Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067360 | XP_013467365.1 | 96.802 | 344 | 11 | 0 | 1 | 344 | 1 | 344 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067360 | A0A072VHZ9 | 96.802 | 344 | 11 | 0 | 1 | 344 | 1 | 344 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0067360 | 0.813025 | 3.154430e-51 | -8.615850e-47 |
| Msa0024680 | Msa0067360 | 0.815507 | 8.924450e-52 | -8.615850e-47 |
| Msa0027540 | Msa0067360 | 0.808719 | 2.696981e-50 | -8.615850e-47 |
| Msa0029540 | Msa0067360 | -0.819187 | 1.324575e-52 | -8.615850e-47 |
| Msa0032120 | Msa0067360 | 0.804093 | 2.548724e-49 | -8.615850e-47 |
| Msa0032370 | Msa0067360 | 0.803385 | 3.574958e-49 | -8.615850e-47 |
| Msa0032840 | Msa0067360 | -0.826377 | 2.805281e-54 | -8.615850e-47 |
| Msa0050430 | Msa0067360 | 0.801966 | 7.017020e-49 | -8.615850e-47 |
| Msa0062220 | Msa0067360 | 0.802388 | 5.745855e-49 | -8.615850e-47 |
| Msa0064560 | Msa0067360 | 0.801007 | 1.103059e-48 | -8.615850e-47 |
| Msa0067360 | Msa0095380 | 0.806051 | 9.924959e-50 | -8.615850e-47 |
| Msa0067360 | Msa0096670 | 0.800666 | 1.294957e-48 | -8.615850e-47 |
| Msa0067360 | Msa0105420 | 0.802374 | 5.783697e-49 | -8.615850e-47 |
| Msa0067360 | Msa0114540 | -0.825446 | 4.666905e-54 | -8.615850e-47 |
| Msa0067360 | Msa0120330 | 0.840229 | 9.859662e-58 | -8.615850e-47 |
| Msa0067360 | Msa0138970 | -0.808127 | 3.607233e-50 | -8.615850e-47 |
| Msa0067360 | Msa0143080 | 0.800070 | 1.712206e-48 | -8.615850e-47 |
| Msa0067360 | Msa0145950 | 0.803436 | 3.490084e-49 | -8.615850e-47 |
| Msa0067360 | Msa0147000 | -0.812238 | 4.686852e-51 | -8.615850e-47 |
| Msa0067360 | Msa0158880 | 0.818359 | 2.042766e-52 | -8.615850e-47 |
| Msa0067360 | Msa0168100 | 0.825981 | 3.483870e-54 | -8.615850e-47 |
| Msa0067360 | Msa0169140 | -0.820383 | 7.062321e-53 | -8.615850e-47 |
| Msa0067360 | Msa0172350 | 0.858337 | 8.831955e-63 | -8.615850e-47 |
| Msa0067360 | Msa0172960 | -0.804575 | 2.022231e-49 | -8.615850e-47 |
| Msa0067360 | Msa0185700 | 0.805441 | 1.333122e-49 | -8.615850e-47 |
| Msa0067360 | Msa0200950 | -0.819570 | 1.083437e-52 | -8.615850e-47 |
| Msa0067360 | Msa0207000 | 0.818600 | 1.800764e-52 | -8.615850e-47 |
| Msa0067360 | Msa0222920 | 0.875017 | 4.292138e-68 | -8.615850e-47 |
| Msa0067360 | Msa0230550 | -0.827557 | 1.464855e-54 | -8.615850e-47 |
| Msa0067360 | Msa0246690 | 0.806701 | 7.240637e-50 | -8.615850e-47 |
| Msa0067360 | Msa0258670 | -0.805588 | 1.241540e-49 | -8.615850e-47 |
| Msa0067360 | Msa0264350 | 0.847741 | 9.543488e-60 | -8.615850e-47 |
| Msa0067360 | Msa0267760 | 0.865393 | 6.103200e-65 | -8.615850e-47 |
| Msa0067360 | Msa0272480 | -0.802846 | 4.621555e-49 | -8.615850e-47 |
| Msa0067360 | Msa0275030 | 0.849015 | 4.240715e-60 | -8.615850e-47 |
| Msa0067360 | Msa0280900 | 0.801617 | 8.275460e-49 | -8.615850e-47 |
| Msa0067360 | Msa0302450 | 0.831761 | 1.389404e-55 | -8.615850e-47 |
| Msa0067360 | Msa0320100 | 0.804718 | 1.888548e-49 | -8.615850e-47 |
| Msa0067360 | Msa0339640 | 0.801072 | 1.069927e-48 | -8.615850e-47 |
| Msa0067360 | Msa0378080 | 0.824576 | 7.491004e-54 | -8.615850e-47 |
| Msa0067360 | Msa0392070 | 0.818055 | 2.393093e-52 | -8.615850e-47 |
| Msa0067360 | Msa0414950 | -0.821631 | 3.643798e-53 | -8.615850e-47 |
| Msa0067360 | Msa0423360 | -0.829421 | 5.196203e-55 | -8.615850e-47 |
| Msa0067360 | Msa0425940 | 0.825775 | 3.900387e-54 | -8.615850e-47 |
| Msa0067360 | Msa0426020 | 0.821104 | 4.820018e-53 | -8.615850e-47 |
| Msa0067360 | Msa0426160 | 0.822933 | 1.816721e-53 | -8.615850e-47 |
| Msa0067360 | Msa0436280 | -0.819464 | 1.145352e-52 | -8.615850e-47 |
| Msa0067360 | Msa0437710 | 0.814655 | 1.379349e-51 | -8.615850e-47 |
| Msa0067360 | Msa0467900 | -0.810158 | 1.324829e-50 | -8.615850e-47 |
| Msa0067360 | Msa0469910 | -0.818662 | 1.743631e-52 | -8.615850e-47 |
| Msa0067360 | Msa0470180 | 0.811060 | 8.457776e-51 | -8.615850e-47 |
| Msa0067360 | Msa0480320 | 0.804952 | 1.687241e-49 | -8.615850e-47 |
| Msa0067360 | Msa0490350 | 0.805319 | 1.414062e-49 | -8.615850e-47 |
| Msa0067360 | Msa0508200 | 0.810930 | 9.022847e-51 | -8.615850e-47 |
| Msa0067360 | Msa0509970 | 0.816749 | 4.709132e-52 | -8.615850e-47 |
| Msa0067360 | Msa0518040 | 0.811861 | 5.665646e-51 | -8.615850e-47 |
| Msa0067360 | Msa0521310 | 0.811683 | 6.192959e-51 | -8.615850e-47 |
| Msa0067360 | Msa0526700 | 0.802491 | 5.471078e-49 | -8.615850e-47 |
| Msa0067360 | Msa0526710 | 0.862279 | 5.671554e-64 | -8.615850e-47 |
| Msa0067360 | Msa0527590 | 0.806439 | 8.222907e-50 | -8.615850e-47 |
| Msa0067360 | Msa0532330 | 0.803273 | 3.771366e-49 | -8.615850e-47 |
| Msa0067360 | Msa0535030 | 0.825341 | 4.942643e-54 | -8.615850e-47 |
| Msa0067360 | Msa0535060 | 0.823833 | 1.119682e-53 | -8.615850e-47 |
| Msa0067360 | Msa0546380 | 0.809962 | 1.459590e-50 | -8.615850e-47 |
| Msa0067360 | Msa0546840 | 0.816002 | 6.921307e-52 | -8.615850e-47 |
| Msa0067360 | Msa0577940 | -0.806059 | 9.885042e-50 | -8.615850e-47 |
| Msa0067360 | Msa0579290 | 0.820022 | 8.542460e-53 | -8.615850e-47 |
| Msa0067360 | Msa0579390 | 0.831015 | 2.120433e-55 | -8.615850e-47 |
| Msa0067360 | Msa0591060 | 0.805555 | 1.261666e-49 | -8.615850e-47 |
| Msa0067360 | Msa0591770 | 0.833750 | 4.457080e-56 | -8.615850e-47 |
| Msa0067360 | Msa0607200 | 0.826138 | 3.198155e-54 | -8.615850e-47 |
| Msa0067360 | Msa0625530 | -0.814855 | 1.245837e-51 | -8.615850e-47 |
| Msa0067360 | Msa0638280 | 0.808257 | 3.384723e-50 | -8.615850e-47 |
| Msa0067360 | Msa0647130 | 0.808295 | 3.322276e-50 | -8.615850e-47 |
| Msa0067360 | Msa0669850 | 0.837739 | 4.350566e-57 | -8.615850e-47 |
| Msa0067360 | Msa0689010 | 0.801835 | 7.465792e-49 | -8.615850e-47 |
| Msa0067360 | Msa0692080 | 0.807261 | 5.511887e-50 | -8.615850e-47 |
| Msa0067360 | Msa0703590 | 0.833303 | 5.762361e-56 | -8.615850e-47 |
| Msa0067360 | Msa0709190 | 0.835255 | 1.866430e-56 | -8.615850e-47 |
| Msa0067360 | Msa0754720 | -0.812265 | 4.624966e-51 | -8.615850e-47 |
| Msa0067360 | Msa0756630 | -0.807406 | 5.135171e-50 | -8.615850e-47 |
| Msa0067360 | Msa0760380 | 0.800709 | 1.269037e-48 | -8.615850e-47 |
| Msa0067360 | Msa0813720 | 0.807446 | 5.034275e-50 | -8.615850e-47 |
| Msa0067360 | Msa0845750 | 0.803560 | 3.289155e-49 | -8.615850e-47 |
| Msa0067360 | Msa0850960 | 0.811242 | 7.720199e-51 | -8.615850e-47 |
| Msa0067360 | Msa0874500 | 0.812196 | 4.788566e-51 | -8.615850e-47 |
| Msa0067360 | Msa0890250 | 0.808956 | 2.400463e-50 | -8.615850e-47 |
| Msa0067360 | Msa0907380 | 0.805443 | 1.331659e-49 | -8.615850e-47 |
| Msa0067360 | Msa0910400 | 0.809856 | 1.538548e-50 | -8.615850e-47 |
| Msa0067360 | Msa0969570 | 0.810592 | 1.067523e-50 | -8.615850e-47 |
| Msa0067360 | Msa1000300 | 0.821910 | 3.139914e-53 | -8.615850e-47 |
| Msa0067360 | Msa1000940 | 0.820280 | 7.456570e-53 | -8.615850e-47 |
| Msa0067360 | Msa1004900 | -0.828551 | 8.443341e-55 | -8.615850e-47 |
| Msa0067360 | Msa1007610 | -0.800529 | 1.381288e-48 | -8.615850e-47 |
| Msa0067360 | Msa1037000 | 0.813801 | 2.129755e-51 | -8.615850e-47 |
| Msa0067360 | Msa1040120 | 0.854049 | 1.594141e-61 | -8.615850e-47 |
| Msa0067360 | Msa1044340 | 0.802567 | 5.277652e-49 | -8.615850e-47 |
| Msa0067360 | Msa1054240 | 0.810843 | 9.420700e-51 | -8.615850e-47 |
| Msa0067360 | Msa1082700 | 0.815866 | 7.422396e-52 | -8.615850e-47 |
| Msa0067360 | Msa1094420 | 0.803596 | 3.233034e-49 | -8.615850e-47 |
| Msa0067360 | Msa1104000 | 0.801681 | 8.027382e-49 | -8.615850e-47 |
| Msa0067360 | Msa1113200 | 0.801587 | 8.394105e-49 | -8.615850e-47 |
| Msa0067360 | Msa1132520 | 0.832527 | 8.983601e-56 | -8.615850e-47 |
| Msa0067360 | Msa1171690 | 0.807313 | 5.373230e-50 | -8.615850e-47 |
| Msa0067360 | Msa1217860 | 0.809411 | 1.917758e-50 | -8.615850e-47 |
| Msa0067360 | Msa1222970 | 0.804519 | 2.077723e-49 | -8.615850e-47 |
| Msa0067360 | Msa1226510 | 0.809945 | 1.472352e-50 | -8.615850e-47 |
| Msa0067360 | Msa1237030 | 0.825378 | 4.842490e-54 | -8.615850e-47 |
| Msa0067360 | Msa1264020 | 0.807767 | 4.304055e-50 | -8.615850e-47 |
| Msa0067360 | Msa1265070 | 0.807208 | 5.655455e-50 | -8.615850e-47 |
| Msa0067360 | Msa1269580 | -0.815890 | 7.331715e-52 | -8.615850e-47 |
| Msa0067360 | Msa1280130 | 0.807785 | 4.265459e-50 | -8.615850e-47 |
| Msa0067360 | Msa1284260 | 0.800394 | 1.470989e-48 | -8.615850e-47 |
| Msa0067360 | Msa1323670 | 0.804733 | 1.874715e-49 | -8.615850e-47 |
| Msa0067360 | Msa1362510 | 0.809590 | 1.755247e-50 | -8.615850e-47 |
| Msa0067360 | Msa1382310 | 0.800403 | 1.465368e-48 | -8.615850e-47 |
| Msa0067360 | Msa1385900 | 0.801054 | 1.079043e-48 | -8.615850e-47 |
| Msa0067360 | Msa1390120 | 0.825380 | 4.839167e-54 | -8.615850e-47 |
| Msa0067360 | Msa1390310 | 0.843175 | 1.646465e-58 | -8.615850e-47 |
| Msa0067360 | Msa1395230 | -0.833881 | 4.132904e-56 | -8.615850e-47 |
| Msa0067360 | Msa1395530 | 0.825885 | 3.672221e-54 | -8.615850e-47 |
| Msa0067360 | Msa1403930 | -0.813706 | 2.234819e-51 | -8.615850e-47 |
| Msa0067360 | Msa1429360 | -0.817479 | 3.227447e-52 | -8.615850e-47 |
| Msa0067360 | Msa1432640 | 0.810067 | 1.386110e-50 | -8.615850e-47 |
| Msa0067360 | Msa1437950 | 0.824102 | 9.680181e-54 | -8.615850e-47 |
| Msa0067360 | Msa1439960 | 0.806121 | 9.593789e-50 | -8.615850e-47 |
| Msa0067360 | Msa1463970 | 0.806469 | 8.104750e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067360 | MtrunA17_Chr1g0171181 | 88.663 | 344 | 10 | 1 | 1 | 344 | 1 | 315 | 0.0 | 618 |
| Msa0067360 | MtrunA17_Chr1g0178721 | 61.877 | 341 | 129 | 1 | 1 | 340 | 33 | 373 | 2.80e-163 | 461 |
| Msa0067360 | MtrunA17_Chr1g0178741 | 61.877 | 341 | 129 | 1 | 1 | 340 | 58 | 398 | 2.09e-162 | 459 |
| Msa0067360 | MtrunA17_Chr2g0321341 | 49.565 | 345 | 164 | 4 | 1 | 342 | 1 | 338 | 4.18e-125 | 362 |
| Msa0067360 | MtrunA17_Chr2g0321351 | 45.752 | 306 | 160 | 3 | 37 | 341 | 45 | 345 | 7.85e-98 | 294 |
| Msa0067360 | MtrunA17_Chr4g0026421 | 41.477 | 352 | 187 | 6 | 1 | 341 | 1 | 344 | 1.14e-96 | 291 |
| Msa0067360 | MtrunA17_Chr3g0136021 | 44.444 | 306 | 159 | 5 | 41 | 342 | 130 | 428 | 6.20e-90 | 276 |
| Msa0067360 | MtrunA17_Chr4g0029971 | 28.972 | 321 | 187 | 8 | 36 | 324 | 119 | 430 | 1.95e-36 | 137 |
| Msa0067360 | MtrunA17_Chr7g0263721 | 25.620 | 363 | 238 | 6 | 5 | 338 | 121 | 480 | 1.52e-35 | 135 |
| Msa0067360 | MtrunA17_Chr2g0321371 | 52.941 | 51 | 24 | 0 | 274 | 324 | 1 | 51 | 1.94e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067360 | AT1G74300.1 | 64.742 | 329 | 114 | 2 | 14 | 340 | 16 | 344 | 1.86e-155 | 440 |
| Msa0067360 | AT2G36290.1 | 59.184 | 343 | 139 | 1 | 1 | 342 | 17 | 359 | 2.35e-153 | 435 |
| Msa0067360 | AT2G36290.2 | 59.184 | 343 | 139 | 1 | 1 | 342 | 3 | 345 | 3.42e-153 | 434 |
| Msa0067360 | AT1G74280.1 | 60.125 | 321 | 127 | 1 | 21 | 340 | 41 | 361 | 1.82e-142 | 408 |
| Msa0067360 | AT1G74290.1 | 59.202 | 326 | 128 | 4 | 15 | 336 | 34 | 358 | 1.42e-138 | 398 |
| Msa0067360 | AT3G54240.1 | 54.655 | 333 | 151 | 0 | 8 | 340 | 12 | 344 | 8.24e-138 | 395 |
| Msa0067360 | AT3G48410.1 | 52.059 | 340 | 163 | 0 | 2 | 341 | 33 | 372 | 9.34e-138 | 397 |
| Msa0067360 | AT3G48410.2 | 52.059 | 340 | 163 | 0 | 2 | 341 | 75 | 414 | 2.73e-137 | 397 |
| Msa0067360 | AT5G22460.2 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 3.45e-133 | 383 |
| Msa0067360 | AT5G22460.3 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 3.45e-133 | 383 |
| Msa0067360 | AT5G22460.1 | 51.603 | 343 | 162 | 2 | 1 | 342 | 1 | 340 | 3.45e-133 | 383 |
| Msa0067360 | AT1G74300.2 | 62.857 | 245 | 90 | 1 | 97 | 340 | 1 | 245 | 3.80e-111 | 324 |
| Msa0067360 | AT3G03240.1 | 44.702 | 302 | 159 | 4 | 39 | 338 | 35 | 330 | 3.10e-94 | 284 |
| Msa0067360 | AT3G44510.2 | 44.444 | 306 | 160 | 4 | 41 | 341 | 8 | 308 | 3.85e-88 | 268 |
| Msa0067360 | AT3G03230.1 | 42.484 | 306 | 167 | 4 | 39 | 342 | 35 | 333 | 7.14e-87 | 265 |
| Msa0067360 | AT1G08310.2 | 41.720 | 314 | 170 | 5 | 33 | 341 | 2 | 307 | 1.44e-84 | 259 |
| Msa0067360 | AT1G08310.1 | 42.038 | 314 | 166 | 6 | 33 | 341 | 2 | 304 | 1.70e-83 | 256 |
| Msa0067360 | AT3G44510.3 | 49.490 | 196 | 94 | 2 | 41 | 236 | 8 | 198 | 8.35e-62 | 197 |
| Msa0067360 | AT1G08310.3 | 46.890 | 209 | 105 | 3 | 33 | 240 | 2 | 205 | 4.13e-61 | 196 |
| Msa0067360 | AT3G44510.1 | 37.745 | 204 | 120 | 3 | 143 | 341 | 1 | 202 | 7.14e-45 | 153 |
| Msa0067360 | AT3G44510.5 | 37.745 | 204 | 120 | 3 | 143 | 341 | 1 | 202 | 7.14e-45 | 153 |
| Msa0067360 | AT3G44510.4 | 37.745 | 204 | 120 | 3 | 143 | 341 | 1 | 202 | 7.14e-45 | 153 |
| Msa0067360 | AT5G02970.1 | 23.919 | 347 | 235 | 4 | 5 | 324 | 126 | 470 | 4.67e-30 | 120 |
| Msa0067360 | AT3G09690.1 | 26.154 | 325 | 193 | 9 | 36 | 324 | 160 | 473 | 5.91e-28 | 114 |
| Msa0067360 | AT3G09690.2 | 26.154 | 325 | 193 | 9 | 36 | 324 | 160 | 473 | 5.91e-28 | 114 |
Find 90 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTATCCTTGGTGCTGTTA+TGG | 0.220069 | 1_2:+32311112 | None:intergenic |
| AATGGGTGGACAAGCTGTTT+GGG | 0.243133 | 1_2:-32310723 | Msa0067360:CDS |
| CAATGGGTGGACAAGCTGTT+TGG | 0.247206 | 1_2:-32310724 | Msa0067360:CDS |
| TCTGGTGGTTTACTCAAAAT+TGG | 0.249224 | 1_2:-32308980 | Msa0067360:CDS |
| CGATAATTGGATTTGGAACT+TGG | 0.264289 | 1_2:-32308709 | Msa0067360:CDS |
| TTTATCCTTGGTGCTGTTAT+GGG | 0.264845 | 1_2:+32311113 | None:intergenic |
| CTGGTGAACCACATGTTCTT+GGG | 0.267606 | 1_2:+32311144 | None:intergenic |
| GTTAATTTGCTTTAGATTCT+CGG | 0.270263 | 1_2:-32308370 | Msa0067360:three_prime_UTR |
| ATATGTCGTGACACGATAAT+TGG | 0.275006 | 1_2:-32308722 | Msa0067360:CDS |
| TGAAAACAATTGATAAATCT+TGG | 0.301425 | 1_2:+32308910 | None:intergenic |
| GCACTCACTTCCTCGACATT+TGG | 0.310843 | 1_2:+32308518 | None:intergenic |
| ATGTTCCATGGCTTACATTC+TGG | 0.314084 | 1_2:-32308998 | Msa0067360:CDS |
| GCTCCCTTAAAAGTGCAAAT+TGG | 0.340576 | 1_2:-32308333 | Msa0067360:three_prime_UTR |
| CCTGGTGAACCACATGTTCT+TGG | 0.342532 | 1_2:+32311143 | None:intergenic |
| CCTACATCAAGTGTAGTAAA+AGG | 0.347381 | 1_2:-32308954 | Msa0067360:CDS |
| TGGAACACCATGTTCTTTGT+AGG | 0.351078 | 1_2:+32311067 | None:intergenic |
| TTAGGGGTTGCTTGAAGAAT+TGG | 0.352823 | 1_2:-32310891 | Msa0067360:intron |
| CGTGACACGATAATTGGATT+TGG | 0.353441 | 1_2:-32308716 | Msa0067360:CDS |
| ACTTGCAGATAAGCTGGAAT+TGG | 0.353841 | 1_2:-32310774 | Msa0067360:CDS |
| TGATCTTGATAACCCTTTCC+CGG | 0.358214 | 1_2:-32308672 | Msa0067360:CDS |
| GTCCAGCACCTTGCAATTCA+TGG | 0.359218 | 1_2:+32308549 | None:intergenic |
| GAAAACAATTGATAAATCTT+GGG | 0.362671 | 1_2:+32308911 | None:intergenic |
| ATACAATCAAAGTTCATCTA+TGG | 0.365095 | 1_2:-32308646 | Msa0067360:CDS |
| AATCCTCAAAACACAGTTGA+TGG | 0.370604 | 1_2:-32308492 | Msa0067360:CDS |
| CCATCTCTCAGCTTTATCCT+TGG | 0.381172 | 1_2:+32311101 | None:intergenic |
| TTGTGCAGGTTGCTCATAAT+AGG | 0.382450 | 1_2:+32309049 | None:intergenic |
| ATTGTATTCATACATGGGTT+TGG | 0.388797 | 1_2:-32311023 | Msa0067360:CDS |
| TGAACTTTGATTGTATTATC+CGG | 0.394168 | 1_2:+32308653 | None:intergenic |
| GTCAATATCACAATTACGTT+GGG | 0.396519 | 1_2:-32311319 | Msa0067360:five_prime_UTR |
| ATATATCGTTGCAGCGTAGC+AGG | 0.408666 | 1_2:+32308599 | None:intergenic |
| TAGGGGTTGCTTGAAGAATT+GGG | 0.419223 | 1_2:-32310890 | Msa0067360:CDS |
| TTCTTGCTAGCTAATTGTCT+TGG | 0.429772 | 1_2:+32311047 | None:intergenic |
| GCCTCAAATTCATTCCTCAT+AGG | 0.438299 | 1_2:-32310697 | Msa0067360:intron |
| GCTGAGAGATGGAAGACATT+TGG | 0.444386 | 1_2:-32311090 | Msa0067360:CDS |
| TACCATGAATTGCAAGGTGC+TGG | 0.459267 | 1_2:-32308551 | Msa0067360:CDS |
| GAACTTTGATTGTATTATCC+GGG | 0.468490 | 1_2:+32308654 | None:intergenic |
| GTCTGTTAACAAAGAACATC+AGG | 0.473018 | 1_2:-32308883 | Msa0067360:intron |
| CACAATTACGTTGGGAAAGA+CGG | 0.480454 | 1_2:-32311311 | Msa0067360:five_prime_UTR |
| AAGAAGATTGTATTCATACA+TGG | 0.487358 | 1_2:-32311029 | Msa0067360:CDS |
| ATCCTTGGTGCTGTTATGGG+TGG | 0.489509 | 1_2:+32311116 | None:intergenic |
| TTGATTGTATTATCCGGGAA+AGG | 0.490232 | 1_2:+32308659 | None:intergenic |
| TGATTGTATTATCCGGGAAA+GGG | 0.497339 | 1_2:+32308660 | None:intergenic |
| CTTGCAGATAAGCTGGAATT+GGG | 0.497644 | 1_2:-32310773 | Msa0067360:CDS |
| GAGTTTGGCTCTTGATGTTG+AGG | 0.503951 | 1_2:-32310798 | Msa0067360:CDS |
| ACCTATGAGGAATGAATTTG+AGG | 0.505317 | 1_2:+32310696 | None:intergenic |
| GCTGTTATGGGTGGACCACC+TGG | 0.508255 | 1_2:+32311125 | None:intergenic |
| TTCCATGGCTTACATTCTGG+TGG | 0.512659 | 1_2:-32308995 | Msa0067360:CDS |
| TGAGGAACTTGCAGATAAGC+TGG | 0.515897 | 1_2:-32310780 | Msa0067360:CDS |
| GAGTTGCTCATTATGTTCCA+TGG | 0.517308 | 1_2:-32309010 | Msa0067360:CDS |
| TGTCAATATCACAATTACGT+TGG | 0.521508 | 1_2:-32311320 | Msa0067360:five_prime_UTR |
| TCTTGGGGAGACAGAACAGC+AGG | 0.521518 | 1_2:+32308927 | None:intergenic |
| GCAACCTGCACAAGACCAAT+GGG | 0.529291 | 1_2:-32309039 | Msa0067360:CDS |
| ATGGGTGGACAAGCTGTTTG+GGG | 0.532746 | 1_2:-32310722 | Msa0067360:CDS |
| AATTCATGGTATTGAATCCA+TGG | 0.536985 | 1_2:+32308563 | None:intergenic |
| TTTATGACAACAGACTTGCT+GGG | 0.539829 | 1_2:-32309139 | Msa0067360:intron |
| CATTATCAGTGTTACCTATG+AGG | 0.543021 | 1_2:+32310683 | None:intergenic |
| CCAAGAACATGTGGTTCACC+AGG | 0.544937 | 1_2:-32311143 | Msa0067360:CDS |
| ATATATATTCACTTGAGTGT+TGG | 0.546488 | 1_2:-32311283 | Msa0067360:five_prime_UTR |
| TGCCACCAGTAGTTTACCAC+TGG | 0.548755 | 1_2:+32309101 | None:intergenic |
| TCATTTGATAGACCAGGGTA+TGG | 0.549328 | 1_2:-32310854 | Msa0067360:CDS |
| AGCAACCTGCACAAGACCAA+TGG | 0.551215 | 1_2:-32309040 | Msa0067360:CDS |
| AGAAGATTGTATTCATACAT+GGG | 0.557044 | 1_2:-32311028 | Msa0067360:CDS |
| AGTGCCCATTGGTCTTGTGC+AGG | 0.557180 | 1_2:+32309035 | None:intergenic |
| AAAACAATTGATAAATCTTG+GGG | 0.558275 | 1_2:+32308912 | None:intergenic |
| GATAATTGGATTTGGAACTT+GGG | 0.561009 | 1_2:-32308708 | Msa0067360:CDS |
| TGGTGAACCACATGTTCTTG+GGG | 0.561443 | 1_2:+32311145 | None:intergenic |
| CATTGCAACAAACCTTCCTA+AGG | 0.566740 | 1_2:-32310979 | Msa0067360:intron |
| AATTAATTATTACCTTAGGA+AGG | 0.569133 | 1_2:+32310967 | None:intergenic |
| GAGCAACTCGAAGTGCCCAT+TGG | 0.571357 | 1_2:+32309024 | None:intergenic |
| GTGGTAAACTACTGGTGGCA+TGG | 0.580926 | 1_2:-32309098 | Msa0067360:CDS |
| ATCAAAGTTCATCTATGGCA+AGG | 0.584167 | 1_2:-32308641 | Msa0067360:CDS |
| TGACTCCAGTGGTAAACTAC+TGG | 0.587202 | 1_2:-32309106 | Msa0067360:CDS |
| GTTGTGTCATTTGATAGACC+AGG | 0.594934 | 1_2:-32310860 | Msa0067360:CDS |
| CCAAGGATAAAGCTGAGAGA+TGG | 0.598249 | 1_2:-32311101 | Msa0067360:CDS |
| TATATCGTTGCAGCGTAGCA+GGG | 0.601081 | 1_2:+32308600 | None:intergenic |
| TTGTGTCATTTGATAGACCA+GGG | 0.602205 | 1_2:-32310859 | Msa0067360:CDS |
| AACCACCAGAATGTAAGCCA+TGG | 0.614041 | 1_2:+32308993 | None:intergenic |
| CATTTGGCCTACAAAGAACA+TGG | 0.621530 | 1_2:-32311074 | Msa0067360:CDS |
| CTCCAGTGGTAAACTACTGG+TGG | 0.624685 | 1_2:-32309103 | Msa0067360:CDS |
| AAAGGGTTATCAAGATCAAG+TGG | 0.630034 | 1_2:+32308677 | None:intergenic |
| TTATGACAACAGACTTGCTG+GGG | 0.632491 | 1_2:-32309138 | Msa0067360:intron |
| ATTCAATACCATGAATTGCA+AGG | 0.635449 | 1_2:-32308557 | Msa0067360:CDS |
| ACACTTGTTTCCAAATGTCG+AGG | 0.640167 | 1_2:-32308528 | Msa0067360:CDS |
| GCATCACTTTCTCCATACCC+TGG | 0.644710 | 1_2:+32310842 | None:intergenic |
| CAGTCACAAGTGAAACAACA+AGG | 0.646584 | 1_2:-32308758 | Msa0067360:CDS |
| GGTGAACCACATGTTCTTGG+GGG | 0.653985 | 1_2:+32311146 | None:intergenic |
| AGAACATGTGGTTCACCAGG+TGG | 0.673501 | 1_2:-32311140 | Msa0067360:CDS |
| GGCAACATTGATGACTCCAG+TGG | 0.685628 | 1_2:-32309117 | Msa0067360:CDS |
| CTTGGGGAGACAGAACAGCA+GGG | 0.724794 | 1_2:+32308928 | None:intergenic |
| GTCCACCCATAACAGCACCA+AGG | 0.749684 | 1_2:-32311118 | Msa0067360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATTTAATATT+TGG | + | chr1_2:32309389-32309408 | None:intergenic | 0.0% |
| !!! | TATTTATTTTTAATTTGGTT+AGG | - | chr1_2:32308772-32308791 | Msa0067360:intron | 10.0% |
| !!! | ATTTATTTTTAATTTGGTTA+GGG | - | chr1_2:32308773-32308792 | Msa0067360:intron | 10.0% |
| !! | TAAAAAAAAAAAAAAATGTG+TGG | + | chr1_2:32309045-32309064 | None:intergenic | 10.0% |
| !! | ATATTTGCATATTAAAAAAA+TGG | - | chr1_2:32309791-32309810 | Msa0067360:intron | 10.0% |
| !!! | TATTACTATTTTTTATTTGA+AGG | + | chr1_2:32310192-32310211 | None:intergenic | 10.0% |
| !! | TTAAAAAAGTAAATTAACAA+TGG | - | chr1_2:32310518-32310537 | Msa0067360:intron | 10.0% |
| !! | AAAAATACTAAAATTAACAA+CGG | + | chr1_2:32311243-32311262 | None:intergenic | 10.0% |
| !! | GTTCTTAATTAAAAATTTAA+AGG | - | chr1_2:32311285-32311304 | Msa0067360:five_prime_UTR | 10.0% |
| !!! | AATTTTCAAAATCATACTTA+AGG | + | chr1_2:32308742-32308761 | None:intergenic | 15.0% |
| !!! | TTTATTTTTAATTTGGTTAG+GGG | - | chr1_2:32308774-32308793 | Msa0067360:intron | 15.0% |
| !!! | AAACTTTTTCAATGAAATAT+AGG | + | chr1_2:32309233-32309252 | None:intergenic | 15.0% |
| !! | ATAAAACTCAAATTGAATAA+TGG | - | chr1_2:32310029-32310048 | Msa0067360:intron | 15.0% |
| !!! | AATTGATTTAAAATCAATAC+TGG | + | chr1_2:32310127-32310146 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTTCTTTTTGTA+AGG | - | chr1_2:32311252-32311271 | Msa0067360:five_prime_UTR | 15.0% |
| !!! | TAGTATTTTTCTTTTTGTAA+GGG | - | chr1_2:32311253-32311272 | Msa0067360:five_prime_UTR | 15.0% |
| !!! | AATTTTGTTGATTGGAATTT+TGG | - | chr1_2:32308483-32308502 | Msa0067360:CDS | 20.0% |
| !!! | ATTTTGTTGATTGGAATTTT+GGG | - | chr1_2:32308484-32308503 | Msa0067360:CDS | 20.0% |
| !! | AATTAATTATTACCTTAGGA+AGG | + | chr1_2:32308717-32308736 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATTTTTCCGTAT+CGG | - | chr1_2:32309867-32309886 | Msa0067360:intron | 20.0% |
| !!! | TGTAAATCATAGTTGTTTTT+TGG | + | chr1_2:32309980-32309999 | None:intergenic | 20.0% |
| !! | CTTTATAAAGTATATTGATG+TGG | + | chr1_2:32310245-32310264 | None:intergenic | 20.0% |
| !! | CACATCAATATACTTTATAA+AGG | - | chr1_2:32310243-32310262 | Msa0067360:intron | 20.0% |
| !!! | TCTCTAATCCAATTTTTAAA+AGG | - | chr1_2:32310278-32310297 | Msa0067360:intron | 20.0% |
| !!! | CTCTAATCCAATTTTTAAAA+GGG | - | chr1_2:32310279-32310298 | Msa0067360:intron | 20.0% |
| !! | AAAACAATTGATAAATCTTG+GGG | + | chr1_2:32310772-32310791 | None:intergenic | 20.0% |
| !! | GAAAACAATTGATAAATCTT+GGG | + | chr1_2:32310773-32310792 | None:intergenic | 20.0% |
| !! | TGAAAACAATTGATAAATCT+TGG | + | chr1_2:32310774-32310793 | None:intergenic | 20.0% |
| ! | ATATATATTCACTTGAGTGT+TGG | - | chr1_2:32308398-32308417 | Msa0067360:intron | 25.0% |
| !! | ATTGCATCAATTTTGTTGAT+TGG | - | chr1_2:32308475-32308494 | Msa0067360:exon | 25.0% |
| ! | AAGAAGATTGTATTCATACA+TGG | - | chr1_2:32308652-32308671 | Msa0067360:CDS | 25.0% |
| ! | AGAAGATTGTATTCATACAT+GGG | - | chr1_2:32308653-32308672 | Msa0067360:CDS | 25.0% |
| ! | GGTGAATTAATTATTACCTT+AGG | + | chr1_2:32308721-32308740 | None:intergenic | 25.0% |
| !! | AAACTCTTTACACTTCTTTT+TGG | + | chr1_2:32308869-32308888 | None:intergenic | 25.0% |
| !! | AAAAAGAAGTGTAAAGAGTT+TGG | - | chr1_2:32308868-32308887 | Msa0067360:intron | 25.0% |
| !! | AACAATTGATCTCTTAGTTT+TGG | + | chr1_2:32309263-32309282 | None:intergenic | 25.0% |
| ! | TTTAATATTTGGATACTCTC+CGG | + | chr1_2:32309378-32309397 | None:intergenic | 25.0% |
| ! | ACATTTCCTTTATCTTTCTT+TGG | - | chr1_2:32309532-32309551 | Msa0067360:intron | 25.0% |
| !! | TTTCCCTTTCTAAGAAATTA+GGG | - | chr1_2:32309591-32309610 | Msa0067360:intron | 25.0% |
| ! | AAACCCTAATTTCTTAGAAA+GGG | + | chr1_2:32309597-32309616 | None:intergenic | 25.0% |
| ! | TCAAAAATCAAGATACGATA+CGG | + | chr1_2:32309854-32309873 | None:intergenic | 25.0% |
| !! | AGATGACTAAAATCTTGTTT+CGG | - | chr1_2:32310077-32310096 | Msa0067360:intron | 25.0% |
| ! | TTCCTCCAAAAAAATAAGAT+GGG | - | chr1_2:32310100-32310119 | Msa0067360:intron | 25.0% |
| !!! | ATCCAATTTTTAAAAGGGAA+AGG | - | chr1_2:32310284-32310303 | Msa0067360:intron | 25.0% |
| !!! | AACCTTTCCCTTTTAAAAAT+TGG | + | chr1_2:32310289-32310308 | None:intergenic | 25.0% |
| !!! | ATTTTTAAAAGGGAAAGGTT+TGG | - | chr1_2:32310289-32310308 | Msa0067360:intron | 25.0% |
| ! | TAAAATGCAAAAAGTAACCA+TGG | - | chr1_2:32310469-32310488 | Msa0067360:intron | 25.0% |
| ! | AAAATGCAAAAAGTAACCAT+GGG | - | chr1_2:32310470-32310489 | Msa0067360:intron | 25.0% |
| ! | TGAACTTTGATTGTATTATC+CGG | + | chr1_2:32311031-32311050 | None:intergenic | 25.0% |
| ! | ATACAATCAAAGTTCATCTA+TGG | - | chr1_2:32311035-32311054 | Msa0067360:CDS | 25.0% |
| ! | ATATTGTTGAAAAACTTCCA+TGG | - | chr1_2:32311101-32311120 | Msa0067360:CDS | 25.0% |
| !! | TTTTTCTTTTTGTAAGGGAT+TGG | - | chr1_2:32311258-32311277 | Msa0067360:five_prime_UTR | 25.0% |
| !!! | GTTAATTTGCTTTAGATTCT+CGG | - | chr1_2:32311311-32311330 | Msa0067360:five_prime_UTR | 25.0% |
| TGTCAATATCACAATTACGT+TGG | - | chr1_2:32308361-32308380 | Msa0067360:three_prime_UTR | 30.0% | |
| GTCAATATCACAATTACGTT+GGG | - | chr1_2:32308362-32308381 | Msa0067360:three_prime_UTR | 30.0% | |
| ATTGTATTCATACATGGGTT+TGG | - | chr1_2:32308658-32308677 | Msa0067360:CDS | 30.0% | |
| !! | GGATCTAAGTTTTATGTCAT+GGG | - | chr1_2:32308929-32308948 | Msa0067360:CDS | 30.0% |
| ! | TTATGTCATGGGATTTTCAA+TGG | - | chr1_2:32308940-32308959 | Msa0067360:CDS | 30.0% |
| ! | TATGTCATGGGATTTTCAAT+GGG | - | chr1_2:32308941-32308960 | Msa0067360:CDS | 30.0% |
| AGACAAATTACACAATTCGT+CGG | - | chr1_2:32309095-32309114 | Msa0067360:CDS | 30.0% | |
| ! | CTTTCCCTTTCTAAGAAATT+AGG | - | chr1_2:32309590-32309609 | Msa0067360:intron | 30.0% |
| GAAACCCTAATTTCTTAGAA+AGG | + | chr1_2:32309598-32309617 | None:intergenic | 30.0% | |
| !! | TTCAACTTTTTCTTCCAAAG+TGG | - | chr1_2:32309615-32309634 | Msa0067360:intron | 30.0% |
| ATTAACAAACACAAGAAACC+AGG | + | chr1_2:32309771-32309790 | None:intergenic | 30.0% | |
| !!! | TAGTTGTTTTTTGGTTGAGT+GGG | + | chr1_2:32309971-32309990 | None:intergenic | 30.0% |
| !!! | ATAGTTGTTTTTTGGTTGAG+TGG | + | chr1_2:32309972-32309991 | None:intergenic | 30.0% |
| GTTCCTCCAAAAAAATAAGA+TGG | - | chr1_2:32310099-32310118 | Msa0067360:intron | 30.0% | |
| TCCTCCAAAAAAATAAGATG+GGG | - | chr1_2:32310101-32310120 | Msa0067360:intron | 30.0% | |
| AAAGTATATTGATGTGGACA+TGG | + | chr1_2:32310239-32310258 | None:intergenic | 30.0% | |
| ATAAAGTGTGACATGAATGT+AGG | - | chr1_2:32310336-32310355 | Msa0067360:intron | 30.0% | |
| AAGTAACCATGGGAAAAAAA+AGG | - | chr1_2:32310480-32310499 | Msa0067360:intron | 30.0% | |
| !!! | AGTATACCTTTTTTTTCCCA+TGG | + | chr1_2:32310489-32310508 | None:intergenic | 30.0% |
| ! | GATAATTGGATTTGGAACTT+GGG | - | chr1_2:32310973-32310992 | Msa0067360:intron | 30.0% |
| GAACTTTGATTGTATTATCC+GGG | + | chr1_2:32311030-32311049 | None:intergenic | 30.0% | |
| ! | AATTCATGGTATTGAATCCA+TGG | + | chr1_2:32311121-32311140 | None:intergenic | 30.0% |
| ATTCAATACCATGAATTGCA+AGG | - | chr1_2:32311124-32311143 | Msa0067360:CDS | 30.0% | |
| ! | CTTCCAATTTGCACTTTTAA+GGG | + | chr1_2:32311354-32311373 | None:intergenic | 30.0% |
| ! | ACTTCCAATTTGCACTTTTA+AGG | + | chr1_2:32311355-32311374 | None:intergenic | 30.0% |
| !! | GGCACTAACATAATTTTGAC+TGG | - | chr1_2:32308419-32308438 | Msa0067360:intron | 35.0% |
| !! | TTTATCCTTGGTGCTGTTAT+GGG | + | chr1_2:32308571-32308590 | None:intergenic | 35.0% |
| TTCTTGCTAGCTAATTGTCT+TGG | + | chr1_2:32308637-32308656 | None:intergenic | 35.0% | |
| !! | TTGTGTCATTTGATAGACCA+GGG | - | chr1_2:32308822-32308841 | Msa0067360:intron | 35.0% |
| !! | GGGATCTAAGTTTTATGTCA+TGG | - | chr1_2:32308928-32308947 | Msa0067360:CDS | 35.0% |
| ACCTATGAGGAATGAATTTG+AGG | + | chr1_2:32308988-32309007 | None:intergenic | 35.0% | |
| CATTATCAGTGTTACCTATG+AGG | + | chr1_2:32309001-32309020 | None:intergenic | 35.0% | |
| ! | AAAAATGTGTGGTCTGAGAT+AGG | + | chr1_2:32309034-32309053 | None:intergenic | 35.0% |
| !!! | CGTCATCCATTTTGAAGTAT+CGG | + | chr1_2:32309298-32309317 | None:intergenic | 35.0% |
| GAAAGATGCAATTGTTTGTG+TGG | + | chr1_2:32309575-32309594 | None:intergenic | 35.0% | |
| AATATTGACGACTAAGAGAG+TGG | + | chr1_2:32309720-32309739 | None:intergenic | 35.0% | |
| ! | TTTTATGACAACAGACTTGC+TGG | - | chr1_2:32310541-32310560 | Msa0067360:intron | 35.0% |
| ! | TTTATGACAACAGACTTGCT+GGG | - | chr1_2:32310542-32310561 | Msa0067360:intron | 35.0% |
| ! | TTGCTCATAATAGGCTTTTG+TGG | + | chr1_2:32310626-32310645 | None:intergenic | 35.0% |
| TCTGGTGGTTTACTCAAAAT+TGG | - | chr1_2:32310701-32310720 | Msa0067360:CDS | 35.0% | |
| ! | CCTTTTACTACACTTGATGT+AGG | + | chr1_2:32310730-32310749 | None:intergenic | 35.0% |
| CCTACATCAAGTGTAGTAAA+AGG | - | chr1_2:32310727-32310746 | Msa0067360:CDS | 35.0% | |
| GTCTGTTAACAAAGAACATC+AGG | - | chr1_2:32310798-32310817 | Msa0067360:CDS | 35.0% | |
| ATATGTCGTGACACGATAAT+TGG | - | chr1_2:32310959-32310978 | Msa0067360:intron | 35.0% | |
| ! | CGATAATTGGATTTGGAACT+TGG | - | chr1_2:32310972-32310991 | Msa0067360:intron | 35.0% |
| AAAGGGTTATCAAGATCAAG+TGG | + | chr1_2:32311007-32311026 | None:intergenic | 35.0% | |
| TGATTGTATTATCCGGGAAA+GGG | + | chr1_2:32311024-32311043 | None:intergenic | 35.0% | |
| TTGATTGTATTATCCGGGAA+AGG | + | chr1_2:32311025-32311044 | None:intergenic | 35.0% | |
| ATCAAAGTTCATCTATGGCA+AGG | - | chr1_2:32311040-32311059 | Msa0067360:CDS | 35.0% | |
| AATCCTCAAAACACAGTTGA+TGG | - | chr1_2:32311189-32311208 | Msa0067360:CDS | 35.0% | |
| ! | TATCCATCAACTGTGTTTTG+AGG | + | chr1_2:32311195-32311214 | None:intergenic | 35.0% |
| CACAATTACGTTGGGAAAGA+CGG | - | chr1_2:32308370-32308389 | Msa0067360:three_prime_UTR | 40.0% | |
| !! | CTTTATCCTTGGTGCTGTTA+TGG | + | chr1_2:32308572-32308591 | None:intergenic | 40.0% |
| CATTTGGCCTACAAAGAACA+TGG | - | chr1_2:32308607-32308626 | Msa0067360:CDS | 40.0% | |
| TGGAACACCATGTTCTTTGT+AGG | + | chr1_2:32308617-32308636 | None:intergenic | 40.0% | |
| CATTGCAACAAACCTTCCTA+AGG | - | chr1_2:32308702-32308721 | Msa0067360:CDS | 40.0% | |
| TTAGGGGTTGCTTGAAGAAT+TGG | - | chr1_2:32308790-32308809 | Msa0067360:intron | 40.0% | |
| TAGGGGTTGCTTGAAGAATT+GGG | - | chr1_2:32308791-32308810 | Msa0067360:intron | 40.0% | |
| !! | GTTGTGTCATTTGATAGACC+AGG | - | chr1_2:32308821-32308840 | Msa0067360:intron | 40.0% |
| TCATTTGATAGACCAGGGTA+TGG | - | chr1_2:32308827-32308846 | Msa0067360:intron | 40.0% | |
| ACTTGCAGATAAGCTGGAAT+TGG | - | chr1_2:32308907-32308926 | Msa0067360:CDS | 40.0% | |
| CTTGCAGATAAGCTGGAATT+GGG | - | chr1_2:32308908-32308927 | Msa0067360:CDS | 40.0% | |
| GCCTCAAATTCATTCCTCAT+AGG | - | chr1_2:32308984-32309003 | Msa0067360:CDS | 40.0% | |
| GAAGCTCCGATACTTCAAAA+TGG | - | chr1_2:32309289-32309308 | Msa0067360:intron | 40.0% | |
| ACACAAGTATCCGTGTGTAT+CGG | + | chr1_2:32309447-32309466 | None:intergenic | 40.0% | |
| CTGGCACCAAAGAAAGATAA+AGG | + | chr1_2:32309541-32309560 | None:intergenic | 40.0% | |
| TGCAATTGTTTGTGTGGTGT+GGG | + | chr1_2:32309569-32309588 | None:intergenic | 40.0% | |
| ATGCAATTGTTTGTGTGGTG+TGG | + | chr1_2:32309570-32309589 | None:intergenic | 40.0% | |
| AATCAAGATACGATACGGCT+GGG | + | chr1_2:32309849-32309868 | None:intergenic | 40.0% | |
| AAATCAAGATACGATACGGC+TGG | + | chr1_2:32309850-32309869 | None:intergenic | 40.0% | |
| !! | ATTTTTCCGTATCGGCGTAT+CGG | - | chr1_2:32309875-32309894 | Msa0067360:intron | 40.0% |
| GGAAAACGATGATCAAGGTT+AGG | + | chr1_2:32309946-32309965 | None:intergenic | 40.0% | |
| !!! | TGTTTTTTGGTTGAGTGGGT+GGG | + | chr1_2:32309967-32309986 | None:intergenic | 40.0% |
| !!! | TTGTTTTTTGGTTGAGTGGG+TGG | + | chr1_2:32309968-32309987 | None:intergenic | 40.0% |
| !!! | GCCCCATCTTATTTTTTTGG+AGG | + | chr1_2:32310105-32310124 | None:intergenic | 40.0% |
| !!! | CTGGCCCCATCTTATTTTTT+TGG | + | chr1_2:32310108-32310127 | None:intergenic | 40.0% |
| !! | AGGTTTGGTGTACACTCATA+CGG | - | chr1_2:32310304-32310323 | Msa0067360:intron | 40.0% |
| !! | TTATGACAACAGACTTGCTG+GGG | - | chr1_2:32310543-32310562 | Msa0067360:intron | 40.0% |
| ! | GCTTTTGTGGACATGTTGTA+AGG | + | chr1_2:32310613-32310632 | None:intergenic | 40.0% |
| TTGTGCAGGTTGCTCATAAT+AGG | + | chr1_2:32310635-32310654 | None:intergenic | 40.0% | |
| GAGTTGCTCATTATGTTCCA+TGG | - | chr1_2:32310671-32310690 | Msa0067360:intron | 40.0% | |
| ATGTTCCATGGCTTACATTC+TGG | - | chr1_2:32310683-32310702 | Msa0067360:intron | 40.0% | |
| CAGTCACAAGTGAAACAACA+AGG | - | chr1_2:32310923-32310942 | Msa0067360:intron | 40.0% | |
| CGTGACACGATAATTGGATT+TGG | - | chr1_2:32310965-32310984 | Msa0067360:intron | 40.0% | |
| ! | TGATCTTGATAACCCTTTCC+CGG | - | chr1_2:32311009-32311028 | Msa0067360:CDS | 40.0% |
| ACACTTGTTTCCAAATGTCG+AGG | - | chr1_2:32311153-32311172 | Msa0067360:CDS | 40.0% | |
| ! | GCTCCCTTAAAAGTGCAAAT+TGG | - | chr1_2:32311348-32311367 | Msa0067360:five_prime_UTR | 40.0% |
| TGGTGAACCACATGTTCTTG+GGG | + | chr1_2:32308539-32308558 | None:intergenic | 45.0% | |
| CTGGTGAACCACATGTTCTT+GGG | + | chr1_2:32308540-32308559 | None:intergenic | 45.0% | |
| ! | CCATCTCTCAGCTTTATCCT+TGG | + | chr1_2:32308583-32308602 | None:intergenic | 45.0% |
| CCAAGGATAAAGCTGAGAGA+TGG | - | chr1_2:32308580-32308599 | Msa0067360:CDS | 45.0% | |
| GCTGAGAGATGGAAGACATT+TGG | - | chr1_2:32308591-32308610 | Msa0067360:CDS | 45.0% | |
| !! | GAGTTTGGCTCTTGATGTTG+AGG | - | chr1_2:32308883-32308902 | Msa0067360:intron | 45.0% |
| TGAGGAACTTGCAGATAAGC+TGG | - | chr1_2:32308901-32308920 | Msa0067360:CDS | 45.0% | |
| ! | GTCATGGGATTTTCAATGGG+TGG | - | chr1_2:32308944-32308963 | Msa0067360:CDS | 45.0% |
| AATGGGTGGACAAGCTGTTT+GGG | - | chr1_2:32308958-32308977 | Msa0067360:CDS | 45.0% | |
| ! | GTGGTCTGAGATAGGATAGA+AGG | + | chr1_2:32309026-32309045 | None:intergenic | 45.0% |
| !! | GATACGTATCGGGAAGTATC+GGG | + | chr1_2:32309356-32309375 | None:intergenic | 45.0% |
| ! | GGATACGTATCGGGAAGTAT+CGG | + | chr1_2:32309357-32309376 | None:intergenic | 45.0% |
| GATACTTCCCGATACGTATC+CGG | - | chr1_2:32309356-32309375 | Msa0067360:intron | 45.0% | |
| ATACTCTCCGGATACGTATC+GGG | + | chr1_2:32309366-32309385 | None:intergenic | 45.0% | |
| GATACTCTCCGGATACGTAT+CGG | + | chr1_2:32309367-32309386 | None:intergenic | 45.0% | |
| ! | CGGGACGTATAGGAAAGTAT+CGG | + | chr1_2:32309427-32309446 | None:intergenic | 45.0% |
| CACAAGTATCCGTGTGTATC+GGG | + | chr1_2:32309446-32309465 | None:intergenic | 45.0% | |
| ATGTTAATGTGCTACGAGCC+TGG | - | chr1_2:32309750-32309769 | Msa0067360:intron | 45.0% | |
| TCCGTATCGTATCTCGTATC+CGG | - | chr1_2:32309910-32309929 | Msa0067360:intron | 45.0% | |
| TGACTCCAGTGGTAAACTAC+TGG | - | chr1_2:32310575-32310594 | Msa0067360:intron | 45.0% | |
| TTCCATGGCTTACATTCTGG+TGG | - | chr1_2:32310686-32310705 | Msa0067360:intron | 45.0% | |
| AACCACCAGAATGTAAGCCA+TGG | + | chr1_2:32310691-32310710 | None:intergenic | 45.0% | |
| TATATCGTTGCAGCGTAGCA+GGG | + | chr1_2:32311084-32311103 | None:intergenic | 45.0% | |
| ATATATCGTTGCAGCGTAGC+AGG | + | chr1_2:32311085-32311104 | None:intergenic | 45.0% | |
| TACCATGAATTGCAAGGTGC+TGG | - | chr1_2:32311130-32311149 | Msa0067360:CDS | 45.0% | |
| !!! | GTATTTATTTATTTTTAATT+TGG | - | chr1_2:32308767-32308786 | Msa0067360:intron | 5.0% |
| TCTTGGGGGTGGAGGTTTAA+TGG | + | chr1_2:32308524-32308543 | None:intergenic | 50.0% | |
| GGTGAACCACATGTTCTTGG+GGG | + | chr1_2:32308538-32308557 | None:intergenic | 50.0% | |
| CCTGGTGAACCACATGTTCT+TGG | + | chr1_2:32308541-32308560 | None:intergenic | 50.0% | |
| CCAAGAACATGTGGTTCACC+AGG | - | chr1_2:32308538-32308557 | Msa0067360:CDS | 50.0% | |
| AGAACATGTGGTTCACCAGG+TGG | - | chr1_2:32308541-32308560 | Msa0067360:CDS | 50.0% | |
| !! | ATCCTTGGTGCTGTTATGGG+TGG | + | chr1_2:32308568-32308587 | None:intergenic | 50.0% |
| GCATCACTTTCTCCATACCC+TGG | + | chr1_2:32308842-32308861 | None:intergenic | 50.0% | |
| CAATGGGTGGACAAGCTGTT+TGG | - | chr1_2:32308957-32308976 | Msa0067360:CDS | 50.0% | |
| ATGGGTGGACAAGCTGTTTG+GGG | - | chr1_2:32308959-32308978 | Msa0067360:CDS | 50.0% | |
| CCTATACGTCCCGATACACA+CGG | - | chr1_2:32309434-32309453 | Msa0067360:intron | 50.0% | |
| CACCGTCGAAGTCTTGGTAT+CGG | - | chr1_2:32309655-32309674 | Msa0067360:intron | 50.0% | |
| GTCCGATACCAAGACTTCGA+CGG | + | chr1_2:32309660-32309679 | None:intergenic | 50.0% | |
| ! | GTCTTGGTATCGGACGACTT+TGG | - | chr1_2:32309665-32309684 | Msa0067360:intron | 50.0% |
| CCCGGATACGAGATACGATA+CGG | + | chr1_2:32309914-32309933 | None:intergenic | 50.0% | |
| CCGTATCGTATCTCGTATCC+GGG | - | chr1_2:32309911-32309930 | Msa0067360:intron | 50.0% | |
| AAGGTTAGGTCTGTGAAGCC+CGG | + | chr1_2:32309932-32309951 | None:intergenic | 50.0% | |
| GGGTGGGAAAACGATGATCA+AGG | + | chr1_2:32309951-32309970 | None:intergenic | 50.0% | |
| ! | GGCAACATTGATGACTCCAG+TGG | - | chr1_2:32310564-32310583 | Msa0067360:intron | 50.0% |
| CTCCAGTGGTAAACTACTGG+TGG | - | chr1_2:32310578-32310597 | Msa0067360:intron | 50.0% | |
| TGCCACCAGTAGTTTACCAC+TGG | + | chr1_2:32310583-32310602 | None:intergenic | 50.0% | |
| GTGGTAAACTACTGGTGGCA+TGG | - | chr1_2:32310583-32310602 | Msa0067360:intron | 50.0% | |
| AGCAACCTGCACAAGACCAA+TGG | - | chr1_2:32310641-32310660 | Msa0067360:intron | 50.0% | |
| GCAACCTGCACAAGACCAAT+GGG | - | chr1_2:32310642-32310661 | Msa0067360:intron | 50.0% | |
| GTCCAGCACCTTGCAATTCA+TGG | + | chr1_2:32311135-32311154 | None:intergenic | 50.0% | |
| GCACTCACTTCCTCGACATT+TGG | + | chr1_2:32311166-32311185 | None:intergenic | 50.0% | |
| GAACCACATGTTCTTGGGGG+TGG | + | chr1_2:32308535-32308554 | None:intergenic | 55.0% | |
| GTCCACCCATAACAGCACCA+AGG | - | chr1_2:32308563-32308582 | Msa0067360:CDS | 55.0% | |
| !! | GGGAAGTATCGGGCAGGTAT+CGG | + | chr1_2:32309346-32309365 | None:intergenic | 55.0% |
| CCGTGTGTATCGGGACGTAT+AGG | + | chr1_2:32309437-32309456 | None:intergenic | 55.0% | |
| TTGTGTGGTGTGGGTCGTAC+TGG | + | chr1_2:32309560-32309579 | None:intergenic | 55.0% | |
| AAAGTGGACGGCGACCACTT+TGG | + | chr1_2:32309632-32309651 | None:intergenic | 55.0% | |
| AAAGTGGTCGCCGTCCACTT+TGG | - | chr1_2:32309631-32309650 | Msa0067360:intron | 55.0% | |
| TTTGGCCACCGTCGAAGTCT+TGG | - | chr1_2:32309649-32309668 | Msa0067360:intron | 55.0% | |
| CGATACCAAGACTTCGACGG+TGG | + | chr1_2:32309657-32309676 | None:intergenic | 55.0% | |
| ! | ACTGCACCGATACGCCGATA+CGG | + | chr1_2:32309884-32309903 | None:intergenic | 55.0% |
| !! | AGTGCCCATTGGTCTTGTGC+AGG | + | chr1_2:32310649-32310668 | None:intergenic | 55.0% |
| ! | GAGCAACTCGAAGTGCCCAT+TGG | + | chr1_2:32310660-32310679 | None:intergenic | 55.0% |
| CTTGGGGAGACAGAACAGCA+GGG | + | chr1_2:32310756-32310775 | None:intergenic | 55.0% | |
| TCTTGGGGAGACAGAACAGC+AGG | + | chr1_2:32310757-32310776 | None:intergenic | 55.0% | |
| CCACATGTTCTTGGGGGTGG+AGG | + | chr1_2:32308532-32308551 | None:intergenic | 60.0% | |
| CCTCCACCCCCAAGAACATG+TGG | - | chr1_2:32308529-32308548 | Msa0067360:CDS | 60.0% | |
| GCTGTTATGGGTGGACCACC+TGG | + | chr1_2:32308559-32308578 | None:intergenic | 60.0% | |
| CGCAGGATACGCAGGGGATA+CGG | + | chr1_2:32309323-32309342 | None:intergenic | 60.0% | |
| TATCGGCGCAGGATACGCAG+GGG | + | chr1_2:32309329-32309348 | None:intergenic | 60.0% | |
| ! | GTATCGGCGCAGGATACGCA+GGG | + | chr1_2:32309330-32309349 | None:intergenic | 60.0% |
| !! | CGTATCGGGAAGTATCGGGC+AGG | + | chr1_2:32309352-32309371 | None:intergenic | 60.0% |
| TCGACGGTGGCCAAAGTGGA+CGG | + | chr1_2:32309644-32309663 | None:intergenic | 60.0% | |
| GACTTCGACGGTGGCCAAAG+TGG | + | chr1_2:32309648-32309667 | None:intergenic | 60.0% | |
| !! | GGTATCGGCGCAGGATACGC+AGG | + | chr1_2:32309331-32309350 | None:intergenic | 65.0% |
| !! | TATCGGGCAGGTATCGGCGC+AGG | + | chr1_2:32309340-32309359 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 32308312 | 32311391 | 32308312 | ID=Msa0067360;Name=Msa0067360 |
| chr1_2 | mRNA | 32308312 | 32311391 | 32308312 | ID=Msa0067360-mRNA-1;Parent=Msa0067360;Name=Msa0067360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=151|1|1|1|0.75|0.6|5|149|344 |
| chr1_2 | exon | 32308312 | 32308414 | 32308312 | ID=Msa0067360-mRNA-1:exon:10580;Parent=Msa0067360-mRNA-1 |
| chr1_2 | exon | 32308435 | 32308777 | 32308435 | ID=Msa0067360-mRNA-1:exon:10579;Parent=Msa0067360-mRNA-1 |
| chr1_2 | exon | 32308884 | 32309148 | 32308884 | ID=Msa0067360-mRNA-1:exon:10578;Parent=Msa0067360-mRNA-1 |
| chr1_2 | exon | 32310698 | 32310909 | 32310698 | ID=Msa0067360-mRNA-1:exon:10577;Parent=Msa0067360-mRNA-1 |
| chr1_2 | exon | 32310980 | 32311391 | 32310980 | ID=Msa0067360-mRNA-1:exon:10576;Parent=Msa0067360-mRNA-1 |
| chr1_2 | five_prime_UTR | 32311241 | 32311391 | 32311241 | ID=Msa0067360-mRNA-1:five_prime_utr;Parent=Msa0067360-mRNA-1 |
| chr1_2 | CDS | 32310980 | 32311240 | 32310980 | ID=Msa0067360-mRNA-1:cds;Parent=Msa0067360-mRNA-1 |
| chr1_2 | CDS | 32310698 | 32310909 | 32310698 | ID=Msa0067360-mRNA-1:cds;Parent=Msa0067360-mRNA-1 |
| chr1_2 | CDS | 32308884 | 32309148 | 32308884 | ID=Msa0067360-mRNA-1:cds;Parent=Msa0067360-mRNA-1 |
| chr1_2 | CDS | 32308481 | 32308777 | 32308481 | ID=Msa0067360-mRNA-1:cds;Parent=Msa0067360-mRNA-1 |
| chr1_2 | three_prime_UTR | 32308435 | 32308480 | 32308435 | ID=Msa0067360-mRNA-1:three_prime_utr;Parent=Msa0067360-mRNA-1 |
| chr1_2 | three_prime_UTR | 32308312 | 32308414 | 32308312 | ID=Msa0067360-mRNA-1:three_prime_utr;Parent=Msa0067360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
