AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485760 MtrunA17_Chr2g0287651 41.470 721 388 12 13 722 47 744 0.0 557
Msa0485760 MtrunA17_Chr1g0203051 34.116 554 355 4 43 590 72 621 2.47e-114 365
Msa0485760 MtrunA17_Chr5g0448761 32.746 568 366 8 52 605 62 627 6.73e-94 314
Msa0485760 MtrunA17_Chr1g0202341 32.653 588 368 13 49 618 50 627 1.99e-93 310
Msa0485760 MtrunA17_Chr2g0296781 31.128 665 422 16 54 696 1 651 4.76e-86 291
Msa0485760 MtrunA17_Chr2g0324011 29.210 582 377 7 53 614 13 579 3.88e-85 285
Msa0485760 MtrunA17_Chr3g0082121 31.171 555 360 7 54 600 47 587 1.53e-84 286
Msa0485760 MtrunA17_Chr8g0363841 29.009 555 385 6 57 603 24 577 2.79e-84 285
Msa0485760 MtrunA17_Chr5g0441581 28.936 667 412 15 53 692 35 666 1.28e-81 278
Msa0485760 MtrunA17_Chr1g0198761 29.083 698 449 16 56 723 53 734 1.29e-79 275
Msa0485760 MtrunA17_Chr6g0477261 31.499 527 333 9 190 696 22 540 7.54e-77 265
Msa0485760 MtrunA17_Chr6g0458391 28.819 576 365 12 42 600 215 762 3.68e-76 265
Msa0485760 MtrunA17_Chr6g0458391 36.522 115 71 2 53 166 94 207 1.21e-14 78.6
Msa0485760 MtrunA17_Chr1g0207551 29.982 557 380 7 53 603 37 589 1.45e-75 265
Msa0485760 MtrunA17_Chr1g0203721 29.534 579 393 10 56 623 69 643 4.29e-74 261
Msa0485760 MtrunA17_Chr2g0329031 29.597 571 368 14 43 599 7 557 5.26e-71 250
Msa0485760 MtrunA17_Chr3g0080351 28.222 613 377 13 51 640 77 649 1.88e-70 251
Msa0485760 MtrunA17_Chr2g0276841 27.778 558 383 11 56 600 76 626 1.80e-67 239
Msa0485760 MtrunA17_Chr5g0448511 31.218 394 264 3 216 603 5 397 3.20e-65 229
Msa0485760 MtrunA17_Chr1g0196541 29.585 578 359 14 54 604 1 557 5.46e-65 233
Msa0485760 MtrunA17_Chr3g0118611 29.978 447 292 8 218 656 113 546 6.66e-63 228
Msa0485760 MtrunA17_Chr5g0440451 26.346 706 446 20 16 684 19 687 7.28e-63 230
Msa0485760 MtrunA17_Chr2g0291591 29.839 496 327 10 29 511 40 527 2.44e-61 219
Msa0485760 MtrunA17_Chr2g0290391 26.333 600 396 16 28 600 30 610 2.62e-61 221
Msa0485760 MtrunA17_Chr2g0294841 28.722 571 361 14 56 598 51 603 3.18e-61 223
Msa0485760 MtrunA17_Chr2g0291581 27.320 571 374 9 53 604 74 622 4.56e-61 221
Msa0485760 MtrunA17_Chr2g0287061 26.537 618 393 16 55 658 188 758 5.59e-59 217
Msa0485760 MtrunA17_Chr5g0431001 29.062 437 286 7 43 457 50 484 1.68e-58 209
Msa0485760 MtrunA17_Chr1g0164591 32.026 306 192 4 137 436 12 307 7.67e-51 182
Msa0485760 MtrunA17_Chr7g0258861 33.677 291 179 5 47 327 4 290 3.33e-43 159
Msa0485760 MtrunA17_Chr2g0308841 33.188 229 152 1 381 608 4 232 4.47e-39 146
Msa0485760 MtrunA17_Chr1g0149131 33.636 110 68 1 328 432 1 110 4.33e-14 69.7
Msa0485760 MtrunA17_Chr8g0340801 33.028 109 71 1 158 266 1 107 1.34e-13 67.8
Msa0485760 MtrunA17_Chr1g0171741 31.452 124 77 2 51 169 134 254 5.12e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485760 AT4G38180.1 31.625 566 373 7 53 607 76 638 5.72e-92 310
Msa0485760 AT4G15090.1 28.849 669 444 10 19 676 34 681 7.32e-86 294
Msa0485760 AT4G15090.5 28.849 669 444 10 19 676 34 681 7.32e-86 294
Msa0485760 AT4G15090.3 28.849 669 444 10 19 676 34 681 7.32e-86 294
Msa0485760 AT4G15090.2 28.849 669 444 10 19 676 34 681 7.32e-86 294
Msa0485760 AT4G15090.4 28.849 669 444 10 19 676 34 681 7.32e-86 294
Msa0485760 AT2G27110.2 28.171 607 392 13 26 617 17 594 2.25e-72 256
Msa0485760 AT2G27110.1 28.171 607 392 13 26 617 17 594 2.25e-72 256
Msa0485760 AT3G22170.2 27.106 653 403 16 11 638 37 641 1.59e-70 251
Msa0485760 AT3G22170.1 27.106 653 403 16 11 638 37 641 1.59e-70 251
Msa0485760 AT1G80010.1 27.241 580 395 13 53 612 98 670 4.40e-66 236
Msa0485760 AT1G10240.2 27.491 582 400 13 56 623 54 627 6.49e-65 232
Msa0485760 AT1G10240.1 27.491 582 400 13 56 623 54 627 6.49e-65 232
Msa0485760 AT1G76320.2 27.046 562 386 10 54 606 1 547 1.72e-64 232
Msa0485760 AT1G76320.1 27.046 562 386 10 54 606 1 547 1.91e-64 232
Msa0485760 AT1G76320.4 27.046 562 386 10 54 606 1 547 1.91e-64 232
Msa0485760 AT1G76320.3 27.046 562 386 10 54 606 1 547 2.10e-64 230
Msa0485760 AT1G52520.1 28.618 615 390 17 23 608 49 643 7.76e-64 229
Msa0485760 AT3G06250.2 26.656 619 391 15 53 658 193 761 7.96e-63 228
Msa0485760 AT3G06250.1 26.656 619 391 15 53 658 193 761 7.96e-63 228
Msa0485760 AT3G06250.3 26.656 619 391 15 53 658 193 761 7.96e-63 228
Msa0485760 AT4G19990.5 28.227 581 346 14 55 607 26 563 3.67e-62 226
Msa0485760 AT4G19990.3 28.227 581 346 14 55 607 26 563 4.18e-62 225
Msa0485760 AT4G19990.4 28.227 581 346 14 55 607 26 563 4.18e-62 225
Msa0485760 AT4G19990.6 28.227 581 346 14 55 607 26 563 6.18e-62 225
Msa0485760 AT4G19990.2 28.227 581 346 14 55 607 26 563 6.18e-62 225
Msa0485760 AT4G19990.7 28.227 581 346 14 55 607 40 577 6.44e-62 225
Msa0485760 AT5G28530.1 27.544 570 376 14 56 600 61 618 5.17e-61 221
Msa0485760 AT2G27110.3 31.204 407 270 6 218 617 46 449 6.92e-61 221
Msa0485760 AT5G28530.3 27.544 570 372 15 56 600 61 614 1.49e-60 219
Msa0485760 AT5G28530.2 27.544 570 372 15 56 600 61 614 1.49e-60 219
Msa0485760 AT5G18960.2 25.908 633 407 15 40 658 201 785 5.81e-59 217
Msa0485760 AT5G18960.1 25.908 633 407 15 40 658 201 785 5.81e-59 217
Msa0485760 AT2G32250.5 26.937 568 355 10 42 600 34 550 3.06e-57 211
Msa0485760 AT2G32250.2 27.208 566 356 10 42 600 34 550 3.48e-57 212
Msa0485760 AT2G32250.4 27.208 566 356 10 42 600 34 550 3.48e-57 212
Msa0485760 AT2G32250.6 26.937 568 355 10 42 600 34 550 3.88e-57 212
Msa0485760 AT2G32250.1 26.937 568 355 10 42 600 34 550 3.88e-57 212
Msa0485760 AT2G32250.3 26.937 568 355 10 42 600 34 550 3.88e-57 212
Msa0485760 AT4G19990.1 31.671 401 259 9 218 607 110 506 6.89e-57 209
Msa0485760 AT2G32250.7 27.256 554 351 9 54 600 1 509 7.25e-57 210
Msa0485760 AT2G32250.8 27.256 554 351 9 54 600 1 509 7.48e-57 210
Msa0485760 AT4G38170.1 29.494 356 243 4 255 603 45 399 5.83e-54 197
Msa0485760 AT5G28530.4 24.777 561 340 18 56 600 61 555 1.17e-41 163
Msa0485760 AT5G28530.5 24.777 561 336 19 56 600 61 551 4.11e-41 161
Msa0485760 AT3G07500.1 31.977 172 91 7 53 213 36 192 8.59e-12 66.2

Find 168 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGGTTAGAAAATATATTT+TGG 0.123717 3_4:+3560369 Msa0485760:CDS
CCTTTGGGTTTAGCATTATC+TGG 0.190370 3_4:-3561664 None:intergenic
TCAATATTAACTGTAATATT+TGG 0.204657 3_4:-3562248 None:intergenic
TTCATTTGATTCCGAATTAT+AGG 0.217986 3_4:+3560084 Msa0485760:CDS
TTCCTCATTATGACCTTCTT+TGG 0.219846 3_4:-3561452 None:intergenic
GTTGAACTCTTCTAAGAATC+TGG 0.237622 3_4:-3560741 None:intergenic
ATGATTTCATTCAGAAGATT+TGG 0.259205 3_4:+3560006 Msa0485760:CDS
AATGTCTATATTTGTTGTTT+TGG 0.267598 3_4:-3562201 None:intergenic
TCATATACTAGGTTTCTTAA+TGG 0.276146 3_4:+3560169 Msa0485760:CDS
GGAATCAAATGAACAAGATT+TGG 0.280375 3_4:-3560074 None:intergenic
TTCAGTAGTGATAATGGTTT+TGG 0.283086 3_4:+3559675 Msa0485760:CDS
CATGATGTTGATAATATCTT+TGG 0.283165 3_4:+3562116 Msa0485760:CDS
AGAAGAATGAAGATAGTAAT+AGG 0.287511 3_4:+3559940 Msa0485760:CDS
AGGCTTGATTATGAATGTTT+TGG 0.312628 3_4:+3560407 Msa0485760:CDS
TCACTCAATTTCCTATAATT+CGG 0.322105 3_4:-3560095 None:intergenic
CAAGGCATCGCCTTTGTTCA+TGG 0.324273 3_4:+3560681 Msa0485760:CDS
CATATACTAGGTTTCTTAAT+GGG 0.328869 3_4:+3560170 Msa0485760:CDS
CACTCAGACTCAAATTGTTC+AGG 0.330330 3_4:-3560788 None:intergenic
GGTTTCTTAATGGGCCAAAA+AGG 0.332076 3_4:+3560179 Msa0485760:CDS
GTAGAATTCAGTAGTGATAA+TGG 0.335573 3_4:+3559669 Msa0485760:CDS
CCATCGGTAACAATCGCTTT+TGG 0.342091 3_4:-3560614 None:intergenic
GACGTTGTTCTCGTTGTAAA+AGG 0.344539 3_4:+3561737 Msa0485760:CDS
AGATGAGGAGGAGGAGGAAA+AGG 0.348541 3_4:+3561816 Msa0485760:CDS
AGAGGAGGAGGTGGAGGAGG+AGG 0.354178 3_4:+3561900 Msa0485760:CDS
TGCAGAGGAGGAGGTGGAGG+AGG 0.357989 3_4:+3561897 Msa0485760:CDS
GAAGTTAATCCACCCACATT+TGG 0.365859 3_4:-3562466 None:intergenic
CACTTACCGCTGCATTCAAT+AGG 0.379313 3_4:+3561500 Msa0485760:CDS
ACTTAGTTCATGGTTGTGAT+TGG 0.393339 3_4:-3560048 None:intergenic
GAGTTTACCTTTACAGATGA+TGG 0.397514 3_4:+3560347 Msa0485760:CDS
AAGGTGTGAATTCATTTATC+AGG 0.398443 3_4:+3560945 Msa0485760:CDS
TAACAATGCCATTGATTATG+AGG 0.400069 3_4:+3561540 Msa0485760:CDS
AAAGTTCCTAGAAGTCAAAA+AGG 0.400507 3_4:+3561144 Msa0485760:CDS
GAGATGTATTTCCGAATTCA+AGG 0.401974 3_4:+3560663 Msa0485760:CDS
CAAAGGCGATGCCTTGAATT+CGG 0.402388 3_4:-3560674 None:intergenic
TTCTAACTCCACACACAAAA+TGG 0.405607 3_4:-3560907 None:intergenic
CATTTGGTACTGACATAGAA+TGG 0.405927 3_4:-3562088 None:intergenic
CTACAGACATAATGAATTGT+TGG 0.407345 3_4:+3561033 Msa0485760:CDS
GATTTGGATGACTTAGTTCA+TGG 0.410592 3_4:-3560058 None:intergenic
AATCTTCTGAATGAAATCAT+AGG 0.410758 3_4:-3560003 None:intergenic
AAAGGAGGACATGAAAATCT+TGG 0.412933 3_4:+3560197 Msa0485760:CDS
AAATGTCAATGGCAACAATA+AGG 0.413929 3_4:+3561618 Msa0485760:CDS
AACAACATTCCTTTGTATCC+TGG 0.428695 3_4:+3562529 Msa0485760:CDS
TCGGATAAACAGATTGTTAG+TGG 0.430560 3_4:+3560119 Msa0485760:CDS
CTTAGTTCATGGTTGTGATT+GGG 0.431398 3_4:-3560047 None:intergenic
TAACATACACTATTTGTTCC+AGG 0.434470 3_4:-3562547 None:intergenic
GTGTTAACAACTTCCTTGCC+TGG 0.434900 3_4:+3561085 Msa0485760:CDS
AAAGCGTATGCTCGTTTCCA+TGG 0.435800 3_4:+3559816 Msa0485760:CDS
AGAAAGTGTCCAATACTTGC+TGG 0.436958 3_4:+3561775 Msa0485760:CDS
CAAGGAAGGGTTAGAATTGA+AGG 0.441504 3_4:+3560257 Msa0485760:CDS
AGATGCAGAGGAGGAGGTGG+AGG 0.441546 3_4:+3561894 Msa0485760:CDS
TCAACATCATGTCTACCATT+TGG 0.448971 3_4:-3562104 None:intergenic
CAAAGATGCAGAGGAGGAGG+TGG 0.449261 3_4:+3561891 Msa0485760:CDS
CATTGATTATGAGGAAGCTT+TGG 0.458582 3_4:+3561549 Msa0485760:CDS
CTCATTATGACCTTCTTTGG+AGG 0.460106 3_4:-3561449 None:intergenic
AATAGGCAAACCATGCGAAC+TGG 0.460478 3_4:+3559957 Msa0485760:CDS
AAAGTCTAATTTGCAAAAGA+TGG 0.463829 3_4:+3561389 Msa0485760:CDS
TTGAACTCTTCTAAGAATCT+GGG 0.470760 3_4:-3560740 None:intergenic
AAGGTCAATAAATCTGTTGT+TGG 0.472287 3_4:+3561637 Msa0485760:CDS
GTTAGTGGTTTGCATTCTCA+AGG 0.476835 3_4:+3560134 Msa0485760:CDS
ATGCTGAGTTGCTTCACTAT+AGG 0.481546 3_4:-3559625 None:intergenic
GCGATTACTTTGCAATAAAG+AGG 0.481547 3_4:+3559896 Msa0485760:CDS
CATATAAATTGAAGCAAATG+TGG 0.481645 3_4:+3560864 Msa0485760:CDS
GTTTCCATGGGTTTGTCGTA+AGG 0.482758 3_4:+3559829 Msa0485760:CDS
CCTCATTGATTTATCTCCAT+CGG 0.483957 3_4:-3560630 None:intergenic
GGGTTTCATCATTCATGTCA+TGG 0.487067 3_4:-3562067 None:intergenic
AGAAGATGAGAAGGAGAAAG+AGG 0.487385 3_4:+3561846 Msa0485760:CDS
GGACAAAGATGCAGAGGAGG+AGG 0.487775 3_4:+3561888 Msa0485760:CDS
GGATAAAGAAGAAGATGAGA+AGG 0.488336 3_4:+3561837 Msa0485760:CDS
ATGGTGTATCAAAGAATAAG+TGG 0.488352 3_4:+3560831 Msa0485760:CDS
ATTTGGTACTGACATAGAAT+GGG 0.493491 3_4:-3562087 None:intergenic
ACATCAATTCCAGCAAGTAT+TGG 0.494203 3_4:-3561784 None:intergenic
CAAAGCTTCCTCATAATCAA+TGG 0.494233 3_4:-3561548 None:intergenic
GAAGCTTCACGCTCAAATCC+AGG 0.499670 3_4:-3561103 None:intergenic
TCATCATTTGCCTCCAAAGA+AGG 0.501389 3_4:+3561439 Msa0485760:CDS
CAAGATGGAACCATGGTGTT+GGG 0.503043 3_4:+3562398 Msa0485760:CDS
AACTTCTTCACAATTCCCTC+CGG 0.506498 3_4:+3562483 Msa0485760:CDS
GAAGGAGAAAGAGGATGAGA+AGG 0.514047 3_4:+3561855 Msa0485760:CDS
AAATGATGATATAAAAGCTA+TGG 0.514775 3_4:+3559758 Msa0485760:CDS
GTCACTCACCATGCTGAGGT+TGG 0.515437 3_4:+3561193 Msa0485760:CDS
TTATAGGAAATTGAGTGAAT+CGG 0.515530 3_4:+3560100 Msa0485760:CDS
AAGGAAGGATGATGTGGTAA+AGG 0.518755 3_4:+3559848 Msa0485760:CDS
AAGAGAGTTGTTGACAGTTA+TGG 0.523339 3_4:+3560812 Msa0485760:CDS
CCATGGGTTTGTCGTAAGGA+AGG 0.524385 3_4:+3559833 Msa0485760:CDS
CGTCGTGAGGGAAATGTCAA+TGG 0.525065 3_4:+3561607 Msa0485760:CDS
TGCCACATGGATTTGCAAGA+TGG 0.527779 3_4:+3562383 Msa0485760:CDS
GTAAGAACCTGTCATATACT+AGG 0.532163 3_4:+3560158 Msa0485760:CDS
GATTATGAGGAAGCTTTGGA+AGG 0.532969 3_4:+3561553 Msa0485760:CDS
TAACCGACCATCATCTGTAA+AGG 0.533842 3_4:-3560354 None:intergenic
AAATGGTCATGTTCCGCCGA+TGG 0.535969 3_4:+3561476 Msa0485760:CDS
AATGGTCATGTTCCGCCGAT+GGG 0.542538 3_4:+3561477 Msa0485760:CDS
AAGCGTATGCTCGTTTCCAT+GGG 0.546934 3_4:+3559817 Msa0485760:CDS
TTTGGGCAGATTCTGCAAGC+AGG 0.547459 3_4:+3560387 Msa0485760:CDS
ACTTCATGACAGAAATAATG+TGG 0.547790 3_4:-3561342 None:intergenic
CCACCGTACACAGGAAAAGC+GGG 0.548539 3_4:-3562439 None:intergenic
TAAGAAACCTAGTATATGAC+AGG 0.549198 3_4:-3560165 None:intergenic
CATTCTATGTCAGTACCAAA+TGG 0.549713 3_4:+3562089 Msa0485760:CDS
CACATTTGTAGATGAGGAGG+AGG 0.551676 3_4:+3561807 Msa0485760:CDS
ATTTGTAGATGAGGAGGAGG+AGG 0.553398 3_4:+3561810 Msa0485760:CDS
TGATGTCACATTTGTAGATG+AGG 0.555230 3_4:+3561801 Msa0485760:CDS
GGTATTAAACGTAAGAGAGA+TGG 0.556812 3_4:+3562137 Msa0485760:CDS
GGCAAGGAAGTTGTTAACAC+AGG 0.564053 3_4:-3561082 None:intergenic
AAGAGAGATGGTGACAAAGC+CGG 0.567634 3_4:+3562149 Msa0485760:CDS
ACAGAAATAATGTGGGAACA+TGG 0.568395 3_4:-3561334 None:intergenic
AGCAAGACATCCAGTTCGCA+TGG 0.572129 3_4:-3559967 None:intergenic
GCAAGATGGAACCATGGTGT+TGG 0.572620 3_4:+3562397 Msa0485760:CDS
AACCATGGTGTTGGGTATGT+TGG 0.578818 3_4:+3562406 Msa0485760:CDS
ATTATGAGGAAGCTTTGGAA+GGG 0.579688 3_4:+3561554 Msa0485760:CDS
CGATTACTTTGCAATAAAGA+GGG 0.582695 3_4:+3559897 Msa0485760:CDS
ATATAAATTGAAGCAAATGT+GGG 0.584676 3_4:+3560865 Msa0485760:CDS
GGAATGTTGTTATAATGTGA+TGG 0.585101 3_4:-3562517 None:intergenic
GGAGGACAAAGATGCAGAGG+AGG 0.585160 3_4:+3561885 Msa0485760:CDS
GATGTAGATGCCATGAACAA+AGG 0.588527 3_4:-3560691 None:intergenic
ATTTGGAGTCACAGAAGCAT+CGG 0.589265 3_4:-3562231 None:intergenic
GTACGGTGGGATTCCAAATG+TGG 0.589315 3_4:+3562453 Msa0485760:CDS
AAGATAAATGTACGTCGTGA+GGG 0.589836 3_4:+3561595 Msa0485760:CDS
AAACAATAGAGACATATAAG+TGG 0.592614 3_4:+3560552 Msa0485760:CDS
TGCATTCAATAGGCTTTGTG+AGG 0.594478 3_4:+3561510 Msa0485760:CDS
TGGTGTATCAAAGAATAAGT+GGG 0.597383 3_4:+3560832 Msa0485760:CDS
TGTTCTCGTTGTAAAAGGCA+TGG 0.598133 3_4:+3561742 Msa0485760:CDS
TATAACTACACTGATCATCA+AGG 0.599053 3_4:+3560239 Msa0485760:CDS
CTCCAAAGAAGGTCATAATG+AGG 0.600558 3_4:+3561450 Msa0485760:CDS
CAAGATAAATGTACGTCGTG+AGG 0.601675 3_4:+3561594 Msa0485760:CDS
ACTACACTGATCATCAAGGA+AGG 0.601680 3_4:+3560243 Msa0485760:CDS
CAGCGGTAAGTGCCCATCGG+CGG 0.602402 3_4:-3561489 None:intergenic
CACTATTTCCAACCTCAGCA+TGG 0.602509 3_4:-3561201 None:intergenic
TACGGTGGGATTCCAAATGT+GGG 0.603843 3_4:+3562454 Msa0485760:CDS
AACAATAGAGACATATAAGT+GGG 0.608859 3_4:+3560553 Msa0485760:CDS
CCCACCGTACACAGGAAAAG+CGG 0.608963 3_4:-3562440 None:intergenic
TTCACGCTCAAATCCAGGCA+AGG 0.610482 3_4:-3561098 None:intergenic
TGTCACATTTGTAGATGAGG+AGG 0.610653 3_4:+3561804 Msa0485760:CDS
CCAAAAGCGATTGTTACCGA+TGG 0.610779 3_4:+3560614 Msa0485760:CDS
TTGTAGAATGGTATGCCACA+TGG 0.614759 3_4:+3562370 Msa0485760:intron
ATCTGTCACTCACCATGCTG+AGG 0.616402 3_4:+3561189 Msa0485760:CDS
TGTCGTAAGGAAGGATGATG+TGG 0.617262 3_4:+3559842 Msa0485760:CDS
CGAGGAGGACAAAGATGCAG+AGG 0.621599 3_4:+3561882 Msa0485760:CDS
CTATTTGTTCCAGGATACAA+AGG 0.622428 3_4:-3562538 None:intergenic
TGTTGTTATAATGTGATGGA+AGG 0.624294 3_4:-3562513 None:intergenic
AGAGGATGAGAAGGAATACG+AGG 0.629568 3_4:+3561864 Msa0485760:CDS
CCTTCCTTACGACAAACCCA+TGG 0.631542 3_4:-3559833 None:intergenic
TTTACAGGATTCAACCACCA+TGG 0.632345 3_4:+3560491 Msa0485760:CDS
TTACCTTTACAGATGATGGT+CGG 0.632472 3_4:+3560351 Msa0485760:CDS
AAATGGTCGTTTCACCATGG+TGG 0.633387 3_4:-3560505 None:intergenic
AGAAAGACAGAGAATTGCAA+TGG 0.633911 3_4:+3559711 Msa0485760:CDS
CTTCATGACAGAAATAATGT+GGG 0.634223 3_4:-3561341 None:intergenic
CCAGATAATGCTAAACCCAA+AGG 0.637551 3_4:+3561664 Msa0485760:CDS
TTTGGAATCCCACCGTACAC+AGG 0.642001 3_4:-3562448 None:intergenic
TCTCGATAATGATACTGTAG+AGG 0.643267 3_4:+3559647 Msa0485760:CDS
TAAAGCTGTGTACTTTGCAG+TGG 0.643836 3_4:+3563078 Msa0485760:CDS
AGAACGACATCGATATGTGA+AGG 0.646884 3_4:+3560926 Msa0485760:CDS
ATGCAGCGGTAAGTGCCCAT+CGG 0.647794 3_4:-3561492 None:intergenic
TGTCATGAAGTATGAGAACA+TGG 0.649925 3_4:+3561354 Msa0485760:CDS
CTGAACAATTTGAGTCTGAG+TGG 0.653434 3_4:+3560789 Msa0485760:CDS
CTACACTGATCATCAAGGAA+GGG 0.653825 3_4:+3560244 Msa0485760:CDS
GGTGGGATTCCAAATGTGGG+TGG 0.655522 3_4:+3562457 Msa0485760:CDS
TGTGATGGAAGGATGTCTGC+CGG 0.655796 3_4:-3562502 None:intergenic
GGAAGGGTTAGAATTGAAGG+TGG 0.663188 3_4:+3560260 Msa0485760:CDS
ACAAAGCCTATTGAATGCAG+CGG 0.663816 3_4:-3561506 None:intergenic
TGATGTGGTAAAGGATCACG+AGG 0.665235 3_4:+3559857 Msa0485760:CDS
ATGGAAGGATGTCTGCCGGA+GGG 0.699279 3_4:-3562498 None:intergenic
AGCTATGGAGTTTAGCACAG+AGG 0.706449 3_4:+3559773 Msa0485760:CDS
CCGATGGAGATAAATCAATG+AGG 0.708608 3_4:+3560630 Msa0485760:CDS
GGATGAGAAGGAATACGAGG+AGG 0.709490 3_4:+3561867 Msa0485760:CDS
TACCAACATACCCAACACCA+TGG 0.713448 3_4:-3562408 None:intergenic
TTCCATCTTGCAAATCCATG+TGG 0.717728 3_4:-3562385 None:intergenic
AATTATGCAGAAAATCAACA+AGG 0.718950 3_4:-3560991 None:intergenic
GGATTTGCAAGATGGAACCA+TGG 0.726905 3_4:+3562391 Msa0485760:CDS
GATGGAAGGATGTCTGCCGG+AGG 0.734244 3_4:-3562499 None:intergenic
GATGTGGTAAAGGATCACGA+GGG 0.855257 3_4:+3559858 Msa0485760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATAAGTTTTAAAAAAT+TGG - chr3_4:3562575-3562594 None:intergenic 10.0%
!! AAATCTTGGATTTATAAAAA+AGG + chr3_4:3560211-3560230 Msa0485760:CDS 15.0%
!!! TGTATGATTTTTTCATTTTA+GGG - chr3_4:3561693-3561712 None:intergenic 15.0%
!!! TTGTATGATTTTTTCATTTT+AGG - chr3_4:3561694-3561713 None:intergenic 15.0%
!! TCAATATTAACTGTAATATT+TGG - chr3_4:3562251-3562270 None:intergenic 15.0%
!! AAATGATGATATAAAAGCTA+TGG + chr3_4:3559758-3559777 Msa0485760:CDS 20.0%
!!! TCGGTTAGAAAATATATTTT+GGG + chr3_4:3560370-3560389 Msa0485760:CDS 20.0%
!! ATATAAATTGAAGCAAATGT+GGG + chr3_4:3560865-3560884 Msa0485760:CDS 20.0%
!!! TTGGAAATAGTGTAATTTTT+AGG + chr3_4:3561212-3561231 Msa0485760:CDS 20.0%
!!! TGGAAATAGTGTAATTTTTA+GGG + chr3_4:3561213-3561232 Msa0485760:CDS 20.0%
!!! GTATGATTTTTTCATTTTAG+GGG - chr3_4:3561692-3561711 None:intergenic 20.0%
!!! AATGTCTATATTTGTTGTTT+TGG - chr3_4:3562204-3562223 None:intergenic 20.0%
! AGAAGAATGAAGATAGTAAT+AGG + chr3_4:3559940-3559959 Msa0485760:CDS 25.0%
! AATCTTCTGAATGAAATCAT+AGG - chr3_4:3560006-3560025 None:intergenic 25.0%
! ATGATTTCATTCAGAAGATT+TGG + chr3_4:3560006-3560025 Msa0485760:CDS 25.0%
! TTCATTTGATTCCGAATTAT+AGG + chr3_4:3560084-3560103 Msa0485760:CDS 25.0%
! TCACTCAATTTCCTATAATT+CGG - chr3_4:3560098-3560117 None:intergenic 25.0%
! TTATAGGAAATTGAGTGAAT+CGG + chr3_4:3560100-3560119 Msa0485760:CDS 25.0%
! TCATATACTAGGTTTCTTAA+TGG + chr3_4:3560169-3560188 Msa0485760:CDS 25.0%
! CATATACTAGGTTTCTTAAT+GGG + chr3_4:3560170-3560189 Msa0485760:CDS 25.0%
!! AAAGGTAAACTCTGAAAAAA+AGG - chr3_4:3560339-3560358 None:intergenic 25.0%
!! GTCGGTTAGAAAATATATTT+TGG + chr3_4:3560369-3560388 Msa0485760:CDS 25.0%
!! ATACCTGTTCTTTTTATAAG+TGG - chr3_4:3560453-3560472 None:intergenic 25.0%
! AATCCTGTAAAAATTACAAG+CGG - chr3_4:3560482-3560501 None:intergenic 25.0%
! AATTAAAGCACATGCAAAAA+TGG - chr3_4:3560525-3560544 None:intergenic 25.0%
! AAACAATAGAGACATATAAG+TGG + chr3_4:3560552-3560571 Msa0485760:CDS 25.0%
! AACAATAGAGACATATAAGT+GGG + chr3_4:3560553-3560572 Msa0485760:CDS 25.0%
! CATATAAATTGAAGCAAATG+TGG + chr3_4:3560864-3560883 Msa0485760:CDS 25.0%
! AATTATGCAGAAAATCAACA+AGG - chr3_4:3560994-3561013 None:intergenic 25.0%
!! TTTTGCAAATTAGACTTTCT+GGG - chr3_4:3561387-3561406 None:intergenic 25.0%
!! AAAGTCTAATTTGCAAAAGA+TGG + chr3_4:3561389-3561408 Msa0485760:CDS 25.0%
! ATGGTCAAAAACAATAAAGA+AGG + chr3_4:3561408-3561427 Msa0485760:CDS 25.0%
!!! ACTTTATTTCTTTTATGTCC+AGG + chr3_4:3562034-3562053 Msa0485760:intron 25.0%
!!! CATGATGTTGATAATATCTT+TGG + chr3_4:3562116-3562135 Msa0485760:CDS 25.0%
!!! ATGTTTTGATTGTTGTAGAA+TGG + chr3_4:3562358-3562377 Msa0485760:intron 25.0%
!!! ATTGATAGTTGATTTGCATT+AGG + chr3_4:3562877-3562896 Msa0485760:intron 25.0%
!!! TTGATAGTTGATTTGCATTA+GGG + chr3_4:3562878-3562897 Msa0485760:intron 25.0%
!!! TCTTGCTTTAAAGTTTAGAT+TGG + chr3_4:3562983-3563002 Msa0485760:intron 25.0%
GTAGAATTCAGTAGTGATAA+TGG + chr3_4:3559669-3559688 Msa0485760:CDS 30.0%
!!! TTCAGTAGTGATAATGGTTT+TGG + chr3_4:3559675-3559694 Msa0485760:CDS 30.0%
!!! GATAATGGTTTTGGTAATGA+TGG + chr3_4:3559684-3559703 Msa0485760:CDS 30.0%
CGATTACTTTGCAATAAAGA+GGG + chr3_4:3559897-3559916 Msa0485760:CDS 30.0%
GGAATCAAATGAACAAGATT+TGG - chr3_4:3560077-3560096 None:intergenic 30.0%
TAAGAAACCTAGTATATGAC+AGG - chr3_4:3560168-3560187 None:intergenic 30.0%
TATAACTACACTGATCATCA+AGG + chr3_4:3560239-3560258 Msa0485760:CDS 30.0%
!!! TGCTACTTTGAGTTATTTTC+AGG + chr3_4:3560292-3560311 Msa0485760:CDS 30.0%
!! GCTACTTTGAGTTATTTTCA+GGG + chr3_4:3560293-3560312 Msa0485760:CDS 30.0%
! AGGCTTGATTATGAATGTTT+TGG + chr3_4:3560407-3560426 Msa0485760:CDS 30.0%
! GGTGTTAAATGTGTTTTCAA+AGG + chr3_4:3560574-3560593 Msa0485760:CDS 30.0%
! TTTTGGATGTTTTTCGTACA+TGG - chr3_4:3560600-3560619 None:intergenic 30.0%
! TTGAACTCTTCTAAGAATCT+GGG - chr3_4:3560743-3560762 None:intergenic 30.0%
ATGGTGTATCAAAGAATAAG+TGG + chr3_4:3560831-3560850 Msa0485760:CDS 30.0%
TGGTGTATCAAAGAATAAGT+GGG + chr3_4:3560832-3560851 Msa0485760:CDS 30.0%
AAGGTGTGAATTCATTTATC+AGG + chr3_4:3560945-3560964 Msa0485760:CDS 30.0%
CTACAGACATAATGAATTGT+TGG + chr3_4:3561033-3561052 Msa0485760:CDS 30.0%
AAAGTTCCTAGAAGTCAAAA+AGG + chr3_4:3561144-3561163 Msa0485760:CDS 30.0%
!!! TTTTTAGGGTTAACGTTTAC+CGG + chr3_4:3561227-3561246 Msa0485760:CDS 30.0%
CTTCATGACAGAAATAATGT+GGG - chr3_4:3561344-3561363 None:intergenic 30.0%
ACTTCATGACAGAAATAATG+TGG - chr3_4:3561345-3561364 None:intergenic 30.0%
! CTTTTGCAAATTAGACTTTC+TGG - chr3_4:3561388-3561407 None:intergenic 30.0%
AGGTCATAATGAGGAAAAAA+TGG + chr3_4:3561459-3561478 Msa0485760:CDS 30.0%
! TAACAATGCCATTGATTATG+AGG + chr3_4:3561540-3561559 Msa0485760:CDS 30.0%
AAATGTCAATGGCAACAATA+AGG + chr3_4:3561618-3561637 Msa0485760:CDS 30.0%
AAGGTCAATAAATCTGTTGT+TGG + chr3_4:3561637-3561656 Msa0485760:CDS 30.0%
!! ATTTGGTACTGACATAGAAT+GGG - chr3_4:3562090-3562109 None:intergenic 30.0%
! TGTTGTTATAATGTGATGGA+AGG - chr3_4:3562516-3562535 None:intergenic 30.0%
GGAATGTTGTTATAATGTGA+TGG - chr3_4:3562520-3562539 None:intergenic 30.0%
TAACATACACTATTTGTTCC+AGG - chr3_4:3562550-3562569 None:intergenic 30.0%
!! TTCCTAGTTTGTTATTTGAC+AGG + chr3_4:3562815-3562834 Msa0485760:intron 30.0%
!!! GCAGTTAGTTTTTTCTAAGT+TGG + chr3_4:3563009-3563028 Msa0485760:CDS 30.0%
TCTCGATAATGATACTGTAG+AGG + chr3_4:3559647-3559666 Msa0485760:CDS 35.0%
AGAAAGACAGAGAATTGCAA+TGG + chr3_4:3559711-3559730 Msa0485760:CDS 35.0%
GCGATTACTTTGCAATAAAG+AGG + chr3_4:3559896-3559915 Msa0485760:CDS 35.0%
CTTAGTTCATGGTTGTGATT+GGG - chr3_4:3560050-3560069 None:intergenic 35.0%
ACTTAGTTCATGGTTGTGAT+TGG - chr3_4:3560051-3560070 None:intergenic 35.0%
GATTTGGATGACTTAGTTCA+TGG - chr3_4:3560061-3560080 None:intergenic 35.0%
TCGGATAAACAGATTGTTAG+TGG + chr3_4:3560119-3560138 Msa0485760:CDS 35.0%
GTAAGAACCTGTCATATACT+AGG + chr3_4:3560158-3560177 Msa0485760:CDS 35.0%
! GATTTTCATGTCCTCCTTTT+TGG - chr3_4:3560196-3560215 None:intergenic 35.0%
AAAGGAGGACATGAAAATCT+TGG + chr3_4:3560197-3560216 Msa0485760:CDS 35.0%
GAGTTTACCTTTACAGATGA+TGG + chr3_4:3560347-3560366 Msa0485760:CDS 35.0%
! TTACCTTTACAGATGATGGT+CGG + chr3_4:3560351-3560370 Msa0485760:CDS 35.0%
!!! TTATGAATGTTTTGGCGATG+TGG + chr3_4:3560415-3560434 Msa0485760:CDS 35.0%
ACGCCACTTATAAAAAGAAC+AGG + chr3_4:3560447-3560466 Msa0485760:CDS 35.0%
! AAGCCGCTTGTAATTTTTAC+AGG + chr3_4:3560476-3560495 Msa0485760:CDS 35.0%
!! CCTCATTGATTTATCTCCAT+CGG - chr3_4:3560633-3560652 None:intergenic 35.0%
GAGATGTATTTCCGAATTCA+AGG + chr3_4:3560663-3560682 Msa0485760:CDS 35.0%
! GTTGAACTCTTCTAAGAATC+TGG - chr3_4:3560744-3560763 None:intergenic 35.0%
AAGAGAGTTGTTGACAGTTA+TGG + chr3_4:3560812-3560831 Msa0485760:CDS 35.0%
TTCTAACTCCACACACAAAA+TGG - chr3_4:3560910-3560929 None:intergenic 35.0%
!!! TTATCGCCTTTTTGACTTCT+AGG - chr3_4:3561153-3561172 None:intergenic 35.0%
AGAAGTCAAAAAGGCGATAA+AGG + chr3_4:3561153-3561172 Msa0485760:CDS 35.0%
!!! TTTTTGGGTTCATCATGACA+AGG + chr3_4:3561261-3561280 Msa0485760:CDS 35.0%
ACAGAAATAATGTGGGAACA+TGG - chr3_4:3561337-3561356 None:intergenic 35.0%
TGTCATGAAGTATGAGAACA+TGG + chr3_4:3561354-3561373 Msa0485760:CDS 35.0%
TTCCTCATTATGACCTTCTT+TGG - chr3_4:3561455-3561474 None:intergenic 35.0%
CAAAGCTTCCTCATAATCAA+TGG - chr3_4:3561551-3561570 None:intergenic 35.0%
! CATTGATTATGAGGAAGCTT+TGG + chr3_4:3561549-3561568 Msa0485760:CDS 35.0%
!! ATTATGAGGAAGCTTTGGAA+GGG + chr3_4:3561554-3561573 Msa0485760:CDS 35.0%
AAGATAAATGTACGTCGTGA+GGG + chr3_4:3561595-3561614 Msa0485760:CDS 35.0%
ACATCAATTCCAGCAAGTAT+TGG - chr3_4:3561787-3561806 None:intergenic 35.0%
TGATGTCACATTTGTAGATG+AGG + chr3_4:3561801-3561820 Msa0485760:CDS 35.0%
GGATAAAGAAGAAGATGAGA+AGG + chr3_4:3561837-3561856 Msa0485760:CDS 35.0%
ACAGCAAATTCATCACAAGA+TGG - chr3_4:3562004-3562023 None:intergenic 35.0%
!! CATTTGGTACTGACATAGAA+TGG - chr3_4:3562091-3562110 None:intergenic 35.0%
CATTCTATGTCAGTACCAAA+TGG + chr3_4:3562089-3562108 Msa0485760:CDS 35.0%
TCAACATCATGTCTACCATT+TGG - chr3_4:3562107-3562126 None:intergenic 35.0%
GGTATTAAACGTAAGAGAGA+TGG + chr3_4:3562137-3562156 Msa0485760:CDS 35.0%
! AGAGTCTTGTGTTGAAAAAC+CGG - chr3_4:3562171-3562190 None:intergenic 35.0%
AACAACATTCCTTTGTATCC+TGG + chr3_4:3562529-3562548 Msa0485760:CDS 35.0%
CTATTTGTTCCAGGATACAA+AGG - chr3_4:3562541-3562560 None:intergenic 35.0%
ATTGTTTGTAAGTGCTCGTT+TGG + chr3_4:3562736-3562755 Msa0485760:intron 35.0%
GACCTGTCAAATAACAAACT+AGG - chr3_4:3562820-3562839 None:intergenic 35.0%
TGACAGGTCGAAGTAAAAAT+TGG + chr3_4:3562831-3562850 Msa0485760:intron 35.0%
TTTGCATTAGGGAGTTGAAT+TGG + chr3_4:3562889-3562908 Msa0485760:intron 35.0%
! TAGGGAGTTGAATTGGTAAT+TGG + chr3_4:3562896-3562915 Msa0485760:intron 35.0%
GGTAATTGGCAAACCAATTT+CGG + chr3_4:3562910-3562929 Msa0485760:intron 35.0%
ATGCTGAGTTGCTTCACTAT+AGG - chr3_4:3559628-3559647 None:intergenic 40.0%
AAGGAAGGATGATGTGGTAA+AGG + chr3_4:3559848-3559867 Msa0485760:CDS 40.0%
! GTTAGTGGTTTGCATTCTCA+AGG + chr3_4:3560134-3560153 Msa0485760:CDS 40.0%
! GGTTTCTTAATGGGCCAAAA+AGG + chr3_4:3560179-3560198 Msa0485760:CDS 40.0%
! TTCTTAATGGGCCAAAAAGG+AGG + chr3_4:3560182-3560201 Msa0485760:CDS 40.0%
ACTACACTGATCATCAAGGA+AGG + chr3_4:3560243-3560262 Msa0485760:CDS 40.0%
CTACACTGATCATCAAGGAA+GGG + chr3_4:3560244-3560263 Msa0485760:CDS 40.0%
CAAGGAAGGGTTAGAATTGA+AGG + chr3_4:3560257-3560276 Msa0485760:CDS 40.0%
TAACCGACCATCATCTGTAA+AGG - chr3_4:3560357-3560376 None:intergenic 40.0%
TTTACAGGATTCAACCACCA+TGG + chr3_4:3560491-3560510 Msa0485760:CDS 40.0%
CAAAAATGGTCGTTTCACCA+TGG - chr3_4:3560511-3560530 None:intergenic 40.0%
CCGATGGAGATAAATCAATG+AGG + chr3_4:3560630-3560649 Msa0485760:CDS 40.0%
GATGTAGATGCCATGAACAA+AGG - chr3_4:3560694-3560713 None:intergenic 40.0%
CACTCAGACTCAAATTGTTC+AGG - chr3_4:3560791-3560810 None:intergenic 40.0%
CTGAACAATTTGAGTCTGAG+TGG + chr3_4:3560789-3560808 Msa0485760:CDS 40.0%
AGAACGACATCGATATGTGA+AGG + chr3_4:3560926-3560945 Msa0485760:CDS 40.0%
TCATCATTTGCCTCCAAAGA+AGG + chr3_4:3561439-3561458 Msa0485760:CDS 40.0%
CTCATTATGACCTTCTTTGG+AGG - chr3_4:3561452-3561471 None:intergenic 40.0%
CTCCAAAGAAGGTCATAATG+AGG + chr3_4:3561450-3561469 Msa0485760:CDS 40.0%
ACAAAGCCTATTGAATGCAG+CGG - chr3_4:3561509-3561528 None:intergenic 40.0%
! TGCATTCAATAGGCTTTGTG+AGG + chr3_4:3561510-3561529 Msa0485760:CDS 40.0%
!! GATTATGAGGAAGCTTTGGA+AGG + chr3_4:3561553-3561572 Msa0485760:CDS 40.0%
CAAGATAAATGTACGTCGTG+AGG + chr3_4:3561594-3561613 Msa0485760:CDS 40.0%
! CCTTTGGGTTTAGCATTATC+TGG - chr3_4:3561667-3561686 None:intergenic 40.0%
CCAGATAATGCTAAACCCAA+AGG + chr3_4:3561664-3561683 Msa0485760:CDS 40.0%
!! TTCATTTTAGGGGCTCCTTT+GGG - chr3_4:3561682-3561701 None:intergenic 40.0%
!! TTTCATTTTAGGGGCTCCTT+TGG - chr3_4:3561683-3561702 None:intergenic 40.0%
GACGTTGTTCTCGTTGTAAA+AGG + chr3_4:3561737-3561756 Msa0485760:CDS 40.0%
TGTTCTCGTTGTAAAAGGCA+TGG + chr3_4:3561742-3561761 Msa0485760:CDS 40.0%
!! AGAAAGTGTCCAATACTTGC+TGG + chr3_4:3561775-3561794 Msa0485760:CDS 40.0%
TGTCACATTTGTAGATGAGG+AGG + chr3_4:3561804-3561823 Msa0485760:CDS 40.0%
AGAAGATGAGAAGGAGAAAG+AGG + chr3_4:3561846-3561865 Msa0485760:CDS 40.0%
GGGTTTCATCATTCATGTCA+TGG - chr3_4:3562070-3562089 None:intergenic 40.0%
! ATTTGGAGTCACAGAAGCAT+CGG - chr3_4:3562234-3562253 None:intergenic 40.0%
TTGTAGAATGGTATGCCACA+TGG + chr3_4:3562370-3562389 Msa0485760:intron 40.0%
TTCCATCTTGCAAATCCATG+TGG - chr3_4:3562388-3562407 None:intergenic 40.0%
GAAGTTAATCCACCCACATT+TGG - chr3_4:3562469-3562488 None:intergenic 40.0%
AACTTCTTCACAATTCCCTC+CGG + chr3_4:3562483-3562502 Msa0485760:CDS 40.0%
GGTCGAAGTAAAAATTGGAG+TGG + chr3_4:3562836-3562855 Msa0485760:intron 40.0%
AATTGGCAAACCAATTTCGG+TGG + chr3_4:3562913-3562932 Msa0485760:intron 40.0%
TAAAGCTGTGTACTTTGCAG+TGG + chr3_4:3563078-3563097 Msa0485760:CDS 40.0%
AGCTATGGAGTTTAGCACAG+AGG + chr3_4:3559773-3559792 Msa0485760:CDS 45.0%
AAAGCGTATGCTCGTTTCCA+TGG + chr3_4:3559816-3559835 Msa0485760:CDS 45.0%
AAGCGTATGCTCGTTTCCAT+GGG + chr3_4:3559817-3559836 Msa0485760:CDS 45.0%
GTTTCCATGGGTTTGTCGTA+AGG + chr3_4:3559829-3559848 Msa0485760:CDS 45.0%
TGTCGTAAGGAAGGATGATG+TGG + chr3_4:3559842-3559861 Msa0485760:CDS 45.0%
TGATGTGGTAAAGGATCACG+AGG + chr3_4:3559857-3559876 Msa0485760:CDS 45.0%
GATGTGGTAAAGGATCACGA+GGG + chr3_4:3559858-3559877 Msa0485760:CDS 45.0%
ACGAGGGAAAAATTGTTGCG+CGG + chr3_4:3559874-3559893 Msa0485760:CDS 45.0%
AATAGGCAAACCATGCGAAC+TGG + chr3_4:3559957-3559976 Msa0485760:CDS 45.0%
GGAAGGGTTAGAATTGAAGG+TGG + chr3_4:3560260-3560279 Msa0485760:CDS 45.0%
AAATGGTCGTTTCACCATGG+TGG - chr3_4:3560508-3560527 None:intergenic 45.0%
! CCATCGGTAACAATCGCTTT+TGG - chr3_4:3560617-3560636 None:intergenic 45.0%
CCAAAAGCGATTGTTACCGA+TGG + chr3_4:3560614-3560633 Msa0485760:CDS 45.0%
CAAAGGCGATGCCTTGAATT+CGG - chr3_4:3560677-3560696 None:intergenic 45.0%
! ATGCGAGACCATTTTGTGTG+TGG + chr3_4:3560899-3560918 Msa0485760:CDS 45.0%
GGCAAGGAAGTTGTTAACAC+AGG - chr3_4:3561085-3561104 None:intergenic 45.0%
GTGTTAACAACTTCCTTGCC+TGG + chr3_4:3561085-3561104 Msa0485760:CDS 45.0%
CACTATTTCCAACCTCAGCA+TGG - chr3_4:3561204-3561223 None:intergenic 45.0%
! ACCGGAAAGATGCAGCTTTT+TGG + chr3_4:3561245-3561264 Msa0485760:CDS 45.0%
CCCAAAAAGCTGCATCTTTC+CGG - chr3_4:3561249-3561268 None:intergenic 45.0%
! CCGGAAAGATGCAGCTTTTT+GGG + chr3_4:3561246-3561265 Msa0485760:CDS 45.0%
CACTTACCGCTGCATTCAAT+AGG + chr3_4:3561500-3561519 Msa0485760:CDS 45.0%
CACATTTGTAGATGAGGAGG+AGG + chr3_4:3561807-3561826 Msa0485760:CDS 45.0%
ATTTGTAGATGAGGAGGAGG+AGG + chr3_4:3561810-3561829 Msa0485760:CDS 45.0%
GAAGGAGAAAGAGGATGAGA+AGG + chr3_4:3561855-3561874 Msa0485760:CDS 45.0%
AGAGGATGAGAAGGAATACG+AGG + chr3_4:3561864-3561883 Msa0485760:CDS 45.0%
TGTCATGGCTTATAGACACC+TGG - chr3_4:3562055-3562074 None:intergenic 45.0%
AAGAGAGATGGTGACAAAGC+CGG + chr3_4:3562149-3562168 Msa0485760:CDS 45.0%
TGCCACATGGATTTGCAAGA+TGG + chr3_4:3562383-3562402 Msa0485760:CDS 45.0%
GGATTTGCAAGATGGAACCA+TGG + chr3_4:3562391-3562410 Msa0485760:CDS 45.0%
CAAGATGGAACCATGGTGTT+GGG + chr3_4:3562398-3562417 Msa0485760:CDS 45.0%
! AACCATGGTGTTGGGTATGT+TGG + chr3_4:3562406-3562425 Msa0485760:CDS 45.0%
TACCAACATACCCAACACCA+TGG - chr3_4:3562411-3562430 None:intergenic 45.0%
!! TTTCCCGCTTTTCCTGTGTA+CGG + chr3_4:3562436-3562455 Msa0485760:CDS 45.0%
TACGGTGGGATTCCAAATGT+GGG + chr3_4:3562454-3562473 Msa0485760:CDS 45.0%
ACAGTTTACGAGCGTGTTGA+AGG + chr3_4:3562648-3562667 Msa0485760:intron 45.0%
CCTTCCTTACGACAAACCCA+TGG - chr3_4:3559836-3559855 None:intergenic 50.0%
CCATGGGTTTGTCGTAAGGA+AGG + chr3_4:3559833-3559852 Msa0485760:CDS 50.0%
AGCAAGACATCCAGTTCGCA+TGG - chr3_4:3559970-3559989 None:intergenic 50.0%
TTTGGGCAGATTCTGCAAGC+AGG + chr3_4:3560387-3560406 Msa0485760:CDS 50.0%
!! CAAGGCATCGCCTTTGTTCA+TGG + chr3_4:3560681-3560700 Msa0485760:CDS 50.0%
TTCACGCTCAAATCCAGGCA+AGG - chr3_4:3561101-3561120 None:intergenic 50.0%
GAAGCTTCACGCTCAAATCC+AGG - chr3_4:3561106-3561125 None:intergenic 50.0%
ATCTGTCACTCACCATGCTG+AGG + chr3_4:3561189-3561208 Msa0485760:CDS 50.0%
AAATGGTCATGTTCCGCCGA+TGG + chr3_4:3561476-3561495 Msa0485760:CDS 50.0%
AATGGTCATGTTCCGCCGAT+GGG + chr3_4:3561477-3561496 Msa0485760:CDS 50.0%
CGTCGTGAGGGAAATGTCAA+TGG + chr3_4:3561607-3561626 Msa0485760:CDS 50.0%
AGATGAGGAGGAGGAGGAAA+AGG + chr3_4:3561816-3561835 Msa0485760:CDS 50.0%
GGATGAGAAGGAATACGAGG+AGG + chr3_4:3561867-3561886 Msa0485760:CDS 50.0%
GCAAGATGGAACCATGGTGT+TGG + chr3_4:3562397-3562416 Msa0485760:CDS 50.0%
! TTTGGAATCCCACCGTACAC+AGG - chr3_4:3562451-3562470 None:intergenic 50.0%
GTACGGTGGGATTCCAAATG+TGG + chr3_4:3562453-3562472 Msa0485760:CDS 50.0%
! TGTGATGGAAGGATGTCTGC+CGG - chr3_4:3562505-3562524 None:intergenic 50.0%
TACGAGCGTGTTGAAGGACA+TGG + chr3_4:3562654-3562673 Msa0485760:intron 50.0%
TGCTAGAACGCCACCGAAAT+TGG - chr3_4:3562926-3562945 None:intergenic 50.0%
GTCACTCACCATGCTGAGGT+TGG + chr3_4:3561193-3561212 Msa0485760:CDS 55.0%
ATGCAGCGGTAAGTGCCCAT+CGG - chr3_4:3561495-3561514 None:intergenic 55.0%
CGAGGAGGACAAAGATGCAG+AGG + chr3_4:3561882-3561901 Msa0485760:CDS 55.0%
GGAGGACAAAGATGCAGAGG+AGG + chr3_4:3561885-3561904 Msa0485760:CDS 55.0%
GGACAAAGATGCAGAGGAGG+AGG + chr3_4:3561888-3561907 Msa0485760:CDS 55.0%
CAAAGATGCAGAGGAGGAGG+TGG + chr3_4:3561891-3561910 Msa0485760:CDS 55.0%
CCACCGTACACAGGAAAAGC+GGG - chr3_4:3562442-3562461 None:intergenic 55.0%
CCCACCGTACACAGGAAAAG+CGG - chr3_4:3562443-3562462 None:intergenic 55.0%
!! CCGCTTTTCCTGTGTACGGT+GGG + chr3_4:3562440-3562459 Msa0485760:CDS 55.0%
GGTGGGATTCCAAATGTGGG+TGG + chr3_4:3562457-3562476 Msa0485760:CDS 55.0%
ATGGAAGGATGTCTGCCGGA+GGG - chr3_4:3562501-3562520 None:intergenic 55.0%
AGATGCAGAGGAGGAGGTGG+AGG + chr3_4:3561894-3561913 Msa0485760:CDS 60.0%
!! CCCGCTTTTCCTGTGTACGG+TGG + chr3_4:3562439-3562458 Msa0485760:CDS 60.0%
GATGGAAGGATGTCTGCCGG+AGG - chr3_4:3562502-3562521 None:intergenic 60.0%
CAGCGGTAAGTGCCCATCGG+CGG - chr3_4:3561492-3561511 None:intergenic 65.0%
TGCAGAGGAGGAGGTGGAGG+AGG + chr3_4:3561897-3561916 Msa0485760:CDS 65.0%
AGAGGAGGAGGTGGAGGAGG+AGG + chr3_4:3561900-3561919 Msa0485760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 3559618 3563105 3559618 ID=Msa0485760;Name=Msa0485760
chr3_4 mRNA 3559618 3563105 3559618 ID=Msa0485760-mRNA-1;Parent=Msa0485760;Name=Msa0485760-mRNA-1;_AED=0.28;_eAED=0.30;_QI=0|0|0|0.25|1|1|4|0|953
chr3_4 exon 3559618 3561969 3559618 ID=Msa0485760-mRNA-1:exon:1306;Parent=Msa0485760-mRNA-1
chr3_4 exon 3562056 3562274 3562056 ID=Msa0485760-mRNA-1:exon:1307;Parent=Msa0485760-mRNA-1
chr3_4 exon 3562376 3562561 3562376 ID=Msa0485760-mRNA-1:exon:1308;Parent=Msa0485760-mRNA-1
chr3_4 exon 3563001 3563105 3563001 ID=Msa0485760-mRNA-1:exon:1309;Parent=Msa0485760-mRNA-1
chr3_4 CDS 3559618 3561969 3559618 ID=Msa0485760-mRNA-1:cds;Parent=Msa0485760-mRNA-1
chr3_4 CDS 3562056 3562274 3562056 ID=Msa0485760-mRNA-1:cds;Parent=Msa0485760-mRNA-1
chr3_4 CDS 3562376 3562561 3562376 ID=Msa0485760-mRNA-1:cds;Parent=Msa0485760-mRNA-1
chr3_4 CDS 3563001 3563105 3563001 ID=Msa0485760-mRNA-1:cds;Parent=Msa0485760-mRNA-1
Gene Sequence

>Msa0485760

ATGTCAGCCTATAGTGAAGCAACTCAGCATCTCGATAATGATACTGTAGAGGTAGAATTCAGTAGTGATAATGGTTTTGGTAATGATGGAGATAGAAAGACAGAGAATTGCAATGGTCAGAAAAGTTTAAGTGAAATTACAAATGATGATATAAAAGCTATGGAGTTTAGCACAGAGGAAGAAGCTATACAATTTTACAAAGCGTATGCTCGTTTCCATGGGTTTGTCGTAAGGAAGGATGATGTGGTAAAGGATCACGAGGGAAAAATTGTTGCGCGGCGATTACTTTGCAATAAAGAGGGAAAGAGTGAAACTAAAAATAAGAAGAATGAAGATAGTAATAGGCAAACCATGCGAACTGGATGTCTTGCTAGACTTCGAGTAGCCTATGATTTCATTCAGAAGATTTGGAAAGTTACTAATTTTGAGCCCAATCACAACCATGAACTAAGTCATCCAAATCTTGTTCATTTGATTCCGAATTATAGGAAATTGAGTGAATCGGATAAACAGATTGTTAGTGGTTTGCATTCTCAAGGTGTAAGAACCTGTCATATACTAGGTTTCTTAATGGGCCAAAAAGGAGGACATGAAAATCTTGGATTTATAAAAAAGGATCTATATAACTACACTGATCATCAAGGAAGGGTTAGAATTGAAGGTGGTGATACTTTTGCTACTTTGAGTTATTTTCAGGGTAAAGCTGATAATGATTCGACCTTTTTTTCAGAGTTTACCTTTACAGATGATGGTCGGTTAGAAAATATATTTTGGGCAGATTCTGCAAGCAGGCTTGATTATGAATGTTTTGGCGATGTGGTTCTCTTTGACGCCACTTATAAAAAGAACAGGTATGACAAGCCGCTTGTAATTTTTACAGGATTCAACCACCATGGTGAAACGACCATTTTTGCATGTGCTTTAATTTCTGATGAAACAATAGAGACATATAAGTGGGTGTTAAATGTGTTTTCAAAGGCCATGTACGAAAAACATCCAAAAGCGATTGTTACCGATGGAGATAAATCAATGAGGAAAGCTATTAGAGATGTATTTCCGAATTCAAGGCATCGCCTTTGTTCATGGCATCTACATCAAAATGCTTGTGTGCATGTAAAAGATCCCAGATTCTTAGAAGAGTTCAACAAACTCATGTATTCTAATTACACACCTGAACAATTTGAGTCTGAGTGGAAGAGAGTTGTTGACAGTTATGGTGTATCAAAGAATAAGTGGGTGATTAAAACATATAAATTGAAGCAAATGTGGGCAAGTTCATACATGCGAGACCATTTTGTGTGTGGAGTTAGAACGACATCGATATGTGAAGGTGTGAATTCATTTATCAGGAAGTATGTTCAAAACAAAAATAGCCTTGTTGATTTTCTGCATAATTTTGAAAGAGCTGTCAAAGACTACAGACATAATGAATTGTTGGCTGATTTCAAATCATTTTATTATAAACCTGTGTTAACAACTTCCTTGCCTGGATTTGAGCGTGAAGCTTCAGAAATATTCACTTTTAAAAAGTTCCTAGAAGTCAAAAAGGCGATAAAGGATGTTGCTGCAGAATCTGTCACTCACCATGCTGAGGTTGGAAATAGTGTAATTTTTAGGGTTAACGTTTACCGGAAAGATGCAGCTTTTTGGGTTCATCATGACAAGGAGCATAATAAATTTATATGTGATTGTAGACGATTTGAACGCGAAAGACTTCCATGTTCCCACATTATTTCTGTCATGAAGTATGAGAACATGGATGCTTTCCCAGAAAGTCTAATTTGCAAAAGATGGTCAAAAACAATAAAGAAGGATCACATCTCATCATTTGCCTCCAAAGAAGGTCATAATGAGGAAAAAATGGTCATGTTCCGCCGATGGGCACTTACCGCTGCATTCAATAGGCTTTGTGAGGTGTCTTGTAACAATGCCATTGATTATGAGGAAGCTTTGGAAGGGATTAATAGTTTGTGTGACAAGATAAATGTACGTCGTGAGGGAAATGTCAATGGCAACAATAAGGTCAATAAATCTGTTGTTGGAGATCCAGATAATGCTAAACCCAAAGGAGCCCCTAAAATGAAAAAATCATACAAAAATCAGAGACACGTGAAAGAAAGACGTTGTTCTCGTTGTAAAAGGCATGGTCACACAATCAGAAAGTGTCCAATACTTGCTGGAATTGATGTCACATTTGTAGATGAGGAGGAGGAGGAAAAGGATAAAGAAGAAGATGAGAAGGAGAAAGAGGATGAGAAGGAATACGAGGAGGACAAAGATGCAGAGGAGGAGGTGGAGGAGGAGGAAGATGATACACATGTTGAATCTGAATATGAATCAAATCGTTTAAATGTGTCTATAAGCCATGACATGAATGATGAAACCCATTCTATGTCAGTACCAAATGGTAGACATGATGTTGATAATATCTTTGGTATTAAACGTAAGAGAGATGGTGACAAAGCCGGTTTTTCAACACAAGACTCTGCAGCGAATACCAAAACAACAAATATAGACATTAGAAAGACCGATGCTTCTGTGACTCCAAATATTACAGTTAATATTGAAAACAATGGTATGCCACATGGATTTGCAAGATGGAACCATGGTGTTGGGTATGTTGGTAACTATTTTCCCGCTTTTCCTGTGTACGGTGGGATTCCAAATGTGGGTGGATTAACTTCTTCACAATTCCCTCCGGCAGACATCCTTCCATCACATTATAACAACATTCCTTTGTATCCTGGAACAAATAGTATTGGATTGCAGTTAGTTTTTTCTAAGTTGGAAGCTGAAAACTTGTCAACTAACAAGCGATATGTTAGTGATGATGATAAAGCTGTGTACTTTGCAGTGGTTTAG
Protein sequence

>Msa0485760

MSAYSEATQHLDNDTVEVEFSSDNGFGNDGDRKTENCNGQKSLSEITNDDIKAMEFSTEEEAIQFYKAYARFHGFVVRKDDVVKDHEGKIVARRLLCNKEGKSETKNKKNEDSNRQTMRTGCLARLRVAYDFIQKIWKVTNFEPNHNHELSHPNLVHLIPNYRKLSESDKQIVSGLHSQGVRTCHILGFLMGQKGGHENLGFIKKDLYNYTDHQGRVRIEGGDTFATLSYFQGKADNDSTFFSEFTFTDDGRLENIFWADSASRLDYECFGDVVLFDATYKKNRYDKPLVIFTGFNHHGETTIFACALISDETIETYKWVLNVFSKAMYEKHPKAIVTDGDKSMRKAIRDVFPNSRHRLCSWHLHQNACVHVKDPRFLEEFNKLMYSNYTPEQFESEWKRVVDSYGVSKNKWVIKTYKLKQMWASSYMRDHFVCGVRTTSICEGVNSFIRKYVQNKNSLVDFLHNFERAVKDYRHNELLADFKSFYYKPVLTTSLPGFEREASEIFTFKKFLEVKKAIKDVAAESVTHHAEVGNSVIFRVNVYRKDAAFWVHHDKEHNKFICDCRRFERERLPCSHIISVMKYENMDAFPESLICKRWSKTIKKDHISSFASKEGHNEEKMVMFRRWALTAAFNRLCEVSCNNAIDYEEALEGINSLCDKINVRREGNVNGNNKVNKSVVGDPDNAKPKGAPKMKKSYKNQRHVKERRCSRCKRHGHTIRKCPILAGIDVTFVDEEEEEKDKEEDEKEKEDEKEYEEDKDAEEEVEEEEDDTHVESEYESNRLNVSISHDMNDETHSMSVPNGRHDVDNIFGIKRKRDGDKAGFSTQDSAANTKTTNIDIRKTDASVTPNITVNIENNGMPHGFARWNHGVGYVGNYFPAFPVYGGIPNVGGLTSSQFPPADILPSHYNNIPLYPGTNSIGLQLVFSKLEAENLSTNKRYVSDDDKAVYFAVV*