AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0477780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477780 MtrunA17_Chr3g0140041 94.980 498 6 2 1 498 1 479 0.0 963
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477780 AT4G32770.1 66.071 504 149 4 1 498 1 488 0.0 693

Find 160 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCCAATCACACAATTTC+TGG 0.153393 3_3:+82148987 Msa0477780:CDS
GGGAGGTGTAGGAGAGTAAA+TGG 0.240767 3_3:-82148639 None:intergenic
CGTTCCCGAGAAAATGGTTT+TGG 0.250397 3_3:+82151074 Msa0477780:CDS
AAGTAGCTACTTGGGGTTAT+TGG 0.292450 3_3:+82152179 Msa0477780:CDS
GACCTAGGTTTACTGGTGTT+GGG 0.295673 3_3:+82148921 Msa0477780:CDS
CCTGTTCTTAGCCGTGCTAT+TGG 0.308781 3_3:+82152819 Msa0477780:CDS
GTGGAGCGTTCCCGAGAAAA+TGG 0.320779 3_3:+82151068 Msa0477780:CDS
TCATGGTAAGTACAAACTTT+TGG 0.336719 3_3:+82152956 Msa0477780:three_prime_UTR
ACTTTGGAATTAGTACAATA+TGG 0.339764 3_3:+82148899 Msa0477780:CDS
TTAATGTATAAGAATGTTCA+TGG 0.341375 3_3:+82153062 Msa0477780:three_prime_UTR
GTGTTTAGGTATCACTTTGA+TGG 0.344307 3_3:+82148761 Msa0477780:intron
TTCCCCAGAAATTGTGTGAT+TGG 0.351635 3_3:-82148991 None:intergenic
GTCACTCCCCTTTGGAATCA+AGG 0.354231 3_3:+82150152 Msa0477780:CDS
CAAGGTTTCATTTGCGATGA+TGG 0.355793 3_3:+82150170 Msa0477780:CDS
CAATATGGACCTAGGTTTAC+TGG 0.359300 3_3:+82148914 Msa0477780:CDS
TCCCCAGAAATTGTGTGATT+GGG 0.365123 3_3:-82148990 None:intergenic
TGGTGGGTTGAGACAAATTC+CGG 0.365272 3_3:+82151472 Msa0477780:CDS
TAGCCGTGCTATTGGATTAC+CGG 0.369394 3_3:+82152827 Msa0477780:CDS
GGTGTTGGGGCACAAATTCT+TGG 0.371589 3_3:+82148935 Msa0477780:CDS
CATCTTATTCAGAAAAGAAC+TGG 0.385152 3_3:+82151044 Msa0477780:CDS
GGACCTAGGTTTACTGGTGT+TGG 0.399070 3_3:+82148920 Msa0477780:CDS
GCTTGTAAAGATACATGCTT+TGG 0.401985 3_3:+82152560 Msa0477780:CDS
TATAGTACACGTCCTGTATA+TGG 0.403430 3_3:+82150320 Msa0477780:CDS
TGTGAAACTGCAGATAATAT+TGG 0.403784 3_3:+82152716 Msa0477780:intron
TGTAGGAGAGTAAATGGGTT+TGG 0.412743 3_3:-82148633 None:intergenic
TACACGTCCTGTATATGGTT+GGG 0.419259 3_3:+82150325 Msa0477780:CDS
GAATACTAAAATTAAAATTG+TGG 0.423212 3_3:+82152582 Msa0477780:CDS
TCTCTTGGTAGAGAGTTTCA+TGG 0.424877 3_3:+82152939 Msa0477780:three_prime_UTR
AGAGTATAAGATAAGATTGT+TGG 0.427488 3_3:+82148298 Msa0477780:intron
TATATGGTTGGGGTGATGTT+GGG 0.431491 3_3:+82150336 Msa0477780:CDS
AGGTAGGAATGAACTGATGT+TGG 0.434714 3_3:+82149129 Msa0477780:intron
GTATATGGTTGGGGTGATGT+TGG 0.436667 3_3:+82150335 Msa0477780:CDS
ATTGTTAACGTGTGTTTAGT+TGG 0.440803 3_3:+82153086 Msa0477780:three_prime_UTR
AATACTAAAATTAAAATTGT+GGG 0.443751 3_3:+82152583 Msa0477780:CDS
TTAGGAGGAACCTCCTTGTT+CGG 0.446056 3_3:-82149187 None:intergenic
TCGCAAGGAATTGTCGACTT+TGG 0.453516 3_3:+82148883 Msa0477780:CDS
TATCTTTACAAGCTTGAGAA+AGG 0.455604 3_3:-82152550 None:intergenic
TCCCCAATCACACAATTTCT+GGG 0.459146 3_3:+82148988 Msa0477780:CDS
ATGGCCGGTGGCCTGTCAAC+AGG 0.465344 3_3:+82150428 Msa0477780:CDS
GAAAGGCCAGCTTCTGATGT+TGG 0.465394 3_3:-82152533 None:intergenic
ATTCAATAGCTTGGTTTCCA+TGG 0.468249 3_3:-82148462 None:intergenic
GCGCAGATTGGAATTCACTA+TGG 0.470754 3_3:+82152109 Msa0477780:intron
GGATTACCGGTAGATGTAGA+TGG 0.471198 3_3:+82152840 Msa0477780:CDS
GAAGAAGAAACAGAGGAGGA+AGG 0.472031 3_3:-82148506 None:intergenic
ACATCACCCCAACCATATAC+AGG 0.478564 3_3:-82150332 None:intergenic
GAAGGAAAGTGAAGAAGAGA+AGG 0.478990 3_3:-82148488 None:intergenic
CCAATAGCACGGCTAAGAAC+AGG 0.479300 3_3:-82152819 None:intergenic
CATGGAATGGTGTTGTAAGC+TGG 0.479963 3_3:+82152155 Msa0477780:CDS
TAAGAGCAGTTTGATTGCGT+TGG 0.482836 3_3:-82147990 None:intergenic
AAGAAAAGAACGTGTGATGT+TGG 0.482895 3_3:+82148344 Msa0477780:five_prime_UTR
AAAGAACGGTTGTGATGAAA+GGG 0.483907 3_3:-82148557 None:intergenic
TAAGCTGGGAAGTAGCTACT+TGG 0.490303 3_3:+82152170 Msa0477780:CDS
GGAAAGTGAAGAAGAGAAGG+AGG 0.494648 3_3:-82148485 None:intergenic
GACAATTCCTTGCGAAACGC+AGG 0.495409 3_3:-82148875 None:intergenic
TTTCCTCTGTTTAAACCACC+TGG 0.496378 3_3:+82152876 Msa0477780:CDS
AAGCTGGGAAGTAGCTACTT+GGG 0.500867 3_3:+82152171 Msa0477780:CDS
AAGTATCAATTCCTGAAAAG+AGG 0.503737 3_3:+82148819 Msa0477780:CDS
GGTGGGTTGAGACAAATTCC+GGG 0.504850 3_3:+82151473 Msa0477780:CDS
AGATTGAGATTGTTGTTGTT+CGG 0.504947 3_3:-82148609 None:intergenic
TCCATGTAAAACTTCTCTCT+TGG 0.505013 3_3:+82152924 Msa0477780:three_prime_UTR
GACATGGCAGCTCTAGAAGT+TGG 0.506366 3_3:+82152750 Msa0477780:CDS
CACGCAAATTCTTCGAGGGT+TGG 0.507645 3_3:+82148789 Msa0477780:CDS
GACATTTGAAAATGCTGCAT+TGG 0.507859 3_3:+82151505 Msa0477780:CDS
GGAGGTGTAGGAGAGTAAAT+GGG 0.508025 3_3:-82148638 None:intergenic
CGATGATTAGTTTGAAAGAA+CGG 0.508053 3_3:-82148571 None:intergenic
GAGGGCCATGGTTTAACACT+TGG 0.509944 3_3:+82152775 Msa0477780:CDS
TAACGTGTGTTTAGTTGGAG+GGG 0.510042 3_3:+82153091 Msa0477780:three_prime_UTR
AATGAAACCTTGATTCCAAA+GGG 0.511006 3_3:-82150159 None:intergenic
TCAAATGTCTCAGTTAGTCC+CGG 0.515148 3_3:-82151491 None:intergenic
AGAAGGAGGATTCAATAGCT+TGG 0.516141 3_3:-82148471 None:intergenic
ACCTAGGTTTACTGGTGTTG+GGG 0.516777 3_3:+82148922 Msa0477780:CDS
AAGATAGTTACCCGCTATGA+GGG 0.516871 3_3:-82148679 None:intergenic
GAAAGAACGGTTGTGATGAA+AGG 0.517625 3_3:-82148558 None:intergenic
AACTGCACGCAAATTCTTCG+AGG 0.519195 3_3:+82148784 Msa0477780:CDS
AACAGTAAAGACTGCTCGCT+GGG 0.520354 3_3:+82150295 Msa0477780:CDS
CACAGAAGTCAACTGCTGGC+TGG 0.521033 3_3:+82150363 Msa0477780:CDS
GGGGTGCGAAGTTGACGATT+GGG 0.522940 3_3:-82148659 None:intergenic
AAAGATAGTTACCCGCTATG+AGG 0.527165 3_3:-82148680 None:intergenic
TTAACGTGTGTTTAGTTGGA+GGG 0.528753 3_3:+82153090 Msa0477780:three_prime_UTR
GAACAAGGAGGTTCCTCCTA+AGG 0.529562 3_3:+82149189 Msa0477780:CDS
AGGGGTGCGAAGTTGACGAT+TGG 0.530318 3_3:-82148660 None:intergenic
TACATAAAACCTACCTTAGG+AGG 0.531597 3_3:-82149202 None:intergenic
CGTGCTCCAACATCAGAAGC+TGG 0.533200 3_3:+82152527 Msa0477780:CDS
GAAATTGCACTTACAGCCGC+TGG 0.534354 3_3:+82151452 Msa0477780:CDS
TTTAATGATAAAGTGTTCGA+AGG 0.534535 3_3:+82150122 Msa0477780:CDS
TGTGTGATTGGGGAGTATAT+TGG 0.535186 3_3:-82148979 None:intergenic
ACAGAGGAAACAGATTATAG+AGG 0.536656 3_3:-82152863 None:intergenic
AACTTCGCACCCCTCATAGC+GGG 0.537198 3_3:+82148669 Msa0477780:CDS
AAACAGTAAAGACTGCTCGC+TGG 0.537456 3_3:+82150294 Msa0477780:CDS
TGGTTTATGTCTGCAGACAA+TGG 0.543436 3_3:+82152199 Msa0477780:CDS
ACACGTCCTGTATATGGTTG+GGG 0.544633 3_3:+82150326 Msa0477780:CDS
GGTAGGAATGAACTGATGTT+GGG 0.544911 3_3:+82149130 Msa0477780:intron
TATGAATTTGTGCCATGGAA+TGG 0.547126 3_3:+82152142 Msa0477780:CDS
CAAGAATCATCATTCATCCA+TGG 0.547722 3_3:+82148445 Msa0477780:exon
GACAGCACATACCTGTTGAC+AGG 0.550591 3_3:-82150439 None:intergenic
CATTGGCAAATATGCATGGC+CGG 0.551128 3_3:+82150413 Msa0477780:CDS
TAGAAGTTGGAGGAGGGCCA+TGG 0.552177 3_3:+82152763 Msa0477780:CDS
GAATCTCAGGTTGGATAGAG+TGG 0.554904 3_3:+82150990 Msa0477780:intron
AGTTGACGATTGGGAGGTGT+AGG 0.555006 3_3:-82148650 None:intergenic
GTTAACGTGTGTTTAGTTGG+AGG 0.556405 3_3:+82153089 Msa0477780:three_prime_UTR
AGAAGAAGAAGAAACAGAGG+AGG 0.556467 3_3:-82148510 None:intergenic
ATATGACGGCAGCAAGGGAA+AGG 0.557692 3_3:+82152613 Msa0477780:CDS
CCCCAGAAATTGTGTGATTG+GGG 0.559399 3_3:-82148989 None:intergenic
AGAAGATATGACGGCAGCAA+GGG 0.559547 3_3:+82152608 Msa0477780:CDS
AAATGAAACCTTGATTCCAA+AGG 0.560360 3_3:-82150160 None:intergenic
CCATGGTTTAACACTTGGAA+GGG 0.565373 3_3:+82152780 Msa0477780:CDS
GCCATGCATATTTGCCAATG+TGG 0.566045 3_3:-82150410 None:intergenic
CCCTTCCAAGTGTTAAACCA+TGG 0.566770 3_3:-82152780 None:intergenic
GCCATGGTTTAACACTTGGA+AGG 0.567755 3_3:+82152779 Msa0477780:CDS
GTTTCATTTGCGATGATGGA+AGG 0.568224 3_3:+82150174 Msa0477780:CDS
TAGAGGCCATCTACATCTAC+CGG 0.569072 3_3:-82152846 None:intergenic
GCAGCTCTAGAAGTTGGAGG+AGG 0.570437 3_3:+82152756 Msa0477780:CDS
TGAGAATCCTGCGTTTCGCA+AGG 0.571820 3_3:+82148868 Msa0477780:CDS
CAGCTTACAACACCATTCCA+TGG 0.573304 3_3:-82152154 None:intergenic
ACAACAACATACTACAAGCC+AGG 0.575692 3_3:-82152894 None:intergenic
GGATAGAGTGGGATGGCGAG+AGG 0.577129 3_3:+82151002 Msa0477780:CDS
ATGGAATGGTGTTGTAAGCT+GGG 0.579542 3_3:+82152156 Msa0477780:CDS
GAAGCAACAACAGAGGATCA+AGG 0.583207 3_3:+82152494 Msa0477780:CDS
AATTAGTACAATATGGACCT+AGG 0.583241 3_3:+82148906 Msa0477780:CDS
GTACACGTCCTGTATATGGT+TGG 0.589209 3_3:+82150324 Msa0477780:CDS
ATTGCACTTACAGCCGCTGG+TGG 0.590020 3_3:+82151455 Msa0477780:CDS
ATGGCAGCTCTAGAAGTTGG+AGG 0.592674 3_3:+82152753 Msa0477780:CDS
AAATTCGAAACCTCCGAACA+AGG 0.593736 3_3:+82149174 Msa0477780:CDS
CATACCTGTTGACAGGCCAC+CGG 0.595777 3_3:-82150432 None:intergenic
AATCTCAGGTTGGATAGAGT+GGG 0.597137 3_3:+82150991 Msa0477780:intron
TTGTATCTCACATAGTGGAG+TGG 0.597174 3_3:+82151383 Msa0477780:intron
ATCTTATTCAGAAAAGAACT+GGG 0.601044 3_3:+82151045 Msa0477780:CDS
GGAGGAACCTCCTTGTTCGG+AGG 0.606309 3_3:-82149184 None:intergenic
TCTACACAGAAGTCAACTGC+TGG 0.606515 3_3:+82150359 Msa0477780:CDS
TTGTGGGAAAGAAGATATGA+CGG 0.606738 3_3:+82152599 Msa0477780:CDS
GTGGAGTGGATGTCTCATGC+AGG 0.608259 3_3:+82151397 Msa0477780:intron
CAGATTGGAATTCACTATGG+TGG 0.609821 3_3:+82152112 Msa0477780:intron
TTGCACTTACAGCCGCTGGT+GGG 0.614149 3_3:+82151456 Msa0477780:CDS
AAGAAGATATGACGGCAGCA+AGG 0.617497 3_3:+82152607 Msa0477780:CDS
ACTGCACGCAAATTCTTCGA+GGG 0.619317 3_3:+82148785 Msa0477780:CDS
TATTCAGAAAAGAACTGGGG+TGG 0.619500 3_3:+82151049 Msa0477780:CDS
ACCACATTGGCAAATATGCA+TGG 0.624184 3_3:+82150409 Msa0477780:CDS
TGCAGACAATGGAAATTATG+TGG 0.631618 3_3:+82152210 Msa0477780:CDS
AGCTGGGAAGTAGCTACTTG+GGG 0.631889 3_3:+82152172 Msa0477780:CDS
CCCCAATCACACAATTTCTG+GGG 0.639513 3_3:+82148989 Msa0477780:CDS
CAGCTCTAGAAGTTGGAGGA+GGG 0.650603 3_3:+82152757 Msa0477780:CDS
AAAGGGGAAGAATGTGCGTG+TGG 0.654123 3_3:-82148540 None:intergenic
GTGCGAAGTTGACGATTGGG+AGG 0.658422 3_3:-82148656 None:intergenic
ATAGCACGGCTAAGAACAGG+TGG 0.660468 3_3:-82152816 None:intergenic
AAGAACGGTTGTGATGAAAG+GGG 0.663217 3_3:-82148556 None:intergenic
AAGCCAGGTGGTTTAAACAG+AGG 0.667539 3_3:-82152879 None:intergenic
TGGCAAATATGCATGGCCGG+TGG 0.673011 3_3:+82150416 Msa0477780:CDS
TCAGGTTGGATAGAGTGGGA+TGG 0.674499 3_3:+82150995 Msa0477780:intron
AATTTGTCTCAACCCACCAG+CGG 0.686070 3_3:-82151468 None:intergenic
CTACCGGTAATCCAATAGCA+CGG 0.689701 3_3:-82152830 None:intergenic
ATTGGACGTGACAAGTGACA+TGG 0.693270 3_3:+82152734 Msa0477780:CDS
AGATAGTTACCCGCTATGAG+GGG 0.698566 3_3:-82148678 None:intergenic
TGAATTAGAAGCAACAACAG+AGG 0.700490 3_3:+82152487 Msa0477780:CDS
CAACTTCGCACCCCTCATAG+CGG 0.701316 3_3:+82148668 Msa0477780:CDS
GCCCCAACACCAGTAAACCT+AGG 0.703555 3_3:-82148923 None:intergenic
ATGAAACCTTGATTCCAAAG+GGG 0.725706 3_3:-82150158 None:intergenic
TTCGAAACCTCCGAACAAGG+AGG 0.737221 3_3:+82149177 Msa0477780:CDS
ACAACATACTACAAGCCAGG+TGG 0.761546 3_3:-82152891 None:intergenic
TCTTATTCAGAAAAGAACTG+GGG 0.762832 3_3:+82151046 Msa0477780:CDS
CATCAAAAGTTACTACACAG+CGG 0.801723 3_3:+82148047 Msa0477780:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGTATAAATATAG+GGG - chr3_3:82148234-82148253 None:intergenic 10.0%
!!! ATTTTTATGTAATTCTAATA+TGG + chr3_3:82149053-82149072 Msa0477780:intron 10.0%
!! TAAAGAATAATAATTATTTC+TGG - chr3_3:82150058-82150077 None:intergenic 10.0%
!! TTGATACAAATTATAATTAT+AGG + chr3_3:82150258-82150277 Msa0477780:intron 10.0%
!!! ATATAATTTTTTTGAACAAT+TGG + chr3_3:82150630-82150649 Msa0477780:intron 10.0%
!! AATACTAAAATTAAAATTGT+GGG + chr3_3:82152583-82152602 Msa0477780:CDS 10.0%
!! AATTAGAGTTATATTGTATT+GGG - chr3_3:82148170-82148189 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - chr3_3:82148171-82148190 None:intergenic 15.0%
!! TTTATTCAAATTATGTGTTT+AGG + chr3_3:82148747-82148766 Msa0477780:intron 15.0%
!!! CAAGTTAATTTTTTTTTGAA+TGG + chr3_3:82149104-82149123 Msa0477780:intron 15.0%
!!! TAATTTTTTTTTGAATGGTT+AGG + chr3_3:82149109-82149128 Msa0477780:intron 15.0%
!! GATAAAGTAAAGTTATTATA+AGG + chr3_3:82149651-82149670 Msa0477780:intron 15.0%
!! TACAAATTATAATTATAGGT+CGG + chr3_3:82150262-82150281 Msa0477780:intron 15.0%
!!! TGTATTTTGATTGAAAATTA+TGG + chr3_3:82151218-82151237 Msa0477780:intron 15.0%
!!! AAATAAATGTTGATGATAAT+AGG + chr3_3:82151609-82151628 Msa0477780:intron 15.0%
!! AATATAATATACTGATAGAA+AGG - chr3_3:82152034-82152053 None:intergenic 15.0%
!! AACATAAAACATAATGTAAT+TGG - chr3_3:82152249-82152268 None:intergenic 15.0%
!!! TCAATTAATTATATTTTTGC+AGG + chr3_3:82152463-82152482 Msa0477780:intron 15.0%
!! GAATACTAAAATTAAAATTG+TGG + chr3_3:82152582-82152601 Msa0477780:CDS 15.0%
!!! ATATTTTCTATGTATAAACA+TGG - chr3_3:82153006-82153025 None:intergenic 15.0%
!!! GACACTTTTTTTTAGTAAAT+GGG - chr3_3:82148101-82148120 None:intergenic 20.0%
!!! AGACACTTTTTTTTAGTAAA+TGG - chr3_3:82148102-82148121 None:intergenic 20.0%
!!! CTTTACTTTATCTTTTGTAA+AGG - chr3_3:82149643-82149662 None:intergenic 20.0%
!!! ACTAGTTTTACTTATTTCAT+TGG + chr3_3:82149913-82149932 Msa0477780:intron 20.0%
!!! CTAAATTTGTTGGAAATTAA+AGG - chr3_3:82149974-82149993 None:intergenic 20.0%
!! ACTTTATCATTAAATTCCTA+TGG - chr3_3:82150116-82150135 None:intergenic 20.0%
!!! AATATTTTGTAGATATCAAG+TGG - chr3_3:82150580-82150599 None:intergenic 20.0%
!!! TATGATAATGAACATTTACA+AGG + chr3_3:82150708-82150727 Msa0477780:intron 20.0%
!! TATTAACAATATTGAATCTC+AGG + chr3_3:82150977-82150996 Msa0477780:intron 20.0%
!!! TTTTCAATCAAAATACAAGA+AGG - chr3_3:82151215-82151234 None:intergenic 20.0%
!!! TTCTATTGTTCTTTTTGTTT+TGG + chr3_3:82151662-82151681 Msa0477780:intron 20.0%
!!! TACATTATGTTTTATGTTGA+TGG + chr3_3:82152251-82152270 Msa0477780:intron 20.0%
!! TTTGTCTTTGATTAGATTAA+TGG + chr3_3:82152674-82152693 Msa0477780:intron 20.0%
!! TTAATGTATAAGAATGTTCA+TGG + chr3_3:82153062-82153081 Msa0477780:three_prime_UTR 20.0%
!! AAAGTGTCTCAAAATAATTG+AGG + chr3_3:82148113-82148132 Msa0477780:intron 25.0%
! GAAAGTGGAATATATTGAAT+TGG - chr3_3:82148212-82148231 None:intergenic 25.0%
! AGAGTATAAGATAAGATTGT+TGG + chr3_3:82148298-82148317 Msa0477780:intron 25.0%
!!! ACTTTGGAATTAGTACAATA+TGG + chr3_3:82148899-82148918 Msa0477780:CDS 25.0%
!!! TTTTTTTTGAATGGTTAGGT+AGG + chr3_3:82149113-82149132 Msa0477780:intron 25.0%
!! TGTCATTTAAACATACATGA+GGG + chr3_3:82149422-82149441 Msa0477780:intron 25.0%
! TTGACTATTAAGACTCTATT+TGG + chr3_3:82149549-82149568 Msa0477780:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG + chr3_3:82149798-82149817 Msa0477780:intron 25.0%
! GAAATAAGTAAAACTAGTTC+AGG - chr3_3:82149911-82149930 None:intergenic 25.0%
!!! TCTGATTAGTCTAAATTTGT+TGG - chr3_3:82149984-82150003 None:intergenic 25.0%
! ATTTAGACTAATCAGACAAA+TGG + chr3_3:82149988-82150007 Msa0477780:intron 25.0%
!! TTTAATGATAAAGTGTTCGA+AGG + chr3_3:82150122-82150141 Msa0477780:CDS 25.0%
! TAGACTAAAACTGAAATGAT+AGG + chr3_3:82150738-82150757 Msa0477780:intron 25.0%
! AATGAATATGAGACTTTAAG+AGG - chr3_3:82150823-82150842 None:intergenic 25.0%
! TAAAAGTTATTCACACTTGT+TGG + chr3_3:82150922-82150941 Msa0477780:intron 25.0%
!! AGTTCTTTTCTGAATAAGAT+GGG - chr3_3:82151045-82151064 None:intergenic 25.0%
! ATCTTATTCAGAAAAGAACT+GGG + chr3_3:82151045-82151064 Msa0477780:CDS 25.0%
! TATTAATCTACAATACTTGC+TGG - chr3_3:82151286-82151305 None:intergenic 25.0%
!!! TTTTTTTGTATCTCACATAG+TGG + chr3_3:82151378-82151397 Msa0477780:intron 25.0%
!!! AATGTTGATGATAATAGGAA+TGG + chr3_3:82151614-82151633 Msa0477780:intron 25.0%
! ATTTGACAAAATCTATAGTG+AGG + chr3_3:82151720-82151739 Msa0477780:intron 25.0%
! TGTTAAAATTTATTGTCGAG+TGG + chr3_3:82151848-82151867 Msa0477780:intron 25.0%
! GTTCTAATTTGAATGTCTAA+TGG + chr3_3:82151900-82151919 Msa0477780:intron 25.0%
! ATTTCATCTGTTTCAAATTG+TGG + chr3_3:82151932-82151951 Msa0477780:intron 25.0%
! ATGAATATACAACTCATACT+TGG + chr3_3:82152326-82152345 Msa0477780:intron 25.0%
! TGAATATACAACTCATACTT+GGG + chr3_3:82152327-82152346 Msa0477780:intron 25.0%
!! AATGTTTTCTTAAAACATGC+TGG + chr3_3:82152420-82152439 Msa0477780:intron 25.0%
TGTATAAATATAGGGGAAAG+TGG - chr3_3:82148227-82148246 None:intergenic 30.0%
ATATGTGTGAAAAACCAAAC+TGG + chr3_3:82148255-82148274 Msa0477780:intron 30.0%
!! CGATGATTAGTTTGAAAGAA+CGG - chr3_3:82148574-82148593 None:intergenic 30.0%
! AGATTGAGATTGTTGTTGTT+CGG - chr3_3:82148612-82148631 None:intergenic 30.0%
AAGTATCAATTCCTGAAAAG+AGG + chr3_3:82148819-82148838 Msa0477780:CDS 30.0%
AATTAGTACAATATGGACCT+AGG + chr3_3:82148906-82148925 Msa0477780:CDS 30.0%
GTATACATAAAACCTACCTT+AGG - chr3_3:82149208-82149227 None:intergenic 30.0%
! TTTAAAATATGCATGACGAC+AGG - chr3_3:82149298-82149317 None:intergenic 30.0%
! CTGTCATTTAAACATACATG+AGG + chr3_3:82149421-82149440 Msa0477780:intron 30.0%
ATTTAAACATACATGAGGGT+AGG + chr3_3:82149426-82149445 Msa0477780:intron 30.0%
! CACTTTTCCAATGAATAAGT+AGG + chr3_3:82149455-82149474 Msa0477780:intron 30.0%
! TTTTCCAATGAATAAGTAGG+TGG + chr3_3:82149458-82149477 Msa0477780:intron 30.0%
AATAAGCTGAAAGCAACTTA+TGG + chr3_3:82149707-82149726 Msa0477780:intron 30.0%
AAGTAGTTGCGAAATTGTTT+GGG - chr3_3:82149762-82149781 None:intergenic 30.0%
TAAGTAGTTGCGAAATTGTT+TGG - chr3_3:82149763-82149782 None:intergenic 30.0%
TTCTGTCACAATTACATTAC+TGG + chr3_3:82150017-82150036 Msa0477780:intron 30.0%
! TACATTACTGGTTATAAGAG+TGG + chr3_3:82150029-82150048 Msa0477780:intron 30.0%
GTTTGCAAATGCTTCTTATT+TGG + chr3_3:82150083-82150102 Msa0477780:intron 30.0%
AATGAAACCTTGATTCCAAA+GGG - chr3_3:82150162-82150181 None:intergenic 30.0%
AAATGAAACCTTGATTCCAA+AGG - chr3_3:82150163-82150182 None:intergenic 30.0%
CAGTTTATGTGAAGCTATTA+TGG + chr3_3:82150514-82150533 Msa0477780:intron 30.0%
! ATGTAATTTGCCAAAGTGAT+TGG + chr3_3:82150547-82150566 Msa0477780:intron 30.0%
ATGATGCTTGACAATTAGTT+TGG + chr3_3:82150761-82150780 Msa0477780:intron 30.0%
! TGATGCTTGACAATTAGTTT+GGG + chr3_3:82150762-82150781 Msa0477780:intron 30.0%
AACAATATTGAATCTCAGGT+TGG + chr3_3:82150981-82151000 Msa0477780:intron 30.0%
! GTTCTTTTCTGAATAAGATG+GGG - chr3_3:82151044-82151063 None:intergenic 30.0%
! CAGTTCTTTTCTGAATAAGA+TGG - chr3_3:82151046-82151065 None:intergenic 30.0%
CATCTTATTCAGAAAAGAAC+TGG + chr3_3:82151044-82151063 Msa0477780:CDS 30.0%
TCTTATTCAGAAAAGAACTG+GGG + chr3_3:82151046-82151065 Msa0477780:CDS 30.0%
! TTTACCCAAAACCATTTTCT+CGG - chr3_3:82151082-82151101 None:intergenic 30.0%
ATTCAAGTAACCATAAAACG+AGG - chr3_3:82151260-82151279 None:intergenic 30.0%
ATGATAATAGGAATGGCTAA+AGG + chr3_3:82151621-82151640 Msa0477780:intron 30.0%
GCTTAAAATCATGAATGATG+TGG + chr3_3:82151820-82151839 Msa0477780:intron 30.0%
GAAACAGATGAAATCACTAA+CGG - chr3_3:82151926-82151945 None:intergenic 30.0%
TGTTTCAAATTGTGGTAACA+AGG + chr3_3:82151940-82151959 Msa0477780:intron 30.0%
!!! TCTTGTGTAGGATTAGTTTT+GGG + chr3_3:82151969-82151988 Msa0477780:intron 30.0%
!! AGTTTTATGAATTTGTGCCA+TGG + chr3_3:82152137-82152156 Msa0477780:CDS 30.0%
GAATATACAACTCATACTTG+GGG + chr3_3:82152328-82152347 Msa0477780:intron 30.0%
TATCTTTACAAGCTTGAGAA+AGG - chr3_3:82152553-82152572 None:intergenic 30.0%
TGTGAAACTGCAGATAATAT+TGG + chr3_3:82152716-82152735 Msa0477780:intron 30.0%
! TCATGGTAAGTACAAACTTT+TGG + chr3_3:82152956-82152975 Msa0477780:three_prime_UTR 30.0%
!! GTAAGTACAAACTTTTGGAA+GGG + chr3_3:82152961-82152980 Msa0477780:three_prime_UTR 30.0%
ATTGTTAACGTGTGTTTAGT+TGG + chr3_3:82153086-82153105 Msa0477780:three_prime_UTR 30.0%
!!! TGTTCTTTTTCAGCTTCAGT+TGG - chr3_3:82148025-82148044 None:intergenic 35.0%
CATCAAAAGTTACTACACAG+CGG + chr3_3:82148047-82148066 Msa0477780:five_prime_UTR 35.0%
AGTAAATGGGTCAGATATTC+CGG - chr3_3:82148088-82148107 None:intergenic 35.0%
AAGAAAAGAACGTGTGATGT+TGG + chr3_3:82148344-82148363 Msa0477780:five_prime_UTR 35.0%
CAAGAATCATCATTCATCCA+TGG + chr3_3:82148445-82148464 Msa0477780:exon 35.0%
ATTCAATAGCTTGGTTTCCA+TGG - chr3_3:82148465-82148484 None:intergenic 35.0%
AGAAGAAGAAGAAGAAACAG+AGG - chr3_3:82148516-82148535 None:intergenic 35.0%
AAAGAACGGTTGTGATGAAA+GGG - chr3_3:82148560-82148579 None:intergenic 35.0%
GTGTTTAGGTATCACTTTGA+TGG + chr3_3:82148761-82148780 Msa0477780:intron 35.0%
TACATAAAACCTACCTTAGG+AGG - chr3_3:82149205-82149224 None:intergenic 35.0%
AATTGAGCTACTGAACTGAA+GGG - chr3_3:82149372-82149391 None:intergenic 35.0%
TAATTGAGCTACTGAACTGA+AGG - chr3_3:82149373-82149392 None:intergenic 35.0%
ACACTCACTACAAATTAGAG+AGG + chr3_3:82149392-82149411 Msa0477780:intron 35.0%
CACTCACTACAAATTAGAGA+GGG + chr3_3:82149393-82149412 Msa0477780:intron 35.0%
! GGTGTTTTCATAAGCTATCA+TGG + chr3_3:82149672-82149691 Msa0477780:intron 35.0%
GAGCTTATGAAAACTGTGTA+TGG - chr3_3:82149738-82149757 None:intergenic 35.0%
ACTTATTTGAGCTCATATGC+TGG - chr3_3:82149788-82149807 None:intergenic 35.0%
! CTTATTTGGTCACTTTCCAT+AGG + chr3_3:82150097-82150116 Msa0477780:intron 35.0%
ATGAAACCTTGATTCCAAAG+GGG - chr3_3:82150161-82150180 None:intergenic 35.0%
TATAGTACACGTCCTGTATA+TGG + chr3_3:82150320-82150339 Msa0477780:CDS 35.0%
!!! TTCCTGTTTTTGAACCACAT+TGG + chr3_3:82150396-82150415 Msa0477780:CDS 35.0%
ACTTTGGCAAATTACATGAG+TGG - chr3_3:82150544-82150563 None:intergenic 35.0%
ATTACATGCCAGTAGAATTG+TGG + chr3_3:82150597-82150616 Msa0477780:intron 35.0%
TAATTATTGCTAGAGCCATG+TGG + chr3_3:82150660-82150679 Msa0477780:intron 35.0%
! GACAATTAGTTTGGGAAGTA+TGG + chr3_3:82150770-82150789 Msa0477780:intron 35.0%
! TTACCCAAAACCATTTTCTC+GGG - chr3_3:82151081-82151100 None:intergenic 35.0%
CATAGAGTTTATCTGCACAT+CGG + chr3_3:82151132-82151151 Msa0477780:intron 35.0%
!!! TGTTGCTTTTCCTCGTTTTA+TGG + chr3_3:82151247-82151266 Msa0477780:intron 35.0%
GACATTTGAAAATGCTGCAT+TGG + chr3_3:82151505-82151524 Msa0477780:CDS 35.0%
TAATAGGAATGGCTAAAGGA+TGG + chr3_3:82151625-82151644 Msa0477780:intron 35.0%
AATAGGAATGGCTAAAGGAT+GGG + chr3_3:82151626-82151645 Msa0477780:intron 35.0%
TATTGCATTACTGACACTTC+AGG + chr3_3:82151781-82151800 Msa0477780:intron 35.0%
!!! CTCTTGTGTAGGATTAGTTT+TGG + chr3_3:82151968-82151987 Msa0477780:intron 35.0%
TATGAATTTGTGCCATGGAA+TGG + chr3_3:82152142-82152161 Msa0477780:CDS 35.0%
TGCAGACAATGGAAATTATG+TGG + chr3_3:82152210-82152229 Msa0477780:CDS 35.0%
CTTAAAACATGCTGGAATTC+TGG + chr3_3:82152428-82152447 Msa0477780:intron 35.0%
TGAATTAGAAGCAACAACAG+AGG + chr3_3:82152487-82152506 Msa0477780:CDS 35.0%
GCTTGTAAAGATACATGCTT+TGG + chr3_3:82152560-82152579 Msa0477780:CDS 35.0%
TTGTGGGAAAGAAGATATGA+CGG + chr3_3:82152599-82152618 Msa0477780:CDS 35.0%
ACAGAGGAAACAGATTATAG+AGG - chr3_3:82152866-82152885 None:intergenic 35.0%
TCCATGTAAAACTTCTCTCT+TGG + chr3_3:82152924-82152943 Msa0477780:three_prime_UTR 35.0%
! ACCAAGAGAGAAGTTTTACA+TGG - chr3_3:82152928-82152947 None:intergenic 35.0%
! GGTAAGTACAAACTTTTGGA+AGG + chr3_3:82152960-82152979 Msa0477780:three_prime_UTR 35.0%
TAAGAGCAGTTTGATTGCGT+TGG - chr3_3:82147993-82148012 None:intergenic 40.0%
GTAAATGGGTCAGATATTCC+GGG - chr3_3:82148087-82148106 None:intergenic 40.0%
! CCAAACTGGCTCAGATATTT+CGG + chr3_3:82148269-82148288 Msa0477780:intron 40.0%
! CAAACTGGCTCAGATATTTC+GGG + chr3_3:82148270-82148289 Msa0477780:intron 40.0%
AGAAGGAGGATTCAATAGCT+TGG - chr3_3:82148474-82148493 None:intergenic 40.0%
GAAGGAAAGTGAAGAAGAGA+AGG - chr3_3:82148491-82148510 None:intergenic 40.0%
AGAAGAAGAAGAAACAGAGG+AGG - chr3_3:82148513-82148532 None:intergenic 40.0%
AAGAACGGTTGTGATGAAAG+GGG - chr3_3:82148559-82148578 None:intergenic 40.0%
GAAAGAACGGTTGTGATGAA+AGG - chr3_3:82148561-82148580 None:intergenic 40.0%
! TGTAGGAGAGTAAATGGGTT+TGG - chr3_3:82148636-82148655 None:intergenic 40.0%
AAGATAGTTACCCGCTATGA+GGG - chr3_3:82148682-82148701 None:intergenic 40.0%
AAAGATAGTTACCCGCTATG+AGG - chr3_3:82148683-82148702 None:intergenic 40.0%
CAATATGGACCTAGGTTTAC+TGG + chr3_3:82148914-82148933 Msa0477780:CDS 40.0%
! TGTGTGATTGGGGAGTATAT+TGG - chr3_3:82148982-82149001 None:intergenic 40.0%
TCCCCAATCACACAATTTCT+GGG + chr3_3:82148988-82149007 Msa0477780:CDS 40.0%
TCCCCAGAAATTGTGTGATT+GGG - chr3_3:82148993-82149012 None:intergenic 40.0%
TTCCCCAGAAATTGTGTGAT+TGG - chr3_3:82148994-82149013 None:intergenic 40.0%
AGGTAGGAATGAACTGATGT+TGG + chr3_3:82149129-82149148 Msa0477780:intron 40.0%
GGTAGGAATGAACTGATGTT+GGG + chr3_3:82149130-82149149 Msa0477780:intron 40.0%
! GATGTTGGGTAACACTTTTG+CGG + chr3_3:82149144-82149163 Msa0477780:CDS 40.0%
AAATTCGAAACCTCCGAACA+AGG + chr3_3:82149174-82149193 Msa0477780:CDS 40.0%
CTCACCACCTACTTATTCAT+TGG - chr3_3:82149465-82149484 None:intergenic 40.0%
AATAAGTAGGTGGTGAGTGT+TGG + chr3_3:82149468-82149487 Msa0477780:intron 40.0%
ATAAGTAGGTGGTGAGTGTT+GGG + chr3_3:82149469-82149488 Msa0477780:intron 40.0%
TGCGTCATTTAAGCATACCT+TGG + chr3_3:82149500-82149519 Msa0477780:intron 40.0%
GCGTCATTTAAGCATACCTT+GGG + chr3_3:82149501-82149520 Msa0477780:intron 40.0%
CGTCATTTAAGCATACCTTG+GGG + chr3_3:82149502-82149521 Msa0477780:intron 40.0%
GTCATTTAAGCATACCTTGG+GGG + chr3_3:82149503-82149522 Msa0477780:intron 40.0%
AGTCAATCCAAATAGGTCCT+AGG + chr3_3:82149805-82149824 Msa0477780:intron 40.0%
GTTAACACCTAGGACCTATT+TGG - chr3_3:82149815-82149834 None:intergenic 40.0%
TAACAGGGAAGTTAACACCT+AGG - chr3_3:82149825-82149844 None:intergenic 40.0%
TAGTCGTTGACACTCTTTCA+AGG + chr3_3:82149936-82149955 Msa0477780:intron 40.0%
AGTCGTTGACACTCTTTCAA+GGG + chr3_3:82149937-82149956 Msa0477780:intron 40.0%
CAAGGTTTCATTTGCGATGA+TGG + chr3_3:82150170-82150189 Msa0477780:CDS 40.0%
!! GTTTCATTTGCGATGATGGA+AGG + chr3_3:82150174-82150193 Msa0477780:CDS 40.0%
TACACGTCCTGTATATGGTT+GGG + chr3_3:82150325-82150344 Msa0477780:CDS 40.0%
TATATGGTTGGGGTGATGTT+GGG + chr3_3:82150336-82150355 Msa0477780:CDS 40.0%
TGCCAATGTGGTTCAAAAAC+AGG - chr3_3:82150401-82150420 None:intergenic 40.0%
ACCACATTGGCAAATATGCA+TGG + chr3_3:82150409-82150428 Msa0477780:CDS 40.0%
TGCCAGTAGAATTGTGGTAT+TGG + chr3_3:82150603-82150622 Msa0477780:intron 40.0%
GTCCAATACCACAATTCTAC+TGG - chr3_3:82150608-82150627 None:intergenic 40.0%
! TAGTTTGGGAAGTATGGTGT+TGG + chr3_3:82150776-82150795 Msa0477780:intron 40.0%
! TTTAAGAGGAGCACATTCCA+AGG - chr3_3:82150809-82150828 None:intergenic 40.0%
GTCTCATATTCATTTCTCGC+CGG + chr3_3:82150829-82150848 Msa0477780:intron 40.0%
!! AATCTCAGGTTGGATAGAGT+GGG + chr3_3:82150991-82151010 Msa0477780:intron 40.0%
TATTCAGAAAAGAACTGGGG+TGG + chr3_3:82151049-82151068 Msa0477780:CDS 40.0%
! GTTCCCGAGAAAATGGTTTT+GGG + chr3_3:82151075-82151094 Msa0477780:CDS 40.0%
!! TTATCTGCACATCGGTTTCA+TGG + chr3_3:82151140-82151159 Msa0477780:intron 40.0%
AACGAGGAAAAGCAACATTC+TGG - chr3_3:82151244-82151263 None:intergenic 40.0%
! TTGTATCTCACATAGTGGAG+TGG + chr3_3:82151383-82151402 Msa0477780:intron 40.0%
! GCTCAGTGTAATGTTTTCGA+AGG + chr3_3:82151419-82151438 Msa0477780:CDS 40.0%
!!! AATGTTTTCGAAGGTGCTAG+TGG + chr3_3:82151428-82151447 Msa0477780:CDS 40.0%
TCAAATGTCTCAGTTAGTCC+CGG - chr3_3:82151494-82151513 None:intergenic 40.0%
! GCTGCATTGGTAACTTCATA+TGG + chr3_3:82151518-82151537 Msa0477780:intron 40.0%
ATAGGAATGGCTAAAGGATG+GGG + chr3_3:82151627-82151646 Msa0477780:intron 40.0%
GTCTATTTGCCTTCTTCTGT+TGG + chr3_3:82151991-82152010 Msa0477780:intron 40.0%
ATGTAGTGACCAACAGAAGA+AGG - chr3_3:82152003-82152022 None:intergenic 40.0%
TGTTGCAAATTAGCGCAGAT+TGG + chr3_3:82152097-82152116 Msa0477780:intron 40.0%
CAGATTGGAATTCACTATGG+TGG + chr3_3:82152112-82152131 Msa0477780:intron 40.0%
!! ATGGAATGGTGTTGTAAGCT+GGG + chr3_3:82152156-82152175 Msa0477780:CDS 40.0%
AAGTAGCTACTTGGGGTTAT+TGG + chr3_3:82152179-82152198 Msa0477780:CDS 40.0%
TGGTTTATGTCTGCAGACAA+TGG + chr3_3:82152199-82152218 Msa0477780:CDS 40.0%
CAACTCATACTTGGGGTTAT+TGG + chr3_3:82152335-82152354 Msa0477780:intron 40.0%
CCATGGTTTAACACTTGGAA+GGG + chr3_3:82152780-82152799 Msa0477780:CDS 40.0%
TTTCCTCTGTTTAAACCACC+TGG + chr3_3:82152876-82152895 Msa0477780:CDS 40.0%
ACAACAACATACTACAAGCC+AGG - chr3_3:82152897-82152916 None:intergenic 40.0%
TCTCTTGGTAGAGAGTTTCA+TGG + chr3_3:82152939-82152958 Msa0477780:three_prime_UTR 40.0%
GTTAACGTGTGTTTAGTTGG+AGG + chr3_3:82153089-82153108 Msa0477780:three_prime_UTR 40.0%
CCGAAATATCTGAGCCAGTT+TGG - chr3_3:82148272-82148291 None:intergenic 45.0%
GGAAAGTGAAGAAGAGAAGG+AGG - chr3_3:82148488-82148507 None:intergenic 45.0%
GAAGAAGAAACAGAGGAGGA+AGG - chr3_3:82148509-82148528 None:intergenic 45.0%
! GGAGGTGTAGGAGAGTAAAT+GGG - chr3_3:82148641-82148660 None:intergenic 45.0%
AGATAGTTACCCGCTATGAG+GGG - chr3_3:82148681-82148700 None:intergenic 45.0%
AACTGCACGCAAATTCTTCG+AGG + chr3_3:82148784-82148803 Msa0477780:CDS 45.0%
ACTGCACGCAAATTCTTCGA+GGG + chr3_3:82148785-82148804 Msa0477780:CDS 45.0%
! CAGAAGCTTTGCCTCTTTTC+AGG - chr3_3:82148833-82148852 None:intergenic 45.0%
!! TCGCAAGGAATTGTCGACTT+TGG + chr3_3:82148883-82148902 Msa0477780:CDS 45.0%
GACCTAGGTTTACTGGTGTT+GGG + chr3_3:82148921-82148940 Msa0477780:CDS 45.0%
! ACCTAGGTTTACTGGTGTTG+GGG + chr3_3:82148922-82148941 Msa0477780:CDS 45.0%
CTCCCCAATCACACAATTTC+TGG + chr3_3:82148987-82149006 Msa0477780:CDS 45.0%
CCCCAGAAATTGTGTGATTG+GGG - chr3_3:82148992-82149011 None:intergenic 45.0%
CCCCAATCACACAATTTCTG+GGG + chr3_3:82148989-82149008 Msa0477780:CDS 45.0%
TTAGGAGGAACCTCCTTGTT+CGG - chr3_3:82149190-82149209 None:intergenic 45.0%
GAAGAAGAAAATGACCCCCA+AGG - chr3_3:82149520-82149539 None:intergenic 45.0%
GCAAAGATGCAGCAGTAACA+GGG - chr3_3:82149840-82149859 None:intergenic 45.0%
AGCAAAGATGCAGCAGTAAC+AGG - chr3_3:82149841-82149860 None:intergenic 45.0%
!!! GTTTTCAAGTCACTCCCCTT+TGG + chr3_3:82150144-82150163 Msa0477780:CDS 45.0%
AAACAGTAAAGACTGCTCGC+TGG + chr3_3:82150294-82150313 Msa0477780:CDS 45.0%
AACAGTAAAGACTGCTCGCT+GGG + chr3_3:82150295-82150314 Msa0477780:CDS 45.0%
GTACACGTCCTGTATATGGT+TGG + chr3_3:82150324-82150343 Msa0477780:CDS 45.0%
ACACGTCCTGTATATGGTTG+GGG + chr3_3:82150326-82150345 Msa0477780:CDS 45.0%
ACATCACCCCAACCATATAC+AGG - chr3_3:82150335-82150354 None:intergenic 45.0%
GTATATGGTTGGGGTGATGT+TGG + chr3_3:82150335-82150354 Msa0477780:CDS 45.0%
TCTACACAGAAGTCAACTGC+TGG + chr3_3:82150359-82150378 Msa0477780:CDS 45.0%
GCCATGCATATTTGCCAATG+TGG - chr3_3:82150413-82150432 None:intergenic 45.0%
CATTGGCAAATATGCATGGC+CGG + chr3_3:82150413-82150432 Msa0477780:CDS 45.0%
TGGCTAGATGCCAATCACTT+TGG - chr3_3:82150560-82150579 None:intergenic 45.0%
! TTTCTCGCCGGTGTCAATTT+CGG + chr3_3:82150841-82150860 Msa0477780:intron 45.0%
!! TCAATTTCGGTGGGCTAGTT+TGG + chr3_3:82150854-82150873 Msa0477780:intron 45.0%
!! GAATCTCAGGTTGGATAGAG+TGG + chr3_3:82150990-82151009 Msa0477780:intron 45.0%
! CGTTCCCGAGAAAATGGTTT+TGG + chr3_3:82151074-82151093 Msa0477780:CDS 45.0%
TGCAACACTCATCGAAACAC+TGG - chr3_3:82151347-82151366 None:intergenic 45.0%
AATTTGTCTCAACCCACCAG+CGG - chr3_3:82151471-82151490 None:intergenic 45.0%
!! TGGTGGGTTGAGACAAATTC+CGG + chr3_3:82151472-82151491 Msa0477780:CDS 45.0%
TATTGTCGAGTGGCTCAAGT+AGG + chr3_3:82151858-82151877 Msa0477780:intron 45.0%
!! ACAAGGTGTTGCTCTTGTGT+AGG + chr3_3:82151957-82151976 Msa0477780:intron 45.0%
GCGCAGATTGGAATTCACTA+TGG + chr3_3:82152109-82152128 Msa0477780:intron 45.0%
CAGCTTACAACACCATTCCA+TGG - chr3_3:82152157-82152176 None:intergenic 45.0%
!! CATGGAATGGTGTTGTAAGC+TGG + chr3_3:82152155-82152174 Msa0477780:CDS 45.0%
TAAGCTGGGAAGTAGCTACT+TGG + chr3_3:82152170-82152189 Msa0477780:CDS 45.0%
AAGCTGGGAAGTAGCTACTT+GGG + chr3_3:82152171-82152190 Msa0477780:CDS 45.0%
! CTGGAATTCTGGCTAATGAC+AGG + chr3_3:82152439-82152458 Msa0477780:intron 45.0%
GAAGCAACAACAGAGGATCA+AGG + chr3_3:82152494-82152513 Msa0477780:CDS 45.0%
AAGAAGATATGACGGCAGCA+AGG + chr3_3:82152607-82152626 Msa0477780:CDS 45.0%
AGAAGATATGACGGCAGCAA+GGG + chr3_3:82152608-82152627 Msa0477780:CDS 45.0%
ATTGGACGTGACAAGTGACA+TGG + chr3_3:82152734-82152753 Msa0477780:CDS 45.0%
GCCATGGTTTAACACTTGGA+AGG + chr3_3:82152779-82152798 Msa0477780:CDS 45.0%
CCCTTCCAAGTGTTAAACCA+TGG - chr3_3:82152783-82152802 None:intergenic 45.0%
! TAGCCGTGCTATTGGATTAC+CGG + chr3_3:82152827-82152846 Msa0477780:CDS 45.0%
CTACCGGTAATCCAATAGCA+CGG - chr3_3:82152833-82152852 None:intergenic 45.0%
GGATTACCGGTAGATGTAGA+TGG + chr3_3:82152840-82152859 Msa0477780:CDS 45.0%
TAGAGGCCATCTACATCTAC+CGG - chr3_3:82152849-82152868 None:intergenic 45.0%
AAGCCAGGTGGTTTAAACAG+AGG - chr3_3:82152882-82152901 None:intergenic 45.0%
ACAACATACTACAAGCCAGG+TGG - chr3_3:82152894-82152913 None:intergenic 45.0%
!! TAAAAAAATGTATAAATATA+GGG - chr3_3:82148235-82148254 None:intergenic 5.0%
!! TTAAAAAAATGTATAAATAT+AGG - chr3_3:82148236-82148255 None:intergenic 5.0%
ATGGGTCAGATATTCCGGGA+CGG - chr3_3:82148083-82148102 None:intergenic 50.0%
CTGGCTCAGATATTTCGGGA+TGG + chr3_3:82148274-82148293 Msa0477780:intron 50.0%
AAAGGGGAAGAATGTGCGTG+TGG - chr3_3:82148543-82148562 None:intergenic 50.0%
! GGGAGGTGTAGGAGAGTAAA+TGG - chr3_3:82148642-82148661 None:intergenic 50.0%
! AGTTGACGATTGGGAGGTGT+AGG - chr3_3:82148653-82148672 None:intergenic 50.0%
CACGCAAATTCTTCGAGGGT+TGG + chr3_3:82148789-82148808 Msa0477780:CDS 50.0%
TGAGAATCCTGCGTTTCGCA+AGG + chr3_3:82148868-82148887 Msa0477780:CDS 50.0%
GACAATTCCTTGCGAAACGC+AGG - chr3_3:82148878-82148897 None:intergenic 50.0%
GGACCTAGGTTTACTGGTGT+TGG + chr3_3:82148920-82148939 Msa0477780:CDS 50.0%
! GGTGTTGGGGCACAAATTCT+TGG + chr3_3:82148935-82148954 Msa0477780:CDS 50.0%
TTCGAAACCTCCGAACAAGG+AGG + chr3_3:82149177-82149196 Msa0477780:CDS 50.0%
GAACAAGGAGGTTCCTCCTA+AGG + chr3_3:82149189-82149208 Msa0477780:CDS 50.0%
AAGGAGGTTCCTCCTAAGGT+AGG + chr3_3:82149193-82149212 Msa0477780:intron 50.0%
!! GTCACTCCCCTTTGGAATCA+AGG + chr3_3:82150152-82150171 Msa0477780:CDS 50.0%
GACAGCACATACCTGTTGAC+AGG - chr3_3:82150442-82150461 None:intergenic 50.0%
CCTATTCCTGACTCACCACA+TGG - chr3_3:82150678-82150697 None:intergenic 50.0%
CCATGTGGTGAGTCAGGAAT+AGG + chr3_3:82150675-82150694 Msa0477780:intron 50.0%
!! TGGGAAGTATGGTGTTGGCT+TGG + chr3_3:82150781-82150800 Msa0477780:intron 50.0%
!! GGGAAGTATGGTGTTGGCTT+GGG + chr3_3:82150782-82150801 Msa0477780:intron 50.0%
!! GGAAGTATGGTGTTGGCTTG+GGG + chr3_3:82150783-82150802 Msa0477780:intron 50.0%
TAGCCCACCGAAATTGACAC+CGG - chr3_3:82150851-82150870 None:intergenic 50.0%
!! TCAGGTTGGATAGAGTGGGA+TGG + chr3_3:82150995-82151014 Msa0477780:intron 50.0%
GAAATTGCACTTACAGCCGC+TGG + chr3_3:82151452-82151471 Msa0477780:CDS 50.0%
!! GGTGGGTTGAGACAAATTCC+GGG + chr3_3:82151473-82151492 Msa0477780:CDS 50.0%
AGCTGGGAAGTAGCTACTTG+GGG + chr3_3:82152172-82152191 Msa0477780:CDS 50.0%
GAAAGGCCAGCTTCTGATGT+TGG - chr3_3:82152536-82152555 None:intergenic 50.0%
ATATGACGGCAGCAAGGGAA+AGG + chr3_3:82152613-82152632 Msa0477780:CDS 50.0%
!! GACATGGCAGCTCTAGAAGT+TGG + chr3_3:82152750-82152769 Msa0477780:CDS 50.0%
!! ATGGCAGCTCTAGAAGTTGG+AGG + chr3_3:82152753-82152772 Msa0477780:CDS 50.0%
!! CAGCTCTAGAAGTTGGAGGA+GGG + chr3_3:82152757-82152776 Msa0477780:CDS 50.0%
GAGGGCCATGGTTTAACACT+TGG + chr3_3:82152775-82152794 Msa0477780:CDS 50.0%
ATAGCACGGCTAAGAACAGG+TGG - chr3_3:82152819-82152838 None:intergenic 50.0%
CCAATAGCACGGCTAAGAAC+AGG - chr3_3:82152822-82152841 None:intergenic 50.0%
CCTGTTCTTAGCCGTGCTAT+TGG + chr3_3:82152819-82152838 Msa0477780:CDS 50.0%
GTCAGATATTCCGGGACGGA+AGG - chr3_3:82148079-82148098 None:intergenic 55.0%
GTGCGAAGTTGACGATTGGG+AGG - chr3_3:82148659-82148678 None:intergenic 55.0%
GGGGTGCGAAGTTGACGATT+GGG - chr3_3:82148662-82148681 None:intergenic 55.0%
! AGGGGTGCGAAGTTGACGAT+TGG - chr3_3:82148663-82148682 None:intergenic 55.0%
CAACTTCGCACCCCTCATAG+CGG + chr3_3:82148668-82148687 Msa0477780:CDS 55.0%
AACTTCGCACCCCTCATAGC+GGG + chr3_3:82148669-82148688 Msa0477780:CDS 55.0%
GCCCCAACACCAGTAAACCT+AGG - chr3_3:82148926-82148945 None:intergenic 55.0%
CACAGAAGTCAACTGCTGGC+TGG + chr3_3:82150363-82150382 Msa0477780:CDS 55.0%
TGGCAAATATGCATGGCCGG+TGG + chr3_3:82150416-82150435 Msa0477780:CDS 55.0%
CATACCTGTTGACAGGCCAC+CGG - chr3_3:82150435-82150454 None:intergenic 55.0%
CTAGAGCCATGTGGTGAGTC+AGG + chr3_3:82150669-82150688 Msa0477780:intron 55.0%
! TCGCCGGTGTCAATTTCGGT+GGG + chr3_3:82150845-82150864 Msa0477780:intron 55.0%
! GTGGAGCGTTCCCGAGAAAA+TGG + chr3_3:82151068-82151087 Msa0477780:CDS 55.0%
GTGGAGTGGATGTCTCATGC+AGG + chr3_3:82151397-82151416 Msa0477780:intron 55.0%
ATTGCACTTACAGCCGCTGG+TGG + chr3_3:82151455-82151474 Msa0477780:CDS 55.0%
TTGCACTTACAGCCGCTGGT+GGG + chr3_3:82151456-82151475 Msa0477780:CDS 55.0%
CGTGCTCCAACATCAGAAGC+TGG + chr3_3:82152527-82152546 Msa0477780:CDS 55.0%
!! GCAGCTCTAGAAGTTGGAGG+AGG + chr3_3:82152756-82152775 Msa0477780:CDS 55.0%
TAGAAGTTGGAGGAGGGCCA+TGG + chr3_3:82152763-82152782 Msa0477780:CDS 55.0%
GCGGTATACTCCTTCCGTCC+CGG + chr3_3:82148066-82148085 Msa0477780:intron 60.0%
GGAGGAACCTCCTTGTTCGG+AGG - chr3_3:82149187-82149206 None:intergenic 60.0%
!! ATGGTGTTGGCTTGGGGCCT+TGG + chr3_3:82150789-82150808 Msa0477780:intron 60.0%
! CTCGCCGGTGTCAATTTCGG+TGG + chr3_3:82150844-82150863 Msa0477780:intron 60.0%
GGATAGAGTGGGATGGCGAG+AGG + chr3_3:82151002-82151021 Msa0477780:CDS 60.0%
ATGGCCGGTGGCCTGTCAAC+AGG + chr3_3:82150428-82150447 Msa0477780:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 82147955 82153112 82147955 ID=Msa0477780;Name=Msa0477780
chr3_3 mRNA 82147955 82153112 82147955 ID=Msa0477780-mRNA-1;Parent=Msa0477780;Name=Msa0477780-mRNA-1;_AED=0.23;_eAED=0.24;_QI=280|0.9|0.81|1|0.8|0.81|11|207|498
chr3_3 exon 82147955 82148070 82147955 ID=Msa0477780-mRNA-1:exon:22820;Parent=Msa0477780-mRNA-1
chr3_3 exon 82148300 82148690 82148300 ID=Msa0477780-mRNA-1:exon:22821;Parent=Msa0477780-mRNA-1
chr3_3 exon 82148769 82149013 82148769 ID=Msa0477780-mRNA-1:exon:22822;Parent=Msa0477780-mRNA-1
chr3_3 exon 82149131 82149210 82149131 ID=Msa0477780-mRNA-1:exon:22823;Parent=Msa0477780-mRNA-1
chr3_3 exon 82150119 82150195 82150119 ID=Msa0477780-mRNA-1:exon:22824;Parent=Msa0477780-mRNA-1
chr3_3 exon 82150280 82150449 82150280 ID=Msa0477780-mRNA-1:exon:22825;Parent=Msa0477780-mRNA-1
chr3_3 exon 82150999 82151123 82150999 ID=Msa0477780-mRNA-1:exon:22826;Parent=Msa0477780-mRNA-1
chr3_3 exon 82151398 82151526 82151398 ID=Msa0477780-mRNA-1:exon:22827;Parent=Msa0477780-mRNA-1
chr3_3 exon 82152115 82152231 82152115 ID=Msa0477780-mRNA-1:exon:22828;Parent=Msa0477780-mRNA-1
chr3_3 exon 82152485 82152634 82152485 ID=Msa0477780-mRNA-1:exon:22829;Parent=Msa0477780-mRNA-1
chr3_3 exon 82152729 82153112 82152729 ID=Msa0477780-mRNA-1:exon:22830;Parent=Msa0477780-mRNA-1
chr3_3 five_prime_UTR 82147955 82148070 82147955 ID=Msa0477780-mRNA-1:five_prime_utr;Parent=Msa0477780-mRNA-1
chr3_3 five_prime_UTR 82148300 82148463 82148300 ID=Msa0477780-mRNA-1:five_prime_utr;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82148464 82148690 82148464 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82148769 82149013 82148769 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82149131 82149210 82149131 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82150119 82150195 82150119 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82150280 82150449 82150280 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82150999 82151123 82150999 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82151398 82151526 82151398 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82152115 82152231 82152115 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82152485 82152634 82152485 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 CDS 82152729 82152905 82152729 ID=Msa0477780-mRNA-1:cds;Parent=Msa0477780-mRNA-1
chr3_3 three_prime_UTR 82152906 82153112 82152906 ID=Msa0477780-mRNA-1:three_prime_utr;Parent=Msa0477780-mRNA-1
Gene Sequence

>Msa0477780

ATGGAAACCAAGCTATTGAATCCTCCTTCTCTTCTTCACTTTCCTTCCTCCTCTGTTTCTTCTTCTTCTTCTTCATCCACACGCACATTCTTCCCCTTTCATCACAACCGTTCTTTCAAACTAATCATCGCTCACAATTCACATACCGAACAACAACAATCTCAATCTTCCAAACCCATTTACTCTCCTACACCTCCCAATCGTCAACTTCGCACCCCTCATAGCGGGTATCACTTTGATGGAACTGCACGCAAATTCTTCGAGGGTTGGTACTTCAAAGTATCAATTCCTGAAAAGAGGCAAAGCTTCTGCTTTATGTATTCAGTTGAGAATCCTGCGTTTCGCAAGGAATTGTCGACTTTGGAATTAGTACAATATGGACCTAGGTTTACTGGTGTTGGGGCACAAATTCTTGGTGCTGATGATAAATACATTTGCCAATATACTCCCCAATCACACAATTTCTGGGGAAGTAGGAATGAACTGATGTTGGGTAACACTTTTGCGGCTAAGCAAAATTCGAAACCTCCGAACAAGGAGGTTCCTCCTAAGGAATTTAATGATAAAGTGTTCGAAGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCGGATTATGTAGAAACAGTAAAGACTGCTCGCTGGGAGTATAGTACACGTCCTGTATATGGTTGGGGTGATGTTGGGTCTACACAGAAGTCAACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAACCACATTGGCAAATATGCATGGCCGGTGGCCTGTCAACAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGTGGAGCGTTCCCGAGAAAATGGTTTTGGGTAAAAAAACTCTCTTTCTTCACTGAATGGAGTGGATGTCTCATGCAGGCTCAGTGTAATGTTTTCGAAGGTGCTAGTGGAGAAATTGCACTTACAGCCGCTGGTGGGTTGAGACAAATTCCGGGACTAACTGAGACATTTGAAAATGCTGCATTGATTGGAATTCACTATGGTGGAAAGTTTTATGAATTTGTGCCATGGAATGGTGTTGTAAGCTGGGAAGTAGCTACTTGGGGTTATTGGTTTATGTCTGCAGACAATGGAAATTATGTGGTTGAATTAGAAGCAACAACAGAGGATCAAGGTACTACATTGCGTGCTCCAACATCAGAAGCTGGCCTTTCTCAAGCTTGTAAAGATACATGCTTTGGAATACTAAAATTAAAATTGTGGGAAAGAAGATATGACGGCAGCAAGGGAAAGATAATATTGGACGTGACAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGGCCATGGTTTAACACTTGGAAGGGAAAAACATCAACTCCACCTGTTCTTAGCCGTGCTATTGGATTACCGGTAGATGTAGATGGCCTCTATAATCTGTTTCCTCTGTTTAAACCACCTGGCTTGTAG
Protein sequence

>Msa0477780

METKLLNPPSLLHFPSSSVSSSSSSSTRTFFPFHHNRSFKLIIAHNSHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYFKVSIPEKRQSFCFMYSVENPAFRKELSTLELVQYGPRFTGVGAQILGADDKYICQYTPQSHNFWGSRNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVFEGFQVTPLWNQGFICDDGRSDYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWVKKLSFFTEWSGCLMQAQCNVFEGASGEIALTAAGGLRQIPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDQGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTSTPPVLSRAIGLPVDVDGLYNLFPLFKPPGL*