Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159600 | XP_013467435.1 | 89.825 | 285 | 4 | 3 | 3 | 263 | 17 | 300 | 4.99e-179 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159600 | A0A072VI51 | 89.825 | 285 | 4 | 3 | 3 | 263 | 17 | 300 | 2.38e-179 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0159600 | Msa0159630 | 0.976031 | 4.696957e-141 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159600 | MtrunA17_Chr1g0171941 | 89.825 | 285 | 4 | 3 | 3 | 263 | 17 | 300 | 0.0 | 504 |
| Msa0159600 | MtrunA17_Chr7g0256541 | 40.183 | 219 | 82 | 7 | 11 | 190 | 1 | 209 | 2.55e-40 | 144 |
| Msa0159600 | MtrunA17_Chr8g0347131 | 36.897 | 290 | 144 | 10 | 3 | 262 | 58 | 338 | 2.49e-37 | 135 |
| Msa0159600 | MtrunA17_Chr7g0256531 | 40.244 | 164 | 63 | 6 | 39 | 177 | 20 | 173 | 3.55e-26 | 103 |
| Msa0159600 | MtrunA17_Chr6g0451151 | 32.461 | 191 | 92 | 7 | 97 | 258 | 42 | 224 | 9.90e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159600 | AT3G10250.2 | 47.857 | 280 | 119 | 5 | 3 | 257 | 17 | 294 | 1.92e-80 | 245 |
| Msa0159600 | AT3G10250.5 | 47.857 | 280 | 119 | 5 | 3 | 257 | 17 | 294 | 1.92e-80 | 245 |
| Msa0159600 | AT3G10250.1 | 47.857 | 280 | 119 | 5 | 3 | 257 | 17 | 294 | 1.92e-80 | 245 |
| Msa0159600 | AT3G10250.4 | 47.857 | 280 | 119 | 5 | 3 | 257 | 17 | 294 | 1.92e-80 | 245 |
| Msa0159600 | AT3G10250.3 | 46.947 | 262 | 112 | 5 | 3 | 239 | 17 | 276 | 3.12e-72 | 223 |
| Msa0159600 | AT5G04090.2 | 47.636 | 275 | 118 | 6 | 3 | 262 | 17 | 280 | 7.87e-72 | 223 |
| Msa0159600 | AT5G04090.6 | 47.636 | 275 | 118 | 6 | 3 | 262 | 34 | 297 | 1.20e-71 | 223 |
| Msa0159600 | AT5G04090.4 | 44.867 | 263 | 119 | 6 | 15 | 262 | 1 | 252 | 4.75e-62 | 197 |
| Msa0159600 | AT5G04090.7 | 44.867 | 263 | 119 | 6 | 15 | 262 | 1 | 252 | 4.75e-62 | 197 |
| Msa0159600 | AT5G04090.3 | 41.564 | 243 | 117 | 5 | 35 | 262 | 7 | 239 | 5.82e-50 | 165 |
| Msa0159600 | AT5G04090.5 | 41.564 | 243 | 117 | 5 | 35 | 262 | 7 | 239 | 5.82e-50 | 165 |
| Msa0159600 | AT5G04090.1 | 41.564 | 243 | 117 | 5 | 35 | 262 | 7 | 239 | 5.82e-50 | 165 |
| Msa0159600 | AT3G61700.4 | 36.332 | 289 | 145 | 10 | 3 | 262 | 56 | 334 | 1.70e-34 | 127 |
| Msa0159600 | AT3G61700.1 | 36.332 | 289 | 145 | 10 | 3 | 262 | 58 | 336 | 1.86e-34 | 127 |
| Msa0159600 | AT3G61700.3 | 36.332 | 289 | 145 | 10 | 3 | 262 | 58 | 336 | 1.86e-34 | 127 |
| Msa0159600 | AT3G61700.2 | 35.714 | 294 | 145 | 10 | 3 | 262 | 58 | 341 | 1.14e-33 | 125 |
| Msa0159600 | AT2G46420.2 | 35.144 | 313 | 122 | 12 | 3 | 262 | 55 | 339 | 6.22e-33 | 123 |
| Msa0159600 | AT2G46420.3 | 35.144 | 313 | 122 | 12 | 3 | 262 | 55 | 339 | 1.09e-32 | 123 |
| Msa0159600 | AT2G46420.1 | 35.144 | 313 | 122 | 12 | 3 | 262 | 55 | 339 | 1.09e-32 | 123 |
| Msa0159600 | AT3G55240.1 | 46.875 | 64 | 33 | 1 | 3 | 66 | 13 | 75 | 2.48e-12 | 62.0 |
Find 64 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCATCCTTCGGAGTTT+TGG | 0.205790 | 1_4:-30232775 | Msa0159600:CDS |
| ACTCCGAAGGATGAAATATC+TGG | 0.250315 | 1_4:+30232780 | None:intergenic |
| AATGAGAACTTCCTTCAAAA+TGG | 0.305622 | 1_4:-30232441 | Msa0159600:CDS |
| CTCTTTCTTATCAGATATAA+TGG | 0.313298 | 1_4:-30232499 | Msa0159600:intron |
| AGAGTTTCCACAACTTCTTT+TGG | 0.323088 | 1_4:+30235997 | None:intergenic |
| GAATACTAGGGTACGCGATT+TGG | 0.326435 | 1_4:-30233060 | Msa0159600:CDS |
| CAGCAGCAACCTCAGATAAT+AGG | 0.336558 | 1_4:+30234297 | None:intergenic |
| GTGGGTCGTCGCTGAATACT+AGG | 0.353386 | 1_4:-30233073 | Msa0159600:CDS |
| TTCTATGAATGGAGCACTCC+TGG | 0.381734 | 1_4:-30232805 | Msa0159600:CDS |
| AGCAAATAACAGAGTTCAAC+AGG | 0.384713 | 1_4:-30234270 | Msa0159600:CDS |
| TTCATCTCAAAACTCAAGCT+TGG | 0.398986 | 1_4:-30232988 | Msa0159600:CDS |
| TTCTGGCTTCACAGCTGCAC+TGG | 0.405095 | 1_4:+30233145 | None:intergenic |
| CTATCCAAGGTGTCCCTACC+TGG | 0.407605 | 1_4:-30232472 | Msa0159600:CDS |
| AGATGTCTGCTCGTGGCAAT+AGG | 0.410732 | 1_4:-30233034 | Msa0159600:CDS |
| TACCCACAATCTGTAGTAAT+GGG | 0.414613 | 1_4:-30231971 | Msa0159600:three_prime_UTR |
| TCATCTCAAAACTCAAGCTT+GGG | 0.415904 | 1_4:-30232987 | Msa0159600:intron |
| ATAGAAGTTTAGAAGTTTGA+CGG | 0.431645 | 1_4:-30232040 | Msa0159600:three_prime_UTR |
| GACCCAGATATTTCATCCTT+CGG | 0.436417 | 1_4:-30232783 | Msa0159600:CDS |
| CTGCATGATGTGTTTAATAA+TGG | 0.441491 | 1_4:-30233095 | Msa0159600:CDS |
| TCTTCGGTGAACGTGTGTAT+AGG | 0.442352 | 1_4:-30232001 | Msa0159600:three_prime_UTR |
| ATATGTGAACCGTTAGAGTT+AGG | 0.452272 | 1_4:+30234190 | None:intergenic |
| AATGGGAAATTAAATTTGAA+AGG | 0.455061 | 1_4:-30231954 | Msa0159600:three_prime_UTR |
| TGCAAAGCTATGTACCCTAA+TGG | 0.456074 | 1_4:+30231868 | None:intergenic |
| CTACCCACAATCTGTAGTAA+TGG | 0.466859 | 1_4:-30231972 | Msa0159600:three_prime_UTR |
| TGGTCCTGATGGCACTGTCT+TGG | 0.468713 | 1_4:-30232892 | Msa0159600:CDS |
| ACTGCTGCATCACCAATAGT+TGG | 0.473168 | 1_4:+30232861 | None:intergenic |
| TCAAACTCTCATTCTATGAA+TGG | 0.480229 | 1_4:-30232816 | Msa0159600:CDS |
| CAACTGCAGTTGATTGTAGC+TGG | 0.484060 | 1_4:+30234221 | None:intergenic |
| TTTCCCATTACTACAGATTG+TGG | 0.486442 | 1_4:+30231968 | None:intergenic |
| TTGGAAGCATGCCCAACTAT+TGG | 0.488503 | 1_4:-30232873 | Msa0159600:CDS |
| GCTTCCAAGACAGTGCCATC+AGG | 0.512160 | 1_4:+30232888 | None:intergenic |
| CTGCTGCATCACCAATAGTT+GGG | 0.513220 | 1_4:+30232862 | None:intergenic |
| CTCCGAAGGATGAAATATCT+GGG | 0.525582 | 1_4:+30232781 | None:intergenic |
| AAAACAACCCAAAATAAAAG+AGG | 0.526906 | 1_4:+30231902 | None:intergenic |
| ACTATGAAATTCCAACTCTT+CGG | 0.528345 | 1_4:-30232017 | Msa0159600:three_prime_UTR |
| TTCCCATTACTACAGATTGT+GGG | 0.533381 | 1_4:+30231969 | None:intergenic |
| CATGATGTGTTTAATAATGG+TGG | 0.533640 | 1_4:-30233092 | Msa0159600:CDS |
| CAGCTACAATCAACTGCAGT+TGG | 0.536782 | 1_4:-30234220 | Msa0159600:CDS |
| ACACACGTTCACCGAAGAGT+TGG | 0.548816 | 1_4:+30232006 | None:intergenic |
| TTATCTGAGGTTGCTGCTGA+AGG | 0.548929 | 1_4:-30234293 | Msa0159600:CDS |
| AGGATGAAATATCTGGGTCC+AGG | 0.551498 | 1_4:+30232787 | None:intergenic |
| CATTATTAAACACATCATGC+AGG | 0.555347 | 1_4:+30233096 | None:intergenic |
| TATGAACCCAAAAGAAGTTG+TGG | 0.557067 | 1_4:-30236004 | Msa0159600:CDS |
| CTGTCAGATCTGAAAGGCTG+AGG | 0.564552 | 1_4:+30232736 | None:intergenic |
| GAGATGAAAGCATGCTTGGT+GGG | 0.566351 | 1_4:+30233003 | None:intergenic |
| TGCTCAGCAGCATAGCAAGA+TGG | 0.577638 | 1_4:+30233170 | None:intergenic |
| TGAGATGAAAGCATGCTTGG+TGG | 0.588411 | 1_4:+30233002 | None:intergenic |
| AGAGTTCAACAGGTTGCTGA+AGG | 0.610651 | 1_4:-30234260 | Msa0159600:CDS |
| CTCATTAGTAGTACCCAGGT+AGG | 0.611879 | 1_4:+30232458 | None:intergenic |
| CTACCAAGTTCGGTAAAACC+AGG | 0.614163 | 1_4:+30235952 | None:intergenic |
| GTACCCAGGTAGGGACACCT+TGG | 0.616414 | 1_4:+30232468 | None:intergenic |
| TATCCAAGGTGTCCCTACCT+GGG | 0.624459 | 1_4:-30232471 | Msa0159600:CDS |
| AATCAGCTGTCAGATCTGAA+AGG | 0.624793 | 1_4:+30232730 | None:intergenic |
| AGTTCTCATTAGTAGTACCC+AGG | 0.626500 | 1_4:+30232454 | None:intergenic |
| TCATTAGTAGTACCCAGGTA+GGG | 0.632492 | 1_4:+30232459 | None:intergenic |
| GGTTCGCTACCTAACTCTAA+CGG | 0.633214 | 1_4:-30234199 | Msa0159600:intron |
| TGGGTCGTCGCTGAATACTA+GGG | 0.638520 | 1_4:-30233072 | Msa0159600:CDS |
| TTGGCTCAGATGTCTGCTCG+TGG | 0.643582 | 1_4:-30233041 | Msa0159600:CDS |
| ATTATTAAACACATCATGCA+GGG | 0.645648 | 1_4:+30233097 | None:intergenic |
| AATCTGCCCCAAAACTCCGA+AGG | 0.659226 | 1_4:+30232767 | None:intergenic |
| AAGCCAGAAAATATGCGACA+TGG | 0.667121 | 1_4:-30233131 | Msa0159600:CDS |
| ATATAATGGAGAGCTATCCA+AGG | 0.674821 | 1_4:-30232485 | Msa0159600:CDS |
| ATGATGTGTTTAATAATGGT+GGG | 0.686419 | 1_4:-30233091 | Msa0159600:CDS |
| ATTAAACACATCATGCAGGG+TGG | 0.716140 | 1_4:+30233100 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATAATAATAAGAAATTA+CGG | + | chr1_4:30233626-30233645 | None:intergenic | 10.0% |
| !! | AATTAAATAAAAATGACATC+TGG | + | chr1_4:30232579-30232598 | None:intergenic | 15.0% |
| !! | TATACTGATACAAATATATA+GGG | + | chr1_4:30233658-30233677 | None:intergenic | 15.0% |
| !! | ATATACTGATACAAATATAT+AGG | + | chr1_4:30233659-30233678 | None:intergenic | 15.0% |
| !! | CAATATTAAGTTAGTAATTA+TGG | + | chr1_4:30233733-30233752 | None:intergenic | 15.0% |
| !!! | GTATGTTTATTATAAGTTTT+AGG | + | chr1_4:30233794-30233813 | None:intergenic | 15.0% |
| !! | TAATAAATGTTTACTCAAAA+AGG | + | chr1_4:30234097-30234116 | None:intergenic | 15.0% |
| !! | ATAGTTATAATAAAATGCAA+TGG | + | chr1_4:30234700-30234719 | None:intergenic | 15.0% |
| !! | AAACAAATATTATTACTACT+AGG | + | chr1_4:30236110-30236129 | None:intergenic | 15.0% |
| !! | ATTCTATTTCCTAATCTTTA+GGG | + | chr1_4:30232001-30232020 | None:intergenic | 20.0% |
| !! | CAACATAAAGATAAATAACA+TGG | - | chr1_4:30232021-30232040 | Msa0159600:three_prime_UTR | 20.0% |
| !! | AATATTCACAACATATGTAA+AGG | + | chr1_4:30232423-30232442 | None:intergenic | 20.0% |
| !! | GTATCTATTATTATCTCTTA+GGG | - | chr1_4:30233571-30233590 | Msa0159600:intron | 20.0% |
| !! | TATTTGTATCAGTATATACA+AGG | - | chr1_4:30233662-30233681 | Msa0159600:intron | 20.0% |
| !! | ATTTGTATCAGTATATACAA+GGG | - | chr1_4:30233663-30233682 | Msa0159600:intron | 20.0% |
| !!! | AGAAAATCAAGAATTTTTCA+AGG | - | chr1_4:30233897-30233916 | Msa0159600:intron | 20.0% |
| !!! | ATTATTTTGAATAGCATATC+AGG | - | chr1_4:30234141-30234160 | Msa0159600:intron | 20.0% |
| !! | ATATAATTGGAAAAGTTAGT+TGG | - | chr1_4:30234248-30234267 | Msa0159600:CDS | 20.0% |
| !! | TATAATTGGAAAAGTTAGTT+GGG | - | chr1_4:30234249-30234268 | Msa0159600:CDS | 20.0% |
| !! | GCAATAATTCATAAATGTTA+AGG | + | chr1_4:30234275-30234294 | None:intergenic | 20.0% |
| !! | TTATGTTGCAATCAAAAAAT+TGG | - | chr1_4:30234379-30234398 | Msa0159600:intron | 20.0% |
| !!! | AATCAAAAAATTGGTTTCAT+GGG | - | chr1_4:30234388-30234407 | Msa0159600:intron | 20.0% |
| !! | CAATTGTTTAGAAAGTAAAT+GGG | - | chr1_4:30234761-30234780 | Msa0159600:intron | 20.0% |
| !! | TCTTAATCTTTGACAATAAA+AGG | - | chr1_4:30235900-30235919 | Msa0159600:intron | 20.0% |
| !! | CTTAATCTTTGACAATAAAA+GGG | - | chr1_4:30235901-30235920 | Msa0159600:intron | 20.0% |
| !! | AATGGGAAATTAAATTTGAA+AGG | - | chr1_4:30236263-30236282 | Msa0159600:intron | 20.0% |
| ! | AACATTATTCAGTCTTAAGA+TGG | + | chr1_4:30231892-30231911 | None:intergenic | 25.0% |
| ! | GATTCTATTTCCTAATCTTT+AGG | + | chr1_4:30232002-30232021 | None:intergenic | 25.0% |
| ! | AGAAAAATTACTACCAAGTT+CGG | + | chr1_4:30232278-30232297 | None:intergenic | 25.0% |
| ! | GAATATTCCTGTATTTATGA+TGG | - | chr1_4:30232436-30232455 | Msa0159600:CDS | 25.0% |
| ! | TAAATAAAAATGACATCTGG+TGG | + | chr1_4:30232576-30232595 | None:intergenic | 25.0% |
| ! | AGATTCTTTACTAAAATGCA+AGG | - | chr1_4:30232660-30232679 | Msa0159600:intron | 25.0% |
| ! | TTCAACATAAATTCATGCAA+CGG | + | chr1_4:30232732-30232751 | None:intergenic | 25.0% |
| !! | TATTTAGTAATTTGCCTTGA+AGG | + | chr1_4:30232856-30232875 | None:intergenic | 25.0% |
| ! | TTCAAGGCAAATTACTAAAT+AGG | - | chr1_4:30232855-30232874 | Msa0159600:CDS | 25.0% |
| ! | AGACTCATACTTTACAAATT+TGG | + | chr1_4:30233017-30233036 | None:intergenic | 25.0% |
| !!! | TTTTTAGGTTACCATGATAT+TGG | + | chr1_4:30233340-30233359 | None:intergenic | 25.0% |
| ! | AGATAGGAACATATTTACAA+GGG | + | chr1_4:30233388-30233407 | None:intergenic | 25.0% |
| ! | TAAGATCAGTTTCTTATCTT+AGG | - | chr1_4:30233548-30233567 | Msa0159600:intron | 25.0% |
| ! | AAGATCAGTTTCTTATCTTA+GGG | - | chr1_4:30233549-30233568 | Msa0159600:intron | 25.0% |
| ! | GGTATCTATTATTATCTCTT+AGG | - | chr1_4:30233570-30233589 | Msa0159600:intron | 25.0% |
| ! | TGTATTAATGTGTTTCAGTT+TGG | - | chr1_4:30233860-30233879 | Msa0159600:intron | 25.0% |
| !!! | GAAACTAATATTGACTTACA+TGG | + | chr1_4:30234057-30234076 | None:intergenic | 25.0% |
| !! | GTAAGTCAATATTAGTTTCA+TGG | - | chr1_4:30234058-30234077 | Msa0159600:intron | 25.0% |
| !! | CAATCAAAAAATTGGTTTCA+TGG | - | chr1_4:30234387-30234406 | Msa0159600:intron | 25.0% |
| ! | GCAATTGTTTAGAAAGTAAA+TGG | - | chr1_4:30234760-30234779 | Msa0159600:intron | 25.0% |
| ! | AAGACTATTTAAGAATACCA+CGG | - | chr1_4:30234847-30234866 | Msa0159600:intron | 25.0% |
| ! | AAAAATTATAGTAGTTTCCG+TGG | + | chr1_4:30234867-30234886 | None:intergenic | 25.0% |
| ! | TTAAGAAAAGAGATAAGTGT+TGG | + | chr1_4:30235013-30235032 | None:intergenic | 25.0% |
| ! | ATTATTAAACACATCATGCA+GGG | + | chr1_4:30235123-30235142 | None:intergenic | 25.0% |
| ! | ATGATGTGTTTAATAATGGT+GGG | - | chr1_4:30235126-30235145 | Msa0159600:intron | 25.0% |
| ! | GTTTGATTCAAGGAATTAAT+GGG | - | chr1_4:30235252-30235271 | Msa0159600:intron | 25.0% |
| ! | TTTGATTCAAGGAATTAATG+GGG | - | chr1_4:30235253-30235272 | Msa0159600:intron | 25.0% |
| ! | ATGTACAAAATTAAAAAGCC+TGG | + | chr1_4:30235663-30235682 | None:intergenic | 25.0% |
| ! | CTCTTTCTTATCAGATATAA+TGG | - | chr1_4:30235718-30235737 | Msa0159600:intron | 25.0% |
| !! | TTTGACAATAAAAGGGTATA+AGG | - | chr1_4:30235908-30235927 | Msa0159600:intron | 25.0% |
| ! | ATACAATGGTAAAATAACGA+AGG | + | chr1_4:30236058-30236077 | None:intergenic | 25.0% |
| ! | ATTTCATGCTTTGTATACAA+TGG | + | chr1_4:30236072-30236091 | None:intergenic | 25.0% |
| !! | TACAAAGCATGAAATCATTT+TGG | - | chr1_4:30236077-30236096 | Msa0159600:intron | 25.0% |
| ! | ATAGAAGTTTAGAAGTTTGA+CGG | - | chr1_4:30236177-30236196 | Msa0159600:intron | 25.0% |
| !!! | AATGAACTCCTCTTTTATTT+TGG | - | chr1_4:30236307-30236326 | Msa0159600:intron | 25.0% |
| !!! | ATGAACTCCTCTTTTATTTT+GGG | - | chr1_4:30236308-30236327 | Msa0159600:intron | 25.0% |
| ! | AAAACAACCCAAAATAAAAG+AGG | + | chr1_4:30236318-30236337 | None:intergenic | 25.0% |
| ACCTATATATCAAAGAGAGA+CGG | - | chr1_4:30231923-30231942 | Msa0159600:three_prime_UTR | 30.0% | |
| ! | ATTTCCTAATCTTTAGGGAT+TGG | + | chr1_4:30231996-30232015 | None:intergenic | 30.0% |
| ! | CTTTTATCTGACTTTTGCTA+TGG | - | chr1_4:30232134-30232153 | Msa0159600:intron | 30.0% |
| !! | CTTTTGCTATGGTGTTTATT+TGG | - | chr1_4:30232145-30232164 | Msa0159600:intron | 30.0% |
| ! | TGGTAGTAATTTTTCTTCAG+TGG | - | chr1_4:30232282-30232301 | Msa0159600:intron | 30.0% |
| ACTAAATTGTCAAATGCACA+AGG | + | chr1_4:30232350-30232369 | None:intergenic | 30.0% | |
| ! | TATTTTGTCTTCTGTCTTTG+AGG | - | chr1_4:30232607-30232626 | Msa0159600:intron | 30.0% |
| ! | ATTTTGTCTTCTGTCTTTGA+GGG | - | chr1_4:30232608-30232627 | Msa0159600:intron | 30.0% |
| AGATGTATTCCAATTTGTGT+TGG | + | chr1_4:30232827-30232846 | None:intergenic | 30.0% | |
| TTAGGCGATGAAATGTAAAT+GGG | + | chr1_4:30232885-30232904 | None:intergenic | 30.0% | |
| ! | GAATTTTTCCACAATGAGTT+AGG | + | chr1_4:30232903-30232922 | None:intergenic | 30.0% |
| ! | ATGCTTGAAATTTCAAGTAC+AGG | - | chr1_4:30233100-30233119 | Msa0159600:CDS | 30.0% |
| !!! | GCTAGAACATGACTTTTTTT+AGG | + | chr1_4:30233355-30233374 | None:intergenic | 30.0% |
| CAGATAGGAACATATTTACA+AGG | + | chr1_4:30233389-30233408 | None:intergenic | 30.0% | |
| CTTGTAAATATGTTCCTATC+TGG | - | chr1_4:30233387-30233406 | Msa0159600:intron | 30.0% | |
| ATATGTTCCTATCTGGATTA+AGG | - | chr1_4:30233394-30233413 | Msa0159600:intron | 30.0% | |
| !! | ACTAATATTGACTTACATGG+AGG | + | chr1_4:30234054-30234073 | None:intergenic | 30.0% |
| !! | TTTTTAAGAGACTGCAAAAC+AGG | + | chr1_4:30234122-30234141 | None:intergenic | 30.0% |
| ! | TGAACCAAATACTTAACTTG+AGG | + | chr1_4:30234358-30234377 | None:intergenic | 30.0% |
| !!! | TACCCTTTATTTTACACAAG+AGG | - | chr1_4:30234496-30234515 | Msa0159600:intron | 30.0% |
| AGCCTCTTGTGTAAAATAAA+GGG | + | chr1_4:30234501-30234520 | None:intergenic | 30.0% | |
| TGTAGTTTATAACCAAGAGA+TGG | + | chr1_4:30234590-30234609 | None:intergenic | 30.0% | |
| TTGTTTAGAAAGTAAATGGG+TGG | - | chr1_4:30234764-30234783 | Msa0159600:intron | 30.0% | |
| ! | CTATAATTTTTCTTGCAGAG+AGG | - | chr1_4:30234876-30234895 | Msa0159600:intron | 30.0% |
| GTAGTAAAAAAACAAGCAAC+TGG | + | chr1_4:30234949-30234968 | None:intergenic | 30.0% | |
| !!! | GTTGCTTGTTTTTTTACTAC+AGG | - | chr1_4:30234949-30234968 | Msa0159600:intron | 30.0% |
| CATTATTAAACACATCATGC+AGG | + | chr1_4:30235124-30235143 | None:intergenic | 30.0% | |
| CTGCATGATGTGTTTAATAA+TGG | - | chr1_4:30235122-30235141 | Msa0159600:intron | 30.0% | |
| CATGATGTGTTTAATAATGG+TGG | - | chr1_4:30235125-30235144 | Msa0159600:intron | 30.0% | |
| GGTTTGATTCAAGGAATTAA+TGG | - | chr1_4:30235251-30235270 | Msa0159600:intron | 30.0% | |
| TTGATTCAAGGAATTAATGG+GGG | - | chr1_4:30235254-30235273 | Msa0159600:intron | 30.0% | |
| TCAAACTCTCATTCTATGAA+TGG | - | chr1_4:30235401-30235420 | Msa0159600:intron | 30.0% | |
| ! | AACGTTGACTAGTTATGAAT+TGG | + | chr1_4:30235541-30235560 | None:intergenic | 30.0% |
| AATCACTTTATACTTCAACC+AGG | - | chr1_4:30235642-30235661 | Msa0159600:intron | 30.0% | |
| AATGAGAACTTCCTTCAAAA+TGG | - | chr1_4:30235776-30235795 | Msa0159600:intron | 30.0% | |
| ! | TACTTTGTTCTCCATTTTGA+AGG | + | chr1_4:30235790-30235809 | None:intergenic | 30.0% |
| TATTTGTTTATCTTGCTTGC+AGG | - | chr1_4:30236121-30236140 | Msa0159600:intron | 30.0% | |
| ACTATGAAATTCCAACTCTT+CGG | - | chr1_4:30236200-30236219 | Msa0159600:intron | 30.0% | |
| !!! | TTTTTTGTTCTGTGTCCATT+AGG | - | chr1_4:30236334-30236353 | Msa0159600:intron | 30.0% |
| ! | TTTTTGTTCTGTGTCCATTA+GGG | - | chr1_4:30236335-30236354 | Msa0159600:intron | 30.0% |
| ! | GCAATGTTTTTCATTTGATC+AGG | + | chr1_4:30236490-30236509 | None:intergenic | 30.0% |
| GACATCACCATTTGGATAAA+AGG | + | chr1_4:30231774-30231793 | None:intergenic | 35.0% | |
| TATACAAGGACATCACCATT+TGG | + | chr1_4:30231782-30231801 | None:intergenic | 35.0% | |
| TTTGATGTCAGGTGTATACA+AGG | + | chr1_4:30231796-30231815 | None:intergenic | 35.0% | |
| !! | CTAGTTTCAGTTTTGATGTC+AGG | + | chr1_4:30231807-30231826 | None:intergenic | 35.0% |
| CTGACATCAAAACTGAAACT+AGG | - | chr1_4:30231805-30231824 | Msa0159600:three_prime_UTR | 35.0% | |
| AAGGTTTAGCTACCATCAAA+GGG | + | chr1_4:30231836-30231855 | None:intergenic | 35.0% | |
| GTAGCTAAACCTTGAAACTA+GGG | - | chr1_4:30231843-30231862 | Msa0159600:three_prime_UTR | 35.0% | |
| TTGCAAAAACCCTAGTTTCA+AGG | + | chr1_4:30231855-30231874 | None:intergenic | 35.0% | |
| TTAAGATGGTATCAAGAGCT+AGG | + | chr1_4:30231878-30231897 | None:intergenic | 35.0% | |
| CCTATATATCAAAGAGAGAC+GGG | - | chr1_4:30231924-30231943 | Msa0159600:three_prime_UTR | 35.0% | |
| AGAGAGTAGAGTGAATCATA+AGG | + | chr1_4:30232116-30232135 | None:intergenic | 35.0% | |
| ! | GTTCTATGAGATTTTGTACC+TGG | + | chr1_4:30232177-30232196 | None:intergenic | 35.0% |
| TATGAACCCAAAAGAAGTTG+TGG | - | chr1_4:30232213-30232232 | Msa0159600:intron | 35.0% | |
| ! | GAGTTTCCACAACTTCTTTT+GGG | + | chr1_4:30232222-30232241 | None:intergenic | 35.0% |
| ! | AGAGTTTCCACAACTTCTTT+TGG | + | chr1_4:30232223-30232242 | None:intergenic | 35.0% |
| !! | AGTTGATAGAATCTTCGAGA+GGG | - | chr1_4:30232389-30232408 | Msa0159600:intron | 35.0% |
| GAGGATTCCATCATAAATAC+AGG | + | chr1_4:30232446-30232465 | None:intergenic | 35.0% | |
| GTAATCATCGAATCGAAAAC+AGG | + | chr1_4:30232546-30232565 | None:intergenic | 35.0% | |
| CATAAATTCATGCAACGGAT+AGG | + | chr1_4:30232727-30232746 | None:intergenic | 35.0% | |
| ! | TTAGTAATTTGCCTTGAAGG+TGG | + | chr1_4:30232853-30232872 | None:intergenic | 35.0% |
| GTTAGGCGATGAAATGTAAA+TGG | + | chr1_4:30232886-30232905 | None:intergenic | 35.0% | |
| TCCAACATATTTCCTCAAGA+AGG | - | chr1_4:30232967-30232986 | Msa0159600:intron | 35.0% | |
| TCCTTCTTGAGGAAATATGT+TGG | + | chr1_4:30232971-30232990 | None:intergenic | 35.0% | |
| TGAGTCTTACATCAGACTAA+TGG | - | chr1_4:30233030-30233049 | Msa0159600:CDS | 35.0% | |
| ! | AGAAAGTACAAAAGCTGTGT+TGG | + | chr1_4:30233159-30233178 | None:intergenic | 35.0% |
| GAAACTTCGTACCAATATCA+TGG | - | chr1_4:30233326-30233345 | Msa0159600:intron | 35.0% | |
| ACATATTTACAAGGGACGTT+TGG | + | chr1_4:30233380-30233399 | None:intergenic | 35.0% | |
| TTCCTATCTGGATTAAGGTT+TGG | - | chr1_4:30233399-30233418 | Msa0159600:intron | 35.0% | |
| AACCAAACCTTAATCCAGAT+AGG | + | chr1_4:30233404-30233423 | None:intergenic | 35.0% | |
| !! | TTTTCAAGGCCTATTATCTG+AGG | - | chr1_4:30233911-30233930 | Msa0159600:intron | 35.0% |
| AGCAAATAACAGAGTTCAAC+AGG | - | chr1_4:30233947-30233966 | Msa0159600:intron | 35.0% | |
| ATATGTGAACCGTTAGAGTT+AGG | + | chr1_4:30234030-30234049 | None:intergenic | 35.0% | |
| ATATGCAATGTGCTAGGAAA+GGG | + | chr1_4:30234232-30234251 | None:intergenic | 35.0% | |
| TATATGCAATGTGCTAGGAA+AGG | + | chr1_4:30234233-30234252 | None:intergenic | 35.0% | |
| CCAATTATATGCAATGTGCT+AGG | + | chr1_4:30234238-30234257 | None:intergenic | 35.0% | |
| CCTAGCACATTGCATATAAT+TGG | - | chr1_4:30234235-30234254 | Msa0159600:CDS | 35.0% | |
| GTTGCCTCAAGTTAAGTATT+TGG | - | chr1_4:30234351-30234370 | Msa0159600:intron | 35.0% | |
| ATTGCGTACAATACACCAAA+TGG | + | chr1_4:30234474-30234493 | None:intergenic | 35.0% | |
| CAGCCTCTTGTGTAAAATAA+AGG | + | chr1_4:30234502-30234521 | None:intergenic | 35.0% | |
| ATAACCAAGAGATGGATACT+TGG | + | chr1_4:30234582-30234601 | None:intergenic | 35.0% | |
| !! | AATGCCTATTTTGAAGAGTG+TGG | - | chr1_4:30234652-30234671 | Msa0159600:intron | 35.0% |
| TCCTCTTTGAGCTGAAAAAT+CGG | - | chr1_4:30234802-30234821 | Msa0159600:intron | 35.0% | |
| !!! | TTTTGAGATGAAAGCATGCT+TGG | + | chr1_4:30235221-30235240 | None:intergenic | 35.0% |
| TTCATCTCAAAACTCAAGCT+TGG | - | chr1_4:30235229-30235248 | Msa0159600:intron | 35.0% | |
| TCATCTCAAAACTCAAGCTT+GGG | - | chr1_4:30235230-30235249 | Msa0159600:intron | 35.0% | |
| TGATTCAAGGAATTAATGGG+GGG | - | chr1_4:30235255-30235274 | Msa0159600:intron | 35.0% | |
| AAATCAGAACCTGGATATTC+AGG | - | chr1_4:30235284-30235303 | Msa0159600:intron | 35.0% | |
| CAGGACCAAAAATATAAGGA+GGG | + | chr1_4:30235313-30235332 | None:intergenic | 35.0% | |
| TCAGGACCAAAAATATAAGG+AGG | + | chr1_4:30235314-30235333 | None:intergenic | 35.0% | |
| CCATCAGGACCAAAAATATA+AGG | + | chr1_4:30235317-30235336 | None:intergenic | 35.0% | |
| !!! | CCTTATATTTTTGGTCCTGA+TGG | - | chr1_4:30235314-30235333 | Msa0159600:intron | 35.0% |
| ! | TATTTCATCCTTCGGAGTTT+TGG | - | chr1_4:30235442-30235461 | Msa0159600:intron | 35.0% |
| ! | ATTTCATCCTTCGGAGTTTT+GGG | - | chr1_4:30235443-30235462 | Msa0159600:intron | 35.0% |
| GTACATTAGCACTAACAGAT+TGG | - | chr1_4:30235694-30235713 | Msa0159600:intron | 35.0% | |
| ! | ATATAATGGAGAGCTATCCA+AGG | - | chr1_4:30235732-30235751 | Msa0159600:intron | 35.0% |
| ! | TAACAGCATGACATAATGGA+TGG | + | chr1_4:30235863-30235882 | None:intergenic | 35.0% |
| AGCATAACAGCATGACATAA+TGG | + | chr1_4:30235867-30235886 | None:intergenic | 35.0% | |
| ! | AATCGTGCTACTATTCAAAC+TGG | - | chr1_4:30235985-30236004 | Msa0159600:CDS | 35.0% |
| !! | GAAGGTTTGAAGCTTTTCTT+TGG | + | chr1_4:30236040-30236059 | None:intergenic | 35.0% |
| TACCCACAATCTGTAGTAAT+GGG | - | chr1_4:30236246-30236265 | Msa0159600:intron | 35.0% | |
| TTCCCATTACTACAGATTGT+GGG | + | chr1_4:30236251-30236270 | None:intergenic | 35.0% | |
| TTTCCCATTACTACAGATTG+TGG | + | chr1_4:30236252-30236271 | None:intergenic | 35.0% | |
| TTGGATAAAAGGACGCCAAT+CGG | + | chr1_4:30231763-30231782 | None:intergenic | 40.0% | |
| ! | TTGGCGTCCTTTTATCCAAA+TGG | - | chr1_4:30231764-30231783 | Msa0159600:three_prime_UTR | 40.0% |
| AGGTTTAGCTACCATCAAAG+GGG | + | chr1_4:30231835-30231854 | None:intergenic | 40.0% | |
| CAAGGTTTAGCTACCATCAA+AGG | + | chr1_4:30231837-30231856 | None:intergenic | 40.0% | |
| GGTAGCTAAACCTTGAAACT+AGG | - | chr1_4:30231842-30231861 | Msa0159600:three_prime_UTR | 40.0% | |
| CCCGTCTCTCTTTGATATAT+AGG | + | chr1_4:30231927-30231946 | None:intergenic | 40.0% | |
| !! | CTAATCTTTAGGGATTGGCT+AGG | + | chr1_4:30231991-30232010 | None:intergenic | 40.0% |
| CTAGCCAATCCCTAAAGATT+AGG | - | chr1_4:30231989-30232008 | Msa0159600:three_prime_UTR | 40.0% | |
| !! | GTGTTTATTTGGCTCTTTCC+AGG | - | chr1_4:30232156-30232175 | Msa0159600:intron | 40.0% |
| !! | GAGTTGATAGAATCTTCGAG+AGG | - | chr1_4:30232388-30232407 | Msa0159600:intron | 40.0% |
| ! | TCTTTGAGGGTTTGCAACAT+GGG | - | chr1_4:30232621-30232640 | Msa0159600:intron | 40.0% |
| AACTTCGTGCCAACACAAAT+TGG | - | chr1_4:30232815-30232834 | Msa0159600:CDS | 40.0% | |
| ATACATCTTGACCACCTTCA+AGG | - | chr1_4:30232839-30232858 | Msa0159600:CDS | 40.0% | |
| TTTCATCGCCTAACTCATTG+TGG | - | chr1_4:30232892-30232911 | Msa0159600:CDS | 40.0% | |
| TATGTTGGAACTCACAGTTG+AGG | + | chr1_4:30232956-30232975 | None:intergenic | 40.0% | |
| ! | CATTTTGGACATCCTTCTTG+AGG | + | chr1_4:30232982-30233001 | None:intergenic | 40.0% |
| CTCAAGAAGGATGTCCAAAA+TGG | - | chr1_4:30232980-30232999 | Msa0159600:intron | 40.0% | |
| ! | TGGCTTCAACACAACCATTT+TGG | + | chr1_4:30232997-30233016 | None:intergenic | 40.0% |
| !!! | CAGGCTCTGAAATTTTGTCA+TGG | - | chr1_4:30233119-30233138 | Msa0159600:CDS | 40.0% |
| ! | ATGTTCTAGCTACCAACGAT+GGG | - | chr1_4:30233185-30233204 | Msa0159600:intron | 40.0% |
| !! | ATGGGTTGGTCCAATTAGTA+AGG | - | chr1_4:30233203-30233222 | Msa0159600:intron | 40.0% |
| !! | TGGGTTGGTCCAATTAGTAA+GGG | - | chr1_4:30233204-30233223 | Msa0159600:intron | 40.0% |
| GTCCAATTAGTAAGGGACTT+GGG | - | chr1_4:30233211-30233230 | Msa0159600:intron | 40.0% | |
| AAACCTAATAGAGCGAGTCA+AGG | + | chr1_4:30234169-30234188 | None:intergenic | 40.0% | |
| ! | AATGTGCTAGGAAAGGGTAT+GGG | + | chr1_4:30234226-30234245 | None:intergenic | 40.0% |
| TAACTTGAGGCAACACAAAC+AGG | + | chr1_4:30234345-30234364 | None:intergenic | 40.0% | |
| !! | CCTATTTTGAAGAGTGTGGT+GGG | - | chr1_4:30234656-30234675 | Msa0159600:intron | 40.0% |
| TGCAGCATAGTGTAGTGAAA+GGG | + | chr1_4:30234743-30234762 | None:intergenic | 40.0% | |
| TTGCAGCATAGTGTAGTGAA+AGG | + | chr1_4:30234744-30234763 | None:intergenic | 40.0% | |
| !! | ACCGATTTTTCAGCTCAAAG+AGG | + | chr1_4:30234806-30234825 | None:intergenic | 40.0% |
| GGTAATGATAAGCTGGAAAG+TGG | - | chr1_4:30234897-30234916 | Msa0159600:intron | 40.0% | |
| !! | GCATAGCAAGATGGATTTTG+AGG | + | chr1_4:30235041-30235060 | None:intergenic | 40.0% |
| AAGCCAGAAAATATGCGACA+TGG | - | chr1_4:30235086-30235105 | Msa0159600:intron | 40.0% | |
| ! | AGACCATGTCGCATATTTTC+TGG | + | chr1_4:30235092-30235111 | None:intergenic | 40.0% |
| ATTAAACACATCATGCAGGG+TGG | + | chr1_4:30235120-30235139 | None:intergenic | 40.0% | |
| TCAAGCTTGGGTTTGATTCA+AGG | - | chr1_4:30235242-30235261 | Msa0159600:intron | 40.0% | |
| GGGATGATAAAATCAGAACC+TGG | - | chr1_4:30235275-30235294 | Msa0159600:intron | 40.0% | |
| ! | GGTAGCCCTCCTTATATTTT+TGG | - | chr1_4:30235305-30235324 | Msa0159600:intron | 40.0% |
| GACCCAGATATTTCATCCTT+CGG | - | chr1_4:30235434-30235453 | Msa0159600:intron | 40.0% | |
| CTCCGAAGGATGAAATATCT+GGG | + | chr1_4:30235439-30235458 | None:intergenic | 40.0% | |
| ACTCCGAAGGATGAAATATC+TGG | + | chr1_4:30235440-30235459 | None:intergenic | 40.0% | |
| ! | TTTCATCCTTCGGAGTTTTG+GGG | - | chr1_4:30235444-30235463 | Msa0159600:intron | 40.0% |
| AATCAGCTGTCAGATCTGAA+AGG | + | chr1_4:30235490-30235509 | None:intergenic | 40.0% | |
| !! | GCTGATTTTTCTCAGAGTTC+TGG | - | chr1_4:30235503-30235522 | Msa0159600:intron | 40.0% |
| ! | AGTCAACGTTGCATCTGTTT+TGG | - | chr1_4:30235551-30235570 | Msa0159600:intron | 40.0% |
| ACTGATCATCATCACTCATC+AGG | + | chr1_4:30235614-30235633 | None:intergenic | 40.0% | |
| TCATTAGTAGTACCCAGGTA+GGG | + | chr1_4:30235761-30235780 | None:intergenic | 40.0% | |
| AGTTCTCATTAGTAGTACCC+AGG | + | chr1_4:30235766-30235785 | None:intergenic | 40.0% | |
| GATATTCTCTCTTCCTCTCA+AGG | + | chr1_4:30235841-30235860 | None:intergenic | 40.0% | |
| TAAGGCTCGATTTATGACTC+TGG | - | chr1_4:30235926-30235945 | Msa0159600:intron | 40.0% | |
| AAGGCTCGATTTATGACTCT+GGG | - | chr1_4:30235927-30235946 | Msa0159600:intron | 40.0% | |
| TAATAAAGCACAACCTGCCA+AGG | - | chr1_4:30236014-30236033 | Msa0159600:CDS | 40.0% | |
| ! | TTGAAGCTTTTCTTTGGCCT+TGG | + | chr1_4:30236034-30236053 | None:intergenic | 40.0% |
| CTACCCACAATCTGTAGTAA+TGG | - | chr1_4:30236245-30236264 | Msa0159600:intron | 40.0% | |
| TGCAAAGCTATGTACCCTAA+TGG | + | chr1_4:30236352-30236371 | None:intergenic | 40.0% | |
| GCTCAAGCAAAAATTGAGCC+TGG | - | chr1_4:30232247-30232266 | Msa0159600:intron | 45.0% | |
| CTACCAAGTTCGGTAAAACC+AGG | + | chr1_4:30232268-30232287 | None:intergenic | 45.0% | |
| ATGCACAAGGCAGTAAAGCA+GGG | + | chr1_4:30232337-30232356 | None:intergenic | 45.0% | |
| AATGCACAAGGCAGTAAAGC+AGG | + | chr1_4:30232338-30232357 | None:intergenic | 45.0% | |
| ATATGCAATCGCAGCATCAG+AGG | + | chr1_4:30232465-30232484 | None:intergenic | 45.0% | |
| ! | GTCTTTGAGGGTTTGCAACA+TGG | - | chr1_4:30232620-30232639 | Msa0159600:intron | 45.0% |
| ! | TTGTGTTGGCACGAAGTTCA+AGG | + | chr1_4:30232813-30232832 | None:intergenic | 45.0% |
| ! | CATGTTCTAGCTACCAACGA+TGG | - | chr1_4:30233184-30233203 | Msa0159600:CDS | 45.0% |
| TAATTGGACCAACCCATCGT+TGG | + | chr1_4:30233200-30233219 | None:intergenic | 45.0% | |
| GGTCCAATTAGTAAGGGACT+TGG | - | chr1_4:30233210-30233229 | Msa0159600:intron | 45.0% | |
| ! | GGAGATTAGTCACTGCTAAG+CGG | - | chr1_4:30233298-30233317 | Msa0159600:intron | 45.0% |
| CAGCAGCAACCTCAGATAAT+AGG | + | chr1_4:30233923-30233942 | None:intergenic | 45.0% | |
| ! | TTATCTGAGGTTGCTGCTGA+AGG | - | chr1_4:30233924-30233943 | Msa0159600:intron | 45.0% |
| AGAGTTCAACAGGTTGCTGA+AGG | - | chr1_4:30233957-30233976 | Msa0159600:intron | 45.0% | |
| CAACTGCAGTTGATTGTAGC+TGG | + | chr1_4:30233999-30234018 | None:intergenic | 45.0% | |
| CAGCTACAATCAACTGCAGT+TGG | - | chr1_4:30233997-30234016 | Msa0159600:intron | 45.0% | |
| GGTTCGCTACCTAACTCTAA+CGG | - | chr1_4:30234018-30234037 | Msa0159600:intron | 45.0% | |
| ! | GTTCCTTGACTCGCTCTATT+AGG | - | chr1_4:30234163-30234182 | Msa0159600:intron | 45.0% |
| CAATGTGCTAGGAAAGGGTA+TGG | + | chr1_4:30234227-30234246 | None:intergenic | 45.0% | |
| !! | TATGCAGGAGTTTTGTGCCT+GGG | + | chr1_4:30234427-30234446 | None:intergenic | 45.0% |
| ACAAAACTCCTGCATACGCA+AGG | - | chr1_4:30234431-30234450 | Msa0159600:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_4:30234471-30234490 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_4:30234507-30234526 | Msa0159600:intron | 45.0% |
| GTTGTTGTCACGTGACTGAA+AGG | + | chr1_4:30234547-30234566 | None:intergenic | 45.0% | |
| !! | GCCTATTTTGAAGAGTGTGG+TGG | - | chr1_4:30234655-30234674 | Msa0159600:intron | 45.0% |
| CCCACCACACTCTTCAAAAT+AGG | + | chr1_4:30234659-30234678 | None:intergenic | 45.0% | |
| ! | TTTGAAGAGTGTGGTGGGAT+TGG | - | chr1_4:30234661-30234680 | Msa0159600:intron | 45.0% |
| AGCATAGTGTAGTGAAAGGG+AGG | + | chr1_4:30234740-30234759 | None:intergenic | 45.0% | |
| GCAGAGAGGTAATGATAAGC+TGG | - | chr1_4:30234890-30234909 | Msa0159600:intron | 45.0% | |
| AAGCAACTGGATTGCACACT+CGG | + | chr1_4:30234936-30234955 | None:intergenic | 45.0% | |
| GAATACTAGGGTACGCGATT+TGG | - | chr1_4:30235157-30235176 | Msa0159600:intron | 45.0% | |
| ! | GAGATGAAAGCATGCTTGGT+GGG | + | chr1_4:30235217-30235236 | None:intergenic | 45.0% |
| ! | TGAGATGAAAGCATGCTTGG+TGG | + | chr1_4:30235218-30235237 | None:intergenic | 45.0% |
| ! | TTGGAAGCATGCCCAACTAT+TGG | - | chr1_4:30235344-30235363 | Msa0159600:intron | 45.0% |
| CTGCTGCATCACCAATAGTT+GGG | + | chr1_4:30235358-30235377 | None:intergenic | 45.0% | |
| ACTGCTGCATCACCAATAGT+TGG | + | chr1_4:30235359-30235378 | None:intergenic | 45.0% | |
| ! | TTCTATGAATGGAGCACTCC+TGG | - | chr1_4:30235412-30235431 | Msa0159600:intron | 45.0% |
| AGGATGAAATATCTGGGTCC+AGG | + | chr1_4:30235433-30235452 | None:intergenic | 45.0% | |
| !!! | ACGTTGCATCTGTTTTGGTG+TGG | - | chr1_4:30235556-30235575 | Msa0159600:intron | 45.0% |
| CTCATTAGTAGTACCCAGGT+AGG | + | chr1_4:30235762-30235781 | None:intergenic | 45.0% | |
| TCAAGGTTGGACAGGAAAGA+GGG | + | chr1_4:30235824-30235843 | None:intergenic | 45.0% | |
| TTCTCTCTTCCTCTCAAGGT+TGG | + | chr1_4:30235837-30235856 | None:intergenic | 45.0% | |
| TCTTCGGTGAACGTGTGTAT+AGG | - | chr1_4:30236216-30236235 | Msa0159600:intron | 45.0% | |
| TGTGAGACATCCTCCAGTGT+TGG | - | chr1_4:30231723-30231742 | Msa0159600:three_prime_UTR | 50.0% | |
| AACTAGGAGAGCCCCTTTGA+TGG | - | chr1_4:30231821-30231840 | Msa0159600:three_prime_UTR | 50.0% | |
| !!! | GAGCCTGGTTTTACCGAACT+TGG | - | chr1_4:30232262-30232281 | Msa0159600:intron | 50.0% |
| TGCACAAGGCAGTAAAGCAG+GGG | + | chr1_4:30232336-30232355 | None:intergenic | 50.0% | |
| GGATAGGCACAACATGGACA+CGG | + | chr1_4:30232711-30232730 | None:intergenic | 50.0% | |
| TGCAACGGATAGGCACAACA+TGG | + | chr1_4:30232717-30232736 | None:intergenic | 50.0% | |
| TCTAGCTACCAACGATGGGT+TGG | - | chr1_4:30233189-30233208 | Msa0159600:intron | 50.0% | |
| GGCCCAAGTCCCTTACTAAT+TGG | + | chr1_4:30233216-30233235 | None:intergenic | 50.0% | |
| ACCCCTGACCACATGCTTAA+GGG | + | chr1_4:30233238-30233257 | None:intergenic | 50.0% | |
| AACCCCTGACCACATGCTTA+AGG | + | chr1_4:30233239-30233258 | None:intergenic | 50.0% | |
| ! | GGAAAGGGTATGGGAAAGGT+CGG | + | chr1_4:30234217-30234236 | None:intergenic | 50.0% |
| ! | GCTAGGAAAGGGTATGGGAA+AGG | + | chr1_4:30234221-30234240 | None:intergenic | 50.0% |
| TGGGTATAAAAGAGCAGCCC+AGG | - | chr1_4:30234407-30234426 | Msa0159600:intron | 50.0% | |
| !! | GTATGCAGGAGTTTTGTGCC+TGG | + | chr1_4:30234428-30234447 | None:intergenic | 50.0% |
| TCACGTGACTGAAAGGTCAC+GGG | + | chr1_4:30234540-30234559 | None:intergenic | 50.0% | |
| GTCACGTGACTGAAAGGTCA+CGG | + | chr1_4:30234541-30234560 | None:intergenic | 50.0% | |
| GAGATGGATACTTGGCGCAA+TGG | + | chr1_4:30234574-30234593 | None:intergenic | 50.0% | |
| TGCGCCAAGTATCCATCTCT+TGG | - | chr1_4:30234575-30234594 | Msa0159600:intron | 50.0% | |
| TGCTCAGCAGCATAGCAAGA+TGG | + | chr1_4:30235050-30235069 | None:intergenic | 50.0% | |
| TGGGTCGTCGCTGAATACTA+GGG | - | chr1_4:30235145-30235164 | Msa0159600:intron | 50.0% | |
| AGATGTCTGCTCGTGGCAAT+AGG | - | chr1_4:30235183-30235202 | Msa0159600:intron | 50.0% | |
| AATCTGCCCCAAAACTCCGA+AGG | + | chr1_4:30235453-30235472 | None:intergenic | 50.0% | |
| CTGTCAGATCTGAAAGGCTG+AGG | + | chr1_4:30235484-30235503 | None:intergenic | 50.0% | |
| ! | TATCCAAGGTGTCCCTACCT+GGG | - | chr1_4:30235746-30235765 | Msa0159600:intron | 50.0% |
| CTCAAGGTTGGACAGGAAAG+AGG | + | chr1_4:30235825-30235844 | None:intergenic | 50.0% | |
| CTTTCCTGTCCAACCTTGAG+AGG | - | chr1_4:30235825-30235844 | Msa0159600:intron | 50.0% | |
| TCTTCCTCTCAAGGTTGGAC+AGG | + | chr1_4:30235832-30235851 | None:intergenic | 50.0% | |
| !!! | AGCTTTTCTTTGGCCTTGGC+AGG | + | chr1_4:30236030-30236049 | None:intergenic | 50.0% |
| ACACACGTTCACCGAAGAGT+TGG | + | chr1_4:30236214-30236233 | None:intergenic | 50.0% | |
| !! | ATCCTCCAGTGTTGGCGCTT+AGG | - | chr1_4:30231731-30231750 | Msa0159600:three_prime_UTR | 55.0% |
| !! | TCCTCCAGTGTTGGCGCTTA+GGG | - | chr1_4:30231732-30231751 | Msa0159600:three_prime_UTR | 55.0% |
| ACTTGGGCCCCTTAAGCATG+TGG | - | chr1_4:30233227-30233246 | Msa0159600:intron | 55.0% | |
| GCCCCTTAAGCATGTGGTCA+GGG | - | chr1_4:30233233-30233252 | Msa0159600:intron | 55.0% | |
| CCCCTGACCACATGCTTAAG+GGG | + | chr1_4:30233237-30233256 | None:intergenic | 55.0% | |
| CCCCTTAAGCATGTGGTCAG+GGG | - | chr1_4:30233234-30233253 | Msa0159600:intron | 55.0% | |
| TAATCTCCGTCGCACCTGTG+GGG | + | chr1_4:30233286-30233305 | None:intergenic | 55.0% | |
| CTAATCTCCGTCGCACCTGT+GGG | + | chr1_4:30233287-30233306 | None:intergenic | 55.0% | |
| ACTAATCTCCGTCGCACCTG+TGG | + | chr1_4:30233288-30233307 | None:intergenic | 55.0% | |
| TAGTCACTGCTAAGCGGCAG+TGG | - | chr1_4:30233304-30233323 | Msa0159600:intron | 55.0% | |
| ACTCCTGCATACGCAAGGTC+CGG | - | chr1_4:30234436-30234455 | Msa0159600:intron | 55.0% | |
| ! | CAAATGGTGGAACCCCTTCC+CGG | + | chr1_4:30234458-30234477 | None:intergenic | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1_4:30234528-30234547 | None:intergenic | 55.0% | |
| !! | TTCTGGCTTCACAGCTGCAC+TGG | + | chr1_4:30235075-30235094 | None:intergenic | 55.0% |
| GTGGGTCGTCGCTGAATACT+AGG | - | chr1_4:30235144-30235163 | Msa0159600:intron | 55.0% | |
| TTGGCTCAGATGTCTGCTCG+TGG | - | chr1_4:30235176-30235195 | Msa0159600:intron | 55.0% | |
| GGAGGGCTACCTGAATATCC+AGG | + | chr1_4:30235296-30235315 | None:intergenic | 55.0% | |
| TGGTCCTGATGGCACTGTCT+TGG | - | chr1_4:30235325-30235344 | Msa0159600:intron | 55.0% | |
| GCTTCCAAGACAGTGCCATC+AGG | + | chr1_4:30235332-30235351 | None:intergenic | 55.0% | |
| ! | CTATCCAAGGTGTCCCTACC+TGG | - | chr1_4:30235745-30235764 | Msa0159600:intron | 55.0% |
| CATGCCCTAAGCGCCAACAC+TGG | + | chr1_4:30231739-30231758 | None:intergenic | 60.0% | |
| !! | CAGTGTTGGCGCTTAGGGCA+TGG | - | chr1_4:30231737-30231756 | Msa0159600:three_prime_UTR | 60.0% |
| GGCCCCTTAAGCATGTGGTC+AGG | - | chr1_4:30233232-30233251 | Msa0159600:intron | 60.0% | |
| ACCTGTGGGGCACACAAGGT+GGG | + | chr1_4:30233273-30233292 | None:intergenic | 60.0% | |
| GGGTATGGGAAAGGTCGGCT+GGG | + | chr1_4:30234212-30234231 | None:intergenic | 60.0% | |
| AGGGTATGGGAAAGGTCGGC+TGG | + | chr1_4:30234213-30234232 | None:intergenic | 60.0% | |
| CTCCTGCATACGCAAGGTCC+GGG | - | chr1_4:30234437-30234456 | Msa0159600:intron | 60.0% | |
| TTCCCGGACCTTGCGTATGC+AGG | + | chr1_4:30234442-30234461 | None:intergenic | 60.0% | |
| TGCATACGCAAGGTCCGGGA+AGG | - | chr1_4:30234441-30234460 | Msa0159600:intron | 60.0% | |
| GCATACGCAAGGTCCGGGAA+GGG | - | chr1_4:30234442-30234461 | Msa0159600:intron | 60.0% | |
| CATACGCAAGGTCCGGGAAG+GGG | - | chr1_4:30234443-30234462 | Msa0159600:intron | 60.0% | |
| CGGGAAGGGGTTCCACCATT+TGG | - | chr1_4:30234456-30234475 | Msa0159600:intron | 60.0% | |
| GTACCCAGGTAGGGACACCT+TGG | + | chr1_4:30235752-30235771 | None:intergenic | 60.0% | |
| GCCCTAAGCGCCAACACTGG+AGG | + | chr1_4:30231736-30231755 | None:intergenic | 65.0% | |
| GCGCTTAGGGCATGGCCGAT+TGG | - | chr1_4:30231745-30231764 | Msa0159600:three_prime_UTR | 65.0% | |
| ! | GGGGCACACAAGGTGGGTTC+AGG | + | chr1_4:30233267-30233286 | None:intergenic | 65.0% |
| ACCCACCTTGTGTGCCCCAC+AGG | - | chr1_4:30233269-30233288 | Msa0159600:intron | 65.0% | |
| CACCTGTGGGGCACACAAGG+TGG | + | chr1_4:30233274-30233293 | None:intergenic | 65.0% | |
| TCGCACCTGTGGGGCACACA+AGG | + | chr1_4:30233277-30233296 | None:intergenic | 65.0% | |
| TGTGTGCCCCACAGGTGCGA+CGG | - | chr1_4:30233277-30233296 | Msa0159600:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 30231714 | 30236525 | 30231714 | ID=Msa0159600;Name=Msa0159600 |
| chr1_4 | mRNA | 30231714 | 30236525 | 30231714 | ID=Msa0159600-mRNA-1;Parent=Msa0159600;Name=Msa0159600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.33|0.28|0.85|0|0|7|378|263 |
| chr1_4 | exon | 30231714 | 30232096 | 30231714 | ID=Msa0159600-mRNA-1:exon:9774;Parent=Msa0159600-mRNA-1 |
| chr1_4 | exon | 30232433 | 30232507 | 30232433 | ID=Msa0159600-mRNA-1:exon:9773;Parent=Msa0159600-mRNA-1 |
| chr1_4 | exon | 30232715 | 30232933 | 30232715 | ID=Msa0159600-mRNA-1:exon:9772;Parent=Msa0159600-mRNA-1 |
| chr1_4 | exon | 30232988 | 30233203 | 30232988 | ID=Msa0159600-mRNA-1:exon:9771;Parent=Msa0159600-mRNA-1 |
| chr1_4 | exon | 30234200 | 30234361 | 30234200 | ID=Msa0159600-mRNA-1:exon:9770;Parent=Msa0159600-mRNA-1 |
| chr1_4 | exon | 30235953 | 30236061 | 30235953 | ID=Msa0159600-mRNA-1:exon:9769;Parent=Msa0159600-mRNA-1 |
| chr1_4 | exon | 30236520 | 30236525 | 30236520 | ID=Msa0159600-mRNA-1:exon:9768;Parent=Msa0159600-mRNA-1 |
| chr1_4 | CDS | 30236520 | 30236525 | 30236520 | ID=Msa0159600-mRNA-1:cds;Parent=Msa0159600-mRNA-1 |
| chr1_4 | CDS | 30235953 | 30236061 | 30235953 | ID=Msa0159600-mRNA-1:cds;Parent=Msa0159600-mRNA-1 |
| chr1_4 | CDS | 30234200 | 30234361 | 30234200 | ID=Msa0159600-mRNA-1:cds;Parent=Msa0159600-mRNA-1 |
| chr1_4 | CDS | 30232988 | 30233203 | 30232988 | ID=Msa0159600-mRNA-1:cds;Parent=Msa0159600-mRNA-1 |
| chr1_4 | CDS | 30232715 | 30232933 | 30232715 | ID=Msa0159600-mRNA-1:cds;Parent=Msa0159600-mRNA-1 |
| chr1_4 | CDS | 30232433 | 30232507 | 30232433 | ID=Msa0159600-mRNA-1:cds;Parent=Msa0159600-mRNA-1 |
| chr1_4 | CDS | 30232092 | 30232096 | 30232092 | ID=Msa0159600-mRNA-1:cds;Parent=Msa0159600-mRNA-1 |
| chr1_4 | three_prime_UTR | 30231714 | 30232091 | 30231714 | ID=Msa0159600-mRNA-1:three_prime_utr;Parent=Msa0159600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
