AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156860 MtrunA17_Chr2g0287651 41.470 721 388 12 13 722 47 744 0.0 560
Msa0156860 MtrunA17_Chr1g0203051 34.116 554 355 4 43 590 72 621 4.45e-114 364
Msa0156860 MtrunA17_Chr5g0448761 32.923 568 365 8 52 605 62 627 4.06e-95 318
Msa0156860 MtrunA17_Chr1g0202341 32.653 588 368 13 49 618 50 627 1.74e-93 311
Msa0156860 MtrunA17_Chr2g0296781 31.429 665 420 16 54 696 1 651 7.27e-88 296
Msa0156860 MtrunA17_Chr3g0082121 31.351 555 359 7 54 600 47 587 7.60e-86 290
Msa0156860 MtrunA17_Chr8g0363841 29.009 555 385 6 57 603 24 577 2.27e-85 288
Msa0156860 MtrunA17_Chr2g0324011 29.210 582 377 7 53 614 13 579 1.67e-84 283
Msa0156860 MtrunA17_Chr5g0441581 28.936 667 412 14 53 692 35 666 4.61e-83 283
Msa0156860 MtrunA17_Chr1g0198761 29.226 698 448 16 56 723 53 734 2.15e-80 277
Msa0156860 MtrunA17_Chr6g0477261 31.499 527 333 9 190 696 22 540 9.79e-77 264
Msa0156860 MtrunA17_Chr1g0207551 30.645 558 375 8 53 603 37 589 1.78e-76 267
Msa0156860 MtrunA17_Chr6g0458391 28.819 576 365 12 42 600 215 762 5.00e-76 265
Msa0156860 MtrunA17_Chr6g0458391 36.522 115 71 2 53 166 94 207 1.80e-14 78.2
Msa0156860 MtrunA17_Chr1g0203721 29.655 580 391 11 56 623 69 643 7.13e-74 261
Msa0156860 MtrunA17_Chr2g0329031 29.772 571 367 14 43 599 7 557 3.71e-72 253
Msa0156860 MtrunA17_Chr3g0080351 28.385 613 376 12 51 640 77 649 1.19e-71 254
Msa0156860 MtrunA17_Chr2g0276841 27.957 558 382 11 56 600 76 626 3.20e-68 241
Msa0156860 MtrunA17_Chr5g0448511 31.218 394 264 3 216 603 5 397 4.01e-65 229
Msa0156860 MtrunA17_Chr1g0196541 29.585 578 359 14 54 604 1 557 7.24e-65 233
Msa0156860 MtrunA17_Chr5g0440451 26.241 705 448 18 16 684 19 687 1.12e-63 232
Msa0156860 MtrunA17_Chr3g0118611 29.978 447 292 8 218 656 113 546 8.38e-63 228
Msa0156860 MtrunA17_Chr2g0291591 29.839 496 327 10 29 511 40 527 1.59e-61 219
Msa0156860 MtrunA17_Chr2g0291581 27.846 571 371 11 53 604 74 622 4.52e-61 221
Msa0156860 MtrunA17_Chr2g0290391 26.167 600 397 16 28 600 30 610 1.02e-60 220
Msa0156860 MtrunA17_Chr2g0294841 28.546 571 362 14 56 598 51 603 1.43e-60 221
Msa0156860 MtrunA17_Chr5g0431001 29.841 439 280 8 43 457 50 484 2.92e-59 211
Msa0156860 MtrunA17_Chr2g0287061 26.537 618 393 16 55 658 188 758 6.51e-59 216
Msa0156860 MtrunA17_Chr1g0164591 32.353 306 191 4 137 436 12 307 4.18e-52 186
Msa0156860 MtrunA17_Chr7g0258861 33.677 291 179 5 47 327 4 290 1.40e-42 157
Msa0156860 MtrunA17_Chr2g0308841 33.188 229 152 1 381 608 4 232 4.56e-39 146
Msa0156860 MtrunA17_Chr1g0149131 33.636 110 68 1 328 432 1 110 4.37e-14 69.7
Msa0156860 MtrunA17_Chr8g0340801 33.028 109 71 1 158 266 1 107 2.53e-13 67.0
Msa0156860 MtrunA17_Chr1g0171741 30.645 124 78 2 51 169 134 254 1.06e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156860 AT4G38180.1 31.802 566 372 7 53 607 76 638 3.73e-93 313
Msa0156860 AT4G15090.1 29.403 670 439 11 19 676 34 681 5.34e-87 297
Msa0156860 AT4G15090.5 29.403 670 439 11 19 676 34 681 5.34e-87 297
Msa0156860 AT4G15090.3 29.403 670 439 11 19 676 34 681 5.34e-87 297
Msa0156860 AT4G15090.2 29.403 670 439 11 19 676 34 681 5.34e-87 297
Msa0156860 AT4G15090.4 29.403 670 439 11 19 676 34 681 5.34e-87 297
Msa0156860 AT2G27110.2 28.250 623 402 14 11 617 1 594 3.74e-72 256
Msa0156860 AT2G27110.1 28.250 623 402 14 11 617 1 594 3.74e-72 256
Msa0156860 AT3G22170.2 27.565 653 400 16 11 638 37 641 1.13e-71 254
Msa0156860 AT3G22170.1 27.565 653 400 16 11 638 37 641 1.13e-71 254
Msa0156860 AT1G80010.1 27.116 579 397 12 53 612 98 670 3.77e-66 236
Msa0156860 AT1G10240.2 27.663 582 399 13 56 623 54 627 1.22e-65 234
Msa0156860 AT1G10240.1 27.663 582 399 13 56 623 54 627 1.22e-65 234
Msa0156860 AT1G76320.3 27.046 562 386 10 54 606 1 547 2.87e-65 233
Msa0156860 AT1G76320.2 27.046 562 386 10 54 606 1 547 3.48e-65 234
Msa0156860 AT1G76320.1 27.046 562 386 10 54 606 1 547 4.37e-65 234
Msa0156860 AT1G76320.4 27.046 562 386 10 54 606 1 547 4.37e-65 234
Msa0156860 AT3G06250.2 26.494 619 392 13 53 658 193 761 7.18e-64 231
Msa0156860 AT3G06250.1 26.494 619 392 13 53 658 193 761 7.18e-64 231
Msa0156860 AT3G06250.3 26.494 619 392 13 53 658 193 761 7.18e-64 231
Msa0156860 AT1G52520.1 28.618 615 390 17 23 608 49 643 1.01e-63 229
Msa0156860 AT4G19990.3 28.227 581 346 14 55 607 26 563 7.73e-62 224
Msa0156860 AT4G19990.4 28.227 581 346 14 55 607 26 563 7.73e-62 224
Msa0156860 AT4G19990.5 28.227 581 346 14 55 607 26 563 7.84e-62 224
Msa0156860 AT4G19990.6 28.227 581 346 14 55 607 26 563 1.06e-61 224
Msa0156860 AT4G19990.2 28.227 581 346 14 55 607 26 563 1.06e-61 224
Msa0156860 AT4G19990.7 28.227 581 346 14 55 607 40 577 1.22e-61 224
Msa0156860 AT2G27110.3 31.204 407 270 6 218 617 46 449 8.39e-61 221
Msa0156860 AT5G28530.1 27.368 570 377 14 56 600 61 618 1.94e-60 219
Msa0156860 AT5G18960.2 25.701 642 419 14 29 658 190 785 5.39e-60 220
Msa0156860 AT5G18960.1 25.701 642 419 14 29 658 190 785 5.39e-60 220
Msa0156860 AT5G28530.3 27.368 570 373 15 56 600 61 614 6.84e-60 218
Msa0156860 AT5G28530.2 27.368 570 373 15 56 600 61 614 6.84e-60 218
Msa0156860 AT2G32250.5 27.113 568 354 10 42 600 34 550 1.47e-58 215
Msa0156860 AT2G32250.2 27.113 568 354 10 42 600 34 550 1.56e-58 216
Msa0156860 AT2G32250.4 27.113 568 354 10 42 600 34 550 1.56e-58 216
Msa0156860 AT2G32250.6 27.113 568 354 10 42 600 34 550 1.86e-58 216
Msa0156860 AT2G32250.1 27.113 568 354 10 42 600 34 550 1.86e-58 216
Msa0156860 AT2G32250.3 27.113 568 354 10 42 600 34 550 1.86e-58 216
Msa0156860 AT2G32250.8 27.158 556 349 9 54 600 1 509 3.34e-58 214
Msa0156860 AT2G32250.7 27.158 556 349 9 54 600 1 509 4.35e-58 214
Msa0156860 AT4G19990.1 31.671 401 259 9 218 607 110 506 6.83e-57 209
Msa0156860 AT4G38170.1 29.494 356 243 4 255 603 45 399 6.00e-54 197
Msa0156860 AT5G28530.4 24.599 561 341 18 56 600 61 555 4.81e-41 161
Msa0156860 AT5G28530.5 24.599 561 337 19 56 600 61 551 1.85e-40 159
Msa0156860 AT3G07500.1 32.335 167 97 6 53 213 36 192 2.06e-12 68.2

Find 168 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGGTTAGAAAATATATTT+TGG 0.123717 1_4:+23575425 Msa0156860:CDS
CCTTTGGGTTTAGCATTATC+TGG 0.190370 1_4:-23576720 None:intergenic
TCAATATTAACTGTAATATT+TGG 0.204657 1_4:-23577304 None:intergenic
TTCATTTCATTCCGAATTAT+AGG 0.217986 1_4:+23575140 Msa0156860:CDS
TTCCTCATTATGACCTTCTT+TGG 0.219846 1_4:-23576508 None:intergenic
GTTGAACTCTTCTAAGAATC+TGG 0.237622 1_4:-23575797 None:intergenic
ATGATTTCATTCAGAAGATT+TGG 0.259205 1_4:+23575062 Msa0156860:CDS
AATGTCTATATTTGTTGTTT+TGG 0.267598 1_4:-23577257 None:intergenic
TCATATACTAGGTTTCTTAA+TGG 0.276146 1_4:+23575225 Msa0156860:CDS
TTCAGTAGTGATAATGGTTT+TGG 0.283086 1_4:+23574731 Msa0156860:CDS
CATGATGTTGATAATATCTT+TGG 0.283165 1_4:+23577172 Msa0156860:CDS
AGAAGAATGAAGATAGTAAT+AGG 0.287511 1_4:+23574996 Msa0156860:CDS
AGGCTTGATTATGAATGTTT+TGG 0.312628 1_4:+23575463 Msa0156860:CDS
GGAATGAAATGAACAAGATT+TGG 0.316166 1_4:-23575130 None:intergenic
TCACTCAATTTCCTATAATT+CGG 0.322105 1_4:-23575151 None:intergenic
CAAGGCATCGCCTTTGTTCA+TGG 0.324273 1_4:+23575737 Msa0156860:CDS
CATATACTAGGTTTCTTAAT+GGG 0.328869 1_4:+23575226 Msa0156860:CDS
CACTCAGACTCAAATTGTTC+AGG 0.330330 1_4:-23575844 None:intergenic
GGTTTCTTAATGGGCCAAAA+AGG 0.332076 1_4:+23575235 Msa0156860:CDS
GTAGAATTCAGTAGTGATAA+TGG 0.335573 1_4:+23574725 Msa0156860:CDS
CCATCGGTAACAATCGCTTT+TGG 0.342091 1_4:-23575670 None:intergenic
GACGTTGTTCTCGTTGTAAA+AGG 0.344539 1_4:+23576793 Msa0156860:CDS
AGATGAGGAGGAGGAGGAAA+AGG 0.348541 1_4:+23576872 Msa0156860:CDS
AGAGGAGGAGGTGGAGGAGG+AGG 0.354178 1_4:+23576956 Msa0156860:CDS
TGCAGAGGAGGAGGTGGAGG+AGG 0.357989 1_4:+23576953 Msa0156860:CDS
ACTTAGTTCATGGTTGTGAT+TGG 0.360489 1_4:-23575104 None:intergenic
GAAGTTAATCCACCCACATT+TGG 0.365859 1_4:-23577522 None:intergenic
CACTTACCGCTGCATTCAAT+AGG 0.379313 1_4:+23576556 Msa0156860:CDS
CTTAGTTCATGGTTGTGATT+GGG 0.381070 1_4:-23575103 None:intergenic
GAGTTTACCTTTACAGATGA+TGG 0.397514 1_4:+23575403 Msa0156860:CDS
AAGGTGTGAATTCATTTATC+AGG 0.398443 1_4:+23576001 Msa0156860:CDS
TAACAATGCCATTGATTATG+AGG 0.400069 1_4:+23576596 Msa0156860:CDS
AAAGTTCCTAGAAGTCAAAA+AGG 0.400507 1_4:+23576200 Msa0156860:CDS
GAGATGTATTTCCGAATTCA+AGG 0.401974 1_4:+23575719 Msa0156860:CDS
CAAAGGCGATGCCTTGAATT+CGG 0.402388 1_4:-23575730 None:intergenic
GTGTTGACAACTTCCTTGCC+TGG 0.404467 1_4:+23576141 Msa0156860:CDS
TTCTAACTCCACACACAAAA+TGG 0.405607 1_4:-23575963 None:intergenic
CATTTGGTACTGACATAGAA+TGG 0.405927 1_4:-23577144 None:intergenic
CTACAGACATAATGAATTGT+TGG 0.407345 1_4:+23576089 Msa0156860:CDS
AATCTTCTGAATGAAATCAT+AGG 0.410758 1_4:-23575059 None:intergenic
AAAGGAGGACATGAAAATCT+TGG 0.412933 1_4:+23575253 Msa0156860:CDS
AAATGTCAATGGCAACAATA+AGG 0.413929 1_4:+23576674 Msa0156860:CDS
GATTTGGAGGACTTAGTTCA+TGG 0.422475 1_4:-23575114 None:intergenic
AACAACATTCCTTTGTATCC+TGG 0.428695 1_4:+23577585 Msa0156860:CDS
TCGGATAAACAGATTGTTAG+TGG 0.430560 1_4:+23575175 Msa0156860:CDS
TAACATACACTATTTGTTCC+AGG 0.434470 1_4:-23577603 None:intergenic
AAAGCGTATGCTCGTTTCCA+TGG 0.435800 1_4:+23574872 Msa0156860:CDS
AGAAAGTGTCCAATACTTGC+TGG 0.436958 1_4:+23576831 Msa0156860:CDS
CAAGGAAGGGTTAGAATTGA+AGG 0.441504 1_4:+23575313 Msa0156860:CDS
AGATGCAGAGGAGGAGGTGG+AGG 0.441546 1_4:+23576950 Msa0156860:CDS
TCAACATCATGTCTACCATT+TGG 0.448971 1_4:-23577160 None:intergenic
CAAAGATGCAGAGGAGGAGG+TGG 0.449261 1_4:+23576947 Msa0156860:CDS
CATTGATTATGAGGAAGCTT+TGG 0.458582 1_4:+23576605 Msa0156860:CDS
CTCATTATGACCTTCTTTGG+AGG 0.460106 1_4:-23576505 None:intergenic
AATAGGCAAACCATGCGAAC+TGG 0.460478 1_4:+23575013 Msa0156860:CDS
AAAGTCTAATTTGCAAAAGA+TGG 0.463829 1_4:+23576445 Msa0156860:CDS
TTGAACTCTTCTAAGAATCT+GGG 0.470760 1_4:-23575796 None:intergenic
AAGGTCAATAAATCTGTTGT+TGG 0.472287 1_4:+23576693 Msa0156860:CDS
GTTAGTGGTTTGCATTCTCA+AGG 0.476835 1_4:+23575190 Msa0156860:CDS
ATGCTGAGTTGCTTCACTAT+AGG 0.481546 1_4:-23574681 None:intergenic
GCGATTACTTTGCAATAAAG+AGG 0.481547 1_4:+23574952 Msa0156860:CDS
CATATAAATTGAAGCAAATG+TGG 0.481645 1_4:+23575920 Msa0156860:CDS
GTTTCCATGGGTTTGTCGTA+AGG 0.482758 1_4:+23574885 Msa0156860:CDS
CCTCATTGATTTATCTCCAT+CGG 0.483957 1_4:-23575686 None:intergenic
GGGTTTCATCATTCATGTCA+TGG 0.487067 1_4:-23577123 None:intergenic
AGAAGATGAGAAGGAGAAAG+AGG 0.487385 1_4:+23576902 Msa0156860:CDS
GGACAAAGATGCAGAGGAGG+AGG 0.487775 1_4:+23576944 Msa0156860:CDS
GGATAAAGAAGAAGATGAGA+AGG 0.488336 1_4:+23576893 Msa0156860:CDS
ATGGTGTATCAAAGAATAAG+TGG 0.488352 1_4:+23575887 Msa0156860:CDS
ATTTGGTACTGACATAGAAT+GGG 0.493491 1_4:-23577143 None:intergenic
ACATCAATTCCAGCAAGTAT+TGG 0.494203 1_4:-23576840 None:intergenic
CAAAGCTTCCTCATAATCAA+TGG 0.494233 1_4:-23576604 None:intergenic
GAAGCTTCACGCTCAAATCC+AGG 0.499670 1_4:-23576159 None:intergenic
TCATCATTTGCCTCCAAAGA+AGG 0.501389 1_4:+23576495 Msa0156860:CDS
CAAGATGGAACCATGGTGTT+GGG 0.503043 1_4:+23577454 Msa0156860:CDS
GAAGGAGAAAGAGGATGAGA+AGG 0.514047 1_4:+23576911 Msa0156860:CDS
AAATGATGATATAAAAGCTA+TGG 0.514775 1_4:+23574814 Msa0156860:CDS
GTCACTCACCATGCTGAGGT+TGG 0.515437 1_4:+23576249 Msa0156860:CDS
TTATAGGAAATTGAGTGAAT+CGG 0.515530 1_4:+23575156 Msa0156860:CDS
AAGGAAGGATGATGTGGTAA+AGG 0.518755 1_4:+23574904 Msa0156860:CDS
AAGAGAGTTGTTGACAGTTA+TGG 0.523339 1_4:+23575868 Msa0156860:CDS
CCATGGGTTTGTCGTAAGGA+AGG 0.524385 1_4:+23574889 Msa0156860:CDS
CGTCGTGAGGGAAATGTCAA+TGG 0.525065 1_4:+23576663 Msa0156860:CDS
TGCCACATGGATTTGCAAGA+TGG 0.527779 1_4:+23577439 Msa0156860:CDS
GTAAGAACCTGTCATATACT+AGG 0.532163 1_4:+23575214 Msa0156860:CDS
GATTATGAGGAAGCTTTGGA+AGG 0.532969 1_4:+23576609 Msa0156860:CDS
TAACCGACCATCATCTGTAA+AGG 0.533842 1_4:-23575410 None:intergenic
AAATGGTCATGTTCCGCCGA+TGG 0.535969 1_4:+23576532 Msa0156860:CDS
ATGAAATGAACAAGATTTGG+AGG 0.540633 1_4:-23575127 None:intergenic
AATGGTCATGTTCCGCCGAT+GGG 0.542538 1_4:+23576533 Msa0156860:CDS
AAGCGTATGCTCGTTTCCAT+GGG 0.546934 1_4:+23574873 Msa0156860:CDS
TTTGGGCAGATTCTGCAAGC+AGG 0.547459 1_4:+23575443 Msa0156860:CDS
ACTTCATGACAGAAATAATG+TGG 0.547790 1_4:-23576398 None:intergenic
CCACCGTACACAGGAAAAGC+GGG 0.548539 1_4:-23577495 None:intergenic
TAAGAAACCTAGTATATGAC+AGG 0.549198 1_4:-23575221 None:intergenic
CATTCTATGTCAGTACCAAA+TGG 0.549713 1_4:+23577145 Msa0156860:CDS
CACATTTGTAGATGAGGAGG+AGG 0.551676 1_4:+23576863 Msa0156860:CDS
ATTTGTAGATGAGGAGGAGG+AGG 0.553398 1_4:+23576866 Msa0156860:CDS
TGATGTCACATTTGTAGATG+AGG 0.555230 1_4:+23576857 Msa0156860:CDS
GGTATTAAACGTAAGAGAGA+TGG 0.556812 1_4:+23577193 Msa0156860:CDS
AAGAGAGATGGTGACAAAGC+CGG 0.567634 1_4:+23577205 Msa0156860:CDS
ACAGAAATAATGTGGGAACA+TGG 0.568395 1_4:-23576390 None:intergenic
AGCAAGACATCCAGTTCGCA+TGG 0.572129 1_4:-23575023 None:intergenic
GCAAGATGGAACCATGGTGT+TGG 0.572620 1_4:+23577453 Msa0156860:CDS
AACCATGGTGTTGGGTATGT+TGG 0.578818 1_4:+23577462 Msa0156860:CDS
ATTATGAGGAAGCTTTGGAA+GGG 0.579688 1_4:+23576610 Msa0156860:CDS
CGATTACTTTGCAATAAAGA+GGG 0.582695 1_4:+23574953 Msa0156860:CDS
ATATAAATTGAAGCAAATGT+GGG 0.584676 1_4:+23575921 Msa0156860:CDS
GGAATGTTGTTATAATGTGA+TGG 0.585101 1_4:-23577573 None:intergenic
GGAGGACAAAGATGCAGAGG+AGG 0.585160 1_4:+23576941 Msa0156860:CDS
GATGTAGATGCCATGAACAA+AGG 0.588527 1_4:-23575747 None:intergenic
ATTTGGAGTCACAGAAGCAT+CGG 0.589265 1_4:-23577287 None:intergenic
GTACGGTGGGATTCCAAATG+TGG 0.589315 1_4:+23577509 Msa0156860:CDS
AAGATAAATGTACGTCGTGA+GGG 0.589836 1_4:+23576651 Msa0156860:CDS
GGCAAGGAAGTTGTCAACAC+AGG 0.590629 1_4:-23576138 None:intergenic
AAACAATAGAGACATATAAG+TGG 0.592614 1_4:+23575608 Msa0156860:CDS
TGCATTCAATAGGCTTTGTG+AGG 0.594478 1_4:+23576566 Msa0156860:CDS
TGGTGTATCAAAGAATAAGT+GGG 0.597383 1_4:+23575888 Msa0156860:CDS
TGTTCTCGTTGTAAAAGGCA+TGG 0.598133 1_4:+23576798 Msa0156860:CDS
TATAACTACACTGATCATCA+AGG 0.599053 1_4:+23575295 Msa0156860:CDS
CTCCAAAGAAGGTCATAATG+AGG 0.600558 1_4:+23576506 Msa0156860:CDS
CAAGATAAATGTACGTCGTG+AGG 0.601675 1_4:+23576650 Msa0156860:CDS
ACTACACTGATCATCAAGGA+AGG 0.601680 1_4:+23575299 Msa0156860:CDS
TGTGATGGAAGGATGTCTGC+TGG 0.601718 1_4:-23577558 None:intergenic
CAGCGGTAAGTGCCCATCGG+CGG 0.602402 1_4:-23576545 None:intergenic
CACTATTTCCAACCTCAGCA+TGG 0.602509 1_4:-23576257 None:intergenic
TACGGTGGGATTCCAAATGT+GGG 0.603843 1_4:+23577510 Msa0156860:CDS
AACAATAGAGACATATAAGT+GGG 0.608859 1_4:+23575609 Msa0156860:CDS
CCCACCGTACACAGGAAAAG+CGG 0.608963 1_4:-23577496 None:intergenic
TTCACGCTCAAATCCAGGCA+AGG 0.610482 1_4:-23576154 None:intergenic
TGTCACATTTGTAGATGAGG+AGG 0.610653 1_4:+23576860 Msa0156860:CDS
CCAAAAGCGATTGTTACCGA+TGG 0.610779 1_4:+23575670 Msa0156860:CDS
TTGTAGAATGGTATGCCACA+TGG 0.614759 1_4:+23577426 Msa0156860:intron
ATCTGTCACTCACCATGCTG+AGG 0.616402 1_4:+23576245 Msa0156860:CDS
TGTCGTAAGGAAGGATGATG+TGG 0.617262 1_4:+23574898 Msa0156860:CDS
CGAGGAGGACAAAGATGCAG+AGG 0.621599 1_4:+23576938 Msa0156860:CDS
CTATTTGTTCCAGGATACAA+AGG 0.622428 1_4:-23577594 None:intergenic
TGTTGTTATAATGTGATGGA+AGG 0.624294 1_4:-23577569 None:intergenic
AGAGGATGAGAAGGAATACG+AGG 0.629568 1_4:+23576920 Msa0156860:CDS
CCTTCCTTACGACAAACCCA+TGG 0.631542 1_4:-23574889 None:intergenic
TTTACAGGATTCAACCACCA+TGG 0.632345 1_4:+23575547 Msa0156860:CDS
TTACCTTTACAGATGATGGT+CGG 0.632472 1_4:+23575407 Msa0156860:CDS
AAATGGTCGTTTCACCATGG+TGG 0.633387 1_4:-23575561 None:intergenic
AGAAAGACAGAGAATTGCAA+TGG 0.633911 1_4:+23574767 Msa0156860:CDS
CTTCATGACAGAAATAATGT+GGG 0.634223 1_4:-23576397 None:intergenic
CCAGATAATGCTAAACCCAA+AGG 0.637551 1_4:+23576720 Msa0156860:CDS
TTTGGAATCCCACCGTACAC+AGG 0.642001 1_4:-23577504 None:intergenic
TCTCGATAATGATACTGTAG+AGG 0.643267 1_4:+23574703 Msa0156860:CDS
TAAAGCTGTGTACTTTGCAG+TGG 0.643836 1_4:+23578126 Msa0156860:CDS
AGAACGACATCGATATGTGA+AGG 0.646884 1_4:+23575982 Msa0156860:CDS
ATGCAGCGGTAAGTGCCCAT+CGG 0.647794 1_4:-23576548 None:intergenic
TGTCATGAAGTATGAGAACA+TGG 0.649925 1_4:+23576410 Msa0156860:CDS
CTGAACAATTTGAGTCTGAG+TGG 0.653434 1_4:+23575845 Msa0156860:CDS
CTACACTGATCATCAAGGAA+GGG 0.653825 1_4:+23575300 Msa0156860:CDS
GGTGGGATTCCAAATGTGGG+TGG 0.655522 1_4:+23577513 Msa0156860:CDS
GGAAGGGTTAGAATTGAAGG+TGG 0.663188 1_4:+23575316 Msa0156860:CDS
ACAAAGCCTATTGAATGCAG+CGG 0.663816 1_4:-23576562 None:intergenic
TGATGTGGTAAAGGATCACG+AGG 0.665235 1_4:+23574913 Msa0156860:CDS
ATGGAAGGATGTCTGCTGGA+GGG 0.689340 1_4:-23577554 None:intergenic
AGCTATGGAGTTTAGCACAG+AGG 0.706449 1_4:+23574829 Msa0156860:CDS
CCGATGGAGATAAATCAATG+AGG 0.708608 1_4:+23575686 Msa0156860:CDS
GGATGAGAAGGAATACGAGG+AGG 0.709490 1_4:+23576923 Msa0156860:CDS
TACCAACATACCCAACACCA+TGG 0.713448 1_4:-23577464 None:intergenic
TTCCATCTTGCAAATCCATG+TGG 0.717728 1_4:-23577441 None:intergenic
AATTATGCAGAAAATCAACA+AGG 0.718950 1_4:-23576047 None:intergenic
GATGGAAGGATGTCTGCTGG+AGG 0.722334 1_4:-23577555 None:intergenic
GGATTTGCAAGATGGAACCA+TGG 0.726905 1_4:+23577447 Msa0156860:CDS
GATGTGGTAAAGGATCACGA+GGG 0.855257 1_4:+23574914 Msa0156860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATAAGTTTTAAAAAAT+TGG - chr1_4:23577631-23577650 None:intergenic 10.0%
!! AAATCTTGGATTTATAAAAA+AGG + chr1_4:23575267-23575286 Msa0156860:CDS 15.0%
!!! TGTATGATTTTTTCATTTTA+GGG - chr1_4:23576749-23576768 None:intergenic 15.0%
!!! TTGTATGATTTTTTCATTTT+AGG - chr1_4:23576750-23576769 None:intergenic 15.0%
!! TCAATATTAACTGTAATATT+TGG - chr1_4:23577307-23577326 None:intergenic 15.0%
!! AAATGATGATATAAAAGCTA+TGG + chr1_4:23574814-23574833 Msa0156860:CDS 20.0%
!!! TCGGTTAGAAAATATATTTT+GGG + chr1_4:23575426-23575445 Msa0156860:CDS 20.0%
!! ATATAAATTGAAGCAAATGT+GGG + chr1_4:23575921-23575940 Msa0156860:CDS 20.0%
!!! TTGGAAATAGTGTAATTTTT+AGG + chr1_4:23576268-23576287 Msa0156860:CDS 20.0%
!!! TGGAAATAGTGTAATTTTTA+GGG + chr1_4:23576269-23576288 Msa0156860:CDS 20.0%
!!! GTATGATTTTTTCATTTTAG+GGG - chr1_4:23576748-23576767 None:intergenic 20.0%
!!! AATGTCTATATTTGTTGTTT+TGG - chr1_4:23577260-23577279 None:intergenic 20.0%
! AGAAGAATGAAGATAGTAAT+AGG + chr1_4:23574996-23575015 Msa0156860:CDS 25.0%
! AATCTTCTGAATGAAATCAT+AGG - chr1_4:23575062-23575081 None:intergenic 25.0%
! ATGATTTCATTCAGAAGATT+TGG + chr1_4:23575062-23575081 Msa0156860:CDS 25.0%
! TTCATTTCATTCCGAATTAT+AGG + chr1_4:23575140-23575159 Msa0156860:CDS 25.0%
! TCACTCAATTTCCTATAATT+CGG - chr1_4:23575154-23575173 None:intergenic 25.0%
! TTATAGGAAATTGAGTGAAT+CGG + chr1_4:23575156-23575175 Msa0156860:CDS 25.0%
! TCATATACTAGGTTTCTTAA+TGG + chr1_4:23575225-23575244 Msa0156860:CDS 25.0%
! CATATACTAGGTTTCTTAAT+GGG + chr1_4:23575226-23575245 Msa0156860:CDS 25.0%
!! AAAGGTAAACTCTGAAAAAA+AGG - chr1_4:23575395-23575414 None:intergenic 25.0%
!! GTCGGTTAGAAAATATATTT+TGG + chr1_4:23575425-23575444 Msa0156860:CDS 25.0%
!! ATACCTGTTCTTTTTATAAG+TGG - chr1_4:23575509-23575528 None:intergenic 25.0%
! AATCCTGTAAAAATTACAAG+CGG - chr1_4:23575538-23575557 None:intergenic 25.0%
! AATTAAAGCACATGCAAAAA+TGG - chr1_4:23575581-23575600 None:intergenic 25.0%
! AAACAATAGAGACATATAAG+TGG + chr1_4:23575608-23575627 Msa0156860:CDS 25.0%
! AACAATAGAGACATATAAGT+GGG + chr1_4:23575609-23575628 Msa0156860:CDS 25.0%
! CATATAAATTGAAGCAAATG+TGG + chr1_4:23575920-23575939 Msa0156860:CDS 25.0%
! AATTATGCAGAAAATCAACA+AGG - chr1_4:23576050-23576069 None:intergenic 25.0%
!! TTTTGCAAATTAGACTTTCT+GGG - chr1_4:23576443-23576462 None:intergenic 25.0%
!! AAAGTCTAATTTGCAAAAGA+TGG + chr1_4:23576445-23576464 Msa0156860:CDS 25.0%
! ATGGTCAAAAACAATAAAGA+AGG + chr1_4:23576464-23576483 Msa0156860:CDS 25.0%
!!! ACTTTATTTCTTTTATGTCC+AGG + chr1_4:23577090-23577109 Msa0156860:intron 25.0%
!!! CATGATGTTGATAATATCTT+TGG + chr1_4:23577172-23577191 Msa0156860:CDS 25.0%
!!! ATGTTTTGATTGTTGTAGAA+TGG + chr1_4:23577414-23577433 Msa0156860:intron 25.0%
!!! ATTGATAGTTGATTTGCATT+AGG + chr1_4:23577932-23577951 Msa0156860:intron 25.0%
!!! TTGATAGTTGATTTGCATTA+GGG + chr1_4:23577933-23577952 Msa0156860:intron 25.0%
!!! TCTTGCTTTAAAGTTTAGAT+TGG + chr1_4:23578031-23578050 Msa0156860:intron 25.0%
GTAGAATTCAGTAGTGATAA+TGG + chr1_4:23574725-23574744 Msa0156860:CDS 30.0%
!!! TTCAGTAGTGATAATGGTTT+TGG + chr1_4:23574731-23574750 Msa0156860:CDS 30.0%
!!! GATAATGGTTTTGGTAATGA+TGG + chr1_4:23574740-23574759 Msa0156860:CDS 30.0%
CGATTACTTTGCAATAAAGA+GGG + chr1_4:23574953-23574972 Msa0156860:CDS 30.0%
ATGAAATGAACAAGATTTGG+AGG - chr1_4:23575130-23575149 None:intergenic 30.0%
GGAATGAAATGAACAAGATT+TGG - chr1_4:23575133-23575152 None:intergenic 30.0%
TAAGAAACCTAGTATATGAC+AGG - chr1_4:23575224-23575243 None:intergenic 30.0%
TATAACTACACTGATCATCA+AGG + chr1_4:23575295-23575314 Msa0156860:CDS 30.0%
!!! TGCTACTTTGAGTTATTTTC+AGG + chr1_4:23575348-23575367 Msa0156860:CDS 30.0%
!! GCTACTTTGAGTTATTTTCA+GGG + chr1_4:23575349-23575368 Msa0156860:CDS 30.0%
! AGGCTTGATTATGAATGTTT+TGG + chr1_4:23575463-23575482 Msa0156860:CDS 30.0%
! GGTGTTAAATGTGTTTTCAA+AGG + chr1_4:23575630-23575649 Msa0156860:CDS 30.0%
! TTTTGGATGTTTTTCGTACA+TGG - chr1_4:23575656-23575675 None:intergenic 30.0%
! TTGAACTCTTCTAAGAATCT+GGG - chr1_4:23575799-23575818 None:intergenic 30.0%
ATGGTGTATCAAAGAATAAG+TGG + chr1_4:23575887-23575906 Msa0156860:CDS 30.0%
TGGTGTATCAAAGAATAAGT+GGG + chr1_4:23575888-23575907 Msa0156860:CDS 30.0%
AAGGTGTGAATTCATTTATC+AGG + chr1_4:23576001-23576020 Msa0156860:CDS 30.0%
CTACAGACATAATGAATTGT+TGG + chr1_4:23576089-23576108 Msa0156860:CDS 30.0%
AAAGTTCCTAGAAGTCAAAA+AGG + chr1_4:23576200-23576219 Msa0156860:CDS 30.0%
!!! TTTTTAGGGTTAACGTTTAC+CGG + chr1_4:23576283-23576302 Msa0156860:CDS 30.0%
CTTCATGACAGAAATAATGT+GGG - chr1_4:23576400-23576419 None:intergenic 30.0%
ACTTCATGACAGAAATAATG+TGG - chr1_4:23576401-23576420 None:intergenic 30.0%
! CTTTTGCAAATTAGACTTTC+TGG - chr1_4:23576444-23576463 None:intergenic 30.0%
AGGTCATAATGAGGAAAAAA+TGG + chr1_4:23576515-23576534 Msa0156860:CDS 30.0%
! TAACAATGCCATTGATTATG+AGG + chr1_4:23576596-23576615 Msa0156860:CDS 30.0%
AAATGTCAATGGCAACAATA+AGG + chr1_4:23576674-23576693 Msa0156860:CDS 30.0%
AAGGTCAATAAATCTGTTGT+TGG + chr1_4:23576693-23576712 Msa0156860:CDS 30.0%
!! ATTTGGTACTGACATAGAAT+GGG - chr1_4:23577146-23577165 None:intergenic 30.0%
! TGTTGTTATAATGTGATGGA+AGG - chr1_4:23577572-23577591 None:intergenic 30.0%
GGAATGTTGTTATAATGTGA+TGG - chr1_4:23577576-23577595 None:intergenic 30.0%
TAACATACACTATTTGTTCC+AGG - chr1_4:23577606-23577625 None:intergenic 30.0%
!! TTCCTAGTTTGTTATTTGAC+AGG + chr1_4:23577871-23577890 Msa0156860:intron 30.0%
!!! GCAGTTAGTTTTTTCTAAGT+TGG + chr1_4:23578057-23578076 Msa0156860:CDS 30.0%
TCTCGATAATGATACTGTAG+AGG + chr1_4:23574703-23574722 Msa0156860:CDS 35.0%
AGAAAGACAGAGAATTGCAA+TGG + chr1_4:23574767-23574786 Msa0156860:CDS 35.0%
GCGATTACTTTGCAATAAAG+AGG + chr1_4:23574952-23574971 Msa0156860:CDS 35.0%
CTTAGTTCATGGTTGTGATT+GGG - chr1_4:23575106-23575125 None:intergenic 35.0%
ACTTAGTTCATGGTTGTGAT+TGG - chr1_4:23575107-23575126 None:intergenic 35.0%
TCGGATAAACAGATTGTTAG+TGG + chr1_4:23575175-23575194 Msa0156860:CDS 35.0%
GTAAGAACCTGTCATATACT+AGG + chr1_4:23575214-23575233 Msa0156860:CDS 35.0%
! GATTTTCATGTCCTCCTTTT+TGG - chr1_4:23575252-23575271 None:intergenic 35.0%
AAAGGAGGACATGAAAATCT+TGG + chr1_4:23575253-23575272 Msa0156860:CDS 35.0%
GAGTTTACCTTTACAGATGA+TGG + chr1_4:23575403-23575422 Msa0156860:CDS 35.0%
! TTACCTTTACAGATGATGGT+CGG + chr1_4:23575407-23575426 Msa0156860:CDS 35.0%
!!! TTATGAATGTTTTGGCGATG+TGG + chr1_4:23575471-23575490 Msa0156860:CDS 35.0%
ACGCCACTTATAAAAAGAAC+AGG + chr1_4:23575503-23575522 Msa0156860:CDS 35.0%
! AAGCCGCTTGTAATTTTTAC+AGG + chr1_4:23575532-23575551 Msa0156860:CDS 35.0%
!! CCTCATTGATTTATCTCCAT+CGG - chr1_4:23575689-23575708 None:intergenic 35.0%
GAGATGTATTTCCGAATTCA+AGG + chr1_4:23575719-23575738 Msa0156860:CDS 35.0%
! GTTGAACTCTTCTAAGAATC+TGG - chr1_4:23575800-23575819 None:intergenic 35.0%
AAGAGAGTTGTTGACAGTTA+TGG + chr1_4:23575868-23575887 Msa0156860:CDS 35.0%
TTCTAACTCCACACACAAAA+TGG - chr1_4:23575966-23575985 None:intergenic 35.0%
!!! TTATCGCCTTTTTGACTTCT+AGG - chr1_4:23576209-23576228 None:intergenic 35.0%
AGAAGTCAAAAAGGCGATAA+AGG + chr1_4:23576209-23576228 Msa0156860:CDS 35.0%
!!! TTTTTGGGTTCATCATGACA+AGG + chr1_4:23576317-23576336 Msa0156860:CDS 35.0%
ACAGAAATAATGTGGGAACA+TGG - chr1_4:23576393-23576412 None:intergenic 35.0%
TGTCATGAAGTATGAGAACA+TGG + chr1_4:23576410-23576429 Msa0156860:CDS 35.0%
TTCCTCATTATGACCTTCTT+TGG - chr1_4:23576511-23576530 None:intergenic 35.0%
CAAAGCTTCCTCATAATCAA+TGG - chr1_4:23576607-23576626 None:intergenic 35.0%
! CATTGATTATGAGGAAGCTT+TGG + chr1_4:23576605-23576624 Msa0156860:CDS 35.0%
!! ATTATGAGGAAGCTTTGGAA+GGG + chr1_4:23576610-23576629 Msa0156860:CDS 35.0%
AAGATAAATGTACGTCGTGA+GGG + chr1_4:23576651-23576670 Msa0156860:CDS 35.0%
ACATCAATTCCAGCAAGTAT+TGG - chr1_4:23576843-23576862 None:intergenic 35.0%
TGATGTCACATTTGTAGATG+AGG + chr1_4:23576857-23576876 Msa0156860:CDS 35.0%
GGATAAAGAAGAAGATGAGA+AGG + chr1_4:23576893-23576912 Msa0156860:CDS 35.0%
ACAGCAAATTCATCACAAGA+TGG - chr1_4:23577060-23577079 None:intergenic 35.0%
!! CATTTGGTACTGACATAGAA+TGG - chr1_4:23577147-23577166 None:intergenic 35.0%
CATTCTATGTCAGTACCAAA+TGG + chr1_4:23577145-23577164 Msa0156860:CDS 35.0%
TCAACATCATGTCTACCATT+TGG - chr1_4:23577163-23577182 None:intergenic 35.0%
GGTATTAAACGTAAGAGAGA+TGG + chr1_4:23577193-23577212 Msa0156860:CDS 35.0%
! AGAGTCTTGTGTTGAAAAAC+CGG - chr1_4:23577227-23577246 None:intergenic 35.0%
!! TTTTTCAACACAAGACTCTG+CGG + chr1_4:23577228-23577247 Msa0156860:CDS 35.0%
AACAACATTCCTTTGTATCC+TGG + chr1_4:23577585-23577604 Msa0156860:CDS 35.0%
CTATTTGTTCCAGGATACAA+AGG - chr1_4:23577597-23577616 None:intergenic 35.0%
ATTGTTTGTAAGTGCTCGTT+TGG + chr1_4:23577792-23577811 Msa0156860:intron 35.0%
GACCTGTCAAATAACAAACT+AGG - chr1_4:23577876-23577895 None:intergenic 35.0%
TTGACAGGTCGAAGTAAAAT+TGG + chr1_4:23577886-23577905 Msa0156860:intron 35.0%
TTTGCATTAGGGAGTTGAAT+TGG + chr1_4:23577944-23577963 Msa0156860:intron 35.0%
! TAGGGAGTTGAATTGGTAAT+TGG + chr1_4:23577951-23577970 Msa0156860:intron 35.0%
GGTAATTGGCAAACCAATTT+CGG + chr1_4:23577965-23577984 Msa0156860:intron 35.0%
ATGCTGAGTTGCTTCACTAT+AGG - chr1_4:23574684-23574703 None:intergenic 40.0%
AAGGAAGGATGATGTGGTAA+AGG + chr1_4:23574904-23574923 Msa0156860:CDS 40.0%
GATTTGGAGGACTTAGTTCA+TGG - chr1_4:23575117-23575136 None:intergenic 40.0%
! GTTAGTGGTTTGCATTCTCA+AGG + chr1_4:23575190-23575209 Msa0156860:CDS 40.0%
! GGTTTCTTAATGGGCCAAAA+AGG + chr1_4:23575235-23575254 Msa0156860:CDS 40.0%
! TTCTTAATGGGCCAAAAAGG+AGG + chr1_4:23575238-23575257 Msa0156860:CDS 40.0%
ACTACACTGATCATCAAGGA+AGG + chr1_4:23575299-23575318 Msa0156860:CDS 40.0%
CTACACTGATCATCAAGGAA+GGG + chr1_4:23575300-23575319 Msa0156860:CDS 40.0%
CAAGGAAGGGTTAGAATTGA+AGG + chr1_4:23575313-23575332 Msa0156860:CDS 40.0%
TAACCGACCATCATCTGTAA+AGG - chr1_4:23575413-23575432 None:intergenic 40.0%
TTTACAGGATTCAACCACCA+TGG + chr1_4:23575547-23575566 Msa0156860:CDS 40.0%
CAAAAATGGTCGTTTCACCA+TGG - chr1_4:23575567-23575586 None:intergenic 40.0%
CCGATGGAGATAAATCAATG+AGG + chr1_4:23575686-23575705 Msa0156860:CDS 40.0%
GATGTAGATGCCATGAACAA+AGG - chr1_4:23575750-23575769 None:intergenic 40.0%
CACTCAGACTCAAATTGTTC+AGG - chr1_4:23575847-23575866 None:intergenic 40.0%
CTGAACAATTTGAGTCTGAG+TGG + chr1_4:23575845-23575864 Msa0156860:CDS 40.0%
AGAACGACATCGATATGTGA+AGG + chr1_4:23575982-23576001 Msa0156860:CDS 40.0%
TCATCATTTGCCTCCAAAGA+AGG + chr1_4:23576495-23576514 Msa0156860:CDS 40.0%
CTCATTATGACCTTCTTTGG+AGG - chr1_4:23576508-23576527 None:intergenic 40.0%
CTCCAAAGAAGGTCATAATG+AGG + chr1_4:23576506-23576525 Msa0156860:CDS 40.0%
ACAAAGCCTATTGAATGCAG+CGG - chr1_4:23576565-23576584 None:intergenic 40.0%
! TGCATTCAATAGGCTTTGTG+AGG + chr1_4:23576566-23576585 Msa0156860:CDS 40.0%
!! GATTATGAGGAAGCTTTGGA+AGG + chr1_4:23576609-23576628 Msa0156860:CDS 40.0%
CAAGATAAATGTACGTCGTG+AGG + chr1_4:23576650-23576669 Msa0156860:CDS 40.0%
! CCTTTGGGTTTAGCATTATC+TGG - chr1_4:23576723-23576742 None:intergenic 40.0%
CCAGATAATGCTAAACCCAA+AGG + chr1_4:23576720-23576739 Msa0156860:CDS 40.0%
!! TTCATTTTAGGGGCTCCTTT+GGG - chr1_4:23576738-23576757 None:intergenic 40.0%
!! TTTCATTTTAGGGGCTCCTT+TGG - chr1_4:23576739-23576758 None:intergenic 40.0%
GACGTTGTTCTCGTTGTAAA+AGG + chr1_4:23576793-23576812 Msa0156860:CDS 40.0%
TGTTCTCGTTGTAAAAGGCA+TGG + chr1_4:23576798-23576817 Msa0156860:CDS 40.0%
!! AGAAAGTGTCCAATACTTGC+TGG + chr1_4:23576831-23576850 Msa0156860:CDS 40.0%
TGTCACATTTGTAGATGAGG+AGG + chr1_4:23576860-23576879 Msa0156860:CDS 40.0%
AGAAGATGAGAAGGAGAAAG+AGG + chr1_4:23576902-23576921 Msa0156860:CDS 40.0%
GGGTTTCATCATTCATGTCA+TGG - chr1_4:23577126-23577145 None:intergenic 40.0%
! ATTTGGAGTCACAGAAGCAT+CGG - chr1_4:23577290-23577309 None:intergenic 40.0%
TTGTAGAATGGTATGCCACA+TGG + chr1_4:23577426-23577445 Msa0156860:intron 40.0%
TTCCATCTTGCAAATCCATG+TGG - chr1_4:23577444-23577463 None:intergenic 40.0%
GAAGTTAATCCACCCACATT+TGG - chr1_4:23577525-23577544 None:intergenic 40.0%
AGGTCGAAGTAAAATTGGAG+TGG + chr1_4:23577891-23577910 Msa0156860:intron 40.0%
AATTGGCAAACCAATTTCGG+TGG + chr1_4:23577968-23577987 Msa0156860:intron 40.0%
TAAAGCTGTGTACTTTGCAG+TGG + chr1_4:23578126-23578145 Msa0156860:CDS 40.0%
AGCTATGGAGTTTAGCACAG+AGG + chr1_4:23574829-23574848 Msa0156860:CDS 45.0%
AAAGCGTATGCTCGTTTCCA+TGG + chr1_4:23574872-23574891 Msa0156860:CDS 45.0%
AAGCGTATGCTCGTTTCCAT+GGG + chr1_4:23574873-23574892 Msa0156860:CDS 45.0%
GTTTCCATGGGTTTGTCGTA+AGG + chr1_4:23574885-23574904 Msa0156860:CDS 45.0%
TGTCGTAAGGAAGGATGATG+TGG + chr1_4:23574898-23574917 Msa0156860:CDS 45.0%
TGATGTGGTAAAGGATCACG+AGG + chr1_4:23574913-23574932 Msa0156860:CDS 45.0%
GATGTGGTAAAGGATCACGA+GGG + chr1_4:23574914-23574933 Msa0156860:CDS 45.0%
ACGAGGGAAAAATTGTTGCG+CGG + chr1_4:23574930-23574949 Msa0156860:CDS 45.0%
AATAGGCAAACCATGCGAAC+TGG + chr1_4:23575013-23575032 Msa0156860:CDS 45.0%
GGAAGGGTTAGAATTGAAGG+TGG + chr1_4:23575316-23575335 Msa0156860:CDS 45.0%
AAATGGTCGTTTCACCATGG+TGG - chr1_4:23575564-23575583 None:intergenic 45.0%
! CCATCGGTAACAATCGCTTT+TGG - chr1_4:23575673-23575692 None:intergenic 45.0%
CCAAAAGCGATTGTTACCGA+TGG + chr1_4:23575670-23575689 Msa0156860:CDS 45.0%
CAAAGGCGATGCCTTGAATT+CGG - chr1_4:23575733-23575752 None:intergenic 45.0%
! ATGCGAGACCATTTTGTGTG+TGG + chr1_4:23575955-23575974 Msa0156860:CDS 45.0%
CACTATTTCCAACCTCAGCA+TGG - chr1_4:23576260-23576279 None:intergenic 45.0%
! ACCGGAAAGATGCAGCTTTT+TGG + chr1_4:23576301-23576320 Msa0156860:CDS 45.0%
CCCAAAAAGCTGCATCTTTC+CGG - chr1_4:23576305-23576324 None:intergenic 45.0%
! CCGGAAAGATGCAGCTTTTT+GGG + chr1_4:23576302-23576321 Msa0156860:CDS 45.0%
CACTTACCGCTGCATTCAAT+AGG + chr1_4:23576556-23576575 Msa0156860:CDS 45.0%
CACATTTGTAGATGAGGAGG+AGG + chr1_4:23576863-23576882 Msa0156860:CDS 45.0%
ATTTGTAGATGAGGAGGAGG+AGG + chr1_4:23576866-23576885 Msa0156860:CDS 45.0%
GAAGGAGAAAGAGGATGAGA+AGG + chr1_4:23576911-23576930 Msa0156860:CDS 45.0%
AGAGGATGAGAAGGAATACG+AGG + chr1_4:23576920-23576939 Msa0156860:CDS 45.0%
TGTCATGGCTTATAGACACC+TGG - chr1_4:23577111-23577130 None:intergenic 45.0%
AAGAGAGATGGTGACAAAGC+CGG + chr1_4:23577205-23577224 Msa0156860:CDS 45.0%
TGCCACATGGATTTGCAAGA+TGG + chr1_4:23577439-23577458 Msa0156860:CDS 45.0%
GGATTTGCAAGATGGAACCA+TGG + chr1_4:23577447-23577466 Msa0156860:CDS 45.0%
CAAGATGGAACCATGGTGTT+GGG + chr1_4:23577454-23577473 Msa0156860:CDS 45.0%
! AACCATGGTGTTGGGTATGT+TGG + chr1_4:23577462-23577481 Msa0156860:CDS 45.0%
TACCAACATACCCAACACCA+TGG - chr1_4:23577467-23577486 None:intergenic 45.0%
!! TTTCCCGCTTTTCCTGTGTA+CGG + chr1_4:23577492-23577511 Msa0156860:CDS 45.0%
TACGGTGGGATTCCAAATGT+GGG + chr1_4:23577510-23577529 Msa0156860:CDS 45.0%
ACAGTTTACGAGCGTGTTGA+AGG + chr1_4:23577704-23577723 Msa0156860:intron 45.0%
CCTTCCTTACGACAAACCCA+TGG - chr1_4:23574892-23574911 None:intergenic 50.0%
CCATGGGTTTGTCGTAAGGA+AGG + chr1_4:23574889-23574908 Msa0156860:CDS 50.0%
AGCAAGACATCCAGTTCGCA+TGG - chr1_4:23575026-23575045 None:intergenic 50.0%
TTTGGGCAGATTCTGCAAGC+AGG + chr1_4:23575443-23575462 Msa0156860:CDS 50.0%
!! CAAGGCATCGCCTTTGTTCA+TGG + chr1_4:23575737-23575756 Msa0156860:CDS 50.0%
GGCAAGGAAGTTGTCAACAC+AGG - chr1_4:23576141-23576160 None:intergenic 50.0%
! GTGTTGACAACTTCCTTGCC+TGG + chr1_4:23576141-23576160 Msa0156860:CDS 50.0%
TTCACGCTCAAATCCAGGCA+AGG - chr1_4:23576157-23576176 None:intergenic 50.0%
GAAGCTTCACGCTCAAATCC+AGG - chr1_4:23576162-23576181 None:intergenic 50.0%
ATCTGTCACTCACCATGCTG+AGG + chr1_4:23576245-23576264 Msa0156860:CDS 50.0%
AAATGGTCATGTTCCGCCGA+TGG + chr1_4:23576532-23576551 Msa0156860:CDS 50.0%
AATGGTCATGTTCCGCCGAT+GGG + chr1_4:23576533-23576552 Msa0156860:CDS 50.0%
CGTCGTGAGGGAAATGTCAA+TGG + chr1_4:23576663-23576682 Msa0156860:CDS 50.0%
AGATGAGGAGGAGGAGGAAA+AGG + chr1_4:23576872-23576891 Msa0156860:CDS 50.0%
GGATGAGAAGGAATACGAGG+AGG + chr1_4:23576923-23576942 Msa0156860:CDS 50.0%
GCAAGATGGAACCATGGTGT+TGG + chr1_4:23577453-23577472 Msa0156860:CDS 50.0%
! TTTGGAATCCCACCGTACAC+AGG - chr1_4:23577507-23577526 None:intergenic 50.0%
GTACGGTGGGATTCCAAATG+TGG + chr1_4:23577509-23577528 Msa0156860:CDS 50.0%
ATGGAAGGATGTCTGCTGGA+GGG - chr1_4:23577557-23577576 None:intergenic 50.0%
! TGTGATGGAAGGATGTCTGC+TGG - chr1_4:23577561-23577580 None:intergenic 50.0%
TACGAGCGTGTTGAAGGACA+TGG + chr1_4:23577710-23577729 Msa0156860:intron 50.0%
TGCTAGAACGCCACCGAAAT+TGG - chr1_4:23577981-23578000 None:intergenic 50.0%
GTCACTCACCATGCTGAGGT+TGG + chr1_4:23576249-23576268 Msa0156860:CDS 55.0%
ATGCAGCGGTAAGTGCCCAT+CGG - chr1_4:23576551-23576570 None:intergenic 55.0%
CGAGGAGGACAAAGATGCAG+AGG + chr1_4:23576938-23576957 Msa0156860:CDS 55.0%
GGAGGACAAAGATGCAGAGG+AGG + chr1_4:23576941-23576960 Msa0156860:CDS 55.0%
GGACAAAGATGCAGAGGAGG+AGG + chr1_4:23576944-23576963 Msa0156860:CDS 55.0%
CAAAGATGCAGAGGAGGAGG+TGG + chr1_4:23576947-23576966 Msa0156860:CDS 55.0%
CCACCGTACACAGGAAAAGC+GGG - chr1_4:23577498-23577517 None:intergenic 55.0%
CCCACCGTACACAGGAAAAG+CGG - chr1_4:23577499-23577518 None:intergenic 55.0%
!! CCGCTTTTCCTGTGTACGGT+GGG + chr1_4:23577496-23577515 Msa0156860:CDS 55.0%
GGTGGGATTCCAAATGTGGG+TGG + chr1_4:23577513-23577532 Msa0156860:CDS 55.0%
GATGGAAGGATGTCTGCTGG+AGG - chr1_4:23577558-23577577 None:intergenic 55.0%
AGATGCAGAGGAGGAGGTGG+AGG + chr1_4:23576950-23576969 Msa0156860:CDS 60.0%
!! CCCGCTTTTCCTGTGTACGG+TGG + chr1_4:23577495-23577514 Msa0156860:CDS 60.0%
CAGCGGTAAGTGCCCATCGG+CGG - chr1_4:23576548-23576567 None:intergenic 65.0%
TGCAGAGGAGGAGGTGGAGG+AGG + chr1_4:23576953-23576972 Msa0156860:CDS 65.0%
AGAGGAGGAGGTGGAGGAGG+AGG + chr1_4:23576956-23576975 Msa0156860:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 23574674 23578153 23574674 ID=Msa0156860;Name=Msa0156860
chr1_4 mRNA 23574674 23578153 23574674 ID=Msa0156860-mRNA-1;Parent=Msa0156860;Name=Msa0156860-mRNA-1;_AED=0.28;_eAED=0.30;_QI=0|0|0|0.25|1|1|4|0|953
chr1_4 exon 23574674 23577025 23574674 ID=Msa0156860-mRNA-1:exon:8224;Parent=Msa0156860-mRNA-1
chr1_4 exon 23577112 23577330 23577112 ID=Msa0156860-mRNA-1:exon:8225;Parent=Msa0156860-mRNA-1
chr1_4 exon 23577432 23577617 23577432 ID=Msa0156860-mRNA-1:exon:8226;Parent=Msa0156860-mRNA-1
chr1_4 exon 23578049 23578153 23578049 ID=Msa0156860-mRNA-1:exon:8227;Parent=Msa0156860-mRNA-1
chr1_4 CDS 23574674 23577025 23574674 ID=Msa0156860-mRNA-1:cds;Parent=Msa0156860-mRNA-1
chr1_4 CDS 23577112 23577330 23577112 ID=Msa0156860-mRNA-1:cds;Parent=Msa0156860-mRNA-1
chr1_4 CDS 23577432 23577617 23577432 ID=Msa0156860-mRNA-1:cds;Parent=Msa0156860-mRNA-1
chr1_4 CDS 23578049 23578153 23578049 ID=Msa0156860-mRNA-1:cds;Parent=Msa0156860-mRNA-1
Gene Sequence

>Msa0156860

ATGTCAGCCTATAGTGAAGCAACTCAGCATCTCGATAATGATACTGTAGAGGTAGAATTCAGTAGTGATAATGGTTTTGGTAATGATGGAGATAGAAAGACAGAGAATTGCAATGGTCAGAAAAGTTTAAGTGAAATTACAAATGATGATATAAAAGCTATGGAGTTTAGCACAGAGGAAGAAGCTATACAATTTTACAAAGCGTATGCTCGTTTCCATGGGTTTGTCGTAAGGAAGGATGATGTGGTAAAGGATCACGAGGGAAAAATTGTTGCGCGGCGATTACTTTGCAATAAAGAGGGAAAGAGTGAAACTAAAAATAAGAAGAATGAAGATAGTAATAGGCAAACCATGCGAACTGGATGTCTTGCTAGACTTCGAGTAGCCTATGATTTCATTCAGAAGATTTGGAAAGTTACTAATTTTGAGCCCAATCACAACCATGAACTAAGTCCTCCAAATCTTGTTCATTTCATTCCGAATTATAGGAAATTGAGTGAATCGGATAAACAGATTGTTAGTGGTTTGCATTCTCAAGGTGTAAGAACCTGTCATATACTAGGTTTCTTAATGGGCCAAAAAGGAGGACATGAAAATCTTGGATTTATAAAAAAGGATCTATATAACTACACTGATCATCAAGGAAGGGTTAGAATTGAAGGTGGTGATACTTTTGCTACTTTGAGTTATTTTCAGGGTAAAGCTGATAATGATTCGACCTTTTTTTCAGAGTTTACCTTTACAGATGATGGTCGGTTAGAAAATATATTTTGGGCAGATTCTGCAAGCAGGCTTGATTATGAATGTTTTGGCGATGTGGTTCTCTTTGACGCCACTTATAAAAAGAACAGGTATGACAAGCCGCTTGTAATTTTTACAGGATTCAACCACCATGGTGAAACGACCATTTTTGCATGTGCTTTAATTTCTGATGAAACAATAGAGACATATAAGTGGGTGTTAAATGTGTTTTCAAAGGCCATGTACGAAAAACATCCAAAAGCGATTGTTACCGATGGAGATAAATCAATGAGGAAAGCTATTAGAGATGTATTTCCGAATTCAAGGCATCGCCTTTGTTCATGGCATCTACATCAAAATGCTTGTGTGCATGTAAAAGATCCCAGATTCTTAGAAGAGTTCAACAAACTCATGTATTCTAATTACACACCTGAACAATTTGAGTCTGAGTGGAAGAGAGTTGTTGACAGTTATGGTGTATCAAAGAATAAGTGGGTGATTAAAACATATAAATTGAAGCAAATGTGGGCAAGTTCATACATGCGAGACCATTTTGTGTGTGGAGTTAGAACGACATCGATATGTGAAGGTGTGAATTCATTTATCAGGAAGTATGTTCAAAACAAAAATAGCCTTGTTGATTTTCTGCATAATTTTGAAAGAGCTGTCAAAGACTACAGACATAATGAATTGTTGGCTGATTTCAAATCATTTTATTATAAACCTGTGTTGACAACTTCCTTGCCTGGATTTGAGCGTGAAGCTTCAGAAATATTCACTTTTAAAAAGTTCCTAGAAGTCAAAAAGGCGATAAAGGATGTTGCTGCAGAATCTGTCACTCACCATGCTGAGGTTGGAAATAGTGTAATTTTTAGGGTTAACGTTTACCGGAAAGATGCAGCTTTTTGGGTTCATCATGACAAGGAGCATAATAAATTTATATGTGATTGTAGACGATTTGAACGCGAAAGACTTCCATGTTCCCACATTATTTCTGTCATGAAGTATGAGAACATGGATGCTTTCCCAGAAAGTCTAATTTGCAAAAGATGGTCAAAAACAATAAAGAAGGATCACATCTCATCATTTGCCTCCAAAGAAGGTCATAATGAGGAAAAAATGGTCATGTTCCGCCGATGGGCACTTACCGCTGCATTCAATAGGCTTTGTGAGGTGTCTTGTAACAATGCCATTGATTATGAGGAAGCTTTGGAAGGGATTAATAGTTTGTGTGACAAGATAAATGTACGTCGTGAGGGAAATGTCAATGGCAACAATAAGGTCAATAAATCTGTTGTTGGAGATCCAGATAATGCTAAACCCAAAGGAGCCCCTAAAATGAAAAAATCATACAAAAATCAGAGACACGTGAAAGAAAGACGTTGTTCTCGTTGTAAAAGGCATGGTCACACAATCAGAAAGTGTCCAATACTTGCTGGAATTGATGTCACATTTGTAGATGAGGAGGAGGAGGAAAAGGATAAAGAAGAAGATGAGAAGGAGAAAGAGGATGAGAAGGAATACGAGGAGGACAAAGATGCAGAGGAGGAGGTGGAGGAGGAGGAAGATGATACACATGTTGAATCTGAATATGAATCAAATCGTTTAAATGTGTCTATAAGCCATGACATGAATGATGAAACCCATTCTATGTCAGTACCAAATGGTAGACATGATGTTGATAATATCTTTGGTATTAAACGTAAGAGAGATGGTGACAAAGCCGGTTTTTCAACACAAGACTCTGCGGCGAATACCAAAACAACAAATATAGACATTAGAAAGACCGATGCTTCTGTGACTCCAAATATTACAGTTAATATTGAAAACAATGGTATGCCACATGGATTTGCAAGATGGAACCATGGTGTTGGGTATGTTGGTAACTATTTTCCCGCTTTTCCTGTGTACGGTGGGATTCCAAATGTGGGTGGATTAACTTCTTCACAATTCCCTCCAGCAGACATCCTTCCATCACATTATAACAACATTCCTTTGTATCCTGGAACAAATAGTATTGGATTGCAGTTAGTTTTTTCTAAGTTGGAAGCTGAAAACTTGTCAACTAACAAGCGATATGTTAGTGATGATGATAAAGCTGTGTACTTTGCAGTGGTTTAG
Protein sequence

>Msa0156860

MSAYSEATQHLDNDTVEVEFSSDNGFGNDGDRKTENCNGQKSLSEITNDDIKAMEFSTEEEAIQFYKAYARFHGFVVRKDDVVKDHEGKIVARRLLCNKEGKSETKNKKNEDSNRQTMRTGCLARLRVAYDFIQKIWKVTNFEPNHNHELSPPNLVHFIPNYRKLSESDKQIVSGLHSQGVRTCHILGFLMGQKGGHENLGFIKKDLYNYTDHQGRVRIEGGDTFATLSYFQGKADNDSTFFSEFTFTDDGRLENIFWADSASRLDYECFGDVVLFDATYKKNRYDKPLVIFTGFNHHGETTIFACALISDETIETYKWVLNVFSKAMYEKHPKAIVTDGDKSMRKAIRDVFPNSRHRLCSWHLHQNACVHVKDPRFLEEFNKLMYSNYTPEQFESEWKRVVDSYGVSKNKWVIKTYKLKQMWASSYMRDHFVCGVRTTSICEGVNSFIRKYVQNKNSLVDFLHNFERAVKDYRHNELLADFKSFYYKPVLTTSLPGFEREASEIFTFKKFLEVKKAIKDVAAESVTHHAEVGNSVIFRVNVYRKDAAFWVHHDKEHNKFICDCRRFERERLPCSHIISVMKYENMDAFPESLICKRWSKTIKKDHISSFASKEGHNEEKMVMFRRWALTAAFNRLCEVSCNNAIDYEEALEGINSLCDKINVRREGNVNGNNKVNKSVVGDPDNAKPKGAPKMKKSYKNQRHVKERRCSRCKRHGHTIRKCPILAGIDVTFVDEEEEEKDKEEDEKEKEDEKEYEEDKDAEEEVEEEEDDTHVESEYESNRLNVSISHDMNDETHSMSVPNGRHDVDNIFGIKRKRDGDKAGFSTQDSAANTKTTNIDIRKTDASVTPNITVNIENNGMPHGFARWNHGVGYVGNYFPAFPVYGGIPNVGGLTSSQFPPADILPSHYNNIPLYPGTNSIGLQLVFSKLEAENLSTNKRYVSDDDKAVYFAVV*