AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451620 MtrunA17_Chr3g0129901 98.765 162 2 0 1 162 1 162 3.94e-117 328
Msa1451620 MtrunA17_Chr8g0390801 95.062 162 8 0 1 162 1 162 1.32e-113 318
Msa1451620 MtrunA17_Chr3g0108681 44.144 111 62 0 3 113 104 214 2.50e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451620 AT5G64650.1 83.851 161 25 1 1 161 1 160 9.13e-98 279
Msa1451620 AT5G09770.1 83.851 161 25 1 1 161 1 160 2.51e-97 278
Msa1451620 AT3G54210.1 45.370 108 59 0 6 113 104 211 3.29e-28 104

Find 71 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTGAGCTTTGTCATTT+TGG 0.140982 tig0033518:-22572 None:intergenic
AATTCAGGCATCTCAAACTA+TGG 0.167804 tig0033518:-26166 None:intergenic
ACGACAGTAATTGCCAGTTC+AGG 0.325348 tig0033518:-26377 None:intergenic
TAGAAGGCTTGCGGATAATA+TGG 0.358643 tig0033518:+22900 Msa1451620:CDS
AGCAAAGACAAACAAAATTC+AGG 0.373416 tig0033518:-26181 None:intergenic
TTTAGGCTAAGGAGGTTAGA+AGG 0.388038 tig0033518:+22884 Msa1451620:intron
TCACAAGCTGTTTACAGAAC+TGG 0.397878 tig0033518:+25531 Msa1451620:CDS
TAGAACCATGGTCTCGCAAT+TGG 0.405067 tig0033518:+22735 Msa1451620:intron
CTCTGCGGTGGTTGAGGAGT+TGG 0.413679 tig0033518:-26000 None:intergenic
GGTGCTCTCTGCGGTGGTTG+AGG 0.424189 tig0033518:-26006 None:intergenic
AAGAGAGATTTACTCAATAT+AGG 0.440103 tig0033518:-25721 None:intergenic
CCTGTGAGAGTAATTGAATC+AGG 0.447262 tig0033518:+22408 Msa1451620:five_prime_UTR
CGACAGTAATTGCCAGTTCA+GGG 0.449308 tig0033518:-26376 None:intergenic
TTATACATTCGCCATTGTAA+TGG 0.471384 tig0033518:-26410 None:intergenic
ACAGTGTAAGAAAGAAAGCT+AGG 0.473644 tig0033518:+22525 Msa1451620:five_prime_UTR
TTAACCTGAGCATGGATAAC+CGG 0.473739 tig0033518:-22615 None:intergenic
AACAAGACTGGTTAGATTGT+GGG 0.477850 tig0033518:+26432 Msa1451620:three_prime_UTR
AGGTTGGAAAGAAGAGAAGA+AGG 0.478059 tig0033518:-22376 None:intergenic
TCACAGGGTGCTTGTGAGGT+TGG 0.483232 tig0033518:-22392 None:intergenic
ATTCAGGCATCTCAAACTAT+GGG 0.488394 tig0033518:-26165 None:intergenic
GAGATCGTGTCCAGGGATCA+AGG 0.491136 tig0033518:-26029 None:intergenic
CCTGATTCAATTACTCTCAC+AGG 0.493849 tig0033518:-22408 None:intergenic
ATTGAAACTGTAATCGATGC+GGG 0.494940 tig0033518:+26291 Msa1451620:three_prime_UTR
TGCGGTGGTTGAGGAGTTGG+TGG 0.501694 tig0033518:-25997 None:intergenic
GGAAAGAAGAGAAGAAGGAA+AGG 0.504578 tig0033518:-22371 None:intergenic
TTTGGGAGGCGCAAACTGCC+TGG 0.505684 tig0033518:-26058 None:intergenic
TCAAGGGGTGCTCTCTGCGG+TGG 0.506263 tig0033518:-26012 None:intergenic
AGAGAGCACCCCTTGATCCC+TGG 0.506695 tig0033518:+26019 Msa1451620:CDS
AGCACGCCTTGCAGCACATA+CGG 0.513486 tig0033518:-25479 None:intergenic
TATGGTACAGCTTGGTAAAG+AGG 0.517654 tig0033518:+22918 Msa1451620:CDS
GGACACGATCTCGTCTTACC+AGG 0.528819 tig0033518:+26040 Msa1451620:CDS
AAACAAGACTGGTTAGATTG+TGG 0.531469 tig0033518:+26431 Msa1451620:three_prime_UTR
GGTAAGACGAGATCGTGTCC+AGG 0.534527 tig0033518:-26037 None:intergenic
CTGTCTACTACTATTACTAC+AGG 0.543208 tig0033518:+26248 Msa1451620:three_prime_UTR
GGCGAATGTATAAACAAGAC+TGG 0.547097 tig0033518:+26420 Msa1451620:three_prime_UTR
ACACTGTGCTATGCACAAAA+CGG 0.550922 tig0033518:-22509 None:intergenic
CTACCAAAATGACAAAGCTC+AGG 0.553568 tig0033518:+22569 Msa1451620:exon
ATTTACTCAATATAGGCCAT+TGG 0.558368 tig0033518:-25714 None:intergenic
CTGATTCAATTACTCTCACA+GGG 0.562821 tig0033518:-22407 None:intergenic
CTCACCGGTTATCCATGCTC+AGG 0.565167 tig0033518:+22611 Msa1451620:CDS
CAGTGTAAGAAAGAAAGCTA+GGG 0.568142 tig0033518:+22526 Msa1451620:five_prime_UTR
AGATCGTGTCCAGGGATCAA+GGG 0.568372 tig0033518:-26028 None:intergenic
ACTCTCACAGGGTGCTTGTG+AGG 0.575600 tig0033518:-22396 None:intergenic
AGTTGGTGATGCTGCACCAA+TGG 0.577706 tig0033518:+25698 Msa1451620:CDS
TGATTCATTCAAATGTATTG+CGG 0.579092 tig0033518:+26127 Msa1451620:three_prime_UTR
GGATCAAGGGGTGCTCTCTG+CGG 0.581904 tig0033518:-26015 None:intergenic
GCGGATAATATGGTACAGCT+TGG 0.582534 tig0033518:+22910 Msa1451620:CDS
GTGGATACACTAGGGTGCTA+CGG 0.583066 tig0033518:+25664 Msa1451620:CDS
CATTGAAACTACTATTACCA+AGG 0.585744 tig0033518:+22771 Msa1451620:CDS
ATCGAACTGGTGGATACACT+AGG 0.599188 tig0033518:+25655 Msa1451620:CDS
CTACGGACTCGCATTCGAGT+TGG 0.599565 tig0033518:+25681 Msa1451620:CDS
ACAAGACTGGTTAGATTGTG+GGG 0.599567 tig0033518:+26433 Msa1451620:three_prime_UTR
GTGTTGTGCAGGGATCGAAC+TGG 0.602705 tig0033518:+25642 Msa1451620:intron
AGGGATCCGTATGTGCTGCA+AGG 0.603781 tig0033518:+25473 Msa1451620:intron
AAAGCATGTTAACCTGAGCA+TGG 0.605726 tig0033518:-22623 None:intergenic
GCAGTTTGCGCCTCCCAAAG+TGG 0.610571 tig0033518:+26062 Msa1451620:CDS
TTCAGGCATCTCAAACTATG+GGG 0.611658 tig0033518:-26164 None:intergenic
CCTCACCAATTGCGAGACCA+TGG 0.612029 tig0033518:-22740 None:intergenic
CCATGGTCTCGCAATTGGTG+AGG 0.620210 tig0033518:+22740 Msa1451620:CDS
TTGATCGCGATAATGAGCTT+AGG 0.622821 tig0033518:+25965 Msa1451620:CDS
GATTGAAACTGTAATCGATG+CGG 0.625614 tig0033518:+26290 Msa1451620:three_prime_UTR
GTAAGACGAGATCGTGTCCA+GGG 0.629636 tig0033518:-26036 None:intergenic
TTGTGCAGGGATCGAACTGG+TGG 0.637626 tig0033518:+25645 Msa1451620:intron
GATCGTGTCCAGGGATCAAG+GGG 0.638632 tig0033518:-26027 None:intergenic
TAAGGAGGTTAGAAGGCTTG+CGG 0.643881 tig0033518:+22891 Msa1451620:CDS
TAATGTCAAAACCATTACAA+TGG 0.644813 tig0033518:+26399 Msa1451620:three_prime_UTR
TCAATCGAGATACGTCTCAC+CGG 0.647896 tig0033518:+22596 Msa1451620:CDS
GAGAAGAAGGAAAGGAAACG+CGG 0.653078 tig0033518:-22363 None:intergenic
TCGAACTGGTGGATACACTA+GGG 0.666236 tig0033518:+25656 Msa1451620:CDS
CGTGCTGCTAGTTTCGTGCG+AGG 0.668394 tig0033518:+25496 Msa1451620:CDS
TCAGGCATCTCAAACTATGG+GGG 0.671828 tig0033518:-26163 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATAAATAAAAAAAA+AGG - tig0033518:22667-22686 None:intergenic 0.0%
!!! TTATAAATTTTAATTTTTTT+GGG - tig0033518:24748-24767 None:intergenic 0.0%
!!! TTTATAAATTTTAATTTTTT+TGG - tig0033518:24749-24768 None:intergenic 0.0%
!! ATAAATAAAAAAAAAGGAAT+TGG - tig0033518:22661-22680 None:intergenic 10.0%
!!! AAATTTTATTTATATTACCT+TGG - tig0033518:22791-22810 None:intergenic 10.0%
!!! AATATTCATTTTTTTCAATT+AGG - tig0033518:23790-23809 None:intergenic 10.0%
!!! ATACTTTTTTTTTTTTTGAA+TGG - tig0033518:24450-24469 None:intergenic 10.0%
!!! AAAAAAAAAAAGTATATTTG+AGG + tig0033518:24455-24474 Msa1451620:intron 10.0%
!!! AAAAAAAAAAGTATATTTGA+GGG + tig0033518:24456-24475 Msa1451620:intron 10.0%
!!! AATTTTTTGAAAATTTATTG+GGG - tig0033518:24690-24709 None:intergenic 10.0%
!!! CAATTTTTTGAAAATTTATT+GGG - tig0033518:24691-24710 None:intergenic 10.0%
!!! TTATTTTTTATTTAGAACCA+TGG + tig0033518:22723-22742 Msa1451620:intron 15.0%
!!! TTTTGAAATTCTTAACTTTT+AGG - tig0033518:24599-24618 None:intergenic 15.0%
!!! ATTTTTCAAATTTTACACTT+TGG + tig0033518:24634-24653 Msa1451620:intron 15.0%
!!! GCAATTTTTTGAAAATTTAT+TGG - tig0033518:24692-24711 None:intergenic 15.0%
!! AAATGAGAAAATTGAAATTA+GGG - tig0033518:24723-24742 None:intergenic 15.0%
!!! AATTTTTCAATACTTTTGTT+TGG - tig0033518:24815-24834 None:intergenic 15.0%
!!! TTAAAAGAATTTAGAATTCT+AGG - tig0033518:24867-24886 None:intergenic 15.0%
!! AAATAACAATTAACTTAATC+CGG + tig0033518:25028-25047 Msa1451620:intron 15.0%
!! AATAAAAAAAAAGGAATTGG+AGG - tig0033518:22658-22677 None:intergenic 20.0%
!! TTTATCCAAATTCTGAATTA+TGG + tig0033518:22683-22702 Msa1451620:intron 20.0%
!! TTATCCAAATTCTGAATTAT+GGG + tig0033518:22684-22703 Msa1451620:intron 20.0%
!! TGTGAATTTCAATTAAAGTT+TGG + tig0033518:22845-22864 Msa1451620:intron 20.0%
!!! AAACAATATTCTTTTCAAAC+TGG + tig0033518:23199-23218 Msa1451620:intron 20.0%
!! TTTATGAAATAGTTGTTGAT+AGG + tig0033518:23439-23458 Msa1451620:intron 20.0%
!! ATAAGCTTGTATGATTAAAA+AGG + tig0033518:23629-23648 Msa1451620:intron 20.0%
!!! TTTTGATTAGATAATTCAAG+TGG + tig0033518:23715-23734 Msa1451620:intron 20.0%
!! AGTTCAAAATCTAACAAAAA+TGG - tig0033518:24208-24227 None:intergenic 20.0%
!!! TTGATGAATTTTCAAAATGA+TGG + tig0033518:24522-24541 Msa1451620:intron 20.0%
!!! TGCAAATTTTGGAAAATTTA+TGG - tig0033518:24661-24680 None:intergenic 20.0%
!! AATGAGAAAATTGAAATTAG+GGG - tig0033518:24722-24741 None:intergenic 20.0%
!! CAAATGAGAAAATTGAAATT+AGG - tig0033518:24724-24743 None:intergenic 20.0%
!!! CTAATTTCAATTTTCTCATT+TGG + tig0033518:24722-24741 Msa1451620:intron 20.0%
!!! AATTTCATAGTCATCATTTT+TGG - tig0033518:24778-24797 None:intergenic 20.0%
!! AATGCTTGAAATATAATCAA+TGG + tig0033518:24979-24998 Msa1451620:intron 20.0%
!! AATAACAATTAACTTAATCC+GGG + tig0033518:25029-25048 Msa1451620:intron 20.0%
! GAATTTCAATTAAAGTTTGG+TGG + tig0033518:22848-22867 Msa1451620:intron 25.0%
!!! GTGGTTGTAATTTTGATTTT+AGG + tig0033518:22867-22886 Msa1451620:intron 25.0%
!!! GTAATTTTGATTTTAGGCTA+AGG + tig0033518:22873-22892 Msa1451620:intron 25.0%
!! TAGTTTAACTATTTTGCATC+TGG + tig0033518:22983-23002 Msa1451620:intron 25.0%
!! AGTTTAACTATTTTGCATCT+GGG + tig0033518:22984-23003 Msa1451620:intron 25.0%
!!! AGTGCATTTTTAGTTTCAAA+AGG + tig0033518:23051-23070 Msa1451620:intron 25.0%
!!! GACATTTTTTAAACCTCTTT+CGG - tig0033518:23233-23252 None:intergenic 25.0%
! TTACTCAACATTTATCTTCA+GGG - tig0033518:23258-23277 None:intergenic 25.0%
! TTTACTCAACATTTATCTTC+AGG - tig0033518:23259-23278 None:intergenic 25.0%
! ATAAATGTTGAGTAAATCAG+TGG + tig0033518:23263-23282 Msa1451620:intron 25.0%
! CTAAACTATCTGTTGAAAAT+CGG + tig0033518:23359-23378 Msa1451620:intron 25.0%
! AATATATTCCTTCAGGAAAA+CGG - tig0033518:23572-23591 None:intergenic 25.0%
!! AAGGAATATATTTTGTCTGT+TGG + tig0033518:23580-23599 Msa1451620:intron 25.0%
! TCAAAATGACAATTACCAAA+CGG - tig0033518:23657-23676 None:intergenic 25.0%
!!! TTTTTTCAATTAGGATTGCA+GGG - tig0033518:23781-23800 None:intergenic 25.0%
!!! TTTTTTTCAATTAGGATTGC+AGG - tig0033518:23782-23801 None:intergenic 25.0%
! TAGATTATATCCTTTCTCTT+TGG + tig0033518:24142-24161 Msa1451620:intron 25.0%
! AGATTATATCCTTTCTCTTT+GGG + tig0033518:24143-24162 Msa1451620:intron 25.0%
! ATAAAATATCCCAAAGAGAA+AGG - tig0033518:24155-24174 None:intergenic 25.0%
! TTGGTTATTTGATTACTTTC+AGG + tig0033518:24285-24304 Msa1451620:intron 25.0%
!!! TTTCAATACTTTTGTTTGGA+TGG - tig0033518:24811-24830 None:intergenic 25.0%
! ATAACAATTAACTTAATCCG+GGG + tig0033518:25030-25049 Msa1451620:intron 25.0%
! ATTTAACTATTAGAATTCCC+CGG - tig0033518:25050-25069 None:intergenic 25.0%
! AGGTAATTCAGTTTACTAAA+TGG - tig0033518:25082-25101 None:intergenic 25.0%
! ATTTAGTAAACTGAATTACC+TGG + tig0033518:25081-25100 Msa1451620:intron 25.0%
! TTTAGTAAACTGAATTACCT+GGG + tig0033518:25082-25101 Msa1451620:intron 25.0%
! ATAAAAATTATCCATAGCCA+TGG - tig0033518:25350-25369 None:intergenic 25.0%
! ATCTTGAGCATATATTTGAT+AGG + tig0033518:25379-25398 Msa1451620:intron 25.0%
! AAGAGAGATTTACTCAATAT+AGG - tig0033518:25724-25743 None:intergenic 25.0%
! ACACAATAGATTAAAAAGAC+AGG - tig0033518:25853-25872 None:intergenic 25.0%
! GTTTATCCTTCAAATCATTT+AGG + tig0033518:25880-25899 Msa1451620:intron 25.0%
! TGATTCATTCAAATGTATTG+CGG + tig0033518:26127-26146 Msa1451620:three_prime_UTR 25.0%
! TAATGTCAAAACCATTACAA+TGG + tig0033518:26399-26418 Msa1451620:three_prime_UTR 25.0%
AAAAAAAGGAATTGGAGGAT+TGG - tig0033518:22653-22672 None:intergenic 30.0%
AGTACCCATAATTCAGAATT+TGG - tig0033518:22691-22710 None:intergenic 30.0%
CATTGAAACTACTATTACCA+AGG + tig0033518:22771-22790 Msa1451620:CDS 30.0%
! ATCGTAATCGTATGCATTTT+CGG + tig0033518:22812-22831 Msa1451620:intron 30.0%
!!! ATTTTGATTTTAGGCTAAGG+AGG + tig0033518:22876-22895 Msa1451620:intron 30.0%
! CTGGGTATGCAAATTTTAAA+TGG + tig0033518:23002-23021 Msa1451620:intron 30.0%
!! TTTAAATGGACTGTGAAATG+TGG + tig0033518:23016-23035 Msa1451620:intron 30.0%
! CTTCTATTGTTTCTTGTTCT+TGG + tig0033518:23080-23099 Msa1451620:intron 30.0%
CAATTAAATAACCTGGGTTA+GGG - tig0033518:23335-23354 None:intergenic 30.0%
TCAATTAAATAACCTGGGTT+AGG - tig0033518:23336-23355 None:intergenic 30.0%
AGGACTCAATTAAATAACCT+GGG - tig0033518:23341-23360 None:intergenic 30.0%
TAGGACTCAATTAAATAACC+TGG - tig0033518:23342-23361 None:intergenic 30.0%
! CGATTTTCAACAGATAGTTT+AGG - tig0033518:23361-23380 None:intergenic 30.0%
TCTCATTGATAGAACTCAAA+TGG + tig0033518:23412-23431 Msa1451620:intron 30.0%
CAAATGCTGATAAAAACTTG+TGG + tig0033518:23503-23522 Msa1451620:intron 30.0%
CAGACAAAATATATTCCTTC+AGG - tig0033518:23579-23598 None:intergenic 30.0%
CAAAATGACAATTACCAAAC+GGG - tig0033518:23656-23675 None:intergenic 30.0%
! TTATTTTCACGAGCTTATAG+TGG + tig0033518:23691-23710 Msa1451620:intron 30.0%
!! TTTTTCAATTAGGATTGCAG+GGG - tig0033518:23780-23799 None:intergenic 30.0%
! CTGATTGAATTTGAAGTGTT+TGG - tig0033518:23875-23894 None:intergenic 30.0%
CATGCTTATAAGAAAGAAGA+TGG + tig0033518:24100-24119 Msa1451620:intron 30.0%
ATAACAGAAATAGAGTGCAA+AGG - tig0033518:24265-24284 None:intergenic 30.0%
!! TGCACTCTATTTCTGTTATT+TGG + tig0033518:24266-24285 Msa1451620:intron 30.0%
TTGAGGTGAAATTCATTGTT+TGG + tig0033518:24491-24510 Msa1451620:intron 30.0%
!! AGTCATTGTTATTTGTTTGC+TGG + tig0033518:24922-24941 Msa1451620:intron 30.0%
! AAGCATTTAGATTTTCATCC+AGG - tig0033518:24966-24985 None:intergenic 30.0%
CAAATATATGCTCAAGATCA+AGG - tig0033518:25377-25396 None:intergenic 30.0%
! ATTTATCTAGCTTGACTACT+TGG + tig0033518:25420-25439 Msa1451620:intron 30.0%
AGTTTACACGATAAACTGTT+AGG + tig0033518:25453-25472 Msa1451620:intron 30.0%
GTTTACACGATAAACTGTTA+GGG + tig0033518:25454-25473 Msa1451620:intron 30.0%
ATTTACTCAATATAGGCCAT+TGG - tig0033518:25717-25736 None:intergenic 30.0%
AAGCAACCTAAATGATTTGA+AGG - tig0033518:25889-25908 None:intergenic 30.0%
!! AAAAAAATGTGCTCTGAAAC+AGG + tig0033518:25938-25957 Msa1451620:intron 30.0%
! GAATCAGATTTTTCCACTTT+GGG - tig0033518:26078-26097 None:intergenic 30.0%
! AGAATCAGATTTTTCCACTT+TGG - tig0033518:26079-26098 None:intergenic 30.0%
AGCAAAGACAAACAAAATTC+AGG - tig0033518:26184-26203 None:intergenic 30.0%
!! TTATTTTATAAATCTCCCCG+TGG + tig0033518:26203-26222 Msa1451620:three_prime_UTR 30.0%
!! TGTTTTATTATTGCAAGCCA+CGG - tig0033518:26223-26242 None:intergenic 30.0%
! TTTTTATTGTAACCCTGAAC+TGG + tig0033518:26364-26383 Msa1451620:three_prime_UTR 30.0%
TTATACATTCGCCATTGTAA+TGG - tig0033518:26413-26432 None:intergenic 30.0%
CTGATTCAATTACTCTCACA+GGG - tig0033518:22410-22429 None:intergenic 35.0%
ACAGTGTAAGAAAGAAAGCT+AGG + tig0033518:22525-22544 Msa1451620:five_prime_UTR 35.0%
CAGTGTAAGAAAGAAAGCTA+GGG + tig0033518:22526-22545 Msa1451620:five_prime_UTR 35.0%
ATACTGATGAAAAACCACCA+GGG + tig0033518:23290-23309 Msa1451620:intron 35.0%
AAACTGCATTAAATAACCCC+TGG - tig0033518:23310-23329 None:intergenic 35.0%
!!! TCATTTTGATTGCCTTGGTT+CGG + tig0033518:23464-23483 Msa1451620:intron 35.0%
ATGATTAAAAAGGACCCGTT+TGG + tig0033518:23639-23658 Msa1451620:intron 35.0%
!! AGCTAGCTTATAGTTGATAG+CGG - tig0033518:23907-23926 None:intergenic 35.0%
! GCTGATAAGCTAGCTTATAT+CGG - tig0033518:23955-23974 None:intergenic 35.0%
ACAAAGCCAAAGAACATCTA+CGG - tig0033518:23993-24012 None:intergenic 35.0%
GTGTTTCAAAAGCAGATGAA+AGG - tig0033518:24030-24049 None:intergenic 35.0%
! ATTACTTTCAGGTGCTATGA+TGG + tig0033518:24296-24315 Msa1451620:intron 35.0%
TTCTCCTCGTTAGTATATCT+CGG + tig0033518:24341-24360 Msa1451620:intron 35.0%
TTAGGTGTTCCGTATATTTG+CGG + tig0033518:24402-24421 Msa1451620:intron 35.0%
GAGGGAATTCAAATACTTTG+AGG + tig0033518:24474-24493 Msa1451620:intron 35.0%
! TGGGGTCAAATTGCAAATTT+TGG - tig0033518:24672-24691 None:intergenic 35.0%
CTTAAGTTAACGTTCTAACC+TGG + tig0033518:24945-24964 Msa1451620:intron 35.0%
AACTGTAACAAACATGCATG+TGG - tig0033518:25266-25285 None:intergenic 35.0%
!!! ATCCATAGCCATGGTTTTAT+GGG - tig0033518:25341-25360 None:intergenic 35.0%
!! TATCCATAGCCATGGTTTTA+TGG - tig0033518:25342-25361 None:intergenic 35.0%
!! CATTTAGGTTGCTTAGAATG+AGG + tig0033518:25895-25914 Msa1451620:intron 35.0%
!!! TCAGAGCACATTTTTTTGCA+AGG - tig0033518:25935-25954 None:intergenic 35.0%
ATTCAGGCATCTCAAACTAT+GGG - tig0033518:26168-26187 None:intergenic 35.0%
AATTCAGGCATCTCAAACTA+TGG - tig0033518:26169-26188 None:intergenic 35.0%
! TTTTATTATTGCAAGCCACG+GGG - tig0033518:26221-26240 None:intergenic 35.0%
!! GTTTTATTATTGCAAGCCAC+GGG - tig0033518:26222-26241 None:intergenic 35.0%
CTGTCTACTACTATTACTAC+AGG + tig0033518:26248-26267 Msa1451620:three_prime_UTR 35.0%
GATTGAAACTGTAATCGATG+CGG + tig0033518:26290-26309 Msa1451620:three_prime_UTR 35.0%
ATTGAAACTGTAATCGATGC+GGG + tig0033518:26291-26310 Msa1451620:three_prime_UTR 35.0%
! AAACAAGACTGGTTAGATTG+TGG + tig0033518:26431-26450 Msa1451620:three_prime_UTR 35.0%
! AACAAGACTGGTTAGATTGT+GGG + tig0033518:26432-26451 Msa1451620:three_prime_UTR 35.0%
GGAAAGAAGAGAAGAAGGAA+AGG - tig0033518:22374-22393 None:intergenic 40.0%
AGGTTGGAAAGAAGAGAAGA+AGG - tig0033518:22379-22398 None:intergenic 40.0%
CCTGATTCAATTACTCTCAC+AGG - tig0033518:22411-22430 None:intergenic 40.0%
CCTGTGAGAGTAATTGAATC+AGG + tig0033518:22408-22427 Msa1451620:five_prime_UTR 40.0%
ACACTGTGCTATGCACAAAA+CGG - tig0033518:22512-22531 None:intergenic 40.0%
CTACCAAAATGACAAAGCTC+AGG + tig0033518:22569-22588 Msa1451620:exon 40.0%
!! CTTCCTGAGCTTTGTCATTT+TGG - tig0033518:22575-22594 None:intergenic 40.0%
TTAACCTGAGCATGGATAAC+CGG - tig0033518:22618-22637 None:intergenic 40.0%
AAAGCATGTTAACCTGAGCA+TGG - tig0033518:22626-22645 None:intergenic 40.0%
TTTAGGCTAAGGAGGTTAGA+AGG + tig0033518:22884-22903 Msa1451620:intron 40.0%
TAGAAGGCTTGCGGATAATA+TGG + tig0033518:22900-22919 Msa1451620:CDS 40.0%
TATGGTACAGCTTGGTAAAG+AGG + tig0033518:22918-22937 Msa1451620:CDS 40.0%
! ACTGGTTTAAGTTCCGAAAG+AGG + tig0033518:23217-23236 Msa1451620:intron 40.0%
GATACTGATGAAAAACCACC+AGG + tig0033518:23289-23308 Msa1451620:intron 40.0%
TACTGATGAAAAACCACCAG+GGG + tig0033518:23291-23310 Msa1451620:intron 40.0%
!!! AGGCATCATTTTGATTGCCT+TGG + tig0033518:23459-23478 Msa1451620:intron 40.0%
TTAGGATTGCAGGGGTAAAA+TGG - tig0033518:23772-23791 None:intergenic 40.0%
AAGCAGATGAAAGGTGATGA+AGG - tig0033518:24021-24040 None:intergenic 40.0%
! GACTACATGTTTTGTGAGAG+TGG - tig0033518:24068-24087 None:intergenic 40.0%
TAACCCCTTAAAACCTCCTA+TGG - tig0033518:24385-24404 None:intergenic 40.0%
!!! ATAGGAGGTTTTAAGGGGTT+AGG + tig0033518:24384-24403 Msa1451620:intron 40.0%
TGGCAAATTTATTCTCGACG+AGG - tig0033518:24430-24449 None:intergenic 40.0%
ACTTCATCCAAACACACTCT+TGG + tig0033518:24898-24917 Msa1451620:intron 40.0%
CTTCATCCAAACACACTCTT+GGG + tig0033518:24899-24918 Msa1451620:intron 40.0%
ATTACCTGGGCTTCATAGTT+TGG + tig0033518:25095-25114 Msa1451620:intron 40.0%
TTACCTGGGCTTCATAGTTT+GGG + tig0033518:25096-25115 Msa1451620:intron 40.0%
TGCAGAAAAGGTTGAGAAAC+TGG - tig0033518:25123-25142 None:intergenic 40.0%
!! AGTTTGTTTTCACCTCAGTC+AGG + tig0033518:25173-25192 Msa1451620:intron 40.0%
!! GTTTGTTTTCACCTCAGTCA+GGG + tig0033518:25174-25193 Msa1451620:intron 40.0%
!! TTTGTTTTCACCTCAGTCAG+GGG + tig0033518:25175-25194 Msa1451620:intron 40.0%
TTCATAGTGCTTGTGCGTTT+GGG + tig0033518:25213-25232 Msa1451620:intron 40.0%
GTAACAAACATGCATGTGGA+AGG - tig0033518:25262-25281 None:intergenic 40.0%
! TGGGAACTAATGGTGGAAAA+GGG - tig0033518:25310-25329 None:intergenic 40.0%
! ATGGGAACTAATGGTGGAAA+AGG - tig0033518:25311-25330 None:intergenic 40.0%
!! GGTTTTATGGGACTCATCAT+GGG - tig0033518:25329-25348 None:intergenic 40.0%
!!! TGGTTTTATGGGACTCATCA+TGG - tig0033518:25330-25349 None:intergenic 40.0%
TGATGAGTCCCATAAAACCA+TGG + tig0033518:25330-25349 Msa1451620:intron 40.0%
TCACAAGCTGTTTACAGAAC+TGG + tig0033518:25531-25550 Msa1451620:CDS 40.0%
AACAGACATTGTGTTGTGCA+GGG + tig0033518:25632-25651 Msa1451620:intron 40.0%
TTCTTTAGTGAACTCGAGCT+GGG - tig0033518:25801-25820 None:intergenic 40.0%
TTGATCGCGATAATGAGCTT+AGG + tig0033518:25965-25984 Msa1451620:CDS 40.0%
! TCAGATTTTTCCACTTTGGG+AGG - tig0033518:26075-26094 None:intergenic 40.0%
TTCAGGCATCTCAAACTATG+GGG - tig0033518:26167-26186 None:intergenic 40.0%
GGCGAATGTATAAACAAGAC+TGG + tig0033518:26420-26439 Msa1451620:three_prime_UTR 40.0%
! ACAAGACTGGTTAGATTGTG+GGG + tig0033518:26433-26452 Msa1451620:three_prime_UTR 40.0%
GAGAAGAAGGAAAGGAAACG+CGG - tig0033518:22366-22385 None:intergenic 45.0%
TCAATCGAGATACGTCTCAC+CGG + tig0033518:22596-22615 Msa1451620:CDS 45.0%
TAGAACCATGGTCTCGCAAT+TGG + tig0033518:22735-22754 Msa1451620:intron 45.0%
TAAGGAGGTTAGAAGGCTTG+CGG + tig0033518:22891-22910 Msa1451620:CDS 45.0%
GCGGATAATATGGTACAGCT+TGG + tig0033518:22910-22929 Msa1451620:CDS 45.0%
CTGCATTAAATAACCCCTGG+TGG - tig0033518:23307-23326 None:intergenic 45.0%
! ATGCAGTTTTTCCCTAACCC+AGG + tig0033518:23321-23340 Msa1451620:intron 45.0%
TGCAACACTATACCGAACCA+AGG - tig0033518:23479-23498 None:intergenic 45.0%
ATTCCTTCAGGAAAACGGAC+AGG - tig0033518:23567-23586 None:intergenic 45.0%
AGAACATCTACGGCTCTGTT+TGG - tig0033518:23983-24002 None:intergenic 45.0%
ACAGAGCCGTAGATGTTCTT+TGG + tig0033518:23984-24003 Msa1451620:intron 45.0%
! GTTTTGTGAGAGTGGATGCA+TGG - tig0033518:24060-24079 None:intergenic 45.0%
! TTTCAGGTGCTATGATGGTG+AGG + tig0033518:24301-24320 Msa1451620:intron 45.0%
GAGACCGAGATATACTAACG+AGG - tig0033518:24348-24367 None:intergenic 45.0%
GTATATCTCGGTCTCAACAC+CGG + tig0033518:24353-24372 Msa1451620:intron 45.0%
! TCTCGCCATAGGAGGTTTTA+AGG + tig0033518:24377-24396 Msa1451620:intron 45.0%
!! CTCGCCATAGGAGGTTTTAA+GGG + tig0033518:24378-24397 Msa1451620:intron 45.0%
!!! TCGCCATAGGAGGTTTTAAG+GGG + tig0033518:24379-24398 Msa1451620:intron 45.0%
! ATGACTCCCAAGAGTGTGTT+TGG - tig0033518:24908-24927 None:intergenic 45.0%
TACCTGGGCTTCATAGTTTG+GGG + tig0033518:25097-25116 Msa1451620:intron 45.0%
CTTCATAGTGCTTGTGCGTT+TGG + tig0033518:25212-25231 Msa1451620:intron 45.0%
CTCATCATGGGAACTAATGG+TGG - tig0033518:25317-25336 None:intergenic 45.0%
GGACTCATCATGGGAACTAA+TGG - tig0033518:25320-25339 None:intergenic 45.0%
GTCCCATAAAACCATGGCTA+TGG + tig0033518:25336-25355 Msa1451620:intron 45.0%
GAACAGACATTGTGTTGTGC+AGG + tig0033518:25631-25650 Msa1451620:intron 45.0%
! ATCGAACTGGTGGATACACT+AGG + tig0033518:25655-25674 Msa1451620:CDS 45.0%
! TCGAACTGGTGGATACACTA+GGG + tig0033518:25656-25675 Msa1451620:CDS 45.0%
CTTCTTTAGTGAACTCGAGC+TGG - tig0033518:25802-25821 None:intergenic 45.0%
TCAGGCATCTCAAACTATGG+GGG - tig0033518:26166-26185 None:intergenic 45.0%
CGACAGTAATTGCCAGTTCA+GGG - tig0033518:26379-26398 None:intergenic 45.0%
ACGACAGTAATTGCCAGTTC+AGG - tig0033518:26380-26399 None:intergenic 45.0%
AAACCTCCTATGGCGAGATC+CGG - tig0033518:24375-24394 None:intergenic 50.0%
!! GACGAGGTGCCGCAAATATA+CGG - tig0033518:24414-24433 None:intergenic 50.0%
CAGCGAAGTGAGTGCAGAAA+AGG - tig0033518:25135-25154 None:intergenic 50.0%
TTCACCTCAGTCAGGGGATA+TGG + tig0033518:25181-25200 Msa1451620:intron 50.0%
! AGTCAGGGGATATGGCTTGT+GGG + tig0033518:25189-25208 Msa1451620:intron 50.0%
! GTGGATACACTAGGGTGCTA+CGG + tig0033518:25664-25683 Msa1451620:CDS 50.0%
!! AGTTGGTGATGCTGCACCAA+TGG + tig0033518:25698-25717 Msa1451620:CDS 50.0%
AGATCGTGTCCAGGGATCAA+GGG - tig0033518:26031-26050 None:intergenic 50.0%
GTAAGACGAGATCGTGTCCA+GGG - tig0033518:26039-26058 None:intergenic 50.0%
! TCACAGGGTGCTTGTGAGGT+TGG - tig0033518:22395-22414 None:intergenic 55.0%
! ACTCTCACAGGGTGCTTGTG+AGG - tig0033518:22399-22418 None:intergenic 55.0%
! CTCACCGGTTATCCATGCTC+AGG + tig0033518:22611-22630 Msa1451620:CDS 55.0%
CCTCACCAATTGCGAGACCA+TGG - tig0033518:22743-22762 None:intergenic 55.0%
CCATGGTCTCGCAATTGGTG+AGG + tig0033518:22740-22759 Msa1451620:CDS 55.0%
CCTTCAGGAAAACGGACAGG+AGG - tig0033518:23564-23583 None:intergenic 55.0%
! CCTCCTGTCCGTTTTCCTGA+AGG + tig0033518:23561-23580 Msa1451620:intron 55.0%
! AGGTGCTATGATGGTGAGGC+AGG + tig0033518:24305-24324 Msa1451620:intron 55.0%
! GGTGCTATGATGGTGAGGCA+GGG + tig0033518:24306-24325 Msa1451620:intron 55.0%
GTGAGGCAGGGATATGCTTG+CGG + tig0033518:24318-24337 Msa1451620:intron 55.0%
TCAACACCGGATCTCGCCAT+AGG + tig0033518:24366-24385 Msa1451620:intron 55.0%
CAATGGTGACAGTGCGACAC+TGG + tig0033518:24996-25015 Msa1451620:intron 55.0%
CAAGCCATATCCCCTGACTG+AGG - tig0033518:25188-25207 None:intergenic 55.0%
CAGTCAGGGGATATGGCTTG+TGG + tig0033518:25188-25207 Msa1451620:intron 55.0%
AGGGATCCGTATGTGCTGCA+AGG + tig0033518:25473-25492 Msa1451620:intron 55.0%
AGCACGCCTTGCAGCACATA+CGG - tig0033518:25482-25501 None:intergenic 55.0%
GTGTTGTGCAGGGATCGAAC+TGG + tig0033518:25642-25661 Msa1451620:intron 55.0%
TTGTGCAGGGATCGAACTGG+TGG + tig0033518:25645-25664 Msa1451620:intron 55.0%
CTACGGACTCGCATTCGAGT+TGG + tig0033518:25681-25700 Msa1451620:CDS 55.0%
GATCGTGTCCAGGGATCAAG+GGG - tig0033518:26030-26049 None:intergenic 55.0%
GAGATCGTGTCCAGGGATCA+AGG - tig0033518:26032-26051 None:intergenic 55.0%
GGTAAGACGAGATCGTGTCC+AGG - tig0033518:26040-26059 None:intergenic 55.0%
GGACACGATCTCGTCTTACC+AGG + tig0033518:26040-26059 Msa1451620:CDS 55.0%
ACACCGGATCTCGCCATAGG+AGG + tig0033518:24369-24388 Msa1451620:intron 60.0%
GGCCCCAAACTATGAAGCCC+AGG - tig0033518:25102-25121 None:intergenic 60.0%
! CGTGCTGCTAGTTTCGTGCG+AGG + tig0033518:25496-25515 Msa1451620:CDS 60.0%
TGCGGTGGTTGAGGAGTTGG+TGG - tig0033518:26000-26019 None:intergenic 60.0%
CTCTGCGGTGGTTGAGGAGT+TGG - tig0033518:26003-26022 None:intergenic 60.0%
!! GGATCAAGGGGTGCTCTCTG+CGG - tig0033518:26018-26037 None:intergenic 60.0%
!! AGAGAGCACCCCTTGATCCC+TGG + tig0033518:26019-26038 Msa1451620:CDS 60.0%
! TTTGGGAGGCGCAAACTGCC+TGG - tig0033518:26061-26080 None:intergenic 60.0%
GCAGTTTGCGCCTCCCAAAG+TGG + tig0033518:26062-26081 Msa1451620:CDS 60.0%
GGTGCTCTCTGCGGTGGTTG+AGG - tig0033518:26009-26028 None:intergenic 65.0%
!! TCAAGGGGTGCTCTCTGCGG+TGG - tig0033518:26015-26034 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0033518 gene 22350 26468 22350 ID=Msa1451620;Name=Msa1451620
tig0033518 mRNA 22350 26468 22350 ID=Msa1451620-mRNA-1;Parent=Msa1451620;Name=Msa1451620-mRNA-1;_AED=0.14;_eAED=0.14;_QI=227|1|1|1|1|1|6|352|162
tig0033518 exon 22350 22632 22350 ID=Msa1451620-mRNA-1:exon:18145;Parent=Msa1451620-mRNA-1
tig0033518 exon 22738 22792 22738 ID=Msa1451620-mRNA-1:exon:18146;Parent=Msa1451620-mRNA-1
tig0033518 exon 22889 22939 22889 ID=Msa1451620-mRNA-1:exon:18147;Parent=Msa1451620-mRNA-1
tig0033518 exon 25475 25566 25475 ID=Msa1451620-mRNA-1:exon:18148;Parent=Msa1451620-mRNA-1
tig0033518 exon 25653 25730 25653 ID=Msa1451620-mRNA-1:exon:18149;Parent=Msa1451620-mRNA-1
tig0033518 exon 25960 26468 25960 ID=Msa1451620-mRNA-1:exon:18150;Parent=Msa1451620-mRNA-1
tig0033518 five_prime_UTR 22350 22576 22350 ID=Msa1451620-mRNA-1:five_prime_utr;Parent=Msa1451620-mRNA-1
tig0033518 CDS 22577 22632 22577 ID=Msa1451620-mRNA-1:cds;Parent=Msa1451620-mRNA-1
tig0033518 CDS 22738 22792 22738 ID=Msa1451620-mRNA-1:cds;Parent=Msa1451620-mRNA-1
tig0033518 CDS 22889 22939 22889 ID=Msa1451620-mRNA-1:cds;Parent=Msa1451620-mRNA-1
tig0033518 CDS 25475 25566 25475 ID=Msa1451620-mRNA-1:cds;Parent=Msa1451620-mRNA-1
tig0033518 CDS 25653 25730 25653 ID=Msa1451620-mRNA-1:cds;Parent=Msa1451620-mRNA-1
tig0033518 CDS 25960 26116 25960 ID=Msa1451620-mRNA-1:cds;Parent=Msa1451620-mRNA-1
tig0033518 three_prime_UTR 26117 26468 26117 ID=Msa1451620-mRNA-1:three_prime_utr;Parent=Msa1451620-mRNA-1
Gene Sequence

>Msa1451620

ATGACAAAGCTCAGGAAGCTCAATCGAGATACGTCTCACCGGTTATCCATGCTCAGAACCATGGTCTCGCAATTGGTGAGGCATGAACGCATTGAAACTACTATTACCAAGGCTAAGGAGGTTAGAAGGCTTGCGGATAATATGGTACAGCTTGGTAAAGAGGGATCCGTATGTGCTGCAAGGCGTGCTGCTAGTTTCGTGCGAGGAGACGATGTTCTTCACAAGCTGTTTACAGAACTGGCTTATCGATACAAGGATCGAACTGGTGGATACACTAGGGTGCTACGGACTCGCATTCGAGTTGGTGATGCTGCACCAATGGCCTATATTGAGCTTATTGATCGCGATAATGAGCTTAGGCAGTCAAAGCCACCAACTCCTCAACCACCGCAGAGAGCACCCCTTGATCCCTGGACACGATCTCGTCTTACCAGGCAGTTTGCGCCTCCCAAAGTGGAAAAATCTGATTCTGATTCTGATTTAATCTGA

Protein sequence

>Msa1451620

MTKLRKLNRDTSHRLSMLRTMVSQLVRHERIETTITKAKEVRRLADNMVQLGKEGSVCAARRAASFVRGDDVLHKLFTELAYRYKDRTGGYTRVLRTRIRVGDAAPMAYIELIDRDNELRQSKPPTPQPPQRAPLDPWTRSRLTRQFAPPKVEKSDSDSDLI*