Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159410 | sp|O22212|PRP4L_ARATH | 65.079 | 126 | 42 | 2 | 30 | 154 | 198 | 322 | 1.79e-45 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159410 | A0A072V5R5 | 88.462 | 130 | 15 | 0 | 27 | 156 | 212 | 341 | 1.42e-73 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0159410 | Msa0266690 | 0.803391 | 3.565690e-49 | -8.615850e-47 |
| Msa0159410 | Msa1015730 | 0.806707 | 7.219388e-50 | -8.615850e-47 |
| Msa0159410 | Msa1451620 | -0.801262 | 9.781502e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159410 | MtrunA17_Chr3g0093681 | 88.462 | 130 | 15 | 0 | 27 | 156 | 212 | 341 | 7.67e-77 | 238 |
| Msa0159410 | MtrunA17_Chr1g0172501 | 88.462 | 130 | 15 | 0 | 27 | 156 | 212 | 341 | 9.30e-77 | 238 |
| Msa0159410 | MtrunA17_Chr5g0405851 | 90.769 | 130 | 12 | 0 | 27 | 156 | 94 | 223 | 6.89e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159410 | AT2G41500.1 | 65.079 | 126 | 42 | 2 | 30 | 154 | 198 | 322 | 1.82e-46 | 159 |
| Msa0159410 | AT2G41500.2 | 65.079 | 126 | 42 | 2 | 30 | 154 | 198 | 322 | 1.82e-46 | 159 |
| Msa0159410 | AT2G05720.1 | 55.200 | 125 | 55 | 1 | 30 | 153 | 6 | 130 | 7.34e-37 | 128 |
Find 128 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCTAATGGATATTATT+TGG | 0.195973 | 1_4:-29871601 | Msa0159410:three_prime_UTR |
| AGGAATCATGGAAGTTAATA+AGG | 0.230110 | 1_4:-29872869 | Msa0159410:five_prime_UTR |
| TCATCCTCAGCCTCGTCTTT+TGG | 0.235189 | 1_4:+29872556 | None:intergenic |
| GTGAGCCAATTACCCTCTTT+AGG | 0.250334 | 1_4:-29872696 | Msa0159410:five_prime_UTR |
| AATGATATACGATTTGTAAA+AGG | 0.255039 | 1_4:-29869311 | Msa0159410:three_prime_UTR |
| CATTCTCCCGTGATGGAAAA+AGG | 0.267924 | 1_4:-29872299 | Msa0159410:CDS |
| GGAGATGTTTGGCGACTTAC+TGG | 0.278679 | 1_4:-29872327 | Msa0159410:CDS |
| TACAAGAATATAGTTATTCT+AGG | 0.285024 | 1_4:+29871397 | None:intergenic |
| CTCTCCCTAAAGAGGGTAAT+TGG | 0.301620 | 1_4:+29872691 | None:intergenic |
| AAGATAACACTTGTCGCATT+TGG | 0.305670 | 1_4:-29871566 | Msa0159410:three_prime_UTR |
| TGAGCCAATTACCCTCTTTA+GGG | 0.313281 | 1_4:-29872695 | Msa0159410:five_prime_UTR |
| TTGCTAAATATTCTTTAGTA+AGG | 0.326881 | 1_4:-29872470 | Msa0159410:CDS |
| AGACAGGTTGCGGATGATTA+TGG | 0.341718 | 1_4:-29872653 | Msa0159410:five_prime_UTR |
| GGTCATAGTAGAAGTGTCTT+TGG | 0.342509 | 1_4:-29871858 | Msa0159410:three_prime_UTR |
| ATGACAAGACATGGAGGTTA+TGG | 0.358080 | 1_4:-29871917 | Msa0159410:three_prime_UTR |
| CCATCCATCACGGAAGTACT+TGG | 0.362124 | 1_4:-29871952 | Msa0159410:three_prime_UTR |
| CCTCACTGTCATGTCATTTG+TGG | 0.380191 | 1_4:+29872738 | None:intergenic |
| CTCTTCTTCTCCGGGCGCGT+TGG | 0.391190 | 1_4:+29872433 | None:intergenic |
| TAGTAGAAGTGTCTTTGGTT+TGG | 0.404201 | 1_4:-29871853 | Msa0159410:three_prime_UTR |
| AGATAACACTTGTCGCATTT+GGG | 0.409762 | 1_4:-29871565 | Msa0159410:three_prime_UTR |
| AATCTCGAATTCAGTGAAAT+CGG | 0.413810 | 1_4:-29872348 | Msa0159410:CDS |
| ACGCTCGGTGTGCCCCTTGA+AGG | 0.414199 | 1_4:+29872118 | None:intergenic |
| CCGGATCATCTCTTCTTCTC+CGG | 0.425886 | 1_4:+29872424 | None:intergenic |
| ACAGCTTTATCGTGCGATCA+TGG | 0.430256 | 1_4:+29869387 | None:intergenic |
| TAGACTAGTGAGGGAGCGGC+AGG | 0.452210 | 1_4:-29872815 | Msa0159410:five_prime_UTR |
| GTGGCCAAATAATATCCATT+AGG | 0.457947 | 1_4:+29871597 | None:intergenic |
| TCAGTGAAATCGGAGATGTT+TGG | 0.459296 | 1_4:-29872338 | Msa0159410:CDS |
| TGACAAGACATGGAGGTTAT+GGG | 0.460633 | 1_4:-29871916 | Msa0159410:three_prime_UTR |
| AGGTTATGGGACGTTGAAAC+AGG | 0.467715 | 1_4:-29871903 | Msa0159410:three_prime_UTR |
| CGGATCATCTCTTCTTCTCC+GGG | 0.468410 | 1_4:+29872425 | None:intergenic |
| CTCACTGTCATGTCATTTGT+GGG | 0.468698 | 1_4:+29872739 | None:intergenic |
| TAATTTAGAGTGAGCGGGAA+TGG | 0.472743 | 1_4:+29871515 | None:intergenic |
| CCTCTTTAGGGAGAGGGAGA+TGG | 0.472916 | 1_4:-29872683 | Msa0159410:five_prime_UTR |
| ATCTTGTGGAAAAGATGCTC+TGG | 0.473143 | 1_4:-29871802 | Msa0159410:three_prime_UTR |
| AGAAGTGTTCTAGCACTAGA+AGG | 0.473239 | 1_4:-29871753 | Msa0159410:three_prime_UTR |
| CATTTCAATAGTTTGCTGTC+CGG | 0.481771 | 1_4:+29872036 | None:intergenic |
| GCTCACCAAGATGGTGAAGA+TGG | 0.481808 | 1_4:+29872713 | None:intergenic |
| ATTGAGCCTTCATTGTGAAA+AGG | 0.486464 | 1_4:+29872523 | None:intergenic |
| CTAGGTAGAAAGAAATAGAA+AGG | 0.493080 | 1_4:+29871415 | None:intergenic |
| GGGAGATGGAGAGACGAGAC+AGG | 0.499314 | 1_4:-29872669 | Msa0159410:five_prime_UTR |
| TCTGCATCCACATCTTCATC+CGG | 0.502101 | 1_4:+29872405 | None:intergenic |
| CCGGAGAAGAAGAGATGATC+CGG | 0.512372 | 1_4:-29872424 | Msa0159410:CDS |
| TGGAGAGACGAGACAGGTTG+CGG | 0.513395 | 1_4:-29872663 | Msa0159410:five_prime_UTR |
| CCATCTCCCTCTCCCTAAAG+AGG | 0.514321 | 1_4:+29872683 | None:intergenic |
| AGGGCCCATCTTCACCATCT+TGG | 0.517307 | 1_4:-29872718 | Msa0159410:five_prime_UTR |
| CAGCTTTATCGTGCGATCAT+GGG | 0.518544 | 1_4:+29869388 | None:intergenic |
| AAAGCTAATTAAAGCTCTTG+AGG | 0.519301 | 1_4:-29872602 | Msa0159410:five_prime_UTR |
| TTTGGTATGTATTCTGCAGA+TGG | 0.520469 | 1_4:-29869431 | Msa0159410:intron |
| GATATTAATTTAGAGTGAGC+GGG | 0.522967 | 1_4:+29871510 | None:intergenic |
| CATACTATGGATGTTGACTA+AGG | 0.523420 | 1_4:-29869341 | Msa0159410:three_prime_UTR |
| ATGTGGATGCAGAGATGGAT+TGG | 0.524601 | 1_4:-29872395 | Msa0159410:CDS |
| GGAATCATGGAAGTTAATAA+GGG | 0.527623 | 1_4:-29872868 | Msa0159410:five_prime_UTR |
| GCAAACTATTGAAATGATCA+AGG | 0.527790 | 1_4:-29872029 | Msa0159410:exon |
| AGAGTAGACTAGTGAGGGAG+CGG | 0.528280 | 1_4:-29872819 | Msa0159410:five_prime_UTR |
| GAGGAGTTACTTCTTCAAGA+AGG | 0.528917 | 1_4:-29871879 | Msa0159410:three_prime_UTR |
| TGCTAAATATTCTTTAGTAA+GGG | 0.529743 | 1_4:-29872469 | Msa0159410:CDS |
| ATGGAAGTTAATAAGGGTAC+CGG | 0.531649 | 1_4:-29872862 | Msa0159410:five_prime_UTR |
| TGCAACATCAGTAGCACGCT+CGG | 0.532762 | 1_4:+29872103 | None:intergenic |
| TAGCAACTGCCTCTGCTGAC+CGG | 0.536136 | 1_4:-29872055 | Msa0159410:CDS |
| TTCTGATATCTCATACTCTC+CGG | 0.536136 | 1_4:+29872843 | None:intergenic |
| ACTAGAAGGTCATGTCAAAC+CGG | 0.536714 | 1_4:-29871739 | Msa0159410:intron |
| ACAAGTCAAATTTGAGCCAC+AGG | 0.537032 | 1_4:-29871487 | Msa0159410:three_prime_UTR |
| TACTCCAAAAGACGAGGCTG+AGG | 0.539532 | 1_4:-29872560 | Msa0159410:CDS |
| CAATATCAATCCTTGCATTG+AGG | 0.540524 | 1_4:+29872490 | None:intergenic |
| AATGGATATTATTTGGCCAC+CGG | 0.540780 | 1_4:-29871594 | Msa0159410:three_prime_UTR |
| AAGATGCTCTGGCTCGTGTG+TGG | 0.540960 | 1_4:-29871791 | Msa0159410:three_prime_UTR |
| TTTCTGATTCTCTCAATCGC+AGG | 0.542187 | 1_4:-29873248 | Msa0159410:intron |
| CAATTACCCTCTTTAGGGAG+AGG | 0.543638 | 1_4:-29872690 | Msa0159410:five_prime_UTR |
| GGTATGTATTCTGCAGATGG+TGG | 0.543802 | 1_4:-29869428 | Msa0159410:intron |
| GCGGATGATTATGGCAAAGC+TGG | 0.544053 | 1_4:-29872644 | Msa0159410:five_prime_UTR |
| CAAATTCTCTCCTCAATGCA+AGG | 0.551310 | 1_4:-29872500 | Msa0159410:CDS |
| CATTGCGTATCCAACGCGCC+CGG | 0.554053 | 1_4:-29872443 | Msa0159410:CDS |
| GATGGATTGGACATTGAAGC+AGG | 0.557147 | 1_4:-29872382 | Msa0159410:CDS |
| GCTAAATGATTATTGTGCAC+CGG | 0.557163 | 1_4:+29872074 | None:intergenic |
| AGAAATAGAAAGGTATACCT+TGG | 0.557959 | 1_4:+29871425 | None:intergenic |
| GGTTGCTCATTCTCCCGTGA+TGG | 0.560548 | 1_4:-29872306 | Msa0159410:CDS |
| AGAAGAGAGTAGACTAGTGA+GGG | 0.561487 | 1_4:-29872824 | Msa0159410:five_prime_UTR |
| AATTACCCTCTTTAGGGAGA+GGG | 0.561846 | 1_4:-29872689 | Msa0159410:five_prime_UTR |
| AGATGCTCTGGCTCGTGTGT+GGG | 0.562344 | 1_4:-29871790 | Msa0159410:three_prime_UTR |
| ATGCTCACTGGTAAAACCGC+TGG | 0.563669 | 1_4:+29869361 | None:intergenic |
| TGAAGATGTGGATGCAGAGA+TGG | 0.564479 | 1_4:-29872400 | Msa0159410:CDS |
| GGGTAATTGGCTCACCAAGA+TGG | 0.567255 | 1_4:+29872704 | None:intergenic |
| TACTGATGTTGCATATTCTC+CGG | 0.574958 | 1_4:-29872093 | Msa0159410:CDS |
| GTGAGCGGGAATGGTGTACA+AGG | 0.575996 | 1_4:+29871524 | None:intergenic |
| GCTGGATGCTGATGGACAGT+TGG | 0.576023 | 1_4:-29872626 | Msa0159410:five_prime_UTR |
| GTCAAATTTGAGCCACAGGA+GGG | 0.579066 | 1_4:-29871483 | Msa0159410:three_prime_UTR |
| CTTGTCGCATTTGGGACTTG+AGG | 0.581005 | 1_4:-29871557 | Msa0159410:three_prime_UTR |
| CTCACCAAGATGGTGAAGAT+GGG | 0.581081 | 1_4:+29872714 | None:intergenic |
| GGATATTATTTGGCCACCGG+TGG | 0.582174 | 1_4:-29871591 | Msa0159410:three_prime_UTR |
| CCAAGTACTTCCGTGATGGA+TGG | 0.582477 | 1_4:+29871952 | None:intergenic |
| GTGCCCAAGTACTTCCGTGA+TGG | 0.584302 | 1_4:+29871948 | None:intergenic |
| GGATCGTTAGCAGCATCTTG+TGG | 0.590492 | 1_4:-29871816 | Msa0159410:three_prime_UTR |
| TGATATTAATTTAGAGTGAG+CGG | 0.592127 | 1_4:+29871509 | None:intergenic |
| AACATCCATAGTATGCTCAC+TGG | 0.592453 | 1_4:+29869349 | None:intergenic |
| GTATGTATTCTGCAGATGGT+GGG | 0.593789 | 1_4:-29869427 | Msa0159410:intron |
| CAGAAGAGAGTAGACTAGTG+AGG | 0.594121 | 1_4:-29872825 | Msa0159410:five_prime_UTR |
| TAACTGGAGCTACTAAGTTG+TGG | 0.597008 | 1_4:-29872169 | Msa0159410:CDS |
| TAAAGCTCTTGAGGATGAAG+AGG | 0.597314 | 1_4:-29872593 | Msa0159410:exon |
| CATCCATCACGGAAGTACTT+GGG | 0.599215 | 1_4:-29871951 | Msa0159410:three_prime_UTR |
| CTGCTAGCGATGACAAGACA+TGG | 0.599501 | 1_4:-29871926 | Msa0159410:three_prime_UTR |
| CTAGCTACAGAATCAAGCTA+AGG | 0.601388 | 1_4:+29869243 | None:intergenic |
| ACAAGTGTTATCTTCACCAC+CGG | 0.606447 | 1_4:+29871575 | None:intergenic |
| GTACTTCCGTGATGGATGGA+AGG | 0.607689 | 1_4:+29871956 | None:intergenic |
| TGGAAGGCAATGCGTGCAAG+AGG | 0.610199 | 1_4:+29871972 | None:intergenic |
| ATGGCAAAGCTGGATGCTGA+TGG | 0.612950 | 1_4:-29872634 | Msa0159410:five_prime_UTR |
| AGTCAAATTTGAGCCACAGG+AGG | 0.613991 | 1_4:-29871484 | Msa0159410:three_prime_UTR |
| CTCGTATGACATGACAGCCA+AGG | 0.619445 | 1_4:-29871442 | Msa0159410:three_prime_UTR |
| CACAAATGACATGACAGTGA+GGG | 0.620697 | 1_4:-29872737 | Msa0159410:five_prime_UTR |
| AGATGATCCGGATGAAGATG+TGG | 0.621814 | 1_4:-29872412 | Msa0159410:CDS |
| TGCAAGACCTCATGATGAGG+AGG | 0.623658 | 1_4:-29872783 | Msa0159410:five_prime_UTR |
| ACGATAAAGCTGTGGTCCAG+CGG | 0.624106 | 1_4:-29869377 | Msa0159410:three_prime_UTR |
| TTGATTCTGTAGCTAGCCTG+TGG | 0.625212 | 1_4:-29869236 | Msa0159410:three_prime_UTR |
| CATCTCCCTCTCCCTAAAGA+GGG | 0.627820 | 1_4:+29872684 | None:intergenic |
| GAACACTTCTATCAGTTCGA+AGG | 0.630311 | 1_4:+29871766 | None:intergenic |
| GAGAATCAGAAACAGAGAGA+GGG | 0.631179 | 1_4:+29873259 | None:intergenic |
| TAGTAGATATGTGATACCAC+AGG | 0.634069 | 1_4:+29869220 | None:intergenic |
| GTTTGCTGTCCGGTCAGCAG+AGG | 0.638239 | 1_4:+29872046 | None:intergenic |
| CAATGCAAGACCTCATGATG+AGG | 0.644562 | 1_4:-29872786 | Msa0159410:five_prime_UTR |
| AGAGAATCAGAAACAGAGAG+AGG | 0.645595 | 1_4:+29873258 | None:intergenic |
| CAGCACGCCTCCTCATCATG+AGG | 0.667483 | 1_4:+29872776 | None:intergenic |
| CTTGGCTGTCATGTCATACG+AGG | 0.670866 | 1_4:+29871443 | None:intergenic |
| AGTGTTATCTTCACCACCGG+TGG | 0.673703 | 1_4:+29871578 | None:intergenic |
| GCATTGCCTTCCATCCATCA+CGG | 0.677579 | 1_4:-29871962 | Msa0159410:three_prime_UTR |
| ATGGGACGTTGAAACAGGAG+AGG | 0.684829 | 1_4:-29871898 | Msa0159410:three_prime_UTR |
| AACTTCTACTCCAAAAGACG+AGG | 0.686425 | 1_4:-29872566 | Msa0159410:CDS |
| ATGATCGCACGATAAAGCTG+TGG | 0.691055 | 1_4:-29869385 | Msa0159410:three_prime_UTR |
| CCACAAATGACATGACAGTG+AGG | 0.706470 | 1_4:-29872738 | Msa0159410:five_prime_UTR |
| CTAGCGATGACAAGACATGG+AGG | 0.784286 | 1_4:-29871923 | Msa0159410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAATAATAAGATA+AGG | + | chr1_4:29869243-29869262 | None:intergenic | 10.0% |
| !!! | ATTTTCTTTTATCATAAAAA+AGG | - | chr1_4:29871802-29871821 | Msa0159410:three_prime_UTR | 10.0% |
| !! | AGTATGTATTTATATAAAAA+AGG | + | chr1_4:29873270-29873289 | None:intergenic | 10.0% |
| !!! | TGTTCATAATTTGAAATAAA+AGG | + | chr1_4:29869339-29869358 | None:intergenic | 15.0% |
| !! | TTAACACATAAATATAAGTA+GGG | + | chr1_4:29871193-29871212 | None:intergenic | 15.0% |
| !! | GAATTAAAAAAGTTAACTAA+AGG | + | chr1_4:29872068-29872087 | None:intergenic | 15.0% |
| !! | ATAAAGAAATTATACATTTG+TGG | + | chr1_4:29872196-29872215 | None:intergenic | 15.0% |
| !! | TGTGCAATATATAATATTAT+AGG | + | chr1_4:29872845-29872864 | None:intergenic | 15.0% |
| !! | GAATAGAAAGAAAGTAAAAT+AGG | + | chr1_4:29869182-29869201 | None:intergenic | 20.0% |
| !! | AATAATACCAATAACATTCA+AGG | + | chr1_4:29869275-29869294 | None:intergenic | 20.0% |
| !!! | TAATTTCTTTCTCTTTTTAC+TGG | - | chr1_4:29869446-29869465 | Msa0159410:intron | 20.0% |
| !! | TTGCTAAATATTCTTTAGTA+AGG | - | chr1_4:29869870-29869889 | Msa0159410:intron | 20.0% |
| !! | TGCTAAATATTCTTTAGTAA+GGG | - | chr1_4:29869871-29869890 | Msa0159410:intron | 20.0% |
| !!! | GTAGAAACTTTTTTTACATT+AGG | + | chr1_4:29870203-29870222 | None:intergenic | 20.0% |
| !! | CTAAAAATGAAATTCAAGAA+TGG | + | chr1_4:29870702-29870721 | None:intergenic | 20.0% |
| !! | TACAAGAATATAGTTATTCT+AGG | + | chr1_4:29870946-29870965 | None:intergenic | 20.0% |
| !! | TGCATTTGATTATACTTATA+TGG | - | chr1_4:29870988-29871007 | Msa0159410:intron | 20.0% |
| !! | GCATTTGATTATACTTATAT+GGG | - | chr1_4:29870989-29871008 | Msa0159410:intron | 20.0% |
| !! | ACAAGTTAAGAAACTAAAAA+TGG | - | chr1_4:29871037-29871056 | Msa0159410:intron | 20.0% |
| !! | GTTAACACATAAATATAAGT+AGG | + | chr1_4:29871194-29871213 | None:intergenic | 20.0% |
| !! | TTAAGGTTTATTTCCTAAAT+GGG | - | chr1_4:29871730-29871749 | Msa0159410:intron | 20.0% |
| !! | AGAAAGAAAACATACAAATT+GGG | + | chr1_4:29871771-29871790 | None:intergenic | 20.0% |
| !! | AAGAAAGAAAACATACAAAT+TGG | + | chr1_4:29871772-29871791 | None:intergenic | 20.0% |
| !!! | TTTTTTTCAATGAATTTTCC+AGG | - | chr1_4:29871945-29871964 | Msa0159410:three_prime_UTR | 20.0% |
| !!! | TTTTTTCAATGAATTTTCCA+GGG | - | chr1_4:29871946-29871965 | Msa0159410:three_prime_UTR | 20.0% |
| !! | AATGGAATAACACATAAATA+AGG | - | chr1_4:29872148-29872167 | Msa0159410:CDS | 20.0% |
| !! | TAACACATAAATAAGGAAAA+AGG | - | chr1_4:29872155-29872174 | Msa0159410:CDS | 20.0% |
| !! | AACACATAAATAAGGAAAAA+GGG | - | chr1_4:29872156-29872175 | Msa0159410:CDS | 20.0% |
| !!! | GAAATCTGTTATTATAGTTT+TGG | + | chr1_4:29872441-29872460 | None:intergenic | 20.0% |
| !! | AATGATATACGATTTGTAAA+AGG | - | chr1_4:29873029-29873048 | Msa0159410:intron | 20.0% |
| ! | TTTGTTTCCTTGAATGTTAT+TGG | - | chr1_4:29869265-29869284 | Msa0159410:three_prime_UTR | 25.0% |
| !! | GTATGTTCTTTTTGCAAATT+GGG | - | chr1_4:29870075-29870094 | Msa0159410:intron | 25.0% |
| ! | AGAGAACTAGAAAAGAAAAA+GGG | + | chr1_4:29870152-29870171 | None:intergenic | 25.0% |
| ! | TAGAGAACTAGAAAAGAAAA+AGG | + | chr1_4:29870153-29870172 | None:intergenic | 25.0% |
| ! | AAAAAAAGTTTCTACCTTCA+AGG | - | chr1_4:29870208-29870227 | Msa0159410:intron | 25.0% |
| ! | AAAAAAGTTTCTACCTTCAA+GGG | - | chr1_4:29870209-29870228 | Msa0159410:intron | 25.0% |
| !!! | ATCTCTTTTGAGAACATTTA+AGG | - | chr1_4:29870334-29870353 | Msa0159410:intron | 25.0% |
| !!! | TCTCTTTTGAGAACATTTAA+GGG | - | chr1_4:29870335-29870354 | Msa0159410:intron | 25.0% |
| !!! | GAATTTCATTTTTAGATTCG+TGG | - | chr1_4:29870707-29870726 | Msa0159410:intron | 25.0% |
| !! | TTCTCCTAATGGATATTATT+TGG | - | chr1_4:29870739-29870758 | Msa0159410:intron | 25.0% |
| !! | TGATATTAATTTAGAGTGAG+CGG | + | chr1_4:29870834-29870853 | None:intergenic | 25.0% |
| ! | TATATTTATGTGTTAACCTC+AGG | - | chr1_4:29871197-29871216 | Msa0159410:intron | 25.0% |
| ! | TTCATTCACTATTTCACTAT+TGG | - | chr1_4:29871677-29871696 | Msa0159410:intron | 25.0% |
| ! | TAGGAAATAAACCTTAAGTT+AGG | + | chr1_4:29871727-29871746 | None:intergenic | 25.0% |
| ! | CTTAAGGTTTATTTCCTAAA+TGG | - | chr1_4:29871729-29871748 | Msa0159410:intron | 25.0% |
| !!! | TTTATTTCCTAAATGGGTTT+TGG | - | chr1_4:29871736-29871755 | Msa0159410:intron | 25.0% |
| ! | AAAGAAAACATACAAATTGG+GGG | + | chr1_4:29871769-29871788 | None:intergenic | 25.0% |
| ! | GAAAGAAAACATACAAATTG+GGG | + | chr1_4:29871770-29871789 | None:intergenic | 25.0% |
| !!! | TTTTTCAATGAATTTTCCAG+GGG | - | chr1_4:29871947-29871966 | Msa0159410:three_prime_UTR | 25.0% |
| ! | ACACATCAATCACATAATAA+TGG | - | chr1_4:29872130-29872149 | Msa0159410:CDS | 25.0% |
| !! | GTAGAGATAATTTTCATGAA+TGG | + | chr1_4:29872463-29872482 | None:intergenic | 25.0% |
| ! | AAAATGAAAATCCATTGCTA+TGG | + | chr1_4:29872522-29872541 | None:intergenic | 25.0% |
| !! | TTTTGTCATGTTGAAAAATG+AGG | - | chr1_4:29872556-29872575 | Msa0159410:CDS | 25.0% |
| ! | ATATGAAAAGGCTATGTAAA+AGG | + | chr1_4:29872592-29872611 | None:intergenic | 25.0% |
| !! | TTTTACATAGCCTTTTCATA+TGG | - | chr1_4:29872591-29872610 | Msa0159410:exon | 25.0% |
| !! | AATGATAATGTTTCGAAAAC+AGG | + | chr1_4:29872670-29872689 | None:intergenic | 25.0% |
| ! | CAAAAATGATGAATCTGATT+AGG | + | chr1_4:29873056-29873075 | None:intergenic | 25.0% |
| TAAACAAATAGAGAAAGGAG+CGG | + | chr1_4:29869157-29869176 | None:intergenic | 30.0% | |
| AGGCATAAACAAATAGAGAA+AGG | + | chr1_4:29869162-29869181 | None:intergenic | 30.0% | |
| ! | AATGCCTTTTATATCCAACT+TGG | - | chr1_4:29869376-29869395 | Msa0159410:three_prime_UTR | 30.0% |
| ! | GAATCCAAGTTGGATATAAA+AGG | + | chr1_4:29869383-29869402 | None:intergenic | 30.0% |
| ATCAACATTAGAATCCAAGT+TGG | + | chr1_4:29869393-29869412 | None:intergenic | 30.0% | |
| AGGAATCATGGAAGTTAATA+AGG | - | chr1_4:29869471-29869490 | Msa0159410:intron | 30.0% | |
| GGAATCATGGAAGTTAATAA+GGG | - | chr1_4:29869472-29869491 | Msa0159410:intron | 30.0% | |
| AAAGCTAATTAAAGCTCTTG+AGG | - | chr1_4:29869738-29869757 | Msa0159410:intron | 30.0% | |
| AATCTCGAATTCAGTGAAAT+CGG | - | chr1_4:29869992-29870011 | Msa0159410:intron | 30.0% | |
| ATTTGCAAAAAGAACATACC+AGG | + | chr1_4:29870074-29870093 | None:intergenic | 30.0% | |
| ! | GGTATGTTCTTTTTGCAAAT+TGG | - | chr1_4:29870074-29870093 | Msa0159410:intron | 30.0% |
| !!! | TTCTTTTCTAGTTCTCTAAC+TGG | - | chr1_4:29870155-29870174 | Msa0159410:intron | 30.0% |
| AAAAAGTTTCTACCTTCAAG+GGG | - | chr1_4:29870210-29870229 | Msa0159410:intron | 30.0% | |
| GCAAACTATTGAAATGATCA+AGG | - | chr1_4:29870311-29870330 | Msa0159410:intron | 30.0% | |
| !! | ATGATGGATAAATGAGAAGA+GGG | + | chr1_4:29870644-29870663 | None:intergenic | 30.0% |
| !! | AATGATGGATAAATGAGAAG+AGG | + | chr1_4:29870645-29870664 | None:intergenic | 30.0% |
| TGGAAAAACAGATAGAATGA+TGG | + | chr1_4:29870660-29870679 | None:intergenic | 30.0% | |
| ! | TTTTTCCATAGTATTTTGCC+AGG | - | chr1_4:29870672-29870691 | Msa0159410:intron | 30.0% |
| ! | GATATTAATTTAGAGTGAGC+GGG | + | chr1_4:29870833-29870852 | None:intergenic | 30.0% |
| ! | AGAAATAGAAAGGTATACCT+TGG | + | chr1_4:29870918-29870937 | None:intergenic | 30.0% |
| CTAGGTAGAAAGAAATAGAA+AGG | + | chr1_4:29870928-29870947 | None:intergenic | 30.0% | |
| GTCTTTACACTTAACACTAA+TGG | - | chr1_4:29871340-29871359 | Msa0159410:intron | 30.0% | |
| ! | ATAATAAAAGTACAGTGCCT+TGG | - | chr1_4:29871499-29871518 | Msa0159410:three_prime_UTR | 30.0% |
| TTGGACAATAAGCAATAGAT+GGG | - | chr1_4:29871518-29871537 | Msa0159410:three_prime_UTR | 30.0% | |
| ! | CATAGATTTTGAATGCTCAA+TGG | - | chr1_4:29871636-29871655 | Msa0159410:intron | 30.0% |
| TGAAATAGTGAATGAACTTG+GGG | + | chr1_4:29871673-29871692 | None:intergenic | 30.0% | |
| GTGAAATAGTGAATGAACTT+GGG | + | chr1_4:29871674-29871693 | None:intergenic | 30.0% | |
| AGTGAAATAGTGAATGAACT+TGG | + | chr1_4:29871675-29871694 | None:intergenic | 30.0% | |
| !!! | TTTCTGGTTTTCCTAACTTA+AGG | - | chr1_4:29871713-29871732 | Msa0159410:intron | 30.0% |
| AAGAAAACATACAAATTGGG+GGG | + | chr1_4:29871768-29871787 | None:intergenic | 30.0% | |
| AAATTATACATTTGTGGCTC+TGG | + | chr1_4:29872190-29872209 | None:intergenic | 30.0% | |
| AGCTTATAAGCCATATGAAA+AGG | + | chr1_4:29872604-29872623 | None:intergenic | 30.0% | |
| CATATTTCCAAACAAGTTCT+AGG | + | chr1_4:29872631-29872650 | None:intergenic | 30.0% | |
| ! | CTAGAACTTGTTTGGAAATA+TGG | - | chr1_4:29872629-29872648 | Msa0159410:five_prime_UTR | 30.0% |
| ! | ATCTAGTTTATGTGCTTTGA+AGG | - | chr1_4:29872785-29872804 | Msa0159410:five_prime_UTR | 30.0% |
| !!! | AGGTCTTCATTTTTTTCTTC+AGG | - | chr1_4:29872805-29872824 | Msa0159410:five_prime_UTR | 30.0% |
| !!! | TCTTCATTTTTTTCTTCAGG+TGG | - | chr1_4:29872808-29872827 | Msa0159410:five_prime_UTR | 30.0% |
| CAAGAAAGGCAAAAATAACA+TGG | + | chr1_4:29872882-29872901 | None:intergenic | 30.0% | |
| TACCAAAATCAGTACAAGAA+AGG | + | chr1_4:29872896-29872915 | None:intergenic | 30.0% | |
| TAAGATAAGGCAAAGCAGTA+CGG | + | chr1_4:29869230-29869249 | None:intergenic | 35.0% | |
| !! | TCTTTCTCTTTTTACTGGCT+AGG | - | chr1_4:29869451-29869470 | Msa0159410:intron | 35.0% |
| !! | TTTTTACTGGCTAGGAATCA+TGG | - | chr1_4:29869459-29869478 | Msa0159410:intron | 35.0% |
| ! | ATGGAAGTTAATAAGGGTAC+CGG | - | chr1_4:29869478-29869497 | Msa0159410:intron | 35.0% |
| TTCTGATATCTCATACTCTC+CGG | + | chr1_4:29869500-29869519 | None:intergenic | 35.0% | |
| ! | CAGTAACCTTTTCACAATGA+AGG | - | chr1_4:29869811-29869830 | Msa0159410:intron | 35.0% |
| ATTGAGCCTTCATTGTGAAA+AGG | + | chr1_4:29869820-29869839 | None:intergenic | 35.0% | |
| CAATATCAATCCTTGCATTG+AGG | + | chr1_4:29869853-29869872 | None:intergenic | 35.0% | |
| ATTAGACAAGGCAAGTAAGA+TGG | + | chr1_4:29870120-29870139 | None:intergenic | 35.0% | |
| TACTGATGTTGCATATTCTC+CGG | - | chr1_4:29870247-29870266 | Msa0159410:intron | 35.0% | |
| GCTAAATGATTATTGTGCAC+CGG | + | chr1_4:29870269-29870288 | None:intergenic | 35.0% | |
| !! | CATTTCAATAGTTTGCTGTC+CGG | + | chr1_4:29870307-29870326 | None:intergenic | 35.0% |
| !! | TAGTAGAAGTGTCTTTGGTT+TGG | - | chr1_4:29870487-29870506 | Msa0159410:intron | 35.0% |
| GGCGATCTTTAATATCTTAC+CGG | + | chr1_4:29870623-29870642 | None:intergenic | 35.0% | |
| GTGGCCAAATAATATCCATT+AGG | + | chr1_4:29870746-29870765 | None:intergenic | 35.0% | |
| AATGGATATTATTTGGCCAC+CGG | - | chr1_4:29870746-29870765 | Msa0159410:intron | 35.0% | |
| AAGATAACACTTGTCGCATT+TGG | - | chr1_4:29870774-29870793 | Msa0159410:intron | 35.0% | |
| AGATAACACTTGTCGCATTT+GGG | - | chr1_4:29870775-29870794 | Msa0159410:intron | 35.0% | |
| !! | TTTCTTAACTTGTGCCCTTA+GGG | + | chr1_4:29871030-29871049 | None:intergenic | 35.0% |
| ACACTAATGGCTGAAAACAT+TGG | - | chr1_4:29871353-29871372 | Msa0159410:intron | 35.0% | |
| ATAGAAAGAGCTCGTAACAT+GGG | - | chr1_4:29871423-29871442 | Msa0159410:three_prime_UTR | 35.0% | |
| CATCTATTGCTTATTGTCCA+AGG | + | chr1_4:29871519-29871538 | None:intergenic | 35.0% | |
| CTTGGACAATAAGCAATAGA+TGG | - | chr1_4:29871517-29871536 | Msa0159410:three_prime_UTR | 35.0% | |
| TGTATACATATTCCCAGAGA+AGG | - | chr1_4:29871579-29871598 | Msa0159410:three_prime_UTR | 35.0% | |
| GCAACATAATTTCCTTCTCT+GGG | + | chr1_4:29871594-29871613 | None:intergenic | 35.0% | |
| AGCAACATAATTTCCTTCTC+TGG | + | chr1_4:29871595-29871614 | None:intergenic | 35.0% | |
| AAATAGTGAATGAACTTGGG+GGG | + | chr1_4:29871671-29871690 | None:intergenic | 35.0% | |
| GAAATAGTGAATGAACTTGG+GGG | + | chr1_4:29871672-29871691 | None:intergenic | 35.0% | |
| AAGGAAAAACCTAACACTGA+TGG | - | chr1_4:29871821-29871840 | Msa0159410:three_prime_UTR | 35.0% | |
| !! | TTTCCACTCCTTTTGGAAAA+TGG | - | chr1_4:29871847-29871866 | Msa0159410:three_prime_UTR | 35.0% |
| ! | GATTCTCTCCATTTTCCAAA+AGG | + | chr1_4:29871858-29871877 | None:intergenic | 35.0% |
| ! | TGTGTGTCAATGAGTTTTTG+TGG | + | chr1_4:29871989-29872008 | None:intergenic | 35.0% |
| AATTCATCGTGTACAAGTGA+AGG | - | chr1_4:29872083-29872102 | Msa0159410:CDS | 35.0% | |
| CTATGGATTTCCTTTCACTT+TGG | + | chr1_4:29872505-29872524 | None:intergenic | 35.0% | |
| TGAAAGGAAATCCATAGCAA+TGG | - | chr1_4:29872508-29872527 | Msa0159410:CDS | 35.0% | |
| !!! | TGCCTTTCTTGTACTGATTT+TGG | - | chr1_4:29872891-29872910 | Msa0159410:intron | 35.0% |
| TTTGGTATGTATTCTGCAGA+TGG | - | chr1_4:29872909-29872928 | Msa0159410:intron | 35.0% | |
| ! | TTTTACCAGTGAGCATACTA+TGG | - | chr1_4:29872986-29873005 | Msa0159410:intron | 35.0% |
| ! | CATACTATGGATGTTGACTA+AGG | - | chr1_4:29872999-29873018 | Msa0159410:intron | 35.0% |
| TAGTAGATATGTGATACCAC+AGG | + | chr1_4:29873123-29873142 | None:intergenic | 35.0% | |
| GAGAATCAGAAACAGAGAGA+GGG | + | chr1_4:29869084-29869103 | None:intergenic | 40.0% | |
| AGAGAATCAGAAACAGAGAG+AGG | + | chr1_4:29869085-29869104 | None:intergenic | 40.0% | |
| TTTCTGATTCTCTCAATCGC+AGG | - | chr1_4:29869092-29869111 | Msa0159410:three_prime_UTR | 40.0% | |
| AGAAGAGAGTAGACTAGTGA+GGG | - | chr1_4:29869516-29869535 | Msa0159410:intron | 40.0% | |
| ! | CTCACTGTCATGTCATTTGT+GGG | + | chr1_4:29869604-29869623 | None:intergenic | 40.0% |
| CACAAATGACATGACAGTGA+GGG | - | chr1_4:29869603-29869622 | Msa0159410:intron | 40.0% | |
| TGAGCCAATTACCCTCTTTA+GGG | - | chr1_4:29869645-29869664 | Msa0159410:intron | 40.0% | |
| ! | AATTACCCTCTTTAGGGAGA+GGG | - | chr1_4:29869651-29869670 | Msa0159410:intron | 40.0% |
| TAAAGCTCTTGAGGATGAAG+AGG | - | chr1_4:29869747-29869766 | Msa0159410:intron | 40.0% | |
| !!! | GTCTTTTGGAGTAGAAGTTG+CGG | + | chr1_4:29869773-29869792 | None:intergenic | 40.0% |
| AACTTCTACTCCAAAAGACG+AGG | - | chr1_4:29869774-29869793 | Msa0159410:intron | 40.0% | |
| CAAATTCTCTCCTCAATGCA+AGG | - | chr1_4:29869840-29869859 | Msa0159410:intron | 40.0% | |
| TCAGTGAAATCGGAGATGTT+TGG | - | chr1_4:29870002-29870021 | Msa0159410:intron | 40.0% | |
| ! | TAGCAAGCCTTTTTCCATCA+CGG | + | chr1_4:29870051-29870070 | None:intergenic | 40.0% |
| GGGCATTAGAAGATTAGACA+AGG | + | chr1_4:29870132-29870151 | None:intergenic | 40.0% | |
| TAACTGGAGCTACTAAGTTG+TGG | - | chr1_4:29870171-29870190 | Msa0159410:intron | 40.0% | |
| ATGACAAGACATGGAGGTTA+TGG | - | chr1_4:29870423-29870442 | Msa0159410:intron | 40.0% | |
| TGACAAGACATGGAGGTTAT+GGG | - | chr1_4:29870424-29870443 | Msa0159410:intron | 40.0% | |
| GAGGAGTTACTTCTTCAAGA+AGG | - | chr1_4:29870461-29870480 | Msa0159410:intron | 40.0% | |
| !! | GGTCATAGTAGAAGTGTCTT+TGG | - | chr1_4:29870482-29870501 | Msa0159410:intron | 40.0% |
| !!! | GGTTTGGCTTTTCATCATGA+TGG | - | chr1_4:29870503-29870522 | Msa0159410:intron | 40.0% |
| ATCTTGTGGAAAAGATGCTC+TGG | - | chr1_4:29870538-29870557 | Msa0159410:intron | 40.0% | |
| GAACACTTCTATCAGTTCGA+AGG | + | chr1_4:29870577-29870596 | None:intergenic | 40.0% | |
| !! | AGAAGTGTTCTAGCACTAGA+AGG | - | chr1_4:29870587-29870606 | Msa0159410:intron | 40.0% |
| ACTAGAAGGTCATGTCAAAC+CGG | - | chr1_4:29870601-29870620 | Msa0159410:intron | 40.0% | |
| AAATTCAAGAATGGTCAGCC+TGG | + | chr1_4:29870693-29870712 | None:intergenic | 40.0% | |
| ! | GGCATCAGTTTTTCTCCTAA+TGG | - | chr1_4:29870728-29870747 | Msa0159410:intron | 40.0% |
| ACAAGTGTTATCTTCACCAC+CGG | + | chr1_4:29870768-29870787 | None:intergenic | 40.0% | |
| ! | TAATTTAGAGTGAGCGGGAA+TGG | + | chr1_4:29870828-29870847 | None:intergenic | 40.0% |
| ACAAGTCAAATTTGAGCCAC+AGG | - | chr1_4:29870853-29870872 | Msa0159410:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTA+AGG | - | chr1_4:29871012-29871031 | Msa0159410:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | - | chr1_4:29871013-29871032 | Msa0159410:intron | 40.0% |
| !! | GTTTCTTAACTTGTGCCCTT+AGG | + | chr1_4:29871031-29871050 | None:intergenic | 40.0% |
| ! | TGTTCTAAACTTGTGCCTCA+AGG | - | chr1_4:29871151-29871170 | Msa0159410:intron | 40.0% |
| ! | GTTCTAAACTTGTGCCTCAA+GGG | - | chr1_4:29871152-29871171 | Msa0159410:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+AGG | + | chr1_4:29871169-29871188 | None:intergenic | 40.0% |
| !! | TGCTCTTTTGGCTGAGTATA+AGG | - | chr1_4:29871385-29871404 | Msa0159410:three_prime_UTR | 40.0% |
| CATAGAAAGAGCTCGTAACA+TGG | - | chr1_4:29871422-29871441 | Msa0159410:three_prime_UTR | 40.0% | |
| ! | TCTCCATTTTCCAAAAGGAG+TGG | + | chr1_4:29871853-29871872 | None:intergenic | 40.0% |
| AATCCTTACCCCTTAGTCTA+CGG | - | chr1_4:29871874-29871893 | Msa0159410:three_prime_UTR | 40.0% | |
| AGTACATGAAAAACTTCCCC+TGG | + | chr1_4:29871966-29871985 | None:intergenic | 40.0% | |
| TACAAGTGAAGGCAGATCAT+AGG | - | chr1_4:29872094-29872113 | Msa0159410:CDS | 40.0% | |
| AGATCATAGGTGAGGTCAAA+TGG | - | chr1_4:29872107-29872126 | Msa0159410:CDS | 40.0% | |
| TGAAGATAGAGTTAGTTCCG+TGG | + | chr1_4:29872254-29872273 | None:intergenic | 40.0% | |
| AGCATGTGAAGAGACTATCA+GGG | + | chr1_4:29872279-29872298 | None:intergenic | 40.0% | |
| AAGCATGTGAAGAGACTATC+AGG | + | chr1_4:29872280-29872299 | None:intergenic | 40.0% | |
| TCTTCACATGCTTAAAGTCC+CGG | - | chr1_4:29872287-29872306 | Msa0159410:intron | 40.0% | |
| TTTGGCTACACTGCATAATC+TGG | + | chr1_4:29872487-29872506 | None:intergenic | 40.0% | |
| ! | GCTTCAACCTAGAACTTGTT+TGG | - | chr1_4:29872621-29872640 | Msa0159410:five_prime_UTR | 40.0% |
| ATGTTTCGAAAACAGGCTCA+AGG | + | chr1_4:29872663-29872682 | None:intergenic | 40.0% | |
| GTATGTATTCTGCAGATGGT+GGG | - | chr1_4:29872913-29872932 | Msa0159410:intron | 40.0% | |
| AACATCCATAGTATGCTCAC+TGG | + | chr1_4:29872994-29873013 | None:intergenic | 40.0% | |
| CTAGCTACAGAATCAAGCTA+AGG | + | chr1_4:29873100-29873119 | None:intergenic | 40.0% | |
| CAGAAGAGAGTAGACTAGTG+AGG | - | chr1_4:29869515-29869534 | Msa0159410:intron | 45.0% | |
| CAATGCAAGACCTCATGATG+AGG | - | chr1_4:29869554-29869573 | Msa0159410:intron | 45.0% | |
| ! | CCTCACTGTCATGTCATTTG+TGG | + | chr1_4:29869605-29869624 | None:intergenic | 45.0% |
| CCACAAATGACATGACAGTG+AGG | - | chr1_4:29869602-29869621 | Msa0159410:intron | 45.0% | |
| CTCACCAAGATGGTGAAGAT+GGG | + | chr1_4:29869629-29869648 | None:intergenic | 45.0% | |
| GTGAGCCAATTACCCTCTTT+AGG | - | chr1_4:29869644-29869663 | Msa0159410:intron | 45.0% | |
| CTCTCCCTAAAGAGGGTAAT+TGG | + | chr1_4:29869652-29869671 | None:intergenic | 45.0% | |
| ! | CAATTACCCTCTTTAGGGAG+AGG | - | chr1_4:29869650-29869669 | Msa0159410:intron | 45.0% |
| AGACAGGTTGCGGATGATTA+TGG | - | chr1_4:29869687-29869706 | Msa0159410:intron | 45.0% | |
| AGATGATCCGGATGAAGATG+TGG | - | chr1_4:29869928-29869947 | Msa0159410:intron | 45.0% | |
| TCTGCATCCACATCTTCATC+CGG | + | chr1_4:29869938-29869957 | None:intergenic | 45.0% | |
| TGAAGATGTGGATGCAGAGA+TGG | - | chr1_4:29869940-29869959 | Msa0159410:intron | 45.0% | |
| ATGTGGATGCAGAGATGGAT+TGG | - | chr1_4:29869945-29869964 | Msa0159410:intron | 45.0% | |
| !! | GATGGATTGGACATTGAAGC+AGG | - | chr1_4:29869958-29869977 | Msa0159410:intron | 45.0% |
| ! | CATTCTCCCGTGATGGAAAA+AGG | - | chr1_4:29870041-29870060 | Msa0159410:intron | 45.0% |
| ! | AGCAAGCCTTTTTCCATCAC+GGG | + | chr1_4:29870050-29870069 | None:intergenic | 45.0% |
| !! | ATGGAAAAAGGCTTGCTACC+TGG | - | chr1_4:29870053-29870072 | Msa0159410:intron | 45.0% |
| !! | CATCCATCACGGAAGTACTT+GGG | - | chr1_4:29870389-29870408 | Msa0159410:intron | 45.0% |
| AGGTTATGGGACGTTGAAAC+AGG | - | chr1_4:29870437-29870456 | Msa0159410:intron | 45.0% | |
| GTCAGCCTGGCAAAATACTA+TGG | + | chr1_4:29870680-29870699 | None:intergenic | 45.0% | |
| AGTCAAATTTGAGCCACAGG+AGG | - | chr1_4:29870856-29870875 | Msa0159410:intron | 45.0% | |
| GTCAAATTTGAGCCACAGGA+GGG | - | chr1_4:29870857-29870876 | Msa0159410:intron | 45.0% | |
| ACCAAAAAGTAACCCTCCTG+TGG | + | chr1_4:29870872-29870891 | None:intergenic | 45.0% | |
| AAAGAGCTCGTAACATGGGT+TGG | - | chr1_4:29871427-29871446 | Msa0159410:three_prime_UTR | 45.0% | |
| !! | ACATGGGTTGGTCTAAGTTG+TGG | - | chr1_4:29871439-29871458 | Msa0159410:three_prime_UTR | 45.0% |
| ! | TGGCATGCTAGAGACTTTTC+TGG | - | chr1_4:29871697-29871716 | Msa0159410:intron | 45.0% |
| GACTAGGCCAAAACCCATTT+AGG | + | chr1_4:29871746-29871765 | None:intergenic | 45.0% | |
| ACATACAAATTGGGGGGACT+AGG | + | chr1_4:29871762-29871781 | None:intergenic | 45.0% | |
| TGGAAAGCTCCATCAGTGTT+AGG | + | chr1_4:29871833-29871852 | None:intergenic | 45.0% | |
| ! | ATGGAGCTTTCCACTCCTTT+TGG | - | chr1_4:29871840-29871859 | Msa0159410:three_prime_UTR | 45.0% |
| ACCTTCATGCCGTAGACTAA+GGG | + | chr1_4:29871886-29871905 | None:intergenic | 45.0% | |
| TACCTTCATGCCGTAGACTA+AGG | + | chr1_4:29871887-29871906 | None:intergenic | 45.0% | |
| ACTACCTCCAAGAACATCCA+CGG | - | chr1_4:29872234-29872253 | Msa0159410:intron | 45.0% | |
| GTTAGTTCCGTGGATGTTCT+TGG | + | chr1_4:29872244-29872263 | None:intergenic | 45.0% | |
| TGCAGTGTAGCCAAAGTGAA+AGG | - | chr1_4:29872492-29872511 | Msa0159410:CDS | 45.0% | |
| GGTATGTATTCTGCAGATGG+TGG | - | chr1_4:29872912-29872931 | Msa0159410:intron | 45.0% | |
| ! | CAGCTTTATCGTGCGATCAT+GGG | + | chr1_4:29872955-29872974 | None:intergenic | 45.0% |
| ! | ACAGCTTTATCGTGCGATCA+TGG | + | chr1_4:29872956-29872975 | None:intergenic | 45.0% |
| ATGATCGCACGATAAAGCTG+TGG | - | chr1_4:29872955-29872974 | Msa0159410:intron | 45.0% | |
| ! | TTGATTCTGTAGCTAGCCTG+TGG | - | chr1_4:29873104-29873123 | Msa0159410:intron | 45.0% |
| !! | TAATTTCTTTATAATTTATA+AGG | - | chr1_4:29872204-29872223 | Msa0159410:intron | 5.0% |
| AGAGTAGACTAGTGAGGGAG+CGG | - | chr1_4:29869521-29869540 | Msa0159410:intron | 50.0% | |
| TGCAAGACCTCATGATGAGG+AGG | - | chr1_4:29869557-29869576 | Msa0159410:intron | 50.0% | |
| GCTCACCAAGATGGTGAAGA+TGG | + | chr1_4:29869630-29869649 | None:intergenic | 50.0% | |
| ! | GGGTAATTGGCTCACCAAGA+TGG | + | chr1_4:29869639-29869658 | None:intergenic | 50.0% |
| CATCTCCCTCTCCCTAAAGA+GGG | + | chr1_4:29869659-29869678 | None:intergenic | 50.0% | |
| GCGGATGATTATGGCAAAGC+TGG | - | chr1_4:29869696-29869715 | Msa0159410:intron | 50.0% | |
| ATGGCAAAGCTGGATGCTGA+TGG | - | chr1_4:29869706-29869725 | Msa0159410:intron | 50.0% | |
| TACTCCAAAAGACGAGGCTG+AGG | - | chr1_4:29869780-29869799 | Msa0159410:intron | 50.0% | |
| ! | TCATCCTCAGCCTCGTCTTT+TGG | + | chr1_4:29869787-29869806 | None:intergenic | 50.0% |
| CGGATCATCTCTTCTTCTCC+GGG | + | chr1_4:29869918-29869937 | None:intergenic | 50.0% | |
| CCGGATCATCTCTTCTTCTC+CGG | + | chr1_4:29869919-29869938 | None:intergenic | 50.0% | |
| CCGGAGAAGAAGAGATGATC+CGG | - | chr1_4:29869916-29869935 | Msa0159410:intron | 50.0% | |
| GGAGATGTTTGGCGACTTAC+TGG | - | chr1_4:29870013-29870032 | Msa0159410:intron | 50.0% | |
| TGCAACATCAGTAGCACGCT+CGG | + | chr1_4:29870240-29870259 | None:intergenic | 50.0% | |
| GCATTGCCTTCCATCCATCA+CGG | - | chr1_4:29870378-29870397 | Msa0159410:intron | 50.0% | |
| !! | GTACTTCCGTGATGGATGGA+AGG | + | chr1_4:29870387-29870406 | None:intergenic | 50.0% |
| ! | CCAAGTACTTCCGTGATGGA+TGG | + | chr1_4:29870391-29870410 | None:intergenic | 50.0% |
| !! | CCATCCATCACGGAAGTACT+TGG | - | chr1_4:29870388-29870407 | Msa0159410:intron | 50.0% |
| CTGCTAGCGATGACAAGACA+TGG | - | chr1_4:29870414-29870433 | Msa0159410:intron | 50.0% | |
| CTAGCGATGACAAGACATGG+AGG | - | chr1_4:29870417-29870436 | Msa0159410:intron | 50.0% | |
| ATGGGACGTTGAAACAGGAG+AGG | - | chr1_4:29870442-29870461 | Msa0159410:intron | 50.0% | |
| GGATCGTTAGCAGCATCTTG+TGG | - | chr1_4:29870524-29870543 | Msa0159410:intron | 50.0% | |
| GGATATTATTTGGCCACCGG+TGG | - | chr1_4:29870749-29870768 | Msa0159410:intron | 50.0% | |
| AGTGTTATCTTCACCACCGG+TGG | + | chr1_4:29870765-29870784 | None:intergenic | 50.0% | |
| ! | CTTGTCGCATTTGGGACTTG+AGG | - | chr1_4:29870783-29870802 | Msa0159410:intron | 50.0% |
| !!! | GCCACAGGAGGGTTACTTTT+TGG | - | chr1_4:29870868-29870887 | Msa0159410:intron | 50.0% |
| CTTGGCTGTCATGTCATACG+AGG | + | chr1_4:29870900-29870919 | None:intergenic | 50.0% | |
| CTCGTATGACATGACAGCCA+AGG | - | chr1_4:29870898-29870917 | Msa0159410:intron | 50.0% | |
| ! | TGGTCACTGCAGTGCTCTTT+TGG | - | chr1_4:29871373-29871392 | Msa0159410:three_prime_UTR | 50.0% |
| ATGCCGTAGACTAAGGGGTA+AGG | + | chr1_4:29871880-29871899 | None:intergenic | 50.0% | |
| CCTTCATGCCGTAGACTAAG+GGG | + | chr1_4:29871885-29871904 | None:intergenic | 50.0% | |
| GTGAAGGCAGATCATAGGTG+AGG | - | chr1_4:29872099-29872118 | Msa0159410:CDS | 50.0% | |
| AGTTCCGTGGATGTTCTTGG+AGG | + | chr1_4:29872241-29872260 | None:intergenic | 50.0% | |
| ATGCGCCTGTTGTTGCGTTT+GGG | - | chr1_4:29872744-29872763 | Msa0159410:five_prime_UTR | 50.0% | |
| CAGTTCCCAAACGCAACAAC+AGG | + | chr1_4:29872752-29872771 | None:intergenic | 50.0% | |
| ACGATAAAGCTGTGGTCCAG+CGG | - | chr1_4:29872963-29872982 | Msa0159410:intron | 50.0% | |
| ATGCTCACTGGTAAAACCGC+TGG | + | chr1_4:29872982-29873001 | None:intergenic | 50.0% | |
| AGGGCCCATCTTCACCATCT+TGG | - | chr1_4:29869622-29869641 | Msa0159410:intron | 55.0% | |
| CCATCTCCCTCTCCCTAAAG+AGG | + | chr1_4:29869660-29869679 | None:intergenic | 55.0% | |
| ! | CCTCTTTAGGGAGAGGGAGA+TGG | - | chr1_4:29869657-29869676 | Msa0159410:intron | 55.0% |
| TGGAGAGACGAGACAGGTTG+CGG | - | chr1_4:29869677-29869696 | Msa0159410:intron | 55.0% | |
| ! | GCTGGATGCTGATGGACAGT+TGG | - | chr1_4:29869714-29869733 | Msa0159410:intron | 55.0% |
| GGTTGCTCATTCTCCCGTGA+TGG | - | chr1_4:29870034-29870053 | Msa0159410:intron | 55.0% | |
| TAGCAACTGCCTCTGCTGAC+CGG | - | chr1_4:29870285-29870304 | Msa0159410:intron | 55.0% | |
| TGGAAGGCAATGCGTGCAAG+AGG | + | chr1_4:29870371-29870390 | None:intergenic | 55.0% | |
| GTGCCCAAGTACTTCCGTGA+TGG | + | chr1_4:29870395-29870414 | None:intergenic | 55.0% | |
| ! | AAGATGCTCTGGCTCGTGTG+TGG | - | chr1_4:29870549-29870568 | Msa0159410:intron | 55.0% |
| ! | AGATGCTCTGGCTCGTGTGT+GGG | - | chr1_4:29870550-29870569 | Msa0159410:intron | 55.0% |
| GTGAGCGGGAATGGTGTACA+AGG | + | chr1_4:29870819-29870838 | None:intergenic | 55.0% | |
| CCCCTTAGTCTACGGCATGA+AGG | - | chr1_4:29871882-29871901 | Msa0159410:three_prime_UTR | 55.0% | |
| CAAACGCAACAACAGGCGCA+TGG | + | chr1_4:29872745-29872764 | None:intergenic | 55.0% | |
| CATGCGCCTGTTGTTGCGTT+TGG | - | chr1_4:29872743-29872762 | Msa0159410:five_prime_UTR | 55.0% | |
| TAGACTAGTGAGGGAGCGGC+AGG | - | chr1_4:29869525-29869544 | Msa0159410:intron | 60.0% | |
| CAGCACGCCTCCTCATCATG+AGG | + | chr1_4:29869567-29869586 | None:intergenic | 60.0% | |
| GGGAGATGGAGAGACGAGAC+AGG | - | chr1_4:29869671-29869690 | Msa0159410:intron | 60.0% | |
| CATTGCGTATCCAACGCGCC+CGG | - | chr1_4:29869897-29869916 | Msa0159410:intron | 60.0% | |
| !! | GTTTGCTGTCCGGTCAGCAG+AGG | + | chr1_4:29870297-29870316 | None:intergenic | 60.0% |
| CTCTTCTTCTCCGGGCGCGT+TGG | + | chr1_4:29869910-29869929 | None:intergenic | 65.0% | |
| !! | ACGCTCGGTGTGCCCCTTGA+AGG | + | chr1_4:29870225-29870244 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 29869072 | 29873290 | 29869072 | ID=Msa0159410;Name=Msa0159410 |
| chr1_4 | mRNA | 29869072 | 29873290 | 29869072 | ID=Msa0159410-mRNA-1;Parent=Msa0159410;Name=Msa0159410-mRNA-1;_AED=0.09;_eAED=0.09;_QI=330|1|1|1|0.5|0|5|945|156 |
| chr1_4 | exon | 29869072 | 29869445 | 29869072 | ID=Msa0159410-mRNA-1:exon:9616;Parent=Msa0159410-mRNA-1 |
| chr1_4 | exon | 29871370 | 29871640 | 29871370 | ID=Msa0159410-mRNA-1:exon:9615;Parent=Msa0159410-mRNA-1 |
| chr1_4 | exon | 29871740 | 29872196 | 29871740 | ID=Msa0159410-mRNA-1:exon:9614;Parent=Msa0159410-mRNA-1 |
| chr1_4 | exon | 29872288 | 29872889 | 29872288 | ID=Msa0159410-mRNA-1:exon:9613;Parent=Msa0159410-mRNA-1 |
| chr1_4 | exon | 29873249 | 29873290 | 29873249 | ID=Msa0159410-mRNA-1:exon:9612;Parent=Msa0159410-mRNA-1 |
| chr1_4 | five_prime_UTR | 29873249 | 29873290 | 29873249 | ID=Msa0159410-mRNA-1:five_prime_utr;Parent=Msa0159410-mRNA-1 |
| chr1_4 | five_prime_UTR | 29872602 | 29872889 | 29872602 | ID=Msa0159410-mRNA-1:five_prime_utr;Parent=Msa0159410-mRNA-1 |
| chr1_4 | CDS | 29872288 | 29872601 | 29872288 | ID=Msa0159410-mRNA-1:cds;Parent=Msa0159410-mRNA-1 |
| chr1_4 | CDS | 29872040 | 29872196 | 29872040 | ID=Msa0159410-mRNA-1:cds;Parent=Msa0159410-mRNA-1 |
| chr1_4 | three_prime_UTR | 29871740 | 29872039 | 29871740 | ID=Msa0159410-mRNA-1:three_prime_utr;Parent=Msa0159410-mRNA-1 |
| chr1_4 | three_prime_UTR | 29871370 | 29871640 | 29871370 | ID=Msa0159410-mRNA-1:three_prime_utr;Parent=Msa0159410-mRNA-1 |
| chr1_4 | three_prime_UTR | 29869072 | 29869445 | 29869072 | ID=Msa0159410-mRNA-1:three_prime_utr;Parent=Msa0159410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
