Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158880 | A0A072VHZ9 | 96.802 | 344 | 11 | 0 | 1 | 344 | 1 | 344 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067360 | Msa0158880 | 0.818359 | 2.042766e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158880 | MtrunA17_Chr1g0171181 | 88.663 | 344 | 10 | 1 | 1 | 344 | 1 | 315 | 0.0 | 618 |
| Msa0158880 | MtrunA17_Chr1g0178721 | 61.877 | 341 | 129 | 1 | 1 | 340 | 33 | 373 | 2.18e-163 | 461 |
| Msa0158880 | MtrunA17_Chr1g0178741 | 61.877 | 341 | 129 | 1 | 1 | 340 | 58 | 398 | 1.65e-162 | 459 |
| Msa0158880 | MtrunA17_Chr2g0321341 | 49.565 | 345 | 164 | 4 | 1 | 342 | 1 | 338 | 6.13e-125 | 362 |
| Msa0158880 | MtrunA17_Chr2g0321351 | 45.752 | 306 | 160 | 3 | 37 | 341 | 45 | 345 | 5.92e-98 | 294 |
| Msa0158880 | MtrunA17_Chr4g0026421 | 41.477 | 352 | 187 | 6 | 1 | 341 | 1 | 344 | 1.14e-96 | 291 |
| Msa0158880 | MtrunA17_Chr3g0136021 | 44.444 | 306 | 159 | 5 | 41 | 342 | 130 | 428 | 6.75e-90 | 276 |
| Msa0158880 | MtrunA17_Chr4g0029971 | 29.595 | 321 | 185 | 8 | 36 | 324 | 119 | 430 | 1.05e-37 | 140 |
| Msa0158880 | MtrunA17_Chr7g0263721 | 25.895 | 363 | 237 | 6 | 5 | 338 | 121 | 480 | 4.46e-36 | 136 |
| Msa0158880 | MtrunA17_Chr2g0321371 | 52.941 | 51 | 24 | 0 | 274 | 324 | 1 | 51 | 2.26e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158880 | AT1G74300.1 | 64.742 | 329 | 114 | 2 | 14 | 340 | 16 | 344 | 1.17e-155 | 441 |
| Msa0158880 | AT2G36290.1 | 59.184 | 343 | 139 | 1 | 1 | 342 | 17 | 359 | 2.30e-153 | 435 |
| Msa0158880 | AT2G36290.2 | 59.184 | 343 | 139 | 1 | 1 | 342 | 3 | 345 | 3.46e-153 | 434 |
| Msa0158880 | AT1G74280.1 | 60.125 | 321 | 127 | 1 | 21 | 340 | 41 | 361 | 2.21e-142 | 408 |
| Msa0158880 | AT1G74290.1 | 59.202 | 326 | 128 | 4 | 15 | 336 | 34 | 358 | 1.65e-138 | 398 |
| Msa0158880 | AT3G48410.1 | 52.059 | 340 | 163 | 0 | 2 | 341 | 33 | 372 | 9.66e-138 | 396 |
| Msa0158880 | AT3G54240.1 | 54.054 | 333 | 153 | 0 | 8 | 340 | 12 | 344 | 2.68e-137 | 394 |
| Msa0158880 | AT3G48410.2 | 52.059 | 340 | 163 | 0 | 2 | 341 | 75 | 414 | 2.88e-137 | 397 |
| Msa0158880 | AT5G22460.2 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 3.19e-133 | 383 |
| Msa0158880 | AT5G22460.3 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 3.19e-133 | 383 |
| Msa0158880 | AT5G22460.1 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 3.19e-133 | 383 |
| Msa0158880 | AT1G74300.2 | 63.265 | 245 | 89 | 1 | 97 | 340 | 1 | 245 | 1.95e-111 | 324 |
| Msa0158880 | AT3G03240.1 | 44.702 | 302 | 159 | 4 | 39 | 338 | 35 | 330 | 2.42e-94 | 284 |
| Msa0158880 | AT3G44510.2 | 43.464 | 306 | 163 | 4 | 41 | 341 | 8 | 308 | 3.97e-87 | 265 |
| Msa0158880 | AT3G03230.1 | 42.484 | 306 | 167 | 4 | 39 | 342 | 35 | 333 | 8.04e-87 | 265 |
| Msa0158880 | AT1G08310.2 | 41.720 | 314 | 170 | 5 | 33 | 341 | 2 | 307 | 2.30e-84 | 258 |
| Msa0158880 | AT1G08310.1 | 42.038 | 314 | 166 | 6 | 33 | 341 | 2 | 304 | 3.95e-83 | 255 |
| Msa0158880 | AT3G44510.3 | 47.959 | 196 | 97 | 2 | 41 | 236 | 8 | 198 | 8.49e-61 | 195 |
| Msa0158880 | AT1G08310.3 | 46.890 | 209 | 105 | 3 | 33 | 240 | 2 | 205 | 9.88e-61 | 195 |
| Msa0158880 | AT3G44510.1 | 37.255 | 204 | 121 | 3 | 143 | 341 | 1 | 202 | 2.57e-44 | 152 |
| Msa0158880 | AT3G44510.5 | 37.255 | 204 | 121 | 3 | 143 | 341 | 1 | 202 | 2.57e-44 | 152 |
| Msa0158880 | AT3G44510.4 | 37.255 | 204 | 121 | 3 | 143 | 341 | 1 | 202 | 2.57e-44 | 152 |
| Msa0158880 | AT5G02970.1 | 23.919 | 347 | 235 | 5 | 5 | 324 | 126 | 470 | 9.88e-31 | 122 |
| Msa0158880 | AT3G09690.1 | 26.154 | 325 | 193 | 9 | 36 | 324 | 160 | 473 | 2.24e-28 | 115 |
| Msa0158880 | AT3G09690.2 | 26.154 | 325 | 193 | 9 | 36 | 324 | 160 | 473 | 2.24e-28 | 115 |
Find 91 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTGAGGAATAAATTTA+AGG | 0.217494 | 1_4:+28764028 | None:intergenic |
| CTTTATCCTTGGTGCTGTTA+TGG | 0.220069 | 1_4:+28764446 | None:intergenic |
| TTGACTGGTTCTTTGTTTCT+AGG | 0.222938 | 1_4:-28764581 | Msa0158880:five_prime_UTR |
| TCTGGTGGTTTACTCAAAAT+TGG | 0.249224 | 1_4:-28761382 | Msa0158880:CDS |
| TATGGGTGGACAAGCTGTTT+GGG | 0.260265 | 1_4:-28764055 | Msa0158880:CDS |
| CGATAATTGGATTTGGAACT+TGG | 0.264289 | 1_4:-28761114 | Msa0158880:CDS |
| TTTATCCTTGGTGCTGTTAT+GGG | 0.264845 | 1_4:+28764447 | None:intergenic |
| CTGGTGAACCACATGTTCTT+GGG | 0.267606 | 1_4:+28764478 | None:intergenic |
| ATATGTCGTGACACGATAAT+TGG | 0.275006 | 1_4:-28761127 | Msa0158880:CDS |
| TTGTGTTGGTTGCTCATAAT+AGG | 0.277115 | 1_4:+28761451 | None:intergenic |
| GTTAATTTGCTTTAGATTCT+CGG | 0.278278 | 1_4:-28760775 | Msa0158880:three_prime_UTR |
| CTATGGGTGGACAAGCTGTT+TGG | 0.288175 | 1_4:-28764056 | Msa0158880:CDS |
| TGAAAACAATTGATAAATCT+TGG | 0.301425 | 1_4:+28761312 | None:intergenic |
| GCACTCACTTCCTCGACATT+TGG | 0.310843 | 1_4:+28760923 | None:intergenic |
| ATGTCCCATGGCTTACATTC+TGG | 0.316887 | 1_4:-28761400 | Msa0158880:CDS |
| GCTCCCTTAAAAGTGCAAAT+TGG | 0.340576 | 1_4:-28760738 | Msa0158880:three_prime_UTR |
| CCTGGTGAACCACATGTTCT+TGG | 0.342532 | 1_4:+28764477 | None:intergenic |
| CCTACATCAAGTGTAGTAAA+AGG | 0.347381 | 1_4:-28761356 | Msa0158880:CDS |
| GCTTGCAGATAAGCTGGAAT+TGG | 0.347794 | 1_4:-28764106 | Msa0158880:CDS |
| TGGAACACCATGTTCTTTGT+AGG | 0.351078 | 1_4:+28764401 | None:intergenic |
| TTAGGGGTTGCTTGAAGAAT+TGG | 0.352823 | 1_4:-28764223 | Msa0158880:intron |
| CGTGACACGATAATTGGATT+TGG | 0.353441 | 1_4:-28761121 | Msa0158880:CDS |
| TGATCTTGATAACCCTTTCC+CGG | 0.358214 | 1_4:-28761077 | Msa0158880:CDS |
| GTCCAGCACCTTGCAATTCA+TGG | 0.359218 | 1_4:+28760954 | None:intergenic |
| GAAAACAATTGATAAATCTT+GGG | 0.362671 | 1_4:+28761313 | None:intergenic |
| ATACAATCAAAGTTCATCTA+TGG | 0.365095 | 1_4:-28761051 | Msa0158880:CDS |
| AATCCTCAAAACACAGTTGA+TGG | 0.370604 | 1_4:-28760897 | Msa0158880:CDS |
| CCATCTCTCAGCTTTATCCT+TGG | 0.381172 | 1_4:+28764435 | None:intergenic |
| ATTGTATTCATACATGGGTT+TGG | 0.388797 | 1_4:-28764357 | Msa0158880:CDS |
| TGAACTTTGATTGTATTATC+CGG | 0.394168 | 1_4:+28761058 | None:intergenic |
| GTCAATATCACAATTACGTT+GGG | 0.396519 | 1_4:-28764651 | Msa0158880:five_prime_UTR |
| ATATATCGTTGCAGCGTAGC+AGG | 0.408666 | 1_4:+28761004 | None:intergenic |
| TAGGGGTTGCTTGAAGAATT+GGG | 0.419223 | 1_4:-28764222 | Msa0158880:CDS |
| TTCTTGCTAGCTAATTGTCT+TGG | 0.429772 | 1_4:+28764381 | None:intergenic |
| TACCATGAATTGCAAGGTGC+TGG | 0.459267 | 1_4:-28760956 | Msa0158880:CDS |
| GCCTTAAATTTATTCCTCAC+AGG | 0.462087 | 1_4:-28764029 | Msa0158880:intron |
| GAACTTTGATTGTATTATCC+GGG | 0.468490 | 1_4:+28761059 | None:intergenic |
| GTCTGTTAACAAAGAACATC+AGG | 0.473018 | 1_4:-28761285 | Msa0158880:intron |
| CACAATTACGTTGGGAAAGA+CGG | 0.480454 | 1_4:-28764643 | Msa0158880:five_prime_UTR |
| TGAAGAGCTTGCAGATAAGC+TGG | 0.482941 | 1_4:-28764112 | Msa0158880:CDS |
| AAGAAGATTGTATTCATACA+TGG | 0.487358 | 1_4:-28764363 | Msa0158880:CDS |
| ATCCTTGGTGCTGTTATGGG+TGG | 0.489509 | 1_4:+28764450 | None:intergenic |
| TTGATTGTATTATCCGGGAA+AGG | 0.490232 | 1_4:+28761064 | None:intergenic |
| TGATTGTATTATCCGGGAAA+GGG | 0.497339 | 1_4:+28761065 | None:intergenic |
| CTTGCAGATAAGCTGGAATT+GGG | 0.497644 | 1_4:-28764105 | Msa0158880:CDS |
| GCTGTTATGGGTGGACCACC+TGG | 0.508255 | 1_4:+28764459 | None:intergenic |
| TCCCATGGCTTACATTCTGG+TGG | 0.512659 | 1_4:-28761397 | Msa0158880:CDS |
| GCTGAGAGATGGAAGACATA+TGG | 0.517259 | 1_4:-28764424 | Msa0158880:CDS |
| TGTCAATATCACAATTACGT+TGG | 0.521508 | 1_4:-28764652 | Msa0158880:five_prime_UTR |
| TCTTGGGGAGACAGAACAGC+AGG | 0.521518 | 1_4:+28761329 | None:intergenic |
| ATGGGTGGACAAGCTGTTTG+GGG | 0.523134 | 1_4:-28764054 | Msa0158880:CDS |
| GCAACCAACACAAGACCAAT+GGG | 0.531730 | 1_4:-28761441 | Msa0158880:CDS |
| AATTCATGGTATTGAATCCA+TGG | 0.536985 | 1_4:+28760968 | None:intergenic |
| TTTATGACAACAGACTTGCT+GGG | 0.539829 | 1_4:-28761541 | Msa0158880:intron |
| CCAAGAACATGTGGTTCACC+AGG | 0.544937 | 1_4:-28764477 | Msa0158880:CDS |
| GAGTTGCTCATTATGTCCCA+TGG | 0.548595 | 1_4:-28761412 | Msa0158880:CDS |
| TGCCACCAGTAGTTTACCAC+TGG | 0.548755 | 1_4:+28761503 | None:intergenic |
| TCATTTGATAGACCAGGGTA+TGG | 0.549328 | 1_4:-28764186 | Msa0158880:CDS |
| AGTGCCCATTGGTCTTGTGT+TGG | 0.555557 | 1_4:+28761437 | None:intergenic |
| AGAAGATTGTATTCATACAT+GGG | 0.557044 | 1_4:-28764362 | Msa0158880:CDS |
| AAAACAATTGATAAATCTTG+GGG | 0.558275 | 1_4:+28761314 | None:intergenic |
| GATAATTGGATTTGGAACTT+GGG | 0.561009 | 1_4:-28761113 | Msa0158880:CDS |
| TGGTGAACCACATGTTCTTG+GGG | 0.561443 | 1_4:+28764479 | None:intergenic |
| AATTAATTATTACCTTAGGA+AGG | 0.569133 | 1_4:+28764301 | None:intergenic |
| ATATATATTCACTTGAGTGT+TGG | 0.569473 | 1_4:-28764617 | Msa0158880:five_prime_UTR |
| GAGCAACTCGAAGTGCCCAT+TGG | 0.571357 | 1_4:+28761426 | None:intergenic |
| GATTGCAACAAACCTTCCTA+AGG | 0.579046 | 1_4:-28764313 | Msa0158880:intron |
| GTGGTAAACTACTGGTGGCA+TGG | 0.580926 | 1_4:-28761500 | Msa0158880:CDS |
| AGCAACCAACACAAGACCAA+TGG | 0.583136 | 1_4:-28761442 | Msa0158880:CDS |
| ATCAAAGTTCATCTATGGCA+AGG | 0.584167 | 1_4:-28761046 | Msa0158880:CDS |
| TGACTCCAGTGGTAAACTAC+TGG | 0.587202 | 1_4:-28761508 | Msa0158880:CDS |
| GTTGTGTCATTTGATAGACC+AGG | 0.594934 | 1_4:-28764192 | Msa0158880:CDS |
| AACCACCAGAATGTAAGCCA+TGG | 0.595126 | 1_4:+28761395 | None:intergenic |
| CCAAGGATAAAGCTGAGAGA+TGG | 0.598249 | 1_4:-28764435 | Msa0158880:CDS |
| CATATGGCCTACAAAGAACA+TGG | 0.598581 | 1_4:-28764408 | Msa0158880:CDS |
| TATATCGTTGCAGCGTAGCA+GGG | 0.601081 | 1_4:+28761005 | None:intergenic |
| TTGTGTCATTTGATAGACCA+GGG | 0.602205 | 1_4:-28764191 | Msa0158880:CDS |
| CTCCAGTGGTAAACTACTGG+TGG | 0.624685 | 1_4:-28761505 | Msa0158880:CDS |
| ACCACCAGAATGTAAGCCAT+GGG | 0.627278 | 1_4:+28761396 | None:intergenic |
| AAAGGGTTATCAAGATCAAG+TGG | 0.630034 | 1_4:+28761082 | None:intergenic |
| TTATGACAACAGACTTGCTG+GGG | 0.632491 | 1_4:-28761540 | Msa0158880:intron |
| ATTCAATACCATGAATTGCA+AGG | 0.635449 | 1_4:-28760962 | Msa0158880:CDS |
| ACACTTGTTTCCAAATGTCG+AGG | 0.640167 | 1_4:-28760933 | Msa0158880:CDS |
| GCATCACTTTCTCCATACCC+TGG | 0.644710 | 1_4:+28764174 | None:intergenic |
| CAGTCACAAGTGAAACAACA+AGG | 0.646584 | 1_4:-28761163 | Msa0158880:CDS |
| GGTGAACCACATGTTCTTGG+GGG | 0.653985 | 1_4:+28764480 | None:intergenic |
| CATTATCAGTGTTACCTGTG+AGG | 0.668451 | 1_4:+28764015 | None:intergenic |
| AGAACATGTGGTTCACCAGG+TGG | 0.673501 | 1_4:-28764474 | Msa0158880:CDS |
| GGCAACATTGATGACTCCAG+TGG | 0.685628 | 1_4:-28761519 | Msa0158880:CDS |
| CTTGGGGAGACAGAACAGCA+GGG | 0.724794 | 1_4:+28761330 | None:intergenic |
| GTCCACCCATAACAGCACCA+AGG | 0.749684 | 1_4:-28764452 | Msa0158880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTATTTTTAATT+TGG | - | chr1_4:28761171-28761190 | Msa0158880:intron | 0.0% |
| !! | TAAAAAAAATAAATTAATAA+TGG | - | chr1_4:28763852-28763871 | Msa0158880:intron | 0.0% |
| !!! | TATTTATTTTTAATTTGGTT+AGG | - | chr1_4:28761176-28761195 | Msa0158880:intron | 10.0% |
| !!! | ATTTATTTTTAATTTGGTTA+GGG | - | chr1_4:28761177-28761196 | Msa0158880:intron | 10.0% |
| !! | AAAAAAATATTAAAAATGTG+TGG | + | chr1_4:28761449-28761468 | None:intergenic | 10.0% |
| !!! | ACACATTTTTAATATTTTTT+TGG | - | chr1_4:28761448-28761467 | Msa0158880:CDS | 10.0% |
| !!! | TAAATATACAAATTTTTTTG+TGG | - | chr1_4:28761493-28761512 | Msa0158880:CDS | 10.0% |
| !! | TACATTGTAAAAAAAAAATA+TGG | + | chr1_4:28761616-28761635 | None:intergenic | 10.0% |
| !!! | CTTTAATTTTTTTTATTTGA+AGG | + | chr1_4:28762102-28762121 | None:intergenic | 10.0% |
| !! | ATAAATAAATTATATTGATG+TGG | + | chr1_4:28762160-28762179 | None:intergenic | 10.0% |
| !! | AAAATTACAAAAACTATTTA+AGG | + | chr1_4:28762228-28762247 | None:intergenic | 10.0% |
| !! | AAAAATACTAAAATTAACAA+CGG | + | chr1_4:28764574-28764593 | None:intergenic | 10.0% |
| !! | GTTCTTAATTAAAAATTTAA+AGG | - | chr1_4:28764616-28764635 | Msa0158880:five_prime_UTR | 10.0% |
| !! | CTAAATAATTATCAAACTTA+AGG | + | chr1_4:28761144-28761163 | None:intergenic | 15.0% |
| !!! | TTTATTTTTAATTTGGTTAG+GGG | - | chr1_4:28761178-28761197 | Msa0158880:intron | 15.0% |
| !!! | TGGTAATTGAAAATTTTATA+GGG | - | chr1_4:28761513-28761532 | Msa0158880:CDS | 15.0% |
| !! | ATAAAACTCAAATTGAATAA+TGG | - | chr1_4:28761940-28761959 | Msa0158880:intron | 15.0% |
| !!! | AATTGATTTAAATTCAATAC+TGG | + | chr1_4:28762037-28762056 | None:intergenic | 15.0% |
| !!! | ATATGTGTTTTATTTTTACA+TGG | - | chr1_4:28762464-28762483 | Msa0158880:intron | 15.0% |
| !!! | TATGTGTTTTATTTTTACAT+GGG | - | chr1_4:28762465-28762484 | Msa0158880:intron | 15.0% |
| !!! | TTAGTATTTTTCTTTTTGTA+AGG | - | chr1_4:28764583-28764602 | Msa0158880:five_prime_UTR | 15.0% |
| !!! | TAGTATTTTTCTTTTTGTAA+GGG | - | chr1_4:28764584-28764603 | Msa0158880:five_prime_UTR | 15.0% |
| !!! | AATTTTGTTGATTGGAATTT+TGG | - | chr1_4:28760885-28760904 | Msa0158880:exon | 20.0% |
| !!! | ATTTTGTTGATTGGAATTTT+GGG | - | chr1_4:28760886-28760905 | Msa0158880:CDS | 20.0% |
| !! | AATTAATTATTACCTTAGGA+AGG | + | chr1_4:28761119-28761138 | None:intergenic | 20.0% |
| !!! | GTGGTAATTGAAAATTTTAT+AGG | - | chr1_4:28761512-28761531 | Msa0158880:CDS | 20.0% |
| !!! | AAACTTTTACAATGGAATAT+AGG | + | chr1_4:28761801-28761820 | None:intergenic | 20.0% |
| !!! | GTTTTATGAAACTTTTACAA+TGG | + | chr1_4:28761809-28761828 | None:intergenic | 20.0% |
| !!! | AACAATAGAAATCTTAGTTT+TGG | + | chr1_4:28761831-28761850 | None:intergenic | 20.0% |
| !!! | TGTAAATCATAGTTGTTTTT+TGG | + | chr1_4:28761891-28761910 | None:intergenic | 20.0% |
| !! | AAATTATATTGATGTGGAAA+TGG | + | chr1_4:28762154-28762173 | None:intergenic | 20.0% |
| !! | ACTATCGTGTTAAAAATATT+TGG | + | chr1_4:28762332-28762351 | None:intergenic | 20.0% |
| !!! | AAATATTTTTAACACGATAG+TGG | - | chr1_4:28762331-28762350 | Msa0158880:intron | 20.0% |
| !!! | TCTTGGTGTTAAAAAATATT+CGG | + | chr1_4:28762407-28762426 | None:intergenic | 20.0% |
| !!! | TTTTTCATATTTTAACCTCT+TGG | + | chr1_4:28762424-28762443 | None:intergenic | 20.0% |
| !! | AATCTTAAAAGAGAAATGTT+TGG | - | chr1_4:28762577-28762596 | Msa0158880:intron | 20.0% |
| !! | AAAACAATTGATAAATCTTG+GGG | + | chr1_4:28764106-28764125 | None:intergenic | 20.0% |
| !! | GAAAACAATTGATAAATCTT+GGG | + | chr1_4:28764107-28764126 | None:intergenic | 20.0% |
| !! | TGAAAACAATTGATAAATCT+TGG | + | chr1_4:28764108-28764127 | None:intergenic | 20.0% |
| ! | ATATATATTCACTTGAGTGT+TGG | - | chr1_4:28760800-28760819 | Msa0158880:three_prime_UTR | 25.0% |
| !! | ATTGCATCAATTTTGTTGAT+TGG | - | chr1_4:28760877-28760896 | Msa0158880:exon | 25.0% |
| ! | AAGAAGATTGTATTCATACA+TGG | - | chr1_4:28761054-28761073 | Msa0158880:CDS | 25.0% |
| ! | AGAAGATTGTATTCATACAT+GGG | - | chr1_4:28761055-28761074 | Msa0158880:CDS | 25.0% |
| ! | GGTGAATTAATTATTACCTT+AGG | + | chr1_4:28761123-28761142 | None:intergenic | 25.0% |
| !! | AAACTCTTTACACTTCTTTT+TGG | + | chr1_4:28761273-28761292 | None:intergenic | 25.0% |
| !! | AAAAAGAAGTGTAAAGAGTT+TGG | - | chr1_4:28761272-28761291 | Msa0158880:intron | 25.0% |
| ! | ATATTAAAAATGTGTGGTCT+AGG | + | chr1_4:28761443-28761462 | None:intergenic | 25.0% |
| ! | CTAATACTTGTGAAAATAGA+TGG | - | chr1_4:28761971-28761990 | Msa0158880:intron | 25.0% |
| !!! | GATGTTTTAACATTTTACCA+AGG | - | chr1_4:28762363-28762382 | Msa0158880:intron | 25.0% |
| !!! | CTTGGTGTTAAAAAATATTC+GGG | + | chr1_4:28762406-28762425 | None:intergenic | 25.0% |
| !!! | GAATATTTTTTAACACCAAG+AGG | - | chr1_4:28762406-28762425 | Msa0158880:intron | 25.0% |
| ! | CATTTATACCATTGTTCAAT+TGG | + | chr1_4:28762540-28762559 | None:intergenic | 25.0% |
| ! | AACACATAAGTGGTATAAAA+AGG | - | chr1_4:28762735-28762754 | Msa0158880:intron | 25.0% |
| ! | ATAAAGTGTGAAATGAATGT+AGG | - | chr1_4:28763736-28763755 | Msa0158880:intron | 25.0% |
| ! | TGAACTTTGATTGTATTATC+CGG | + | chr1_4:28764362-28764381 | None:intergenic | 25.0% |
| ! | ATACAATCAAAGTTCATCTA+TGG | - | chr1_4:28764366-28764385 | Msa0158880:CDS | 25.0% |
| ! | ATATTGTTGAAAAACTTCCA+TGG | - | chr1_4:28764432-28764451 | Msa0158880:CDS | 25.0% |
| !! | TTTTTCTTTTTGTAAGGGAT+TGG | - | chr1_4:28764589-28764608 | Msa0158880:five_prime_UTR | 25.0% |
| !!! | GTTAATTTGCTTTAGATTCT+CGG | - | chr1_4:28764642-28764661 | Msa0158880:five_prime_UTR | 25.0% |
| TGTCAATATCACAATTACGT+TGG | - | chr1_4:28760765-28760784 | Msa0158880:three_prime_UTR | 30.0% | |
| GTCAATATCACAATTACGTT+GGG | - | chr1_4:28760766-28760785 | Msa0158880:three_prime_UTR | 30.0% | |
| ATTGTATTCATACATGGGTT+TGG | - | chr1_4:28761060-28761079 | Msa0158880:CDS | 30.0% | |
| !! | GGATCTAAGTTTTATGTCAT+GGG | - | chr1_4:28761333-28761352 | Msa0158880:CDS | 30.0% |
| ! | TTATGTCATGGGATTTTCTA+TGG | - | chr1_4:28761344-28761363 | Msa0158880:CDS | 30.0% |
| ! | TATGTCATGGGATTTTCTAT+GGG | - | chr1_4:28761345-28761364 | Msa0158880:CDS | 30.0% |
| ACCTGTGAGGAATAAATTTA+AGG | + | chr1_4:28761392-28761411 | None:intergenic | 30.0% | |
| !!! | TAGTTGTTTTTTGGTTGAGT+GGG | + | chr1_4:28761882-28761901 | None:intergenic | 30.0% |
| !!! | ATAGTTGTTTTTTGGTTGAG+TGG | + | chr1_4:28761883-28761902 | None:intergenic | 30.0% |
| ! | AGATGGCTAAAATCTTGTTT+CGG | - | chr1_4:28761988-28762007 | Msa0158880:intron | 30.0% |
| TGTAGTTTGAAAATAGTCCT+TGG | + | chr1_4:28762383-28762402 | None:intergenic | 30.0% | |
| ! | AATAACCTCTGTACTTTTGA+AGG | + | chr1_4:28762495-28762514 | None:intergenic | 30.0% |
| ! | TTGTTCAATTGGTTCAACTA+AGG | + | chr1_4:28762529-28762548 | None:intergenic | 30.0% |
| TAGTTGAACCAATTGAACAA+TGG | - | chr1_4:28762529-28762548 | Msa0158880:intron | 30.0% | |
| ACAACAAATCAACACATAAG+TGG | - | chr1_4:28762725-28762744 | Msa0158880:intron | 30.0% | |
| !!! | CTCTACGTTTTTTTGCAATT+CGG | + | chr1_4:28762821-28762840 | None:intergenic | 30.0% |
| !! | TGTTTGTTCCTTTTGTTTAC+AGG | + | chr1_4:28763205-28763224 | None:intergenic | 30.0% |
| !!! | GACTGTTTTTATATTCATCC+AGG | + | chr1_4:28763663-28763682 | None:intergenic | 30.0% |
| GAATATAAAAACAGTCACCA+TGG | - | chr1_4:28763667-28763686 | Msa0158880:intron | 30.0% | |
| ! | GATAATTGGATTTGGAACTT+GGG | - | chr1_4:28764304-28764323 | Msa0158880:intron | 30.0% |
| GAACTTTGATTGTATTATCC+GGG | + | chr1_4:28764361-28764380 | None:intergenic | 30.0% | |
| ! | AATTCATGGTATTGAATCCA+TGG | + | chr1_4:28764452-28764471 | None:intergenic | 30.0% |
| ATTCAATACCATGAATTGCA+AGG | - | chr1_4:28764455-28764474 | Msa0158880:CDS | 30.0% | |
| ! | CTTCCAATTTGCACTTTTAA+GGG | + | chr1_4:28764685-28764704 | None:intergenic | 30.0% |
| ! | ACTTCCAATTTGCACTTTTA+AGG | + | chr1_4:28764686-28764705 | None:intergenic | 30.0% |
| !! | GGCACTAACATAATTTTGAC+TGG | - | chr1_4:28760821-28760840 | Msa0158880:intron | 35.0% |
| ! | TTGACTGGTTCTTTGTTTCT+AGG | - | chr1_4:28760836-28760855 | Msa0158880:intron | 35.0% |
| !! | TTTATCCTTGGTGCTGTTAT+GGG | + | chr1_4:28760973-28760992 | None:intergenic | 35.0% |
| TTCTTGCTAGCTAATTGTCT+TGG | + | chr1_4:28761039-28761058 | None:intergenic | 35.0% | |
| !! | TTGTGTCATTTGATAGACCA+GGG | - | chr1_4:28761226-28761245 | Msa0158880:intron | 35.0% |
| !! | GGGATCTAAGTTTTATGTCA+TGG | - | chr1_4:28761332-28761351 | Msa0158880:CDS | 35.0% |
| GCCTTAAATTTATTCCTCAC+AGG | - | chr1_4:28761388-28761407 | Msa0158880:CDS | 35.0% | |
| ! | AAAAATGTGTGGTCTAGGAT+AGG | + | chr1_4:28761438-28761457 | None:intergenic | 35.0% |
| TTCGGTTCCTCCAAAAAAAA+AGG | - | chr1_4:28762006-28762025 | Msa0158880:intron | 35.0% | |
| GTTCCTCCAAAAAAAAAGGT+GGG | - | chr1_4:28762010-28762029 | Msa0158880:intron | 35.0% | |
| TTCCTCCAAAAAAAAAGGTG+GGG | - | chr1_4:28762011-28762030 | Msa0158880:intron | 35.0% | |
| AACAATGGTATAAATGCTCG+TGG | - | chr1_4:28762544-28762563 | Msa0158880:intron | 35.0% | |
| ! | AGATCAGAAAGTACAAGACT+GGG | - | chr1_4:28762654-28762673 | Msa0158880:intron | 35.0% |
| ACTCTAAACAATCACTACCA+CGG | - | chr1_4:28762763-28762782 | Msa0158880:intron | 35.0% | |
| ! | GAGGATTTAGAGCTTCTAAA+CGG | - | chr1_4:28762842-28762861 | Msa0158880:intron | 35.0% |
| ATGGTTCATAAATCTCGAAC+CGG | + | chr1_4:28763146-28763165 | None:intergenic | 35.0% | |
| !! | GTTTGATTTGATCTGGTTGA+TGG | + | chr1_4:28763165-28763184 | None:intergenic | 35.0% |
| TTGTTTACAGGAAGTGAAGA+TGG | + | chr1_4:28763193-28763212 | None:intergenic | 35.0% | |
| CTTCACTTCCTGTAAACAAA+AGG | - | chr1_4:28763194-28763213 | Msa0158880:intron | 35.0% | |
| AAAGGGTTCAGACAAAGAAA+GGG | - | chr1_4:28763485-28763504 | Msa0158880:intron | 35.0% | |
| GGAGAAGATAAGTCTGTTAA+GGG | - | chr1_4:28763592-28763611 | Msa0158880:intron | 35.0% | |
| ! | TTTTATGACAACAGACTTGC+TGG | - | chr1_4:28763875-28763894 | Msa0158880:intron | 35.0% |
| ! | TTTATGACAACAGACTTGCT+GGG | - | chr1_4:28763876-28763895 | Msa0158880:intron | 35.0% |
| ! | TTGCTCATAATAGGCTTTTG+TGG | + | chr1_4:28763960-28763979 | None:intergenic | 35.0% |
| !! | TTGTGTTGGTTGCTCATAAT+AGG | + | chr1_4:28763969-28763988 | None:intergenic | 35.0% |
| TCTGGTGGTTTACTCAAAAT+TGG | - | chr1_4:28764035-28764054 | Msa0158880:CDS | 35.0% | |
| ! | CCTTTTACTACACTTGATGT+AGG | + | chr1_4:28764064-28764083 | None:intergenic | 35.0% |
| CCTACATCAAGTGTAGTAAA+AGG | - | chr1_4:28764061-28764080 | Msa0158880:CDS | 35.0% | |
| GTCTGTTAACAAAGAACATC+AGG | - | chr1_4:28764132-28764151 | Msa0158880:CDS | 35.0% | |
| ATATGTCGTGACACGATAAT+TGG | - | chr1_4:28764290-28764309 | Msa0158880:intron | 35.0% | |
| ! | CGATAATTGGATTTGGAACT+TGG | - | chr1_4:28764303-28764322 | Msa0158880:intron | 35.0% |
| AAAGGGTTATCAAGATCAAG+TGG | + | chr1_4:28764338-28764357 | None:intergenic | 35.0% | |
| TGATTGTATTATCCGGGAAA+GGG | + | chr1_4:28764355-28764374 | None:intergenic | 35.0% | |
| TTGATTGTATTATCCGGGAA+AGG | + | chr1_4:28764356-28764375 | None:intergenic | 35.0% | |
| ATCAAAGTTCATCTATGGCA+AGG | - | chr1_4:28764371-28764390 | Msa0158880:CDS | 35.0% | |
| AATCCTCAAAACACAGTTGA+TGG | - | chr1_4:28764520-28764539 | Msa0158880:CDS | 35.0% | |
| ! | TATCCATCAACTGTGTTTTG+AGG | + | chr1_4:28764526-28764545 | None:intergenic | 35.0% |
| CACAATTACGTTGGGAAAGA+CGG | - | chr1_4:28760774-28760793 | Msa0158880:three_prime_UTR | 40.0% | |
| !! | CTTTATCCTTGGTGCTGTTA+TGG | + | chr1_4:28760974-28760993 | None:intergenic | 40.0% |
| CATATGGCCTACAAAGAACA+TGG | - | chr1_4:28761009-28761028 | Msa0158880:CDS | 40.0% | |
| TGGAACACCATGTTCTTTGT+AGG | + | chr1_4:28761019-28761038 | None:intergenic | 40.0% | |
| GATTGCAACAAACCTTCCTA+AGG | - | chr1_4:28761104-28761123 | Msa0158880:CDS | 40.0% | |
| TTAGGGGTTGCTTGAAGAAT+TGG | - | chr1_4:28761194-28761213 | Msa0158880:intron | 40.0% | |
| TAGGGGTTGCTTGAAGAATT+GGG | - | chr1_4:28761195-28761214 | Msa0158880:intron | 40.0% | |
| !! | GTTGTGTCATTTGATAGACC+AGG | - | chr1_4:28761225-28761244 | Msa0158880:intron | 40.0% |
| TCATTTGATAGACCAGGGTA+TGG | - | chr1_4:28761231-28761250 | Msa0158880:intron | 40.0% | |
| CTTGCAGATAAGCTGGAATT+GGG | - | chr1_4:28761312-28761331 | Msa0158880:CDS | 40.0% | |
| CATTATCAGTGTTACCTGTG+AGG | + | chr1_4:28761405-28761424 | None:intergenic | 40.0% | |
| GGTAAACGATGATCAAGGTT+AGG | + | chr1_4:28761857-28761876 | None:intergenic | 40.0% | |
| !!! | TGTTTTTTGGTTGAGTGGGT+GGG | + | chr1_4:28761878-28761897 | None:intergenic | 40.0% |
| !!! | TTGTTTTTTGGTTGAGTGGG+TGG | + | chr1_4:28761879-28761898 | None:intergenic | 40.0% |
| GGTTCCTCCAAAAAAAAAGG+TGG | - | chr1_4:28762009-28762028 | Msa0158880:intron | 40.0% | |
| ! | GTTGTCCTTCAAAAGTACAG+AGG | - | chr1_4:28762487-28762506 | Msa0158880:intron | 40.0% |
| ! | GAGATCAGAAAGTACAAGAC+TGG | - | chr1_4:28762653-28762672 | Msa0158880:intron | 40.0% |
| ! | GATCAGAAAGTACAAGACTG+GGG | - | chr1_4:28762655-28762674 | Msa0158880:intron | 40.0% |
| ! | ATCAGAAAGTACAAGACTGG+GGG | - | chr1_4:28762656-28762675 | Msa0158880:intron | 40.0% |
| ! | GTTTTTGTGGTATACTGGTC+AGG | + | chr1_4:28762689-28762708 | None:intergenic | 40.0% |
| !!! | GGGTTGTTTTTGTGGTATAC+TGG | + | chr1_4:28762694-28762713 | None:intergenic | 40.0% |
| ACCACAAAAACAACCCGTTA+CGG | - | chr1_4:28762698-28762717 | Msa0158880:intron | 40.0% | |
| !! | ATTTGTTGTATGCCCGTAAC+GGG | + | chr1_4:28762714-28762733 | None:intergenic | 40.0% |
| !! | GATTTGTTGTATGCCCGTAA+CGG | + | chr1_4:28762715-28762734 | None:intergenic | 40.0% |
| TTGCAAAAAAACGTAGAGCG+AGG | - | chr1_4:28762823-28762842 | Msa0158880:intron | 40.0% | |
| !! | TTAGCTTGCTTCGTTCAGAA+GGG | + | chr1_4:28762915-28762934 | None:intergenic | 40.0% |
| !! | TTTAGCTTGCTTCGTTCAGA+AGG | + | chr1_4:28762916-28762935 | None:intergenic | 40.0% |
| AAGCAAGCTAAAAGCCCTTT+CGG | - | chr1_4:28762924-28762943 | Msa0158880:intron | 40.0% | |
| ! | CTTCGGTTCGTAAAAATGGT+TGG | + | chr1_4:28762956-28762975 | None:intergenic | 40.0% |
| CTTCAGGATATTATCTACCG+CGG | + | chr1_4:28763022-28763041 | None:intergenic | 40.0% | |
| !! | TTGTTGTTTATCGCACCTTC+AGG | + | chr1_4:28763038-28763057 | None:intergenic | 40.0% |
| AACAACAACTACCGTCAACA+CGG | - | chr1_4:28763050-28763069 | Msa0158880:intron | 40.0% | |
| CTGATATACTCGAAAGGGTT+AGG | + | chr1_4:28763088-28763107 | None:intergenic | 40.0% | |
| ! | CTAACCCTTTCGAGTATATC+AGG | - | chr1_4:28763086-28763105 | Msa0158880:intron | 40.0% |
| !! | GGTTTTTCCTGGTTTGAGAT+GGG | + | chr1_4:28763124-28763143 | None:intergenic | 40.0% |
| ATCTCAAACCAGGAAAAACC+CGG | - | chr1_4:28763124-28763143 | Msa0158880:intron | 40.0% | |
| TGGTTCATAAATCTCGAACC+GGG | + | chr1_4:28763145-28763164 | None:intergenic | 40.0% | |
| TTTACAGGAAGTGAAGATGG+CGG | + | chr1_4:28763190-28763209 | None:intergenic | 40.0% | |
| ! | TGGTTTTCTGTTCTTTCCGT+TGG | + | chr1_4:28763291-28763310 | None:intergenic | 40.0% |
| TCAAACCACTACCTTGAGAA+CGG | - | chr1_4:28763415-28763434 | Msa0158880:intron | 40.0% | |
| ACGACGAAAACCAAGGAAAA+GGG | - | chr1_4:28763447-28763466 | Msa0158880:intron | 40.0% | |
| ! | TCTGTTTTCACCCTTTTCCT+TGG | + | chr1_4:28763460-28763479 | None:intergenic | 40.0% |
| GAAAAGGGTGAAAACAGAGA+TGG | - | chr1_4:28763462-28763481 | Msa0158880:intron | 40.0% | |
| GGTGAAAACAGAGATGGAAA+GGG | - | chr1_4:28763468-28763487 | Msa0158880:intron | 40.0% | |
| GAAAGGGTTCAGACAAAGAA+AGG | - | chr1_4:28763484-28763503 | Msa0158880:intron | 40.0% | |
| AAGGGTTCAGACAAAGAAAG+GGG | - | chr1_4:28763486-28763505 | Msa0158880:intron | 40.0% | |
| ! | ATGTAGACTGTTTTGTACGG+TGG | + | chr1_4:28763546-28763565 | None:intergenic | 40.0% |
| ! | CCGATGTAGACTGTTTTGTA+CGG | + | chr1_4:28763549-28763568 | None:intergenic | 40.0% |
| CCGTACAAAACAGTCTACAT+CGG | - | chr1_4:28763546-28763565 | Msa0158880:intron | 40.0% | |
| ! | AGAGAACAGCCTTGGATTTT+GGG | - | chr1_4:28763569-28763588 | Msa0158880:intron | 40.0% |
| GGGAGAAGATAAGTCTGTTA+AGG | - | chr1_4:28763591-28763610 | Msa0158880:intron | 40.0% | |
| ACTCGTATTAGTGTACACCA+TGG | + | chr1_4:28763687-28763706 | None:intergenic | 40.0% | |
| !! | TTATGACAACAGACTTGCTG+GGG | - | chr1_4:28763877-28763896 | Msa0158880:intron | 40.0% |
| ! | GCTTTTGTGGACATGTTGTA+AGG | + | chr1_4:28763947-28763966 | None:intergenic | 40.0% |
| CAGTCACAAGTGAAACAACA+AGG | - | chr1_4:28764254-28764273 | Msa0158880:intron | 40.0% | |
| CGTGACACGATAATTGGATT+TGG | - | chr1_4:28764296-28764315 | Msa0158880:intron | 40.0% | |
| ! | TGATCTTGATAACCCTTTCC+CGG | - | chr1_4:28764340-28764359 | Msa0158880:CDS | 40.0% |
| ACACTTGTTTCCAAATGTCG+AGG | - | chr1_4:28764484-28764503 | Msa0158880:CDS | 40.0% | |
| ! | GCTCCCTTAAAAGTGCAAAT+TGG | - | chr1_4:28764679-28764698 | Msa0158880:five_prime_UTR | 40.0% |
| TGGTGAACCACATGTTCTTG+GGG | + | chr1_4:28760941-28760960 | None:intergenic | 45.0% | |
| CTGGTGAACCACATGTTCTT+GGG | + | chr1_4:28760942-28760961 | None:intergenic | 45.0% | |
| ! | CCATCTCTCAGCTTTATCCT+TGG | + | chr1_4:28760985-28761004 | None:intergenic | 45.0% |
| CCAAGGATAAAGCTGAGAGA+TGG | - | chr1_4:28760982-28761001 | Msa0158880:CDS | 45.0% | |
| GCTGAGAGATGGAAGACATA+TGG | - | chr1_4:28760993-28761012 | Msa0158880:CDS | 45.0% | |
| TGAAGAGCTTGCAGATAAGC+TGG | - | chr1_4:28761305-28761324 | Msa0158880:CDS | 45.0% | |
| GCTTGCAGATAAGCTGGAAT+TGG | - | chr1_4:28761311-28761330 | Msa0158880:CDS | 45.0% | |
| ! | GTCATGGGATTTTCTATGGG+TGG | - | chr1_4:28761348-28761367 | Msa0158880:CDS | 45.0% |
| TATGGGTGGACAAGCTGTTT+GGG | - | chr1_4:28761362-28761381 | Msa0158880:CDS | 45.0% | |
| ! | GTGGTCTAGGATAGGATAGA+AGG | + | chr1_4:28761430-28761449 | None:intergenic | 45.0% |
| !!! | ACTGGCCCCACCTTTTTTTT+TGG | + | chr1_4:28762019-28762038 | None:intergenic | 45.0% |
| ! | TCAGAAAGTACAAGACTGGG+GGG | - | chr1_4:28762657-28762676 | Msa0158880:intron | 45.0% |
| CCACAAAAACAACCCGTTAC+GGG | - | chr1_4:28762699-28762718 | Msa0158880:intron | 45.0% | |
| TAGAGCTTCTAAACGGCGTA+TGG | - | chr1_4:28762849-28762868 | Msa0158880:intron | 45.0% | |
| GAAGGGAGTTGTTGGATCTT+GGG | + | chr1_4:28762898-28762917 | None:intergenic | 45.0% | |
| AGAAGGGAGTTGTTGGATCT+TGG | + | chr1_4:28762899-28762918 | None:intergenic | 45.0% | |
| TTCGTTCAGAAGGGAGTTGT+TGG | + | chr1_4:28762906-28762925 | None:intergenic | 45.0% | |
| AGCAAGCTAAAAGCCCTTTC+GGG | - | chr1_4:28762925-28762944 | Msa0158880:intron | 45.0% | |
| !! | ATGGTTGGTTTAGCCCGAAA+GGG | + | chr1_4:28762941-28762960 | None:intergenic | 45.0% |
| !! | AATGGTTGGTTTAGCCCGAA+AGG | + | chr1_4:28762942-28762961 | None:intergenic | 45.0% |
| ! | CGTGCTTCGGTTCGTAAAAA+TGG | + | chr1_4:28762960-28762979 | None:intergenic | 45.0% |
| AACAAGACCTATGCGTGCTT+CGG | + | chr1_4:28762973-28762992 | None:intergenic | 45.0% | |
| CGCGGTAGATAATATCCTGA+AGG | - | chr1_4:28763020-28763039 | Msa0158880:intron | 45.0% | |
| CGGTCCTGATATACTCGAAA+GGG | + | chr1_4:28763093-28763112 | None:intergenic | 45.0% | |
| TCGGTCCTGATATACTCGAA+AGG | + | chr1_4:28763094-28763113 | None:intergenic | 45.0% | |
| ! | GTTTGAGATGGGTTCTGGTT+CGG | + | chr1_4:28763113-28763132 | None:intergenic | 45.0% |
| !! | GGGTTTTTCCTGGTTTGAGA+TGG | + | chr1_4:28763125-28763144 | None:intergenic | 45.0% |
| GGAAAGAACAGAAAACCAGC+TGG | - | chr1_4:28763293-28763312 | Msa0158880:intron | 45.0% | |
| TCTCTGCTTGTTCGAGGATT+TGG | + | chr1_4:28763320-28763339 | None:intergenic | 45.0% | |
| ! | CGTCGGTCTTTTCTTTGGAT+GGG | + | chr1_4:28763343-28763362 | None:intergenic | 45.0% |
| CTGAAACCACGAACCAAAAC+CGG | - | chr1_4:28763391-28763410 | Msa0158880:intron | 45.0% | |
| !!! | TTTGATCCGGTTTTGGTTCG+TGG | + | chr1_4:28763400-28763419 | None:intergenic | 45.0% |
| ! | GTAGTGGTTTGATCCGGTTT+TGG | + | chr1_4:28763407-28763426 | None:intergenic | 45.0% |
| ! | CTCAAGGTAGTGGTTTGATC+CGG | + | chr1_4:28763413-28763432 | None:intergenic | 45.0% |
| GACGACGAAAACCAAGGAAA+AGG | - | chr1_4:28763446-28763465 | Msa0158880:intron | 45.0% | |
| GGGTGAAAACAGAGATGGAA+AGG | - | chr1_4:28763467-28763486 | Msa0158880:intron | 45.0% | |
| AGACAAAGAAAGGGGAGGAT+CGG | - | chr1_4:28763494-28763513 | Msa0158880:intron | 45.0% | |
| ! | GAGAGAACAGCCTTGGATTT+TGG | - | chr1_4:28763568-28763587 | Msa0158880:intron | 45.0% |
| ! | GAGAACAGCCTTGGATTTTG+GGG | - | chr1_4:28763570-28763589 | Msa0158880:intron | 45.0% |
| ! | AGAACAGCCTTGGATTTTGG+GGG | - | chr1_4:28763571-28763590 | Msa0158880:intron | 45.0% |
| ATCTTCTCCCCCAAAATCCA+AGG | + | chr1_4:28763581-28763600 | None:intergenic | 45.0% | |
| TGACTCCAGTGGTAAACTAC+TGG | - | chr1_4:28763909-28763928 | Msa0158880:intron | 45.0% | |
| AGCAACCAACACAAGACCAA+TGG | - | chr1_4:28763975-28763994 | Msa0158880:intron | 45.0% | |
| GCAACCAACACAAGACCAAT+GGG | - | chr1_4:28763976-28763995 | Msa0158880:intron | 45.0% | |
| GAGTTGCTCATTATGTCCCA+TGG | - | chr1_4:28764005-28764024 | Msa0158880:intron | 45.0% | |
| ATGTCCCATGGCTTACATTC+TGG | - | chr1_4:28764017-28764036 | Msa0158880:intron | 45.0% | |
| ACCACCAGAATGTAAGCCAT+GGG | + | chr1_4:28764024-28764043 | None:intergenic | 45.0% | |
| AACCACCAGAATGTAAGCCA+TGG | + | chr1_4:28764025-28764044 | None:intergenic | 45.0% | |
| TATATCGTTGCAGCGTAGCA+GGG | + | chr1_4:28764415-28764434 | None:intergenic | 45.0% | |
| ATATATCGTTGCAGCGTAGC+AGG | + | chr1_4:28764416-28764435 | None:intergenic | 45.0% | |
| TACCATGAATTGCAAGGTGC+TGG | - | chr1_4:28764461-28764480 | Msa0158880:CDS | 45.0% | |
| !! | TGAAAAATAAAAAATTATAA+AGG | - | chr1_4:28762437-28762456 | Msa0158880:intron | 5.0% |
| !!! | TTTTTATTTTATTTATCTTT+TGG | + | chr1_4:28762631-28762650 | None:intergenic | 5.0% |
| TCTTGGGGGTGGAGGTTTAA+TGG | + | chr1_4:28760926-28760945 | None:intergenic | 50.0% | |
| GGTGAACCACATGTTCTTGG+GGG | + | chr1_4:28760940-28760959 | None:intergenic | 50.0% | |
| CCTGGTGAACCACATGTTCT+TGG | + | chr1_4:28760943-28760962 | None:intergenic | 50.0% | |
| CCAAGAACATGTGGTTCACC+AGG | - | chr1_4:28760940-28760959 | Msa0158880:CDS | 50.0% | |
| AGAACATGTGGTTCACCAGG+TGG | - | chr1_4:28760943-28760962 | Msa0158880:CDS | 50.0% | |
| !! | ATCCTTGGTGCTGTTATGGG+TGG | + | chr1_4:28760970-28760989 | None:intergenic | 50.0% |
| GCATCACTTTCTCCATACCC+TGG | + | chr1_4:28761246-28761265 | None:intergenic | 50.0% | |
| CTATGGGTGGACAAGCTGTT+TGG | - | chr1_4:28761361-28761380 | Msa0158880:CDS | 50.0% | |
| ATGGGTGGACAAGCTGTTTG+GGG | - | chr1_4:28761363-28761382 | Msa0158880:CDS | 50.0% | |
| GGGTGGGTAAACGATGATCA+AGG | + | chr1_4:28761862-28761881 | None:intergenic | 50.0% | |
| !!! | GGCCCCACCTTTTTTTTTGG+AGG | + | chr1_4:28762016-28762035 | None:intergenic | 50.0% |
| !!! | CCCGTAACGGGTTGTTTTTG+TGG | + | chr1_4:28762702-28762721 | None:intergenic | 50.0% |
| TTACGAACCGAAGCACGCAT+AGG | - | chr1_4:28762963-28762982 | Msa0158880:intron | 50.0% | |
| CACCAACGATTCAACAACCG+CGG | - | chr1_4:28763002-28763021 | Msa0158880:intron | 50.0% | |
| TACCGCGGTTGTTGAATCGT+TGG | + | chr1_4:28763007-28763026 | None:intergenic | 50.0% | |
| ACCAGAACCCATCTCAAACC+AGG | - | chr1_4:28763114-28763133 | Msa0158880:intron | 50.0% | |
| ! | TCCTGGTTTGAGATGGGTTC+TGG | + | chr1_4:28763118-28763137 | None:intergenic | 50.0% |
| ! | ATCTCGAACCGGGTTTTTCC+TGG | + | chr1_4:28763135-28763154 | None:intergenic | 50.0% |
| !! | GGCGGTGGTTTGATTTGATC+TGG | + | chr1_4:28763172-28763191 | None:intergenic | 50.0% |
| !! | GCGTCGGTCTTTTCTTTGGA+TGG | + | chr1_4:28763344-28763363 | None:intergenic | 50.0% |
| TCCAAAGAAAAGACCGACGC+CGG | - | chr1_4:28763344-28763363 | Msa0158880:intron | 50.0% | |
| AACCACTACCTTGAGAACGG+CGG | - | chr1_4:28763418-28763437 | Msa0158880:intron | 50.0% | |
| GGTTCAGACAAAGAAAGGGG+AGG | - | chr1_4:28763489-28763508 | Msa0158880:intron | 50.0% | |
| TACATCGGAGAGAACAGCCT+TGG | - | chr1_4:28763561-28763580 | Msa0158880:intron | 50.0% | |
| ! | CTAGAGAGAGAAGTGTAGCC+TGG | - | chr1_4:28763642-28763661 | Msa0158880:intron | 50.0% |
| ! | GGCAACATTGATGACTCCAG+TGG | - | chr1_4:28763898-28763917 | Msa0158880:intron | 50.0% |
| CTCCAGTGGTAAACTACTGG+TGG | - | chr1_4:28763912-28763931 | Msa0158880:intron | 50.0% | |
| TGCCACCAGTAGTTTACCAC+TGG | + | chr1_4:28763917-28763936 | None:intergenic | 50.0% | |
| GTGGTAAACTACTGGTGGCA+TGG | - | chr1_4:28763917-28763936 | Msa0158880:intron | 50.0% | |
| !! | AGTGCCCATTGGTCTTGTGT+TGG | + | chr1_4:28763983-28764002 | None:intergenic | 50.0% |
| TCCCATGGCTTACATTCTGG+TGG | - | chr1_4:28764020-28764039 | Msa0158880:intron | 50.0% | |
| GTCCAGCACCTTGCAATTCA+TGG | + | chr1_4:28764466-28764485 | None:intergenic | 50.0% | |
| GCACTCACTTCCTCGACATT+TGG | + | chr1_4:28764497-28764516 | None:intergenic | 50.0% | |
| GAACCACATGTTCTTGGGGG+TGG | + | chr1_4:28760937-28760956 | None:intergenic | 55.0% | |
| GTCCACCCATAACAGCACCA+AGG | - | chr1_4:28760965-28760984 | Msa0158880:CDS | 55.0% | |
| TCGGTTTCGTTCCCACACGT+GGG | + | chr1_4:28762802-28762821 | None:intergenic | 55.0% | |
| TTCGGTTTCGTTCCCACACG+TGG | + | chr1_4:28762803-28762822 | None:intergenic | 55.0% | |
| CGCGGTTGTTGAATCGTTGG+TGG | + | chr1_4:28763004-28763023 | None:intergenic | 55.0% | |
| GCGTAGACACTCCGTGTTGA+CGG | + | chr1_4:28763064-28763083 | None:intergenic | 55.0% | |
| ! | ACAGGAAGTGAAGATGGCGG+TGG | + | chr1_4:28763187-28763206 | None:intergenic | 55.0% |
| GTTCGAGGATTTGGACCAGC+TGG | + | chr1_4:28763311-28763330 | None:intergenic | 55.0% | |
| GATGGGTCTCTGCTTGTTCG+AGG | + | chr1_4:28763326-28763345 | None:intergenic | 55.0% | |
| !!! | TCCGGCGTCGGTCTTTTCTT+TGG | + | chr1_4:28763348-28763367 | None:intergenic | 55.0% |
| ! | GGGGTTGGATCGTTTTGCTC+CGG | + | chr1_4:28763366-28763385 | None:intergenic | 55.0% |
| GTTCGTGGTTTCAGTCGCTG+GGG | + | chr1_4:28763385-28763404 | None:intergenic | 55.0% | |
| GGTTCGTGGTTTCAGTCGCT+GGG | + | chr1_4:28763386-28763405 | None:intergenic | 55.0% | |
| TGGTTCGTGGTTTCAGTCGC+TGG | + | chr1_4:28763387-28763406 | None:intergenic | 55.0% | |
| GCGATCGACGACGAAAACCA+AGG | - | chr1_4:28763440-28763459 | Msa0158880:intron | 55.0% | |
| CAAAGAAAGGGGAGGATCGG+TGG | - | chr1_4:28763497-28763516 | Msa0158880:intron | 55.0% | |
| ! | GAGCAACTCGAAGTGCCCAT+TGG | + | chr1_4:28763994-28764013 | None:intergenic | 55.0% |
| CTTGGGGAGACAGAACAGCA+GGG | + | chr1_4:28764090-28764109 | None:intergenic | 55.0% | |
| TCTTGGGGAGACAGAACAGC+AGG | + | chr1_4:28764091-28764110 | None:intergenic | 55.0% | |
| CCACATGTTCTTGGGGGTGG+AGG | + | chr1_4:28760934-28760953 | None:intergenic | 60.0% | |
| CCTCCACCCCCAAGAACATG+TGG | - | chr1_4:28760931-28760950 | Msa0158880:CDS | 60.0% | |
| GCTGTTATGGGTGGACCACC+TGG | + | chr1_4:28760961-28760980 | None:intergenic | 60.0% | |
| AACCCAGCGAACCCACGTGT+GGG | - | chr1_4:28762788-28762807 | Msa0158880:intron | 60.0% | |
| TTCCCACACGTGGGTTCGCT+GGG | + | chr1_4:28762793-28762812 | None:intergenic | 60.0% | |
| ACGAACAGCAGCGACGCCAA+CGG | - | chr1_4:28763272-28763291 | Msa0158880:intron | 60.0% | |
| ! | GGATCGTTTTGCTCCGGCGT+CGG | + | chr1_4:28763360-28763379 | None:intergenic | 60.0% |
| GTGGTTTCAGTCGCTGGGGT+TGG | + | chr1_4:28763381-28763400 | None:intergenic | 60.0% | |
| AAAGGGGAGGATCGGTGGTG+CGG | - | chr1_4:28763502-28763521 | Msa0158880:intron | 60.0% | |
| TGGGTTCGCTGGGTTGTCCG+TGG | + | chr1_4:28762783-28762802 | None:intergenic | 65.0% | |
| CAACCCAGCGAACCCACGTG+TGG | - | chr1_4:28762787-28762806 | Msa0158880:intron | 65.0% | |
| GTTCCCACACGTGGGTTCGC+TGG | + | chr1_4:28762794-28762813 | None:intergenic | 65.0% | |
| GCTGCTGTTCGTTGCGGTGG+TGG | + | chr1_4:28763264-28763283 | None:intergenic | 65.0% | |
| GTCGCTGCTGTTCGTTGCGG+TGG | + | chr1_4:28763267-28763286 | None:intergenic | 65.0% | |
| GGCGTCGCTGCTGTTCGTTG+CGG | + | chr1_4:28763270-28763289 | None:intergenic | 65.0% | |
| CGCCGCCGTTCTCAAGGTAG+TGG | + | chr1_4:28763423-28763442 | None:intergenic | 65.0% | |
| GTCGATCGCCGCCGTTCTCA+AGG | + | chr1_4:28763429-28763448 | None:intergenic | 65.0% | |
| GAGGATCGGTGGTGCGGAGA+AGG | - | chr1_4:28763508-28763527 | Msa0158880:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 28760717 | 28764722 | 28760717 | ID=Msa0158880;Name=Msa0158880 |
| chr1_4 | mRNA | 28760717 | 28764722 | 28760717 | ID=Msa0158880-mRNA-1;Parent=Msa0158880;Name=Msa0158880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148|1|1|1|0.5|0.6|5|149|344 |
| chr1_4 | exon | 28760717 | 28760819 | 28760717 | ID=Msa0158880-mRNA-1:exon:9246;Parent=Msa0158880-mRNA-1 |
| chr1_4 | exon | 28760840 | 28761182 | 28760840 | ID=Msa0158880-mRNA-1:exon:9245;Parent=Msa0158880-mRNA-1 |
| chr1_4 | exon | 28761286 | 28761550 | 28761286 | ID=Msa0158880-mRNA-1:exon:9244;Parent=Msa0158880-mRNA-1 |
| chr1_4 | exon | 28764030 | 28764241 | 28764030 | ID=Msa0158880-mRNA-1:exon:9243;Parent=Msa0158880-mRNA-1 |
| chr1_4 | exon | 28764314 | 28764722 | 28764314 | ID=Msa0158880-mRNA-1:exon:9242;Parent=Msa0158880-mRNA-1 |
| chr1_4 | five_prime_UTR | 28764575 | 28764722 | 28764575 | ID=Msa0158880-mRNA-1:five_prime_utr;Parent=Msa0158880-mRNA-1 |
| chr1_4 | CDS | 28764314 | 28764574 | 28764314 | ID=Msa0158880-mRNA-1:cds;Parent=Msa0158880-mRNA-1 |
| chr1_4 | CDS | 28764030 | 28764241 | 28764030 | ID=Msa0158880-mRNA-1:cds;Parent=Msa0158880-mRNA-1 |
| chr1_4 | CDS | 28761286 | 28761550 | 28761286 | ID=Msa0158880-mRNA-1:cds;Parent=Msa0158880-mRNA-1 |
| chr1_4 | CDS | 28760886 | 28761182 | 28760886 | ID=Msa0158880-mRNA-1:cds;Parent=Msa0158880-mRNA-1 |
| chr1_4 | three_prime_UTR | 28760840 | 28760885 | 28760840 | ID=Msa0158880-mRNA-1:three_prime_utr;Parent=Msa0158880-mRNA-1 |
| chr1_4 | three_prime_UTR | 28760717 | 28760819 | 28760717 | ID=Msa0158880-mRNA-1:three_prime_utr;Parent=Msa0158880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
