AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0158850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0158850 MtrunA17_Chr1g0171131 98.972 389 4 0 9 397 1 389 0.0 808
Msa0158850 MtrunA17_Chr2g0323981 56.958 309 129 3 78 385 63 368 1.01e-124 365
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0158850 AT5G08415.1 76.804 388 81 5 9 388 2 388 0.0 587
Msa0158850 AT2G20860.2 60.627 287 112 1 100 385 76 362 3.59e-124 363
Msa0158850 AT2G20860.3 60.627 287 112 1 100 385 76 362 3.59e-124 363
Msa0158850 AT2G20860.1 60.627 287 112 1 100 385 76 362 3.59e-124 363

Find 131 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATATGTGATAATAAATT+AGG 0.126617 1_4:-28743421 None:intergenic
CGCCTGAGAAGTTTGATTTC+TGG 0.184593 1_4:+28742807 Msa0158850:CDS
TTTGATTTCTGGAAAGAATA+TGG 0.216343 1_4:+28742818 Msa0158850:CDS
CAAGTTTATCACACCTAAAA+AGG 0.216919 1_4:-28737866 Msa0158840:intron
AGTCAGAATATCCACATTTA+TGG 0.217980 1_4:-28742572 None:intergenic
CAATGAGCCATCTGCATTCT+TGG 0.241424 1_4:-28743167 None:intergenic
ACAGGTGTCTTCCATTTCTT+AGG 0.266590 1_4:+28743293 Msa0158850:three_prime_UTR
GACTCTTGGTCAGTATTTGC+AGG 0.274453 1_4:+28742591 Msa0158850:CDS
AATTCTTTACTGTGTGATTA+TGG 0.275813 1_4:+28743194 Msa0158850:exon
GGGCCTTACCCAGGTGGGTT+GGG 0.304565 1_4:+28738430 Msa0158850:CDS
CTCTGCCCTTGTCAACAATT+AGG 0.304912 1_4:-28738063 Msa0158840:five_prime_UTR
CAATATGTGATAATAAATTA+GGG 0.308090 1_4:-28743420 None:intergenic
CACGCAGGTTTCTTCACATT+CGG 0.309322 1_4:-28738472 None:intergenic
AAACACTCGACCATGATTTC+AGG 0.310515 1_4:-28741525 None:intergenic
AAAAGAACCTCTCCAATATT+GGG 0.313961 1_4:-28738592 None:intergenic
TCCATAGGATCGGGAGGAGC+TGG 0.334124 1_4:-28740635 None:intergenic
GAAGCACAGTGCCCCAATAT+TGG 0.348726 1_4:+28738580 Msa0158850:CDS
TGCCAAGGCCATTGCCAGTT+GGG 0.349401 1_4:+28740670 Msa0158850:CDS
TTGAATCGAAGATGAGTAAT+GGG 0.358990 1_4:-28737981 Msa0158840:exon
TGTAATTAATACTGGTGAAA+AGG 0.381531 1_4:-28738007 Msa0158840:five_prime_UTR
AGAAAGATGCTTAGCTATAC+AGG 0.407634 1_4:+28743275 Msa0158850:three_prime_UTR
TTCCAGAAATCAAACTTCTC+AGG 0.413110 1_4:-28742809 None:intergenic
CCCAGCTCCTCCCGATCCTA+TGG 0.413916 1_4:+28740634 Msa0158850:CDS
CTGCTACAATCATGGTTCTC+GGG 0.418545 1_4:+28740561 Msa0158850:CDS
TGGGCCTTACCCAGGTGGGT+TGG 0.425070 1_4:+28738429 Msa0158850:CDS
TCCTCCCGATCCTATGGAAC+CGG 0.429656 1_4:+28740640 Msa0158850:CDS
TGGGTTTCTGCTGGTCTTCA+CGG 0.441308 1_4:-28740615 None:intergenic
TGAAGGAGAAAGAACAAGGT+TGG 0.445441 1_4:-28738240 Msa0158840:five_prime_UTR
ATGAAATGGGTTTGAGGTGA+AGG 0.445727 1_4:-28738257 Msa0158840:five_prime_UTR
GAGTAATGGGGAGGAAGAGA+AGG 0.448509 1_4:-28737968 Msa0158840:CDS
ATATCTTTGCTCCTAAGAAA+TGG 0.451773 1_4:-28743304 None:intergenic
GCCAAGGCCATTGCCAGTTG+GGG 0.452302 1_4:+28740671 Msa0158850:CDS
TTTCGTTATCATACCCTCCT+TGG 0.464711 1_4:-28742482 None:intergenic
TTCGGGTCTCTTCCTGTGAA+TGG 0.466929 1_4:-28738454 None:intergenic
GGGAGGAGCTGGGTTTCTGC+TGG 0.467982 1_4:-28740624 None:intergenic
AATGTGGATATTCTGACTCT+TGG 0.468083 1_4:+28742577 Msa0158850:CDS
TACGATCTTCATACCGAGCT+GGG 0.475429 1_4:+28743110 Msa0158850:CDS
ACTGCTACAATCATGGTTCT+CGG 0.478925 1_4:+28740560 Msa0158850:CDS
GAATATCAAACCTGAAATCA+TGG 0.479488 1_4:+28741515 Msa0158850:intron
AGTTGTTGTTGAAACAACTT+TGG 0.479559 1_4:-28738152 Msa0158840:five_prime_UTR
ACGCAGGTTTCTTCACATTC+GGG 0.479652 1_4:-28738471 None:intergenic
ACGAAATCTTCGATAATGTT+AGG 0.479900 1_4:+28742499 Msa0158850:CDS
TCTTCGATAATGTTAGGCCT+TGG 0.480956 1_4:+28742505 Msa0158850:CDS
CGATGCAACTTACCCAGCCC+TGG 0.481963 1_4:-28741664 None:intergenic
GATATACCTGATGGAGGAAG+TGG 0.485272 1_4:+28741350 Msa0158850:CDS
GGTGGGTTGGGTCCATTCAC+AGG 0.486805 1_4:+28738442 Msa0158850:CDS
TTTGAATCGAAGATGAGTAA+TGG 0.487757 1_4:-28737982 Msa0158840:exon
AAATGCCCACTTCCTCCATC+AGG 0.490145 1_4:-28741356 None:intergenic
GTGAATGGACCCAACCCACC+TGG 0.491090 1_4:-28738439 None:intergenic
TTCGAAAATCTTTCACCTTG+AGG 0.492357 1_4:-28738511 None:intergenic
CCATAGGATCGGGAGGAGCT+GGG 0.495035 1_4:-28740634 None:intergenic
ATGGAATCAGAGAACAAGAA+TGG 0.495894 1_4:+28738409 Msa0158850:CDS
GGACCCAACCCACCTGGGTA+AGG 0.503689 1_4:-28738433 None:intergenic
ATTGTTAGAGATCCCAGGGC+TGG 0.515928 1_4:+28741651 Msa0158850:CDS
TTGTTAGAGATCCCAGGGCT+GGG 0.517720 1_4:+28741652 Msa0158850:CDS
AGAGCTTACCAGTGGGCCGC+TGG 0.519862 1_4:-28742867 None:intergenic
AACGAATTGTTAGAGATCCC+AGG 0.523239 1_4:+28741646 Msa0158850:CDS
CTCTTTGACTGTCAAGTGCA+AGG 0.525409 1_4:-28742777 None:intergenic
GAGAGGATATCTAGATAAGC+AGG 0.526274 1_4:+28737888 Msa0158850:five_prime_UTR
TATTGCAACTGCTACAATCA+TGG 0.529575 1_4:+28740553 Msa0158850:CDS
CGAGGTGAAGGAAACAATGA+TGG 0.533071 1_4:+28742540 Msa0158850:CDS
GTCTGCGATGTCGAAGCTGA+TGG 0.534720 1_4:+28738390 Msa0158850:CDS
TGTTGGAATGGAGGCGATGA+TGG 0.537100 1_4:+28740530 Msa0158850:CDS
CTGCCAAGGCCATTGCCAGT+TGG 0.540666 1_4:+28740669 Msa0158850:CDS
CGAATCTGATGACGAGGTGA+AGG 0.542553 1_4:+28742528 Msa0158850:CDS
TCCATCACTTTCACATTCCG+AGG 0.544757 1_4:+28738333 Msa0158850:CDS
TGGAATCAGAGAACAAGAAT+GGG 0.546737 1_4:+28738410 Msa0158850:CDS
CCAAGGCCATTGCCAGTTGG+GGG 0.548808 1_4:+28740672 Msa0158850:CDS
TTATGTAGCCAGCGGCCCAC+TGG 0.550759 1_4:+28742859 Msa0158850:CDS
GTACGATCTTCATACCGAGC+TGG 0.551111 1_4:+28743109 Msa0158850:CDS
TGGGATCTCTAACAATTCGT+TGG 0.555950 1_4:-28741644 None:intergenic
AGTGTGAAAGTAAAAGAGGA+AGG 0.560114 1_4:-28738292 Msa0158840:five_prime_UTR
CATAAACCTAATTGTTGACA+AGG 0.562774 1_4:+28738057 Msa0158850:five_prime_UTR
ACCGACAGAGGTTGTTGTTG+CGG 0.563421 1_4:-28738367 Msa0158840:five_prime_UTR
TCTGAAGGCTGTAGAAACTC+TGG 0.568599 1_4:+28741569 Msa0158850:CDS
GGAAAAGAAAATGTGTTCAG+TGG 0.570690 1_4:-28737947 Msa0158840:CDS
TCGAAGTGTGAAAGTAAAAG+AGG 0.570707 1_4:-28738296 Msa0158840:five_prime_UTR
TGCTACAATCATGGTTCTCG+GGG 0.572687 1_4:+28740562 Msa0158850:CDS
TTGCAGATATGAACAAAGCT+TGG 0.574741 1_4:+28742435 Msa0158850:intron
AACAAGAATGGGCCTTACCC+AGG 0.576035 1_4:+28738421 Msa0158850:CDS
ACAACATTGAAACAGTCAAA+CGG 0.578555 1_4:+28741619 Msa0158850:CDS
GAGGTGAAGGAGAAAGAACA+AGG 0.580263 1_4:-28738244 Msa0158840:five_prime_UTR
ACCTCGGAATGTGAAAGTGA+TGG 0.584506 1_4:-28738334 Msa0158840:five_prime_UTR
AAAGAATATGGAGAGTCTAT+CGG 0.587091 1_4:+28742830 Msa0158850:CDS
GAAAGTGCCAAGAATGCAGA+TGG 0.588315 1_4:+28743160 Msa0158850:CDS
ACTGTCAAGTGCAAGGGAGT+CGG 0.589251 1_4:-28742770 None:intergenic
AAAGTGATGGATCGTTGGCT+TGG 0.591295 1_4:-28738321 Msa0158840:five_prime_UTR
ACCGCAACAACAACCTCTGT+CGG 0.591855 1_4:+28738366 Msa0158850:CDS
ACAAACTGTGAAAGCTATGA+AGG 0.594954 1_4:+28741382 Msa0158850:CDS
TCTGATGGACAGTGTTGGAA+TGG 0.595206 1_4:+28740518 Msa0158850:intron
TGAATCGAAGATGAGTAATG+GGG 0.603286 1_4:-28737980 Msa0158840:exon
GCACAAAGAGCTCCCCAGCT+CGG 0.605623 1_4:-28743123 None:intergenic
ATCGAAGATGAGTAATGGGG+AGG 0.607489 1_4:-28737977 Msa0158840:exon
GATGCAACTTACCCAGCCCT+GGG 0.607997 1_4:-28741663 None:intergenic
TTAGGTGTGATAAACTTGAG+AGG 0.608700 1_4:+28737871 Msa0158850:five_prime_UTR
GAAGCTTAACACTGTTTGTG+AGG 0.608702 1_4:+28738558 Msa0158850:CDS
GTAGAAACTCTGGTTCACTC+AGG 0.613460 1_4:+28741579 Msa0158850:CDS
ACGAATTGTTAGAGATCCCA+GGG 0.616103 1_4:+28741647 Msa0158850:CDS
AAAGAACCTCTCCAATATTG+GGG 0.618799 1_4:-28738591 None:intergenic
CTCGGGGATACATGCACTCG+CGG 0.619388 1_4:+28740578 Msa0158850:CDS
CGCGATGATATACCTGATGG+AGG 0.619579 1_4:+28741344 Msa0158850:CDS
TCTTTGACTGTCAAGTGCAA+GGG 0.619715 1_4:-28742776 None:intergenic
TCCGGTTCCATAGGATCGGG+AGG 0.619826 1_4:-28740641 None:intergenic
ATATAGCAAGCAGCAAGAGA+TGG 0.620946 1_4:+28743219 Msa0158850:three_prime_UTR
AAACCATGCAAAACAAACCA+AGG 0.621031 1_4:+28742465 Msa0158850:CDS
TTATATTGTCATAACAAGTG+TGG 0.621991 1_4:+28741319 Msa0158850:CDS
CAGATCACCCCGAAAATCAG+AGG 0.624181 1_4:-28741550 None:intergenic
TGAATGGACCCAACCCACCT+GGG 0.628085 1_4:-28738438 None:intergenic
AGAATGGGCCTTACCCAGGT+GGG 0.636326 1_4:+28738425 Msa0158850:CDS
CCTTGGCGAATCTGATGACG+AGG 0.637136 1_4:+28742522 Msa0158850:CDS
TTGAGACAGAAAGCTCCTCA+AGG 0.644524 1_4:+28738496 Msa0158850:CDS
GATGGACAGTGTTGGAATGG+AGG 0.645354 1_4:+28740521 Msa0158850:intron
CATGCAAAACAAACCAAGGA+GGG 0.645408 1_4:+28742469 Msa0158850:CDS
ATGTGAAAGTGATGGATCGT+TGG 0.646000 1_4:-28738326 Msa0158840:five_prime_UTR
GGAACCGGAAAATACTGCCA+AGG 0.648991 1_4:+28740655 Msa0158850:CDS
CCTCGTCATCAGATTCGCCA+AGG 0.651966 1_4:-28742522 None:intergenic
AAGAATGGGCCTTACCCAGG+TGG 0.653131 1_4:+28738424 Msa0158850:CDS
GACCGCGATGATATACCTGA+TGG 0.655366 1_4:+28741341 Msa0158850:CDS
GCTTTCTGTCTCAACCACGC+AGG 0.658875 1_4:-28738487 None:intergenic
GGAGCTCTTTGTGCAGACAA+TGG 0.661202 1_4:+28743132 Msa0158850:CDS
ATATACCTGATGGAGGAAGT+GGG 0.662040 1_4:+28741351 Msa0158850:CDS
GGATTTAAGAGCCATAAATG+TGG 0.663356 1_4:+28742561 Msa0158850:CDS
ACGATCTTCATACCGAGCTG+GGG 0.665611 1_4:+28743111 Msa0158850:CDS
CAAACTGCATCAATTCTGGA+AGG 0.666919 1_4:+28737707 None:intergenic
ATAAACCTAATTGTTGACAA+GGG 0.680053 1_4:+28738058 Msa0158850:five_prime_UTR
TTGCGGTGAGACAACAACCT+CGG 0.687409 1_4:-28738350 Msa0158840:five_prime_UTR
CTCCATCAGGTATATCATCG+CGG 0.692866 1_4:-28741343 None:intergenic
ACAGTGCCCCAATATTGGAG+AGG 0.695518 1_4:+28738585 Msa0158850:CDS
CCATGCAAAACAAACCAAGG+AGG 0.715160 1_4:+28742468 Msa0158850:CDS
GACATCGCAGACACCGACAG+AGG 0.720029 1_4:-28738379 Msa0158840:five_prime_UTR
CGAATGTGAAGAAACCTGCG+TGG 0.831770 1_4:+28738473 Msa0158850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTATTATTTGCTT+AGG - chr1_4:28737738-28737757 Msa0158840:intron 10.0%
!!! TTTTAATTTGTAATTAATAC+TGG - chr1_4:28738018-28738037 Msa0158840:five_prime_UTR 10.0%
!!! AATTATTATTTTTTTGTCTT+CGG + chr1_4:28738124-28738143 Msa0158850:five_prime_UTR 10.0%
!! TTAATATTTGATTATAACTT+AGG + chr1_4:28739380-28739399 Msa0158850:intron 10.0%
!! TAATATTTGATTATAACTTA+GGG + chr1_4:28739381-28739400 Msa0158850:intron 10.0%
!! CTATTTATAAAAAATAATGT+AGG - chr1_4:28739432-28739451 None:intergenic 10.0%
!! ATTATATATTTAACATTTAG+TGG + chr1_4:28740006-28740025 Msa0158850:intron 10.0%
!! TACAAATTACTAAAATATTT+GGG - chr1_4:28741019-28741038 None:intergenic 10.0%
!! ATACAAATTACTAAAATATT+TGG - chr1_4:28741020-28741039 None:intergenic 10.0%
!!! AAATTTTGGTTTTTGATATA+TGG + chr1_4:28738681-28738700 Msa0158850:intron 15.0%
!!! AATTTTGGTTTTTGATATAT+GGG + chr1_4:28738682-28738701 Msa0158850:intron 15.0%
!! AAAAAACTAATAGCATAAAA+GGG - chr1_4:28738810-28738829 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr1_4:28738891-28738910 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr1_4:28738994-28739013 None:intergenic 15.0%
!! AAACTAACTAATAGTTAATA+AGG + chr1_4:28739008-28739027 Msa0158850:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1_4:28739017-28739036 Msa0158850:intron 15.0%
!! AATATTTGATTATAACTTAG+GGG + chr1_4:28739382-28739401 Msa0158850:intron 15.0%
!!! AGTAGTTATTTTATTGAATA+AGG + chr1_4:28739450-28739469 Msa0158850:intron 15.0%
!! AAATTCAAAATTGTGTTAAA+TGG - chr1_4:28740211-28740230 None:intergenic 15.0%
!! GATTAATAGATATTGATATT+GGG + chr1_4:28740315-28740334 Msa0158850:intron 15.0%
!!! AACTTTTTAAGTAAGTAATA+GGG - chr1_4:28741280-28741299 None:intergenic 15.0%
!!! AATTTTAGGGATATTAATAT+TGG - chr1_4:28742238-28742257 None:intergenic 15.0%
!! AATATTAATATCCCTAAAAT+TGG + chr1_4:28742237-28742256 Msa0158850:intron 15.0%
!! ATATTAATATCCCTAAAATT+GGG + chr1_4:28742238-28742257 Msa0158850:intron 15.0%
!!! ATTCCCTAATTTTTTTTTTT+TGG + chr1_4:28743384-28743403 Msa0158850:three_prime_UTR 15.0%
!! CTACCAAAAAAAAAAAATTA+GGG - chr1_4:28743390-28743409 None:intergenic 15.0%
!! TCTACCAAAAAAAAAAAATT+AGG - chr1_4:28743391-28743410 None:intergenic 15.0%
!! CAATATGTGATAATAAATTA+GGG - chr1_4:28743423-28743442 None:intergenic 15.0%
!! ACAATATGTGATAATAAATT+AGG - chr1_4:28743424-28743443 None:intergenic 15.0%
!! AAACAAAAAAAAATTAGACA+GGG - chr1_4:28743462-28743481 None:intergenic 15.0%
!! TAAACAAAAAAAAATTAGAC+AGG - chr1_4:28743463-28743482 None:intergenic 15.0%
!!! TTTTTATTATTTGCTTAGGT+GGG - chr1_4:28737734-28737753 Msa0158840:intron 20.0%
!!! ATTTTTATTATTTGCTTAGG+TGG - chr1_4:28737735-28737754 Msa0158840:intron 20.0%
!! TTAAAAAAAACAGAGAAGAA+AGG - chr1_4:28738098-28738117 Msa0158840:five_prime_UTR 20.0%
!!! AATTTTTGTTTTTGATGAAC+TGG + chr1_4:28738650-28738669 Msa0158850:intron 20.0%
!!! ATTTTTGTTTTTGATGAACT+GGG + chr1_4:28738651-28738670 Msa0158850:intron 20.0%
!!! CAAAATTTGATTTTTGAGAT+AGG + chr1_4:28738740-28738759 Msa0158850:intron 20.0%
!! GAAAAAACTAATAGCATAAA+AGG - chr1_4:28738811-28738830 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1_4:28738931-28738950 None:intergenic 20.0%
!!! GTTTTTGTTAATTGGATTTA+GGG - chr1_4:28739619-28739638 None:intergenic 20.0%
!! ATATTAAACAAAACCAATGT+AGG - chr1_4:28739949-28739968 None:intergenic 20.0%
!! GGATTAATAGATATTGATAT+TGG + chr1_4:28740314-28740333 Msa0158850:intron 20.0%
!! TTTCATTCTTACATAAAACA+CGG + chr1_4:28741132-28741151 Msa0158850:intron 20.0%
!!! ACTTTTTAAGTAAGTAATAG+GGG - chr1_4:28741279-28741298 None:intergenic 20.0%
!!! GAACTTTTTAAGTAAGTAAT+AGG - chr1_4:28741281-28741300 None:intergenic 20.0%
!!! CTTTTATTTTACTTTTGAGT+AGG - chr1_4:28741731-28741750 None:intergenic 20.0%
!! ATGGTAATATGTTAAATATG+AGG + chr1_4:28741960-28741979 Msa0158850:intron 20.0%
!!! TATCATATTCAATTTTCAAC+TGG + chr1_4:28742057-28742076 Msa0158850:intron 20.0%
!! ATATATGAAATTGGAGAATA+AGG - chr1_4:28742186-28742205 None:intergenic 20.0%
!! TATTAATATCCCTAAAATTG+GGG + chr1_4:28742239-28742258 Msa0158850:intron 20.0%
!!! ATTTTCAAGTTCATTTTCTA+AGG - chr1_4:28742632-28742651 None:intergenic 20.0%
!! CATATAATTGACAAAAAATG+TGG - chr1_4:28743330-28743349 None:intergenic 20.0%
!! CTGAAAATGAAAACCTTTTT+AGG + chr1_4:28737853-28737872 Msa0158850:intron 25.0%
! TGTAATTAATACTGGTGAAA+AGG - chr1_4:28738010-28738029 Msa0158840:five_prime_UTR 25.0%
! ATAAACCTAATTGTTGACAA+GGG + chr1_4:28738058-28738077 Msa0158850:five_prime_UTR 25.0%
!!! GTTTTGTGGTTTTATGAAAT+GGG - chr1_4:28738273-28738292 Msa0158840:five_prime_UTR 25.0%
!! TGAAAGATTTTCGAAGATTA+AGG + chr1_4:28738519-28738538 Msa0158850:CDS 25.0%
!!! TATTAGTTTTTTCTGTGATG+TGG + chr1_4:28738818-28738837 Msa0158850:intron 25.0%
!!! ATTAGTTTTTTCTGTGATGT+GGG + chr1_4:28738819-28738838 Msa0158850:intron 25.0%
! TTATAGATAAAAGCAGATAG+TGG + chr1_4:28739154-28739173 Msa0158850:intron 25.0%
!! GGTTTTTGTTAATTGGATTT+AGG - chr1_4:28739620-28739639 None:intergenic 25.0%
!!! GTGTTTTGGTTTTTGTTAAT+TGG - chr1_4:28739627-28739646 None:intergenic 25.0%
! TATCAATATCTATTAATCCG+TGG - chr1_4:28740313-28740332 None:intergenic 25.0%
! TAGACCTTTACATAAACTAA+CGG + chr1_4:28740908-28740927 Msa0158850:intron 25.0%
!!! TTGATGGTTTTTGTTTCATT+CGG + chr1_4:28741084-28741103 Msa0158850:intron 25.0%
! TTATATTGTCATAACAAGTG+TGG + chr1_4:28741319-28741338 Msa0158850:CDS 25.0%
!! TTAAAGATGCATTTTACACA+AGG + chr1_4:28741429-28741448 Msa0158850:intron 25.0%
! CTGAAATTAAAAAACTCTCA+TGG - chr1_4:28741794-28741813 None:intergenic 25.0%
!! GATAACTAGTTTGTACAAAA+TGG + chr1_4:28741941-28741960 Msa0158850:intron 25.0%
! ATCAAGCAAATAAGATTTCA+CGG + chr1_4:28741985-28742004 Msa0158850:intron 25.0%
! GATATTAATATTGGAGAATG+AGG - chr1_4:28742229-28742248 None:intergenic 25.0%
!! CAATCAATAGGCTTTTATTA+TGG - chr1_4:28742290-28742309 None:intergenic 25.0%
!! TAATAAAAGCCTATTGATTG+TGG + chr1_4:28742290-28742309 Msa0158850:intron 25.0%
! ATTACTTCTCTACTAGTATA+AGG + chr1_4:28742321-28742340 Msa0158850:intron 25.0%
! TTACTTCTCTACTAGTATAA+GGG + chr1_4:28742322-28742341 Msa0158850:intron 25.0%
!!! AACTTACATTGTGTTTTTGT+AGG + chr1_4:28742357-28742376 Msa0158850:intron 25.0%
!! TTTGATTTCTGGAAAGAATA+TGG + chr1_4:28742818-28742837 Msa0158850:CDS 25.0%
! TAAGACATATACCAAATGAA+GGG - chr1_4:28742921-28742940 None:intergenic 25.0%
! TTAAGACATATACCAAATGA+AGG - chr1_4:28742922-28742941 None:intergenic 25.0%
! AATTCTTTACTGTGTGATTA+TGG + chr1_4:28743194-28743213 Msa0158850:exon 25.0%
CAAGTTTATCACACCTAAAA+AGG - chr1_4:28737869-28737888 Msa0158840:CDS 30.0%
TTGAATCGAAGATGAGTAAT+GGG - chr1_4:28737984-28738003 Msa0158840:exon 30.0%
TTTGAATCGAAGATGAGTAA+TGG - chr1_4:28737985-28738004 Msa0158840:exon 30.0%
CATAAACCTAATTGTTGACA+AGG + chr1_4:28738057-28738076 Msa0158850:five_prime_UTR 30.0%
! AGTTGTTGTTGAAACAACTT+TGG - chr1_4:28738155-28738174 Msa0158840:five_prime_UTR 30.0%
!!! GGTTTTGTGGTTTTATGAAA+TGG - chr1_4:28738274-28738293 Msa0158840:five_prime_UTR 30.0%
AAAAGAACCTCTCCAATATT+GGG - chr1_4:28738595-28738614 None:intergenic 30.0%
AAAAAGAACCTCTCCAATAT+TGG - chr1_4:28738596-28738615 None:intergenic 30.0%
!!! AACTGGGTTTGTTGAAATTT+TGG + chr1_4:28738667-28738686 Msa0158850:intron 30.0%
!! GGTTTGTTGAAATTTGAGTT+TGG + chr1_4:28738703-28738722 Msa0158850:intron 30.0%
! GAAATTTGAGTTTGGTTAGT+TGG + chr1_4:28738711-28738730 Msa0158850:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr1_4:28739099-28739118 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1_4:28739100-28739119 Msa0158850:intron 30.0%
TTGATTATAACTTAGGGGTT+AGG + chr1_4:28739387-28739406 Msa0158850:intron 30.0%
GTTATACTGCTATAGTATAG+TGG + chr1_4:28740030-28740049 Msa0158850:intron 30.0%
! TGCTATAGTATAGTGGAATT+TGG + chr1_4:28740037-28740056 Msa0158850:intron 30.0%
AGCATATCGTTAAACAATAG+CGG - chr1_4:28740083-28740102 None:intergenic 30.0%
! ACAAAAAACTAGCCTAATCA+TGG - chr1_4:28740350-28740369 None:intergenic 30.0%
TTACTTATTGAGTCTAACCA+TGG - chr1_4:28740379-28740398 None:intergenic 30.0%
CAACACATTTATTCATGTGT+CGG + chr1_4:28740759-28740778 Msa0158850:intron 30.0%
AACACATTTATTCATGTGTC+GGG + chr1_4:28740760-28740779 Msa0158850:intron 30.0%
! ATTTAAGACAAAGTTTGGGT+TGG - chr1_4:28740797-28740816 None:intergenic 30.0%
AACCCAAACTTTGTCTTAAA+TGG + chr1_4:28740796-28740815 Msa0158850:intron 30.0%
ACCCAAACTTTGTCTTAAAT+GGG + chr1_4:28740797-28740816 Msa0158850:intron 30.0%
AGACCTTTACATAAACTAAC+GGG + chr1_4:28740909-28740928 Msa0158850:intron 30.0%
! CTCTGAAGAAATTATCTTGA+TGG + chr1_4:28741068-28741087 Msa0158850:intron 30.0%
CCAAATGAAAGTCATTAACA+TGG - chr1_4:28741198-28741217 None:intergenic 30.0%
CCATGTTAATGACTTTCATT+TGG + chr1_4:28741195-28741214 Msa0158850:intron 30.0%
ATTAGGTGAGATCAGTTATA+TGG - chr1_4:28741222-28741241 None:intergenic 30.0%
TGATCTCACCTAATGAAATA+AGG + chr1_4:28741228-28741247 Msa0158850:intron 30.0%
GAATATCAAACCTGAAATCA+TGG + chr1_4:28741515-28741534 Msa0158850:intron 30.0%
! AGTGTTTAACCTCTGATTTT+CGG + chr1_4:28741541-28741560 Msa0158850:CDS 30.0%
ACAACATTGAAACAGTCAAA+CGG + chr1_4:28741619-28741638 Msa0158850:CDS 30.0%
ACTAGTTATCACATTCAAAG+TGG - chr1_4:28741931-28741950 None:intergenic 30.0%
TCTTTGATCAGTTGTTAAGT+AGG + chr1_4:28742101-28742120 Msa0158850:intron 30.0%
CTTTGATCAGTTGTTAAGTA+GGG + chr1_4:28742102-28742121 Msa0158850:intron 30.0%
AAATTGGAGAATAAGGTTAC+TGG - chr1_4:28742179-28742198 None:intergenic 30.0%
TTGTACAAACCACAATCAAT+AGG - chr1_4:28742302-28742321 None:intergenic 30.0%
ACGAAATCTTCGATAATGTT+AGG + chr1_4:28742499-28742518 Msa0158850:CDS 30.0%
AGTCAGAATATCCACATTTA+TGG - chr1_4:28742575-28742594 None:intergenic 30.0%
AAAGAATATGGAGAGTCTAT+CGG + chr1_4:28742830-28742849 Msa0158850:CDS 30.0%
AAGACATATACCAAATGAAG+GGG - chr1_4:28742920-28742939 None:intergenic 30.0%
AAACAACAAATCTGCCTATA+TGG + chr1_4:28742971-28742990 Msa0158850:intron 30.0%
ATATCTTTGCTCCTAAGAAA+TGG - chr1_4:28743307-28743326 None:intergenic 30.0%
TTAGGTGTGATAAACTTGAG+AGG + chr1_4:28737871-28737890 Msa0158850:five_prime_UTR 35.0%
TCAGTGGTAGTTGAAAAAGT+GGG - chr1_4:28737934-28737953 Msa0158840:CDS 35.0%
TTCAGTGGTAGTTGAAAAAG+TGG - chr1_4:28737935-28737954 Msa0158840:CDS 35.0%
GGAAAAGAAAATGTGTTCAG+TGG - chr1_4:28737950-28737969 Msa0158840:CDS 35.0%
TGAATCGAAGATGAGTAATG+GGG - chr1_4:28737983-28738002 Msa0158840:exon 35.0%
!! GGTTTTATGAAATGGGTTTG+AGG - chr1_4:28738266-28738285 Msa0158840:five_prime_UTR 35.0%
! AGTAAAAGAGGAAGGTTTTG+TGG - chr1_4:28738287-28738306 Msa0158840:five_prime_UTR 35.0%
AGTGTGAAAGTAAAAGAGGA+AGG - chr1_4:28738295-28738314 Msa0158840:five_prime_UTR 35.0%
TCGAAGTGTGAAAGTAAAAG+AGG - chr1_4:28738299-28738318 Msa0158840:five_prime_UTR 35.0%
ATGGAATCAGAGAACAAGAA+TGG + chr1_4:28738409-28738428 Msa0158850:CDS 35.0%
TGGAATCAGAGAACAAGAAT+GGG + chr1_4:28738410-28738429 Msa0158850:CDS 35.0%
TTCGAAAATCTTTCACCTTG+AGG - chr1_4:28738514-28738533 None:intergenic 35.0%
AAAGAACCTCTCCAATATTG+GGG - chr1_4:28738594-28738613 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr1_4:28738865-28738884 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr1_4:28738965-28738984 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr1_4:28738969-28738988 None:intergenic 35.0%
TTGAAACGGATGGAGTAATT+TGG + chr1_4:28739114-28739133 Msa0158850:intron 35.0%
TGAAACGGATGGAGTAATTT+GGG + chr1_4:28739115-28739134 Msa0158850:intron 35.0%
!! TAAGGCATTTGATAGTGTCA+AGG + chr1_4:28739468-28739487 Msa0158850:intron 35.0%
CTTCTATGAAGGTTTGTAGA+GGG + chr1_4:28739511-28739530 Msa0158850:intron 35.0%
ACAGATCAAGCACAATACTA+TGG + chr1_4:28739562-28739581 Msa0158850:intron 35.0%
GCTAAACACATCAAAACCAT+AGG + chr1_4:28739593-28739612 Msa0158850:intron 35.0%
! TTAATTGGATTTAGGGCCTA+TGG - chr1_4:28739612-28739631 None:intergenic 35.0%
CATGCATATCAGTAGAGAAA+TGG + chr1_4:28739739-28739758 Msa0158850:intron 35.0%
AATGCTACAGTGTACTATGA+TGG - chr1_4:28739802-28739821 None:intergenic 35.0%
GTAGGCTCTCTAAGTTAAAT+TGG - chr1_4:28739931-28739950 None:intergenic 35.0%
TTAACTTAGAGAGCCTACAT+TGG + chr1_4:28739933-28739952 Msa0158850:intron 35.0%
! TTTTGGTCATGTTCTTCACT+AGG + chr1_4:28740239-28740258 Msa0158850:intron 35.0%
TTACTACAACTACAAGCAGA+AGG - chr1_4:28740289-28740308 None:intergenic 35.0%
CTTGTAGTTGTAGTAAACCA+CGG + chr1_4:28740293-28740312 Msa0158850:intron 35.0%
!!! TAGTTTTTTGTTGAGTGCCA+TGG + chr1_4:28740359-28740378 Msa0158850:intron 35.0%
TTGAGACCTTTACATTCTGA+TGG + chr1_4:28740503-28740522 Msa0158850:intron 35.0%
TATTGCAACTGCTACAATCA+TGG + chr1_4:28740553-28740572 Msa0158850:CDS 35.0%
ACACATTTATTCATGTGTCG+GGG + chr1_4:28740761-28740780 Msa0158850:intron 35.0%
! GCCCATTTAAGACAAAGTTT+GGG - chr1_4:28740801-28740820 None:intergenic 35.0%
CTTACAAGATCCTTGTGTTT+GGG - chr1_4:28740835-28740854 None:intergenic 35.0%
! ATGCCCGTTAGTTTATGTAA+AGG - chr1_4:28740915-28740934 None:intergenic 35.0%
GGAATTAGATGCGAGAAAAT+TGG - chr1_4:28741177-28741196 None:intergenic 35.0%
TCACCTAATGAAATAAGGCT+TGG + chr1_4:28741233-28741252 Msa0158850:intron 35.0%
!! CAACCAAGCCTTATTTCATT+AGG - chr1_4:28741239-28741258 None:intergenic 35.0%
ATAATCCACGCTGAAAATTC+AGG - chr1_4:28741303-28741322 None:intergenic 35.0%
ACAAACTGTGAAAGCTATGA+AGG + chr1_4:28741382-28741401 Msa0158850:CDS 35.0%
! GTGTTTAACCTCTGATTTTC+GGG + chr1_4:28741542-28741561 Msa0158850:CDS 35.0%
! TGTTTAACCTCTGATTTTCG+GGG + chr1_4:28741543-28741562 Msa0158850:CDS 35.0%
! GAGTAGGTACCAACATTTTA+GGG - chr1_4:28741715-28741734 None:intergenic 35.0%
! TGAGTAGGTACCAACATTTT+AGG - chr1_4:28741716-28741735 None:intergenic 35.0%
ACTTACATAAGCCTTTCATG+AGG + chr1_4:28741904-28741923 Msa0158850:intron 35.0%
CTTACATAAGCCTTTCATGA+GGG + chr1_4:28741905-28741924 Msa0158850:intron 35.0%
ATATTGGAGAATGAGGTAAC+TGG - chr1_4:28742222-28742241 None:intergenic 35.0%
TCTACTAGTATAAGGGAAGA+TGG + chr1_4:28742329-28742348 Msa0158850:intron 35.0%
TCCATTTCTCATGTGTAGTA+TGG + chr1_4:28742412-28742431 Msa0158850:intron 35.0%
ACCATACTACACATGAGAAA+TGG - chr1_4:28742416-28742435 None:intergenic 35.0%
TTGCAGATATGAACAAAGCT+TGG + chr1_4:28742435-28742454 Msa0158850:intron 35.0%
AAACCATGCAAAACAAACCA+AGG + chr1_4:28742465-28742484 Msa0158850:CDS 35.0%
GGATTTAAGAGCCATAAATG+TGG + chr1_4:28742561-28742580 Msa0158850:CDS 35.0%
AATGTGGATATTCTGACTCT+TGG + chr1_4:28742577-28742596 Msa0158850:CDS 35.0%
GAACTTGAAAATTCTGTCCA+TGG + chr1_4:28742640-28742659 Msa0158850:intron 35.0%
TTCCAGAAATCAAACTTCTC+AGG - chr1_4:28742812-28742831 None:intergenic 35.0%
GGGTGCAATGATATTTGAAT+GGG - chr1_4:28742900-28742919 None:intergenic 35.0%
CACATTGTTTCAGTCCATAT+AGG - chr1_4:28742988-28743007 None:intergenic 35.0%
GATCAAGAAATCTATCAACG+AGG - chr1_4:28743029-28743048 None:intergenic 35.0%
AGAAAGATGCTTAGCTATAC+AGG + chr1_4:28743275-28743294 Msa0158850:three_prime_UTR 35.0%
GAGAGGATATCTAGATAAGC+AGG + chr1_4:28737888-28737907 Msa0158850:five_prime_UTR 40.0%
TGAAGGAGAAAGAACAAGGT+TGG - chr1_4:28738243-28738262 Msa0158840:five_prime_UTR 40.0%
! ATGAAATGGGTTTGAGGTGA+AGG - chr1_4:28738260-28738279 Msa0158840:five_prime_UTR 40.0%
!! ATGTGAAAGTGATGGATCGT+TGG - chr1_4:28738329-28738348 Msa0158840:five_prime_UTR 40.0%
GAAGCTTAACACTGTTTGTG+AGG + chr1_4:28738558-28738577 Msa0158850:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_4:28739104-28739123 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr1_4:28738966-28738985 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG + chr1_4:28739104-28739123 Msa0158850:intron 40.0%
GAAACGGATGGAGTAATTTG+GGG + chr1_4:28739116-28739135 Msa0158850:intron 40.0%
AAACGGATGGAGTAATTTGG+GGG + chr1_4:28739117-28739136 Msa0158850:intron 40.0%
CTTCACATTCAAAGCGTGTT+TGG + chr1_4:28739204-28739223 Msa0158850:intron 40.0%
CAACATGTGTCATGTTGTGT+CGG + chr1_4:28739231-28739250 Msa0158850:intron 40.0%
TCACAAAGACACCAAAACAC+TGG - chr1_4:28739329-28739348 None:intergenic 40.0%
TATCTACGCACCTTCTATGA+AGG + chr1_4:28739500-28739519 Msa0158850:intron 40.0%
CCTCTACAAACCTTCATAGA+AGG - chr1_4:28739513-28739532 None:intergenic 40.0%
CCTTCTATGAAGGTTTGTAG+AGG + chr1_4:28739510-28739529 Msa0158850:intron 40.0%
ACTATCATGTGCTAGACAAC+CGG + chr1_4:28739539-28739558 Msa0158850:intron 40.0%
AGTATTGTGCTTGATCTGTC+CGG - chr1_4:28739561-28739580 None:intergenic 40.0%
TGTGTGATGTATGTGTCAGA+GGG - chr1_4:28739653-28739672 None:intergenic 40.0%
CGTATAACCTGCATAACACT+AGG + chr1_4:28739673-28739692 Msa0158850:intron 40.0%
ATTGTGTGTATAGGTGTGGT+GGG - chr1_4:28739715-28739734 None:intergenic 40.0%
! AGTGTACTATGATGGAGGTT+GGG - chr1_4:28739794-28739813 None:intergenic 40.0%
!! GGAGTGGATTGGTGTATATT+AGG - chr1_4:28739825-28739844 None:intergenic 40.0%
TAGGTGTTTCAGCTCTACAT+AGG - chr1_4:28739846-28739865 None:intergenic 40.0%
! TTCTGATCTTGCACTGATGT+AGG - chr1_4:28739865-28739884 None:intergenic 40.0%
AGTGCAAGATCAGAACAGAT+CGG + chr1_4:28739870-28739889 Msa0158850:intron 40.0%
TTGTCAAATAGCAGCTGTAG+TGG + chr1_4:28740118-28740137 Msa0158850:intron 40.0%
!! ATGTTCTTCACTAGGTTGGT+GGG + chr1_4:28740247-28740266 Msa0158850:intron 40.0%
!! GGGTTTTGTGTACCATGATT+AGG + chr1_4:28740335-28740354 Msa0158850:intron 40.0%
CACTGTCCATCAGAATGTAA+AGG - chr1_4:28740512-28740531 None:intergenic 40.0%
! TACATTCTGATGGACAGTGT+TGG + chr1_4:28740513-28740532 Msa0158850:intron 40.0%
ACTGCTACAATCATGGTTCT+CGG + chr1_4:28740560-28740579 Msa0158850:CDS 40.0%
! ATTTTCCGGTTCCATAGGAT+CGG - chr1_4:28740648-28740667 None:intergenic 40.0%
! GGCCCATTTAAGACAAAGTT+TGG - chr1_4:28740802-28740821 None:intergenic 40.0%
TTGTGTTTGGGAAACATGTC+AGG - chr1_4:28740823-28740842 None:intergenic 40.0%
TGACATGTTTCCCAAACACA+AGG + chr1_4:28740822-28740841 Msa0158850:intron 40.0%
CCTTACAAGATCCTTGTGTT+TGG - chr1_4:28740836-28740855 None:intergenic 40.0%
CCAAACACAAGGATCTTGTA+AGG + chr1_4:28740833-28740852 Msa0158850:intron 40.0%
! AAGTTCCTGAATTTTCAGCG+TGG + chr1_4:28741295-28741314 Msa0158850:intron 40.0%
ATATACCTGATGGAGGAAGT+GGG + chr1_4:28741351-28741370 Msa0158850:CDS 40.0%
AAACACTCGACCATGATTTC+AGG - chr1_4:28741528-28741547 None:intergenic 40.0%
TGGGATCTCTAACAATTCGT+TGG - chr1_4:28741647-28741666 None:intergenic 40.0%
AACGAATTGTTAGAGATCCC+AGG + chr1_4:28741646-28741665 Msa0158850:CDS 40.0%
ACGAATTGTTAGAGATCCCA+GGG + chr1_4:28741647-28741666 Msa0158850:CDS 40.0%
!! CGCTGATTCAACTACTTTGT+CGG + chr1_4:28741685-28741704 Msa0158850:intron 40.0%
ATATCCCTAAAATTGGGGTC+AGG + chr1_4:28742244-28742263 Msa0158850:intron 40.0%
TATCCCTAAAATTGGGGTCA+GGG + chr1_4:28742245-28742264 Msa0158850:intron 40.0%
CATGCAAAACAAACCAAGGA+GGG + chr1_4:28742469-28742488 Msa0158850:CDS 40.0%
TTTCGTTATCATACCCTCCT+TGG - chr1_4:28742485-28742504 None:intergenic 40.0%
TCTTCGATAATGTTAGGCCT+TGG + chr1_4:28742505-28742524 Msa0158850:CDS 40.0%
ATTAGCATCGTCAGTAACCA+TGG - chr1_4:28742660-28742679 None:intergenic 40.0%
TCTTTGACTGTCAAGTGCAA+GGG - chr1_4:28742779-28742798 None:intergenic 40.0%
TCTGTTAAGAGCTTACCAGT+GGG - chr1_4:28742877-28742896 None:intergenic 40.0%
GGGGTGCAATGATATTTGAA+TGG - chr1_4:28742901-28742920 None:intergenic 40.0%
TATCATTGCACCCCTTCATT+TGG + chr1_4:28742907-28742926 Msa0158850:intron 40.0%
GCACTATATTTGTGTTGTGC+AGG + chr1_4:28743087-28743106 Msa0158850:intron 40.0%
ATATAGCAAGCAGCAAGAGA+TGG + chr1_4:28743219-28743238 Msa0158850:three_prime_UTR 40.0%
ACAGGTGTCTTCCATTTCTT+AGG + chr1_4:28743293-28743312 Msa0158850:three_prime_UTR 40.0%
GTGGTAGTTGAAAAAGTGGG+AGG - chr1_4:28737931-28737950 Msa0158840:CDS 45.0%
! ATCGAAGATGAGTAATGGGG+AGG - chr1_4:28737980-28737999 Msa0158840:exon 45.0%
CTCTGCCCTTGTCAACAATT+AGG - chr1_4:28738066-28738085 Msa0158840:five_prime_UTR 45.0%
GAGGTGAAGGAGAAAGAACA+AGG - chr1_4:28738247-28738266 Msa0158840:five_prime_UTR 45.0%
!! AAAGTGATGGATCGTTGGCT+TGG - chr1_4:28738324-28738343 Msa0158840:five_prime_UTR 45.0%
TCCATCACTTTCACATTCCG+AGG + chr1_4:28738333-28738352 Msa0158850:CDS 45.0%
ACCTCGGAATGTGAAAGTGA+TGG - chr1_4:28738337-28738356 Msa0158840:five_prime_UTR 45.0%
ACGCAGGTTTCTTCACATTC+GGG - chr1_4:28738474-28738493 None:intergenic 45.0%
CACGCAGGTTTCTTCACATT+CGG - chr1_4:28738475-28738494 None:intergenic 45.0%
TTGAGACAGAAAGCTCCTCA+AGG + chr1_4:28738496-28738515 Msa0158850:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_4:28739103-28739122 None:intergenic 45.0%
CGACACAACATGACACATGT+TGG - chr1_4:28739233-28739252 None:intergenic 45.0%
! GTGTCTATGTGCCAGTGTTT+TGG + chr1_4:28739315-28739334 Msa0158850:intron 45.0%
! GGTGTCTTTGTGAGTGTTGT+TGG + chr1_4:28739336-28739355 Msa0158850:intron 45.0%
TGATGTATGTGTCAGAGGGT+AGG - chr1_4:28739649-28739668 None:intergenic 45.0%
GTGTGTGATGTATGTGTCAG+AGG - chr1_4:28739654-28739673 None:intergenic 45.0%
CCTTTCTCCTAGTGTTATGC+AGG - chr1_4:28739683-28739702 None:intergenic 45.0%
CCTGCATAACACTAGGAGAA+AGG + chr1_4:28739680-28739699 Msa0158850:intron 45.0%
TTGTGTGTATAGGTGTGGTG+GGG - chr1_4:28739714-28739733 None:intergenic 45.0%
GATTGTGTGTATAGGTGTGG+TGG - chr1_4:28739716-28739735 None:intergenic 45.0%
CGTGATTGTGTGTATAGGTG+TGG - chr1_4:28739719-28739738 None:intergenic 45.0%
GCATGCGTGATTGTGTGTAT+AGG - chr1_4:28739724-28739743 None:intergenic 45.0%
! CAGTGTACTATGATGGAGGT+TGG - chr1_4:28739795-28739814 None:intergenic 45.0%
GCTACAGTGTACTATGATGG+AGG - chr1_4:28739799-28739818 None:intergenic 45.0%
AGCTCTACATAGGAGTGGAT+TGG - chr1_4:28739836-28739855 None:intergenic 45.0%
GTTTCAGCTCTACATAGGAG+TGG - chr1_4:28739841-28739860 None:intergenic 45.0%
! TAAGTCCAGCTTGCTTTCAC+CGG - chr1_4:28739896-28739915 None:intergenic 45.0%
TTCCGCTACACTAGTGCTAA+TGG - chr1_4:28740146-28740165 None:intergenic 45.0%
GGTCATGTTCTTCACTAGGT+TGG + chr1_4:28740243-28740262 Msa0158850:intron 45.0%
! CATGTTCTTCACTAGGTTGG+TGG + chr1_4:28740246-28740265 Msa0158850:intron 45.0%
! TCTGATGGACAGTGTTGGAA+TGG + chr1_4:28740518-28740537 Msa0158850:intron 45.0%
CTGCTACAATCATGGTTCTC+GGG + chr1_4:28740561-28740580 Msa0158850:CDS 45.0%
TGCTACAATCATGGTTCTCG+GGG + chr1_4:28740562-28740581 Msa0158850:CDS 45.0%
! TTTTCCGGTTCCATAGGATC+GGG - chr1_4:28740647-28740666 None:intergenic 45.0%
! GCAGTATTTTCCGGTTCCAT+AGG - chr1_4:28740653-28740672 None:intergenic 45.0%
!! ATGGCCTTGGCAGTATTTTC+CGG - chr1_4:28740662-28740681 None:intergenic 45.0%
CTCCATCAGGTATATCATCG+CGG - chr1_4:28741346-28741365 None:intergenic 45.0%
GATATACCTGATGGAGGAAG+TGG + chr1_4:28741350-28741369 Msa0158850:CDS 45.0%
!! TGATTTTCGGGGTGATCTGA+AGG + chr1_4:28741554-28741573 Msa0158850:CDS 45.0%
TCTGAAGGCTGTAGAAACTC+TGG + chr1_4:28741569-28741588 Msa0158850:CDS 45.0%
! GTAGAAACTCTGGTTCACTC+AGG + chr1_4:28741579-28741598 Msa0158850:CDS 45.0%
TTCAAAGTGGCCCTCATGAA+AGG - chr1_4:28741918-28741937 None:intergenic 45.0%
ATCCCTAAAATTGGGGTCAG+GGG + chr1_4:28742246-28742265 Msa0158850:intron 45.0%
!!! CCTCCTTGGTTTGTTTTGCA+TGG - chr1_4:28742471-28742490 None:intergenic 45.0%
CCATGCAAAACAAACCAAGG+AGG + chr1_4:28742468-28742487 Msa0158850:CDS 45.0%
CGAGGTGAAGGAAACAATGA+TGG + chr1_4:28742540-28742559 Msa0158850:CDS 45.0%
GACTCTTGGTCAGTATTTGC+AGG + chr1_4:28742591-28742610 Msa0158850:CDS 45.0%
CTCTTTGACTGTCAAGTGCA+AGG - chr1_4:28742780-28742799 None:intergenic 45.0%
! CGCCTGAGAAGTTTGATTTC+TGG + chr1_4:28742807-28742826 Msa0158850:CDS 45.0%
! GGTTTTCGTTATGTAGCCAG+CGG + chr1_4:28742851-28742870 Msa0158850:CDS 45.0%
GTCTGTTAAGAGCTTACCAG+TGG - chr1_4:28742878-28742897 None:intergenic 45.0%
CTATCAACGAGGACAGTTAG+AGG - chr1_4:28743018-28743037 None:intergenic 45.0%
TACGATCTTCATACCGAGCT+GGG + chr1_4:28743110-28743129 Msa0158850:CDS 45.0%
!! GAAAGTGCCAAGAATGCAGA+TGG + chr1_4:28743160-28743179 Msa0158850:CDS 45.0%
CAATGAGCCATCTGCATTCT+TGG - chr1_4:28743170-28743189 None:intergenic 45.0%
!! AAATAAAATAAAAAAACATT+TGG + chr1_4:28737751-28737770 Msa0158850:intron 5.0%
!!! TTTGAATTTTTATTTTATTT+TGG + chr1_4:28740222-28740241 Msa0158850:intron 5.0%
!!! TATAAATTTACATTATTTTT+TGG - chr1_4:28741819-28741838 None:intergenic 5.0%
!! TATATAATTATATATGAAAT+TGG - chr1_4:28742195-28742214 None:intergenic 5.0%
! GAGTAATGGGGAGGAAGAGA+AGG - chr1_4:28737971-28737990 Msa0158840:CDS 50.0%
TTGCGGTGAGACAACAACCT+CGG - chr1_4:28738353-28738372 Msa0158840:five_prime_UTR 50.0%
ACCGCAACAACAACCTCTGT+CGG + chr1_4:28738366-28738385 Msa0158850:CDS 50.0%
! ACCGACAGAGGTTGTTGTTG+CGG - chr1_4:28738370-28738389 Msa0158840:five_prime_UTR 50.0%
AACAAGAATGGGCCTTACCC+AGG + chr1_4:28738421-28738440 Msa0158850:CDS 50.0%
TTCGGGTCTCTTCCTGTGAA+TGG - chr1_4:28738457-28738476 None:intergenic 50.0%
CGAATGTGAAGAAACCTGCG+TGG + chr1_4:28738473-28738492 Msa0158850:CDS 50.0%
GAAGCACAGTGCCCCAATAT+TGG + chr1_4:28738580-28738599 Msa0158850:CDS 50.0%
ACAGTGCCCCAATATTGGAG+AGG + chr1_4:28738585-28738604 Msa0158850:CDS 50.0%
! GTGATGTGGGTTGCTTAGCA+AGG + chr1_4:28738832-28738851 Msa0158850:intron 50.0%
ATGTAGGCTCTCTCTGTCAC+TGG - chr1_4:28739416-28739435 None:intergenic 50.0%
! GTGTCAGAGGGTAGGTGTTT+TGG - chr1_4:28739641-28739660 None:intergenic 50.0%
TGTGTGTATAGGTGTGGTGG+GGG - chr1_4:28739713-28739732 None:intergenic 50.0%
CAAGATCAGAACAGATCGGC+CGG + chr1_4:28739874-28739893 Msa0158850:intron 50.0%
CGCCATTAGCACTAGTGTAG+CGG + chr1_4:28740141-28740160 Msa0158850:intron 50.0%
! GATGGACAGTGTTGGAATGG+AGG + chr1_4:28740521-28740540 Msa0158850:intron 50.0%
TGTTGGAATGGAGGCGATGA+TGG + chr1_4:28740530-28740549 Msa0158850:CDS 50.0%
!! TGGGTTTCTGCTGGTCTTCA+CGG - chr1_4:28740618-28740637 None:intergenic 50.0%
GGAACCGGAAAATACTGCCA+AGG + chr1_4:28740655-28740674 Msa0158850:CDS 50.0%
GACCGCGATGATATACCTGA+TGG + chr1_4:28741341-28741360 Msa0158850:CDS 50.0%
CGCGATGATATACCTGATGG+AGG + chr1_4:28741344-28741363 Msa0158850:CDS 50.0%
AAATGCCCACTTCCTCCATC+AGG - chr1_4:28741359-28741378 None:intergenic 50.0%
CAGATCACCCCGAAAATCAG+AGG - chr1_4:28741553-28741572 None:intergenic 50.0%
ATTGTTAGAGATCCCAGGGC+TGG + chr1_4:28741651-28741670 Msa0158850:CDS 50.0%
TTGTTAGAGATCCCAGGGCT+GGG + chr1_4:28741652-28741671 Msa0158850:CDS 50.0%
GTCGGAGAGCCCTAAAATGT+TGG + chr1_4:28741703-28741722 Msa0158850:intron 50.0%
TCCCTAAAATTGGGGTCAGG+GGG + chr1_4:28742247-28742266 Msa0158850:intron 50.0%
! TCCCCCTGACCCCAATTTTA+GGG - chr1_4:28742251-28742270 None:intergenic 50.0%
! TTCCCCCTGACCCCAATTTT+AGG - chr1_4:28742252-28742271 None:intergenic 50.0%
! CGAATCTGATGACGAGGTGA+AGG + chr1_4:28742528-28742547 Msa0158850:CDS 50.0%
ACTGTCAAGTGCAAGGGAGT+CGG - chr1_4:28742773-28742792 None:intergenic 50.0%
GTACGATCTTCATACCGAGC+TGG + chr1_4:28743109-28743128 Msa0158850:CDS 50.0%
ACGATCTTCATACCGAGCTG+GGG + chr1_4:28743111-28743130 Msa0158850:CDS 50.0%
GGAGCTCTTTGTGCAGACAA+TGG + chr1_4:28743132-28743151 Msa0158850:CDS 50.0%
GTCTGCGATGTCGAAGCTGA+TGG + chr1_4:28738390-28738409 Msa0158850:CDS 55.0%
AAGAATGGGCCTTACCCAGG+TGG + chr1_4:28738424-28738443 Msa0158850:CDS 55.0%
AGAATGGGCCTTACCCAGGT+GGG + chr1_4:28738425-28738444 Msa0158850:CDS 55.0%
TGAATGGACCCAACCCACCT+GGG - chr1_4:28738441-28738460 None:intergenic 55.0%
GCTTTCTGTCTCAACCACGC+AGG - chr1_4:28738490-28738509 None:intergenic 55.0%
TCCTCCCGATCCTATGGAAC+CGG + chr1_4:28740640-28740659 Msa0158850:CDS 55.0%
TGCCAAGGCCATTGCCAGTT+GGG + chr1_4:28740670-28740689 Msa0158850:CDS 55.0%
GTGATATACGCACCCCCAAC+TGG - chr1_4:28740687-28740706 None:intergenic 55.0%
GATGCAACTTACCCAGCCCT+GGG - chr1_4:28741666-28741685 None:intergenic 55.0%
CCTCGTCATCAGATTCGCCA+AGG - chr1_4:28742525-28742544 None:intergenic 55.0%
! CCTTGGCGAATCTGATGACG+AGG + chr1_4:28742522-28742541 Msa0158850:CDS 55.0%
GACATCGCAGACACCGACAG+AGG - chr1_4:28738382-28738401 Msa0158840:five_prime_UTR 60.0%
GTGAATGGACCCAACCCACC+TGG - chr1_4:28738442-28738461 None:intergenic 60.0%
!! GGTGGGTTGGGTCCATTCAC+AGG + chr1_4:28738442-28738461 Msa0158850:CDS 60.0%
ATCGGCCGGTGAAAGCAAGC+TGG + chr1_4:28739888-28739907 Msa0158850:intron 60.0%
CTCGGGGATACATGCACTCG+CGG + chr1_4:28740578-28740597 Msa0158850:CDS 60.0%
CCATAGGATCGGGAGGAGCT+GGG - chr1_4:28740637-28740656 None:intergenic 60.0%
TCCATAGGATCGGGAGGAGC+TGG - chr1_4:28740638-28740657 None:intergenic 60.0%
TCCGGTTCCATAGGATCGGG+AGG - chr1_4:28740644-28740663 None:intergenic 60.0%
CTGCCAAGGCCATTGCCAGT+TGG + chr1_4:28740669-28740688 Msa0158850:CDS 60.0%
GCCAAGGCCATTGCCAGTTG+GGG + chr1_4:28740671-28740690 Msa0158850:CDS 60.0%
CCAAGGCCATTGCCAGTTGG+GGG + chr1_4:28740672-28740691 Msa0158850:CDS 60.0%
TACGCACCCCCAACTGGCAA+TGG - chr1_4:28740681-28740700 None:intergenic 60.0%
CGATGCAACTTACCCAGCCC+TGG - chr1_4:28741667-28741686 None:intergenic 60.0%
TTGGGGTCAGGGGGAAGAGA+TGG + chr1_4:28742256-28742275 Msa0158850:intron 60.0%
TTATGTAGCCAGCGGCCCAC+TGG + chr1_4:28742859-28742878 Msa0158850:CDS 60.0%
GCACAAAGAGCTCCCCAGCT+CGG - chr1_4:28743126-28743145 None:intergenic 60.0%
TGGGCCTTACCCAGGTGGGT+TGG + chr1_4:28738429-28738448 Msa0158850:CDS 65.0%
! GGGCCTTACCCAGGTGGGTT+GGG + chr1_4:28738430-28738449 Msa0158850:CDS 65.0%
GGACCCAACCCACCTGGGTA+AGG - chr1_4:28738436-28738455 None:intergenic 65.0%
GGGAGGAGCTGGGTTTCTGC+TGG - chr1_4:28740627-28740646 None:intergenic 65.0%
CCCAGCTCCTCCCGATCCTA+TGG + chr1_4:28740634-28740653 Msa0158850:CDS 65.0%
CCCCCAACTGGCAATGGCCT+TGG - chr1_4:28740675-28740694 None:intergenic 65.0%
GGGTCAGGGGGAAGAGATGG+AGG + chr1_4:28742259-28742278 Msa0158850:intron 65.0%
AGAGCTTACCAGTGGGCCGC+TGG - chr1_4:28742870-28742889 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 28737720 28743566 28737720 ID=Msa0158850;Name=Msa0158850
chr1_4 mRNA 28737720 28743566 28737720 ID=Msa0158850-mRNA-1;Parent=Msa0158850;Name=Msa0158850-mRNA-1;_AED=0.04;_eAED=0.04;_QI=345|1|1|1|0.85|0.75|8|371|397
chr1_4 exon 28737720 28737735 28737720 ID=Msa0158850-mRNA-1:exon:9218;Parent=Msa0158850-mRNA-1
chr1_4 exon 28737867 28738606 28737867 ID=Msa0158850-mRNA-1:exon:9219;Parent=Msa0158850-mRNA-1
chr1_4 exon 28740530 28740693 28740530 ID=Msa0158850-mRNA-1:exon:9220;Parent=Msa0158850-mRNA-1
chr1_4 exon 28741313 28741403 28741313 ID=Msa0158850-mRNA-1:exon:9221;Parent=Msa0158850-mRNA-1
chr1_4 exon 28741516 28741673 28741516 ID=Msa0158850-mRNA-1:exon:9222;Parent=Msa0158850-mRNA-1
chr1_4 exon 28742441 28742612 28742441 ID=Msa0158850-mRNA-1:exon:9223;Parent=Msa0158850-mRNA-1
chr1_4 exon 28742770 28742880 28742770 ID=Msa0158850-mRNA-1:exon:9224;Parent=Msa0158850-mRNA-1
chr1_4 exon 28743109 28743566 28743109 ID=Msa0158850-mRNA-1:exon:9225;Parent=Msa0158850-mRNA-1
chr1_4 five_prime_UTR 28737720 28737735 28737720 ID=Msa0158850-mRNA-1:five_prime_utr;Parent=Msa0158850-mRNA-1
chr1_4 five_prime_UTR 28737867 28738195 28737867 ID=Msa0158850-mRNA-1:five_prime_utr;Parent=Msa0158850-mRNA-1
chr1_4 CDS 28738196 28738606 28738196 ID=Msa0158850-mRNA-1:cds;Parent=Msa0158850-mRNA-1
chr1_4 CDS 28740530 28740693 28740530 ID=Msa0158850-mRNA-1:cds;Parent=Msa0158850-mRNA-1
chr1_4 CDS 28741313 28741403 28741313 ID=Msa0158850-mRNA-1:cds;Parent=Msa0158850-mRNA-1
chr1_4 CDS 28741516 28741673 28741516 ID=Msa0158850-mRNA-1:cds;Parent=Msa0158850-mRNA-1
chr1_4 CDS 28742441 28742612 28742441 ID=Msa0158850-mRNA-1:cds;Parent=Msa0158850-mRNA-1
chr1_4 CDS 28742770 28742880 28742770 ID=Msa0158850-mRNA-1:cds;Parent=Msa0158850-mRNA-1
chr1_4 CDS 28743109 28743195 28743109 ID=Msa0158850-mRNA-1:cds;Parent=Msa0158850-mRNA-1
chr1_4 three_prime_UTR 28743196 28743566 28743196 ID=Msa0158850-mRNA-1:three_prime_utr;Parent=Msa0158850-mRNA-1
Gene Sequence

>Msa0158850

ATGCAAAATGTAAACAACTGCAAAATGTTTCATCAATCACTTCTCCAACCTTGTTCTTTCTCCTTCACCTCAAACCCATTTCATAAAACCACAAAACCTTCCTCTTTTACTTTCACACTTCGATGCCAAGCCAACGATCCATCACTTTCACATTCCGAGGTTGTTGTCTCACCGCAACAACAACCTCTGTCGGTGTCTGCGATGTCGAAGCTGATGGAATCAGAGAACAAGAATGGGCCTTACCCAGGTGGGTTGGGTCCATTCACAGGAAGAGACCCGAATGTGAAGAAACCTGCGTGGTTGAGACAGAAAGCTCCTCAAGGTGAAAGATTTTCGAAGATTAAGGAATCTATCTCTCAGTTGAAGCTTAACACTGTTTGTGAGGAAGCACAGTGCCCCAATATTGGAGAGTGTTGGAATGGAGGCGATGATGGTATTGCAACTGCTACAATCATGGTTCTCGGGGATACATGCACTCGCGGATGTAGATTTTGTGCCGTGAAGACCAGCAGAAACCCAGCTCCTCCCGATCCTATGGAACCGGAAAATACTGCCAAGGCCATTGCCAGTTGGGGCGTGGATTATATTGTCATAACAAGTGTGGACCGCGATGATATACCTGATGGAGGAAGTGGGCATTTTGCACAAACTGTGAAAGCTATGAAGAATATCAAACCTGAAATCATGGTCGAGTGTTTAACCTCTGATTTTCGGGGTGATCTGAAGGCTGTAGAAACTCTGGTTCACTCAGGTTTAGATGTTTTTGCTCACAACATTGAAACAGTCAAACGGCTCCAACGAATTGTTAGAGATCCCAGGGCTGGATATGAACAAAGCTTGGCAGTTTTAAACCATGCAAAACAAACCAAGGAGGGTATGATAACGAAATCTTCGATAATGTTAGGCCTTGGCGAATCTGATGACGAGGTGAAGGAAACAATGATGGATTTAAGAGCCATAAATGTGGATATTCTGACTCTTGGTCAGTATTTGCAGCCGACTCCCTTGCACTTGACAGTCAAAGAGTATGTTACGCCTGAGAAGTTTGATTTCTGGAAAGAATATGGAGAGTCTATCGGTTTTCGTTATGTAGCCAGCGGCCCACTGGTACGATCTTCATACCGAGCTGGGGAGCTCTTTGTGCAGACAATGGTAAGAGAAAGTGCCAAGAATGCAGATGGCTCATTGTTGTAA
Protein sequence

>Msa0158850

MQNVNNCKMFHQSLLQPCSFSFTSNPFHKTTKPSSFTFTLRCQANDPSLSHSEVVVSPQQQPLSVSAMSKLMESENKNGPYPGGLGPFTGRDPNVKKPAWLRQKAPQGERFSKIKESISQLKLNTVCEEAQCPNIGECWNGGDDGIATATIMVLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVITSVDRDDIPDGGSGHFAQTVKAMKNIKPEIMVECLTSDFRGDLKAVETLVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLAVLNHAKQTKEGMITKSSIMLGLGESDDEVKETMMDLRAINVDILTLGQYLQPTPLHLTVKEYVTPEKFDFWKEYGESIGFRYVASGPLVRSSYRAGELFVQTMVRESAKNADGSLL*