | 1_1:+26164755 | Msa0015940:intron |
| AGATTGTTTCAACTGTTTGC+CGG | 0.384374 | 1_1:+26163789 | Msa0015940:CDS |
| AATAGGTTGCTTGATGTTAG+AGG | 0.400822 | 1_1:+26160810 | Msa0015940:CDS |
| GGACCGTGGAAAACAAAGTT+TGG | 0.405620 | 1_1:+26163612 | Msa0015940:CDS |
| GATTTATGGAAGCACATTCA+TGG | 0.406324 | 1_1:-26163702 | None:intergenic |
| TCAGGAACTTCACTTGGCCT+TGG | 0.409043 | 1_1:-26163898 | None:intergenic |
| TTACTTTCAGGAGATATTCA+TGG | 0.409622 | 1_1:+26163508 | Msa0015940:intron |
| AAAGTAACAACAAAATTTAG+AGG | 0.412264 | 1_1:-26160750 | None:intergenic |
| TAGAGGAAGACCTGGGAAAC+AGG | 0.412490 | 1_1:+26160827 | Msa0015940:CDS |
| TAGTAAAGATGTTCATGGTT+GGG | 0.413408 | 1_1:+26163957 | Msa0015940:CDS |
| CCAGTTTCAGGAACTTCACT+TGG | 0.414690 | 1_1:-26163904 | None:intergenic |
| GTATTACTGTGGCAGCATTT+CGG | 0.431083 | 1_1:+26166466 | Msa0015940:three_prime_UTR |
| GCAAGAGGAGATTCAATGTA+AGG | 0.431969 | 1_1:+26163749 | Msa0015940:CDS |
| ATGGAACGAAGGGTTCTTGA+TGG | 0.433784 | 1_1:+26160780 | Msa0015940:CDS |
| TAGGAGCACAACTTCATTCA+AGG | 0.442692 | 1_1:+26164940 | Msa0015940:CDS |
| GGAGATTCAATGTAAGGGTA+TGG | 0.442978 | 1_1:+26163755 | Msa0015940:CDS |
| GACTGTAAGATGACTAAAGT+TGG | 0.451058 | 1_1:+26166233 | Msa0015940:three_prime_UTR |
| GATCCTAGTAAAGATGTTCA+TGG | 0.464856 | 1_1:+26163952 | Msa0015940:CDS |
| TTTCAACTGTTTGCCGGTCG+CGG | 0.466909 | 1_1:+26163795 | Msa0015940:CDS |
| CAACCATGAACATCTTTACT+AGG | 0.473905 | 1_1:-26163955 | None:intergenic |
| TGTGGAGAGTTTGACAATGC+TGG | 0.482312 | 1_1:+26164833 | Msa0015940:CDS |
| GCCTAATTTGTTGGAACTTG+AGG | 0.482437 | 1_1:+26160914 | Msa0015940:CDS |
| ACAACCAGATTTATGAATAG+AGG | 0.484282 | 1_1:-26166445 | None:intergenic |
| AATTGCTGGCTCAATACAAA+TGG | 0.491404 | 1_1:+26166341 | Msa0015940:three_prime_UTR |
| GAAAGCTGAACCTGTTTCCC+AGG | 0.504004 | 1_1:-26160837 | None:intergenic |
| AGTAAAGATGTTCATGGTTG+GGG | 0.513074 | 1_1:+26163958 | Msa0015940:CDS |
| GCTTCCATAAATCGCGTCTA+CGG | 0.514773 | 1_1:+26163712 | Msa0015940:CDS |
| GTCACCTAAGAACAAGTAGT+TGG | 0.527172 | 1_1:-26163584 | None:intergenic |
| CTAGTAAAGATGTTCATGGT+TGG | 0.530691 | 1_1:+26163956 | Msa0015940:CDS |
| TGCTGGCTCAATACAAATGG+AGG | 0.543767 | 1_1:+26166344 | Msa0015940:three_prime_UTR |
| TTTCTTGATTATGGAACGAA+GGG | 0.547346 | 1_1:+26160770 | Msa0015940:exon |
| TCATCGATGATAGCCGCGAC+CGG | 0.549911 | 1_1:-26163808 | None:intergenic |
| CTTTCTTGATTATGGAACGA+AGG | 0.562095 | 1_1:+26160769 | Msa0015940:exon |
| AACAGATAAGTAATTTGCCA+AGG | 0.564405 | 1_1:+26163881 | Msa0015940:CDS |
| CTTGATGTTAGAGGAAGACC+TGG | 0.565129 | 1_1:+26160819 | Msa0015940:CDS |
| GTGCTCCTAAAACCAAACTT+AGG | 0.573212 | 1_1:-26164926 | None:intergenic |
| CTTTGTTCACTACAATGTGA+AGG | 0.576311 | 1_1:+26166290 | Msa0015940:three_prime_UTR |
| TTATGAATAGAGGAAGCACT+AGG | 0.581588 | 1_1:-26166435 | None:intergenic |
| GTGGAGAGTTTGACAATGCT+GGG | 0.589015 | 1_1:+26164834 | Msa0015940:CDS |
| CAAGAGGAGATTCAATGTAA+GGG | 0.594417 | 1_1:+26163750 | Msa0015940:CDS |
| CTTGTTCTTAGGTGACTATG+TGG | 0.595503 | 1_1:+26163591 | Msa0015940:CDS |
| AAACAGGTTCAGCTTTCAGA+GGG | 0.596976 | 1_1:+26160843 | Msa0015940:CDS |
| AGATTCAAGAGTTTCTTCAA+AGG | 0.599855 | 1_1:+26164022 | Msa0015940:CDS |
| CTATTAAGCCTATTTGAGCA+TGG | 0.607320 | 1_1:+26163544 | Msa0015940:CDS |
| GAGGCACCAATTAAGATATG+TGG | 0.612070 | 1_1:+26160933 | Msa0015940:CDS |
| TAAATCTGGTTGTATTACTG+TGG | 0.614635 | 1_1:+26166455 | Msa0015940:three_prime_UTR |
| TTACTAGAATAAAGAACATG+TGG | 0.616653 | 1_1:-26160709 | None:intergenic |
| AGAAATCAAGCAGCTTTGTG+TGG | 0.618536 | 1_1:+26160866 | Msa0015940:CDS |
| GAAACAGGTTCAGCTTTCAG+AGG | 0.619149 | 1_1:+26160842 | Msa0015940:CDS |
| TTAAGCCTATTTGAGCATGG+TGG | 0.624084 | 1_1:+26163547 | Msa0015940:CDS |
| GAAAAGATTATATGTATGCA+TGG | 0.633670 | 1_1:+26163829 | Msa0015940:CDS |
| GATTCTACGACGAATGCAAG+AGG | 0.633685 | 1_1:+26163734 | Msa0015940:CDS |
| GCTGGCTCAATACAAATGGA+GGG | 0.640422 | 1_1:+26166345 | Msa0015940:three_prime_UTR |
| ACAAGTAGTTGGAACGTGGA+GGG | 0.641155 | 1_1:-26163573 | None:intergenic |
| AACAAGTAGTTGGAACGTGG+AGG | 0.651695 | 1_1:-26163574 | None:intergenic |
| TATGAATAGAGGAAGCACTA+GGG | 0.657460 | 1_1:-26166434 | None:intergenic |
| AAGAACAAGTAGTTGGAACG+TGG | 0.682620 | 1_1:-26163577 | None:intergenic |
| TTAGGTGACTATGTGGACCG+TGG | 0.683185 | 1_1:+26163598 | Msa0015940:CDS |
| AAGATTATATGTATGCATGG+TGG | 0.692863 | 1_1:+26163832 | Msa0015940:CDS |
| GGTTGGGGTGTTAATGAACG+TGG | 0.714430 | 1_1:+26163973 | Msa0015940:CDS |
| TGGAGAGTTTGACAATGCTG+GGG | 0.744427 | 1_1:+26164835 | Msa0015940:CDS |
| TTGATGTTAGAGGAAGACCT+GGG | 0.755374 | 1_1:+26160820 | Msa0015940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGTAATAGTTT+AGG | + | chr1_1:26162676-26162695 | Msa0015940:intron | 10.0% |
| !!! | TTATTTTATTTTTTTCTTGA+AGG | + | chr1_1:26163145-26163164 | Msa0015940:intron | 10.0% |
| !!! | TATTTTATTTTTTTCTTGAA+GGG | + | chr1_1:26163146-26163165 | Msa0015940:intron | 10.0% |
| !!! | AAGAATTCTTTTTTTTTTTT+TGG | - | chr1_1:26163434-26163453 | None:intergenic | 10.0% |
| !!! | AAAATTACTTTTTTTATTCA+AGG | + | chr1_1:26164562-26164581 | Msa0015940:intron | 10.0% |
| !! | ATGAGTATTTAAAAAAATTA+AGG | + | chr1_1:26164622-26164641 | Msa0015940:intron | 10.0% |
| !! | AAAACAAGAATTATTAAAAT+TGG | + | chr1_1:26165829-26165848 | Msa0015940:intron | 10.0% |
| !! | AAACAAGAATTATTAAAATT+GGG | + | chr1_1:26165830-26165849 | Msa0015940:intron | 10.0% |
| !! | AAAAAAGAAAAAAGAAAATG+AGG | - | chr1_1:26160973-26160992 | None:intergenic | 15.0% |
| !! | TAAACAAAATGATTTATGTT+TGG | + | chr1_1:26161718-26161737 | Msa0015940:intron | 15.0% |
| !! | TAAACAAAATGATTTATGTT+TGG | + | chr1_1:26161718-26161737 | Msa0015940:intron | 15.0% |
| !! | TAAAGAATTAGAATTGATAA+AGG | + | chr1_1:26162302-26162321 | Msa0015940:intron | 15.0% |
| !! | AAAGAATTAGAATTGATAAA+GGG | + | chr1_1:26162303-26162322 | Msa0015940:intron | 15.0% |
| !!! | AAGTCGTTTTATATATTTTA+AGG | + | chr1_1:26162606-26162625 | Msa0015940:intron | 15.0% |
| !!! | TTAAAGTTTATGTTCATTTT+TGG | + | chr1_1:26162840-26162859 | Msa0015940:intron | 15.0% |
| !! | AAATGAAACTAAATTTAACA+AGG | - | chr1_1:26163047-26163066 | None:intergenic | 15.0% |
| !!! | CAAAATTTTTCTCAAATTTA+GGG | - | chr1_1:26164157-26164176 | None:intergenic | 15.0% |
| !!! | ACAAAATTTTTCTCAAATTT+AGG | - | chr1_1:26164158-26164177 | None:intergenic | 15.0% |
| !! | AAATTATACATAACATAACA+TGG | + | chr1_1:26165307-26165326 | Msa0015940:intron | 15.0% |
| !! | TTAAGTTTATGAATACAAAT+GGG | + | chr1_1:26165349-26165368 | Msa0015940:intron | 15.0% |
| !!! | TATTTTCTGTTTTAGATTTT+CGG | - | chr1_1:26165810-26165829 | None:intergenic | 15.0% |
| !!! | TGCTTATTATTATAACTTTT+TGG | - | chr1_1:26165880-26165899 | None:intergenic | 15.0% |
| !! | AATGAAACACAATAAAATAT+AGG | - | chr1_1:26166076-26166095 | None:intergenic | 15.0% |
| !!! | CTTTTTATTTTATTTTCAGA+AGG | + | chr1_1:26166175-26166194 | Msa0015940:intron | 15.0% |
| !! | AATTTAGAGGAAGAAAAAAA+AGG | - | chr1_1:26160740-26160759 | None:intergenic | 20.0% |
| !! | AAAGTAACAACAAAATTTAG+AGG | - | chr1_1:26160753-26160772 | None:intergenic | 20.0% |
| !!! | TTTTAGTCAATTTAAGTGTA+TGG | + | chr1_1:26161015-26161034 | Msa0015940:intron | 20.0% |
| !!! | ATCAAATTTTGTTACATTCA+AGG | + | chr1_1:26161081-26161100 | Msa0015940:intron | 20.0% |
| !!! | TCAAATTTTGTTACATTCAA+GGG | + | chr1_1:26161082-26161101 | Msa0015940:intron | 20.0% |
| !! | ACTCATATTTAATGATTAGT+GGG | - | chr1_1:26161342-26161361 | None:intergenic | 20.0% |
| !! | CAATTTATGAGCTAAATTAA+TGG | - | chr1_1:26161472-26161491 | None:intergenic | 20.0% |
| !! | ATAAATGAAATCTGCAAATT+TGG | + | chr1_1:26161543-26161562 | Msa0015940:intron | 20.0% |
| !! | ACTAAAATATACATAGCTAA+AGG | + | chr1_1:26161777-26161796 | Msa0015940:intron | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | + | chr1_1:26161808-26161827 | Msa0015940:intron | 20.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | + | chr1_1:26161809-26161828 | Msa0015940:intron | 20.0% |
| !!! | TAAGAGAATTGATTTATGTT+TGG | + | chr1_1:26162168-26162187 | Msa0015940:intron | 20.0% |
| !!! | ATTTTTGGTCTAATTGAAAT+TGG | + | chr1_1:26162855-26162874 | Msa0015940:intron | 20.0% |
| !!! | ATTATATTTTTGGAAAACAG+AGG | - | chr1_1:26163070-26163089 | None:intergenic | 20.0% |
| !! | GGAACTAAAAACATATTTAA+CGG | - | chr1_1:26164103-26164122 | None:intergenic | 20.0% |
| !!! | TGAAATATCAATATTTCTGT+TGG | - | chr1_1:26164974-26164993 | None:intergenic | 20.0% |
| !! | AGCAATTAGAATAATGTTAT+TGG | + | chr1_1:26165020-26165039 | Msa0015940:intron | 20.0% |
| !!! | TTTTCAAAATGACAATGTTA+AGG | - | chr1_1:26165274-26165293 | None:intergenic | 20.0% |
| !! | CTTAAGTTTATGAATACAAA+TGG | + | chr1_1:26165348-26165367 | Msa0015940:intron | 20.0% |
| !!! | CTTTGATGTTTTTTTCATTT+TGG | + | chr1_1:26165404-26165423 | Msa0015940:intron | 20.0% |
| !!! | TGTTTTTTTCATTTTGGTTT+TGG | + | chr1_1:26165410-26165429 | Msa0015940:intron | 20.0% |
| !! | ATGATATGAAACTTAAGTAA+GGG | - | chr1_1:26165462-26165481 | None:intergenic | 20.0% |
| !! | AATGATATGAAACTTAAGTA+AGG | - | chr1_1:26165463-26165482 | None:intergenic | 20.0% |
| !!! | CTAAAAATGATAACACATTT+TGG | - | chr1_1:26165556-26165575 | None:intergenic | 20.0% |
| !! | AAATACTAAGAAAACCTTAA+TGG | + | chr1_1:26165783-26165802 | Msa0015940:intron | 20.0% |
| !! | AATAGTGTAAGTTTGATATT+TGG | - | chr1_1:26165911-26165930 | None:intergenic | 20.0% |
| !! | ATATACTTAACGTACTAATT+TGG | + | chr1_1:26166011-26166030 | Msa0015940:intron | 20.0% |
| !! | AAAAGAAGAAAAGCAAAAAA+AGG | - | chr1_1:26166385-26166404 | None:intergenic | 20.0% |
| ! | TTACTAGAATAAAGAACATG+TGG | - | chr1_1:26160712-26160731 | None:intergenic | 25.0% |
| !!! | TGTTGTTACTTTCTTGATTA+TGG | + | chr1_1:26160761-26160780 | Msa0015940:exon | 25.0% |
| !! | TTCTTGATGGTATCATTAAT+AGG | + | chr1_1:26160793-26160812 | Msa0015940:CDS | 25.0% |
| ! | TAGTTACCACATATCTTAAT+TGG | - | chr1_1:26160942-26160961 | None:intergenic | 25.0% |
| ! | AAAAACCACATAGAAAAACA+TGG | - | chr1_1:26161041-26161060 | None:intergenic | 25.0% |
| !! | CAAATTTTGTTACATTCAAG+GGG | + | chr1_1:26161083-26161102 | Msa0015940:intron | 25.0% |
| ! | GACTCATATTTAATGATTAG+TGG | - | chr1_1:26161343-26161362 | None:intergenic | 25.0% |
| !! | TGTTTGAAACTTCTGATTAT+TGG | - | chr1_1:26161376-26161395 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | + | chr1_1:26161674-26161693 | Msa0015940:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | + | chr1_1:26162271-26162290 | Msa0015940:intron | 25.0% |
| !!! | TTTAACTTTTTTCAGAAGCA+CGG | + | chr1_1:26162762-26162781 | Msa0015940:intron | 25.0% |
| !! | TGGTATATTTTTCTACTTAG+TGG | + | chr1_1:26162790-26162809 | Msa0015940:intron | 25.0% |
| ! | TCTATAGACATCACATAATT+TGG | + | chr1_1:26163117-26163136 | Msa0015940:intron | 25.0% |
| !!! | TATTTTTTTCTTGAAGGGAA+AGG | + | chr1_1:26163151-26163170 | Msa0015940:intron | 25.0% |
| ! | AAAAGAGATTATGTCTAATG+AGG | - | chr1_1:26163296-26163315 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGACTTGAGTAT+TGG | + | chr1_1:26163312-26163331 | Msa0015940:intron | 25.0% |
| ! | AATTCTTGTCTACTAAAACA+AGG | + | chr1_1:26163447-26163466 | Msa0015940:intron | 25.0% |
| ! | TTCACTATGTTATTACTTTC+AGG | + | chr1_1:26163496-26163515 | Msa0015940:intron | 25.0% |
| !!! | TTCAGGGTATTTTATTTTGT+AGG | - | chr1_1:26163659-26163678 | None:intergenic | 25.0% |
| ! | GAAAAGATTATATGTATGCA+TGG | + | chr1_1:26163829-26163848 | Msa0015940:CDS | 25.0% |
| ! | TCGAAGTTTCATGATTATAT+AGG | - | chr1_1:26164124-26164143 | None:intergenic | 25.0% |
| ! | ATCCAAAATCTTAACTCTTA+AGG | - | chr1_1:26164328-26164347 | None:intergenic | 25.0% |
| !! | TTAAGAGTTAAGATTTTGGA+TGG | + | chr1_1:26164327-26164346 | Msa0015940:intron | 25.0% |
| ! | ACTTAGTCCTTGAAAAAAAT+CGG | + | chr1_1:26164453-26164472 | Msa0015940:intron | 25.0% |
| ! | CATGAAAAAATTGGATCTTA+CGG | - | chr1_1:26164489-26164508 | None:intergenic | 25.0% |
| ! | TAGAGTAGACATGAAAAAAT+TGG | - | chr1_1:26164498-26164517 | None:intergenic | 25.0% |
| !!! | TTTTTTCATGTCTACTCTAT+AGG | + | chr1_1:26164499-26164518 | Msa0015940:intron | 25.0% |
| !! | TTTTATTCAAGGACCAAATT+AGG | + | chr1_1:26164573-26164592 | Msa0015940:intron | 25.0% |
| !!! | TCTTGTGTTTTGTTTTCTAT+AGG | + | chr1_1:26164742-26164761 | Msa0015940:intron | 25.0% |
| !! | TTTTCAGATATTAAAACCTG+TGG | + | chr1_1:26164892-26164911 | Msa0015940:CDS | 25.0% |
| ! | GGGAAAAAGAATAATGTTTA+AGG | + | chr1_1:26165369-26165388 | Msa0015940:intron | 25.0% |
| !!! | AGAATTTTTTCAAATTCTGG+TGG | - | chr1_1:26165711-26165730 | None:intergenic | 25.0% |
| !!! | CAGAGAATTTTTTCAAATTC+TGG | - | chr1_1:26165714-26165733 | None:intergenic | 25.0% |
| ! | GAAATTTATGAAAGTGATGT+AGG | - | chr1_1:26165990-26166009 | None:intergenic | 25.0% |
| !!! | TAGCATCACTTTTGAAACAA+AGG | - | chr1_1:26160662-26160681 | None:intergenic | 30.0% |
| TTTCTTGATTATGGAACGAA+GGG | + | chr1_1:26160770-26160789 | Msa0015940:exon | 30.0% | |
| ATATTCAAAGCTGAACCAAA+CGG | - | chr1_1:26161600-26161619 | None:intergenic | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | + | chr1_1:26161995-26162014 | Msa0015940:intron | 30.0% |
| ATATTCAAAGCTGAACCAAA+CGG | - | chr1_1:26161600-26161619 | None:intergenic | 30.0% | |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | + | chr1_1:26161995-26162014 | Msa0015940:intron | 30.0% |
| !! | CACTGTAGAGAATTGATTTT+GGG | + | chr1_1:26162018-26162037 | Msa0015940:intron | 30.0% |
| ! | GCTAATGTTACTGCTATTTA+GGG | - | chr1_1:26162572-26162591 | None:intergenic | 30.0% |
| AACCTTATTAAAGCAACCTA+TGG | + | chr1_1:26162955-26162974 | Msa0015940:intron | 30.0% | |
| ! | TTCCATAGGTTGCTTTAATA+AGG | - | chr1_1:26162960-26162979 | None:intergenic | 30.0% |
| ATTCAGTGTGTTATAACTAG+TGG | + | chr1_1:26162994-26163013 | Msa0015940:intron | 30.0% | |
| TTAACAAGGTAACTGAATCA+TGG | - | chr1_1:26163033-26163052 | None:intergenic | 30.0% | |
| ! | CTATTTTACAATTCTCTTCG+AGG | + | chr1_1:26163208-26163227 | Msa0015940:intron | 30.0% |
| ! | CTCTTAGTGCTAATTTTAGA+TGG | + | chr1_1:26163368-26163387 | Msa0015940:intron | 30.0% |
| ! | GTCTACTAAAACAAGGTATT+AGG | + | chr1_1:26163454-26163473 | Msa0015940:intron | 30.0% |
| TTACTTTCAGGAGATATTCA+TGG | + | chr1_1:26163508-26163527 | Msa0015940:intron | 30.0% | |
| !!! | TTTCCAAACTTTGTTTTCCA+CGG | - | chr1_1:26163618-26163637 | None:intergenic | 30.0% |
| ! | GTAGAAGGAAAAAGTTTTCA+GGG | - | chr1_1:26163675-26163694 | None:intergenic | 30.0% |
| AAGATTATATGTATGCATGG+TGG | + | chr1_1:26163832-26163851 | Msa0015940:CDS | 30.0% | |
| TGTTTCAAACTATGCAATTC+AGG | - | chr1_1:26163865-26163884 | None:intergenic | 30.0% | |
| ! | AACAGATAAGTAATTTGCCA+AGG | + | chr1_1:26163881-26163900 | Msa0015940:CDS | 30.0% |
| ! | GTCTTTTATGTGATCTTTTG+TGG | + | chr1_1:26163926-26163945 | Msa0015940:CDS | 30.0% |
| TAGTAAAGATGTTCATGGTT+GGG | + | chr1_1:26163957-26163976 | Msa0015940:CDS | 30.0% | |
| AGATTCAAGAGTTTCTTCAA+AGG | + | chr1_1:26164022-26164041 | Msa0015940:CDS | 30.0% | |
| AATCAAAATTGAACCCAACA+TGG | - | chr1_1:26164234-26164253 | None:intergenic | 30.0% | |
| !! | ATGTTGGGTTCAATTTTGAT+TGG | + | chr1_1:26164233-26164252 | Msa0015940:intron | 30.0% |
| ! | ATCTTAACTCTTAAGGCATT+AGG | - | chr1_1:26164321-26164340 | None:intergenic | 30.0% |
| ! | TGCCTTAAGAGTTAAGATTT+TGG | + | chr1_1:26164323-26164342 | Msa0015940:intron | 30.0% |
| CTTAGTCCTTGAAAAAAATC+GGG | + | chr1_1:26164454-26164473 | Msa0015940:intron | 30.0% | |
| TATCGTTGAGAAAAAAAACC+AGG | - | chr1_1:26164543-26164562 | None:intergenic | 30.0% | |
| AAAATTAGCGACACCTAATT+TGG | - | chr1_1:26164589-26164608 | None:intergenic | 30.0% | |
| TTTCTATAGGTTGTTGAAGA+TGG | + | chr1_1:26164755-26164774 | Msa0015940:intron | 30.0% | |
| GATCATAAAATGCCTAAGTT+TGG | + | chr1_1:26164914-26164933 | Msa0015940:CDS | 30.0% | |
| !!! | AAATGCCTAAGTTTGGTTTT+AGG | + | chr1_1:26164921-26164940 | Msa0015940:CDS | 30.0% |
| TGCTTAACATTTGCAAATTC+TGG | - | chr1_1:26165004-26165023 | None:intergenic | 30.0% | |
| CGATACTAATCATTAGATGA+TGG | - | chr1_1:26165063-26165082 | None:intergenic | 30.0% | |
| AAAATGACAATGTTAAGGTC+AGG | - | chr1_1:26165269-26165288 | None:intergenic | 30.0% | |
| CATAGTACATAGATTTGAGT+AGG | + | chr1_1:26165504-26165523 | Msa0015940:intron | 30.0% | |
| ! | AGTCAATAGTTTGTCATTCT+TGG | + | chr1_1:26165586-26165605 | Msa0015940:intron | 30.0% |
| ATTCTTGGATTATCCTTAGT+CGG | + | chr1_1:26165601-26165620 | Msa0015940:intron | 30.0% | |
| GTTAAACCTAGATTGAAAAG+AGG | + | chr1_1:26165642-26165661 | Msa0015940:intron | 30.0% | |
| ! | AACTTTCCTCTTTTCAATCT+AGG | - | chr1_1:26165651-26165670 | None:intergenic | 30.0% |
| !!! | TTTTAGAACCCTATTTTCAC+AGG | - | chr1_1:26165687-26165706 | None:intergenic | 30.0% |
| ! | TTTAGATTTTCGGTCCATTA+AGG | - | chr1_1:26165800-26165819 | None:intergenic | 30.0% |
| TTTATGAAAGTGATGTAGGA+AGG | - | chr1_1:26165986-26166005 | None:intergenic | 30.0% | |
| !!! | TATTTTCAGAAGGCATTTCT+TGG | + | chr1_1:26166185-26166204 | Msa0015940:intron | 30.0% |
| CAATGAAACAACTTAATTGC+TGG | + | chr1_1:26166327-26166346 | Msa0015940:three_prime_UTR | 30.0% | |
| ACAACCAGATTTATGAATAG+AGG | - | chr1_1:26166448-26166467 | None:intergenic | 30.0% | |
| TAAATCTGGTTGTATTACTG+TGG | + | chr1_1:26166455-26166474 | Msa0015940:three_prime_UTR | 30.0% | |
| CTTTCTTGATTATGGAACGA+AGG | + | chr1_1:26160769-26160788 | Msa0015940:exon | 35.0% | |
| AATAGGTTGCTTGATGTTAG+AGG | + | chr1_1:26160810-26160829 | Msa0015940:CDS | 35.0% | |
| ! | TATGGCCATGTTTTTCTATG+TGG | + | chr1_1:26161033-26161052 | Msa0015940:intron | 35.0% |
| GTTACATTCAAGGGGATATA+AGG | + | chr1_1:26161091-26161110 | Msa0015940:intron | 35.0% | |
| !! | TGTGCAAATTTGCTAAGAGT+GGG | - | chr1_1:26161177-26161196 | None:intergenic | 35.0% |
| !! | ATGTGCAAATTTGCTAAGAG+TGG | - | chr1_1:26161178-26161197 | None:intergenic | 35.0% |
| AACGACTTAGAGAGTTGAAA+TGG | - | chr1_1:26161236-26161255 | None:intergenic | 35.0% | |
| ACCAATCTATATCCACTTTG+TGG | + | chr1_1:26161399-26161418 | Msa0015940:intron | 35.0% | |
| TCCACAAAGTGGATATAGAT+TGG | - | chr1_1:26161403-26161422 | None:intergenic | 35.0% | |
| ATCTATATCCACTTTGTGGA+AGG | + | chr1_1:26161403-26161422 | Msa0015940:intron | 35.0% | |
| TATTCAAAGCTGAACCAAAC+GGG | - | chr1_1:26161599-26161618 | None:intergenic | 35.0% | |
| AAACCTATACACGTTGTTCA+AGG | + | chr1_1:26161871-26161890 | Msa0015940:intron | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | + | chr1_1:26161902-26161921 | Msa0015940:intron | 35.0% |
| AGCTAGGATTTATAGCTTCA+TGG | + | chr1_1:26161918-26161937 | Msa0015940:intron | 35.0% | |
| !! | TGAACCAAACACGTTGTTTT+TGG | + | chr1_1:26161979-26161998 | Msa0015940:intron | 35.0% |
| AAACCTATACACGTTGTTCA+AGG | + | chr1_1:26161871-26161890 | Msa0015940:intron | 35.0% | |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | + | chr1_1:26161902-26161921 | Msa0015940:intron | 35.0% |
| !! | TGAACCAAACACGTTGTTTT+TGG | + | chr1_1:26161979-26161998 | Msa0015940:intron | 35.0% |
| !! | GCACTGTAGAGAATTGATTT+TGG | + | chr1_1:26162017-26162036 | Msa0015940:intron | 35.0% |
| ! | GGCTAATGTTACTGCTATTT+AGG | - | chr1_1:26162573-26162592 | None:intergenic | 35.0% |
| AACGACTTAGAGAGTTGAAA+CGG | - | chr1_1:26161236-26161255 | None:intergenic | 35.0% | |
| GAACATGAATGTTGTTCCAT+AGG | - | chr1_1:26162974-26162993 | None:intergenic | 35.0% | |
| GATTATGTCTAATGAGGTGT+CGG | - | chr1_1:26163290-26163309 | None:intergenic | 35.0% | |
| ! | TCAAAACTAAGACTCTGAGA+AGG | - | chr1_1:26163346-26163365 | None:intergenic | 35.0% |
| CATGCTCAAATAGGCTTAAT+AGG | - | chr1_1:26163546-26163565 | None:intergenic | 35.0% | |
| CTATTAAGCCTATTTGAGCA+TGG | + | chr1_1:26163544-26163563 | Msa0015940:CDS | 35.0% | |
| ! | CGTAGAAGGAAAAAGTTTTC+AGG | - | chr1_1:26163676-26163695 | None:intergenic | 35.0% |
| !! | GAAAACTTTTTCCTTCTACG+AGG | + | chr1_1:26163676-26163695 | Msa0015940:CDS | 35.0% |
| ! | GATTTATGGAAGCACATTCA+TGG | - | chr1_1:26163705-26163724 | None:intergenic | 35.0% |
| CAAGAGGAGATTCAATGTAA+GGG | + | chr1_1:26163750-26163769 | Msa0015940:CDS | 35.0% | |
| AGATTGTTTCAACTGTTTGC+CGG | + | chr1_1:26163789-26163808 | Msa0015940:CDS | 35.0% | |
| TCACATAAAAGACCAGTTTC+AGG | - | chr1_1:26163919-26163938 | None:intergenic | 35.0% | |
| GATCCTAGTAAAGATGTTCA+TGG | + | chr1_1:26163952-26163971 | Msa0015940:CDS | 35.0% | |
| CAACCATGAACATCTTTACT+AGG | - | chr1_1:26163958-26163977 | None:intergenic | 35.0% | |
| CTAGTAAAGATGTTCATGGT+TGG | + | chr1_1:26163956-26163975 | Msa0015940:CDS | 35.0% | |
| AGTAAAGATGTTCATGGTTG+GGG | + | chr1_1:26163958-26163977 | Msa0015940:CDS | 35.0% | |
| ! | CGTGGTGTTTCATTTACTTT+TGG | + | chr1_1:26163991-26164010 | Msa0015940:CDS | 35.0% |
| ! | ATTTTTCTCAGCGACCAAAT+CGG | - | chr1_1:26164425-26164444 | None:intergenic | 35.0% |
| !!! | TAGTTGCCCGATTTTTTTCA+AGG | - | chr1_1:26164463-26164482 | None:intergenic | 35.0% |
| !!! | TTAGGTGTCGCTAATTTTCT+TGG | + | chr1_1:26164591-26164610 | Msa0015940:intron | 35.0% |
| ! | TTTTCTGCTCCTAATTACTG+TGG | + | chr1_1:26164815-26164834 | Msa0015940:CDS | 35.0% |
| TCAAACTCTCCACAGTAATT+AGG | - | chr1_1:26164827-26164846 | None:intergenic | 35.0% | |
| ! | TTAGGCATTTTATGATCCAC+AGG | - | chr1_1:26164911-26164930 | None:intergenic | 35.0% |
| CCTTGCAAAACTCATCATTT+AGG | - | chr1_1:26165227-26165246 | None:intergenic | 35.0% | |
| ! | CCTAAATGATGAGTTTTGCA+AGG | + | chr1_1:26165224-26165243 | Msa0015940:intron | 35.0% |
| ! | AAATGATGAGTTTTGCAAGG+AGG | + | chr1_1:26165227-26165246 | Msa0015940:intron | 35.0% |
| TGAATGAAAAGATGTCTCTC+TGG | + | chr1_1:26165743-26165762 | Msa0015940:intron | 35.0% | |
| GACTGTAAGATGACTAAAGT+TGG | + | chr1_1:26166233-26166252 | Msa0015940:three_prime_UTR | 35.0% | |
| CTTTGTTCACTACAATGTGA+AGG | + | chr1_1:26166290-26166309 | Msa0015940:three_prime_UTR | 35.0% | |
| !! | AATTGCTGGCTCAATACAAA+TGG | + | chr1_1:26166341-26166360 | Msa0015940:three_prime_UTR | 35.0% |
| !! | TATGAATAGAGGAAGCACTA+GGG | - | chr1_1:26166437-26166456 | None:intergenic | 35.0% |
| !! | TTATGAATAGAGGAAGCACT+AGG | - | chr1_1:26166438-26166457 | None:intergenic | 35.0% |
| GCTTCCTCTATTCATAAATC+TGG | + | chr1_1:26166441-26166460 | Msa0015940:three_prime_UTR | 35.0% | |
| TTGATGTTAGAGGAAGACCT+GGG | + | chr1_1:26160820-26160839 | Msa0015940:CDS | 40.0% | |
| AAACAGGTTCAGCTTTCAGA+GGG | + | chr1_1:26160843-26160862 | Msa0015940:CDS | 40.0% | |
| ! | AGAAATCAAGCAGCTTTGTG+TGG | + | chr1_1:26160866-26160885 | Msa0015940:CDS | 40.0% |
| ! | CTTGAAGCAGCCTAATTTGT+TGG | + | chr1_1:26160905-26160924 | Msa0015940:CDS | 40.0% |
| !! | GCCTAATTTGTTGGAACTTG+AGG | + | chr1_1:26160914-26160933 | Msa0015940:CDS | 40.0% |
| GCCTCAAGTTCCAACAAATT+AGG | - | chr1_1:26160918-26160937 | None:intergenic | 40.0% | |
| ! | GAGGCACCAATTAAGATATG+TGG | + | chr1_1:26160933-26160952 | Msa0015940:CDS | 40.0% |
| CATTCAAGGGGATATAAGGT+TGG | + | chr1_1:26161095-26161114 | Msa0015940:intron | 40.0% | |
| ! | AAGGGGATATAAGGTTGGTT+TGG | + | chr1_1:26161100-26161119 | Msa0015940:intron | 40.0% |
| TTGTGTGTGCAAGTTTACGA+GGG | + | chr1_1:26161123-26161142 | Msa0015940:intron | 40.0% | |
| TTACGAGGGTAGTGATAAGA+TGG | + | chr1_1:26161137-26161156 | Msa0015940:intron | 40.0% | |
| !! | GTGCAAATTTGCTAAGAGTG+GGG | - | chr1_1:26161176-26161195 | None:intergenic | 40.0% |
| GCAATTGCTCGTACTATGTT+GGG | - | chr1_1:26161293-26161312 | None:intergenic | 40.0% | |
| AAATTCATCAAGTGCCCGTT+TGG | + | chr1_1:26161582-26161601 | Msa0015940:intron | 40.0% | |
| TCTCCTTGAACAACGTGTAT+AGG | - | chr1_1:26161877-26161896 | None:intergenic | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | chr1_1:26161932-26161951 | Msa0015940:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | chr1_1:26161935-26161954 | Msa0015940:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | - | chr1_1:26161986-26162005 | None:intergenic | 40.0% | |
| ! | CTAGAATTGCTTCTGAGAAG+TGG | + | chr1_1:26162041-26162060 | Msa0015940:intron | 40.0% |
| CAAACGGATGTTAAAGACAG+GGG | - | chr1_1:26162078-26162097 | None:intergenic | 40.0% | |
| CCAAACGGATGTTAAAGACA+GGG | - | chr1_1:26162079-26162098 | None:intergenic | 40.0% | |
| ACCAAACGGATGTTAAAGAC+AGG | - | chr1_1:26162080-26162099 | None:intergenic | 40.0% | |
| TCTCCTTGAACAACGTGTAT+AGG | - | chr1_1:26161877-26161896 | None:intergenic | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | + | chr1_1:26162412-26162431 | Msa0015940:intron | 40.0% | |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | chr1_1:26161932-26161951 | Msa0015940:intron | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | chr1_1:26161935-26161954 | Msa0015940:intron | 40.0% |
| CTAGCCAAAAACAACGTGTT+TGG | - | chr1_1:26161986-26162005 | None:intergenic | 40.0% | |
| ! | TATTTAGGGCCTGTATGGTT+TGG | - | chr1_1:26162558-26162577 | None:intergenic | 40.0% |
| !! | TTTTCAGAAGCACGGTTTGT+TGG | + | chr1_1:26162770-26162789 | Msa0015940:intron | 40.0% |
| GTTTGACCTTGGAACATCAA+GGG | - | chr1_1:26163256-26163275 | None:intergenic | 40.0% | |
| TTAAGCCTATTTGAGCATGG+TGG | + | chr1_1:26163547-26163566 | Msa0015940:CDS | 40.0% | |
| AAGAACAAGTAGTTGGAACG+TGG | - | chr1_1:26163580-26163599 | None:intergenic | 40.0% | |
| CGTTCCAACTACTTGTTCTT+AGG | + | chr1_1:26163580-26163599 | Msa0015940:CDS | 40.0% | |
| GTCACCTAAGAACAAGTAGT+TGG | - | chr1_1:26163587-26163606 | None:intergenic | 40.0% | |
| CTTGTTCTTAGGTGACTATG+TGG | + | chr1_1:26163591-26163610 | Msa0015940:CDS | 40.0% | |
| ATTCATGGTTTCCTCGTAGA+AGG | - | chr1_1:26163690-26163709 | None:intergenic | 40.0% | |
| GCAAGAGGAGATTCAATGTA+AGG | + | chr1_1:26163749-26163768 | Msa0015940:CDS | 40.0% | |
| GGAGATTCAATGTAAGGGTA+TGG | + | chr1_1:26163755-26163774 | Msa0015940:CDS | 40.0% | |
| !! | CTTGATTTGTAGAGCTCATC+AGG | + | chr1_1:26164056-26164075 | Msa0015940:CDS | 40.0% |
| GTTCAGATCTCTTGTGGAAT+CGG | + | chr1_1:26164349-26164368 | Msa0015940:intron | 40.0% | |
| ATTGACCAAGAGAATGTTGG+AGG | - | chr1_1:26164393-26164412 | None:intergenic | 40.0% | |
| TGGATTGACCAAGAGAATGT+TGG | - | chr1_1:26164396-26164415 | None:intergenic | 40.0% | |
| ! | TTTTTCTCAGCGACCAAATC+GGG | - | chr1_1:26164424-26164443 | None:intergenic | 40.0% |
| GTGCTCCTAAAACCAAACTT+AGG | - | chr1_1:26164929-26164948 | None:intergenic | 40.0% | |
| ! | TAGGAGCACAACTTCATTCA+AGG | + | chr1_1:26164940-26164959 | Msa0015940:CDS | 40.0% |
| GGTACAAGAAACAAAGAGAC+AGG | + | chr1_1:26165525-26165544 | Msa0015940:intron | 40.0% | |
| ! | TTATCCTTAGTCGGAAGCAT+AGG | + | chr1_1:26165610-26165629 | Msa0015940:intron | 40.0% |
| TGAAGTGACGCATAAGAAAG+AGG | - | chr1_1:26165943-26165962 | None:intergenic | 40.0% | |
| TGAAAGTGATGTAGGAAGGT+TGG | - | chr1_1:26165982-26166001 | None:intergenic | 40.0% | |
| GTATTACTGTGGCAGCATTT+CGG | + | chr1_1:26166466-26166485 | Msa0015940:three_prime_UTR | 40.0% | |
| ATGGAACGAAGGGTTCTTGA+TGG | + | chr1_1:26160780-26160799 | Msa0015940:CDS | 45.0% | |
| CTTGATGTTAGAGGAAGACC+TGG | + | chr1_1:26160819-26160838 | Msa0015940:CDS | 45.0% | |
| GAAACAGGTTCAGCTTTCAG+AGG | + | chr1_1:26160842-26160861 | Msa0015940:CDS | 45.0% | |
| GTTGTGTGTGCAAGTTTACG+AGG | + | chr1_1:26161122-26161141 | Msa0015940:intron | 45.0% | |
| GAGGGTAGTGATAAGATGGT+CGG | + | chr1_1:26161141-26161160 | Msa0015940:intron | 45.0% | |
| AGGGTAGTGATAAGATGGTC+GGG | + | chr1_1:26161142-26161161 | Msa0015940:intron | 45.0% | |
| GGCAATTGCTCGTACTATGT+TGG | - | chr1_1:26161294-26161313 | None:intergenic | 45.0% | |
| TATCCACTTTGTGGAAGGCT+TGG | + | chr1_1:26161408-26161427 | Msa0015940:intron | 45.0% | |
| TTACCAAGCCTTCCACAAAG+TGG | - | chr1_1:26161414-26161433 | None:intergenic | 45.0% | |
| TCTGAGAAGTGGAACCAAAC+AGG | + | chr1_1:26162052-26162071 | Msa0015940:intron | 45.0% | |
| CCCTGTCTTTAACATCCGTT+TGG | + | chr1_1:26162076-26162095 | Msa0015940:intron | 45.0% | |
| TCTCAGAAGCCAAACCATAC+AGG | + | chr1_1:26162546-26162565 | Msa0015940:intron | 45.0% | |
| ! | ACTGCTATTTAGGGCCTGTA+TGG | - | chr1_1:26162563-26162582 | None:intergenic | 45.0% |
| TGGTTACTCTCTGTTGCTAC+TGG | + | chr1_1:26162875-26162894 | Msa0015940:intron | 45.0% | |
| ! | TCTCTGTTGCTACTGGTTAG+TGG | + | chr1_1:26162882-26162901 | Msa0015940:intron | 45.0% |
| CTTTGTCCCTTGATGTTCCA+AGG | + | chr1_1:26163247-26163266 | Msa0015940:intron | 45.0% | |
| GGTTTGACCTTGGAACATCA+AGG | - | chr1_1:26163257-26163276 | None:intergenic | 45.0% | |
| GGAATCCACCATGCTCAAAT+AGG | - | chr1_1:26163555-26163574 | None:intergenic | 45.0% | |
| ACAAGTAGTTGGAACGTGGA+GGG | - | chr1_1:26163576-26163595 | None:intergenic | 45.0% | |
| AACAAGTAGTTGGAACGTGG+AGG | - | chr1_1:26163577-26163596 | None:intergenic | 45.0% | |
| GGACCGTGGAAAACAAAGTT+TGG | + | chr1_1:26163612-26163631 | Msa0015940:CDS | 45.0% | |
| GCTTCCATAAATCGCGTCTA+CGG | + | chr1_1:26163712-26163731 | Msa0015940:CDS | 45.0% | |
| GAATCCGTAGACGCGATTTA+TGG | - | chr1_1:26163719-26163738 | None:intergenic | 45.0% | |
| GATTCTACGACGAATGCAAG+AGG | + | chr1_1:26163734-26163753 | Msa0015940:CDS | 45.0% | |
| CCAGTTTCAGGAACTTCACT+TGG | - | chr1_1:26163907-26163926 | None:intergenic | 45.0% | |
| CCAAGTGAAGTTCCTGAAAC+TGG | + | chr1_1:26163904-26163923 | Msa0015940:CDS | 45.0% | |
| ACCCAATTTCGAGACCATGT+TGG | + | chr1_1:26164217-26164236 | Msa0015940:intron | 45.0% | |
| CCCAACATGGTCTCGAAATT+GGG | - | chr1_1:26164221-26164240 | None:intergenic | 45.0% | |
| CCCAATTTCGAGACCATGTT+GGG | + | chr1_1:26164218-26164237 | Msa0015940:intron | 45.0% | |
| ACCCAACATGGTCTCGAAAT+TGG | - | chr1_1:26164222-26164241 | None:intergenic | 45.0% | |
| TGGATGGTTCAGATCTCTTG+TGG | + | chr1_1:26164343-26164362 | Msa0015940:intron | 45.0% | |
| CTCTTGTGGAATCGGATCAT+TGG | + | chr1_1:26164357-26164376 | Msa0015940:intron | 45.0% | |
| TGTTGCCTCCAACATTCTCT+TGG | + | chr1_1:26164385-26164404 | Msa0015940:intron | 45.0% | |
| TCAATCCAACAGACCCGATT+TGG | + | chr1_1:26164408-26164427 | Msa0015940:intron | 45.0% | |
| TGTCTACTCTATAGGCCTCA+AGG | + | chr1_1:26164507-26164526 | Msa0015940:intron | 45.0% | |
| CCAGGAAAACTTCATCCTTG+AGG | - | chr1_1:26164525-26164544 | None:intergenic | 45.0% | |
| ! | CCTCAAGGATGAAGTTTTCC+TGG | + | chr1_1:26164522-26164541 | Msa0015940:intron | 45.0% |
| TGTGGAGAGTTTGACAATGC+TGG | + | chr1_1:26164833-26164852 | Msa0015940:CDS | 45.0% | |
| GTGGAGAGTTTGACAATGCT+GGG | + | chr1_1:26164834-26164853 | Msa0015940:CDS | 45.0% | |
| TGGAGAGTTTGACAATGCTG+GGG | + | chr1_1:26164835-26164854 | Msa0015940:CDS | 45.0% | |
| GCAAGGAGGATTACTCTCAT+TGG | + | chr1_1:26165241-26165260 | Msa0015940:intron | 45.0% | |
| CTAACCTATGCTTCCGACTA+AGG | - | chr1_1:26165617-26165636 | None:intergenic | 45.0% | |
| AGCGCGAAACCTGTGAAAAT+AGG | + | chr1_1:26165675-26165694 | Msa0015940:intron | 45.0% | |
| GCGCGAAACCTGTGAAAATA+GGG | + | chr1_1:26165676-26165695 | Msa0015940:intron | 45.0% | |
| !! | TGCTGGCTCAATACAAATGG+AGG | + | chr1_1:26166344-26166363 | Msa0015940:three_prime_UTR | 45.0% |
| ! | GCTGGCTCAATACAAATGGA+GGG | + | chr1_1:26166345-26166364 | Msa0015940:three_prime_UTR | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+AGG | + | chr1_1:26162932-26162951 | Msa0015940:intron | 5.0% |
| !!! | TAAATCATTAATTATATTTT+TGG | - | chr1_1:26163080-26163099 | None:intergenic | 5.0% |
| TAGAGGAAGACCTGGGAAAC+AGG | + | chr1_1:26160827-26160846 | Msa0015940:CDS | 50.0% | |
| GAAAGCTGAACCTGTTTCCC+AGG | - | chr1_1:26160840-26160859 | None:intergenic | 50.0% | |
| GGGTAGTGATAAGATGGTCG+GGG | + | chr1_1:26161143-26161162 | Msa0015940:intron | 50.0% | |
| GTTAAAGACAGGGGCCTGTT+TGG | - | chr1_1:26162069-26162088 | None:intergenic | 50.0% | |
| !! | CTCGGTGTTAGGTTTGACCT+TGG | - | chr1_1:26163267-26163286 | None:intergenic | 50.0% |
| !! | TGTCTAATGAGGTGTCGGCT+CGG | - | chr1_1:26163285-26163304 | None:intergenic | 50.0% |
| TTAGGTGACTATGTGGACCG+TGG | + | chr1_1:26163598-26163617 | Msa0015940:CDS | 50.0% | |
| TTTCAACTGTTTGCCGGTCG+CGG | + | chr1_1:26163795-26163814 | Msa0015940:CDS | 50.0% | |
| TCAGGAACTTCACTTGGCCT+TGG | - | chr1_1:26163901-26163920 | None:intergenic | 50.0% | |
| ! | GGTTGGGGTGTTAATGAACG+TGG | + | chr1_1:26163973-26163992 | Msa0015940:CDS | 50.0% |
| GTACGAGCAATTGCCCAGCT+AGG | + | chr1_1:26161299-26161318 | Msa0015940:intron | 55.0% | |
| TCATCGATGATAGCCGCGAC+CGG | - | chr1_1:26163811-26163830 | None:intergenic | 55.0% | |
| AGCGACCAAATCGGGTCTGT+TGG | - | chr1_1:26164416-26164435 | None:intergenic | 55.0% | |
| CGCTCGAGCATAGCCTAGCT+GGG | - | chr1_1:26161315-26161334 | None:intergenic | 60.0% | |
| ACGCTCGAGCATAGCCTAGC+TGG | - | chr1_1:26161316-26161335 | None:intergenic | 60.0% | |
| !! | TGAGGTGTCGGCTCGGTGTT+AGG | - | chr1_1:26163278-26163297 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26160640 | 26166556 | 26160640 | ID=Msa0015940;Name=Msa0015940 |
| chr1_1 | mRNA | 26160640 | 26166556 | 26160640 | ID=Msa0015940-mRNA-1;Parent=Msa0015940;Name=Msa0015940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=140|1|1|1|1|1|4|327|322 |
| chr1_1 | exon | 26160640 | 26160954 | 26160640 | ID=Msa0015940-mRNA-1:exon:8903;Parent=Msa0015940-mRNA-1 |
| chr1_1 | exon | 26163518 | 26164077 | 26163518 | ID=Msa0015940-mRNA-1:exon:8904;Parent=Msa0015940-mRNA-1 |
| chr1_1 | exon | 26164764 | 26164961 | 26164764 | ID=Msa0015940-mRNA-1:exon:8905;Parent=Msa0015940-mRNA-1 |
| chr1_1 | exon | 26166194 | 26166556 | 26166194 | ID=Msa0015940-mRNA-1:exon:8906;Parent=Msa0015940-mRNA-1 |
| chr1_1 | five_prime_UTR | 26160640 | 26160779 | 26160640 | ID=Msa0015940-mRNA-1:five_prime_utr;Parent=Msa0015940-mRNA-1 |
| chr1_1 | CDS | 26160780 | 26160954 | 26160780 | ID=Msa0015940-mRNA-1:cds;Parent=Msa0015940-mRNA-1 |
| chr1_1 | CDS | 26163518 | 26164077 | 26163518 | ID=Msa0015940-mRNA-1:cds;Parent=Msa0015940-mRNA-1 |
| chr1_1 | CDS | 26164764 | 26164961 | 26164764 | ID=Msa0015940-mRNA-1:cds;Parent=Msa0015940-mRNA-1 |
| chr1_1 | CDS | 26166194 | 26166229 | 26166194 | ID=Msa0015940-mRNA-1:cds;Parent=Msa0015940-mRNA-1 |
| chr1_1 | three_prime_UTR | 26166230 | 26166556 | 26166230 | ID=Msa0015940-mRNA-1:three_prime_utr;Parent=Msa0015940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
