Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160410 | XP_013467539.1 | 82.544 | 338 | 17 | 6 | 2 | 301 | 4 | 337 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160410 | sp|Q66GR3|BH130_ARATH | 40.173 | 346 | 134 | 7 | 1 | 301 | 1 | 318 | 2.18e-65 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160410 | A0A072VIY5 | 82.544 | 338 | 17 | 6 | 2 | 301 | 4 | 337 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0160400 | Msa0160410 | 0.882955 | 6.748453e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160410 | MtrunA17_Chr1g0174271 | 82.544 | 338 | 17 | 6 | 2 | 301 | 4 | 337 | 0.0 | 537 |
| Msa0160410 | MtrunA17_Chr2g0329041 | 37.859 | 383 | 144 | 14 | 1 | 301 | 1 | 371 | 7.28e-56 | 186 |
| Msa0160410 | MtrunA17_Chr4g0032951 | 44.395 | 223 | 83 | 9 | 115 | 301 | 177 | 394 | 1.65e-45 | 159 |
| Msa0160410 | MtrunA17_Chr7g0258181 | 38.369 | 331 | 125 | 11 | 1 | 301 | 1 | 282 | 8.11e-45 | 154 |
| Msa0160410 | MtrunA17_Chr3g0087771 | 33.521 | 355 | 163 | 14 | 5 | 301 | 22 | 361 | 1.66e-36 | 134 |
| Msa0160410 | MtrunA17_Chr8g0351881 | 35.103 | 339 | 161 | 10 | 7 | 301 | 32 | 355 | 8.85e-31 | 119 |
| Msa0160410 | MtrunA17_Chr4g0014771 | 78.571 | 56 | 10 | 1 | 246 | 301 | 104 | 157 | 1.10e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160410 | AT2G42280.3 | 40.173 | 346 | 134 | 7 | 1 | 301 | 1 | 318 | 1.45e-66 | 212 |
| Msa0160410 | AT2G42280.1 | 40.173 | 346 | 134 | 7 | 1 | 301 | 1 | 318 | 2.22e-66 | 212 |
| Msa0160410 | AT2G42280.2 | 36.420 | 324 | 133 | 7 | 1 | 279 | 1 | 296 | 1.23e-49 | 167 |
| Msa0160410 | AT1G51140.1 | 33.237 | 346 | 161 | 13 | 8 | 301 | 16 | 343 | 8.54e-32 | 122 |
| Msa0160410 | AT2G43140.1 | 68.056 | 72 | 22 | 1 | 231 | 301 | 102 | 173 | 1.70e-25 | 101 |
| Msa0160410 | AT2G43140.2 | 68.056 | 72 | 22 | 1 | 231 | 301 | 199 | 270 | 4.86e-25 | 102 |
| Msa0160410 | AT1G35460.1 | 79.630 | 54 | 9 | 1 | 248 | 301 | 169 | 220 | 2.41e-24 | 99.8 |
| Msa0160410 | AT1G05805.1 | 69.014 | 71 | 20 | 2 | 232 | 301 | 253 | 322 | 3.94e-24 | 100 |
| Msa0160410 | AT1G35460.2 | 79.245 | 53 | 9 | 1 | 248 | 300 | 169 | 219 | 5.68e-24 | 97.8 |
| Msa0160410 | AT4G09180.1 | 77.778 | 54 | 10 | 1 | 248 | 301 | 172 | 223 | 8.75e-21 | 90.1 |
Find 154 sgRNAs with CRISPR-Local
Find 446 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGATAATAATAATATTTC+TGG | 0.136535 | 1_4:+32718616 | Msa0160410:CDS |
| AACGATAATAATAATATTTC+TGG | 0.136535 | 1_4:+32721549 | Msa0160410:three_prime_UTR |
| CCAATAGTATTTATTTATAT+TGG | 0.203913 | 1_4:+32724779 | Msa0160410:three_prime_UTR |
| GACCTACATGCTTTGTATTC+AGG | 0.204114 | 1_4:-32724697 | None:intergenic |
| TCTGCTATGGATGGTTCTTT+TGG | 0.221242 | 1_4:+32718727 | Msa0160410:CDS |
| TCTGCTATGGATGGTTCTTT+TGG | 0.221242 | 1_4:+32721660 | Msa0160410:three_prime_UTR |
| TTATTTATATTTACATATAA+TGG | 0.227676 | 1_4:+32721353 | Msa0160410:three_prime_UTR |
| CACAACCAATCCAATTCTTC+TGG | 0.235104 | 1_4:+32718463 | Msa0160410:CDS |
| CACAACCAATCCAATTCTTC+TGG | 0.235104 | 1_4:+32721396 | Msa0160410:three_prime_UTR |
| ATTAAGAGTAGAATATTTAT+TGG | 0.243890 | 1_4:-32724822 | None:intergenic |
| GGAAACTATGCCACGGTAAA+TGG | 0.245415 | 1_4:+32722934 | Msa0160410:three_prime_UTR |
| AAAGATAGGGATAAATAAAA+AGG | 0.251395 | 1_4:-32721092 | None:intergenic |
| TGTTCTAAGGAAATGAATTC+TGG | 0.257572 | 1_4:+32718646 | Msa0160410:CDS |
| TGTTCTAAGGAAATGAATTC+TGG | 0.257572 | 1_4:+32721579 | Msa0160410:three_prime_UTR |
| TCCAACATTTCCTTTCAAAA+TGG | 0.262412 | 1_4:+32721780 | Msa0160410:three_prime_UTR |
| CTGGATTCCCCTATAGTTCT+TGG | 0.264196 | 1_4:+32720200 | Msa0160410:CDS |
| CTGGATTCCCCTATAGTTCT+TGG | 0.264196 | 1_4:+32723133 | Msa0160410:three_prime_UTR |
| TTCTGGTTCATCTTGTTCTA+AGG | 0.264253 | 1_4:+32718633 | Msa0160410:CDS |
| TTCTGGTTCATCTTGTTCTA+AGG | 0.264253 | 1_4:+32721566 | Msa0160410:three_prime_UTR |
| CCAATATAAATAAATACTAT+TGG | 0.311806 | 1_4:-32724779 | None:intergenic |
| ACATCACATGATAAGAGTTT+TGG | 0.326645 | 1_4:+32718781 | Msa0160410:CDS |
| ACATCACATGATAAGAGTTT+TGG | 0.326645 | 1_4:+32721714 | Msa0160410:three_prime_UTR |
| ATTTGTACCTTATCCATGTT+TGG | 0.331656 | 1_4:-32720812 | None:intergenic |
| ATTTGTACCTTATCCATGTT+TGG | 0.331656 | 1_4:-32723745 | None:intergenic |
| ATAGTTTCCAACGCCTTTAA+TGG | 0.333174 | 1_4:-32719987 | None:intergenic |
| ATAGTTTCCAACGCCTTTAA+TGG | 0.333174 | 1_4:-32722920 | None:intergenic |
| TTTGGATTGGTTGGTTCATT+GGG | 0.337311 | 1_4:+32718745 | Msa0160410:CDS |
| TTTGGATTGGTTGGTTCATT+GGG | 0.337311 | 1_4:+32721678 | Msa0160410:three_prime_UTR |
| AGTATCGTTCCAAGAACTAT+AGG | 0.348915 | 1_4:-32720209 | None:intergenic |
| AGTATCGTTCCAAGAACTAT+AGG | 0.348915 | 1_4:-32723142 | None:intergenic |
| TGAAAGGGACAAGGAAAGAT+AGG | 0.351902 | 1_4:-32721106 | None:intergenic |
| TCAAGAAATGCTTCTTCCTT+GGG | 0.356423 | 1_4:+32720082 | Msa0160410:CDS |
| TCAAGAAATGCTTCTTCCTT+GGG | 0.356423 | 1_4:+32723015 | Msa0160410:three_prime_UTR |
| ACGAAGCAACCCAGAAGAAT+TGG | 0.359803 | 1_4:-32718473 | None:intergenic |
| ACGAAGCAACCCAGAAGAAT+TGG | 0.359803 | 1_4:-32721406 | None:intergenic |
| TTCAAGAAATGCTTCTTCCT+TGG | 0.367694 | 1_4:+32720081 | Msa0160410:CDS |
| TTCAAGAAATGCTTCTTCCT+TGG | 0.367694 | 1_4:+32723014 | Msa0160410:three_prime_UTR |
| CCGTTGCTACCTCCGTCATC+AGG | 0.377114 | 1_4:-32720157 | None:intergenic |
| CCGTTGCTACCTCCGTCATC+AGG | 0.377114 | 1_4:-32723090 | None:intergenic |
| ACTCATCAGCGTGGAGGGCT+TGG | 0.396464 | 1_4:+32720388 | Msa0160410:intron |
| ACTCATCAGCGTGGAGGGCT+TGG | 0.396464 | 1_4:+32723321 | Msa0160410:intron |
| GTTTGCTCGTTTATCACTTA+GGG | 0.399495 | 1_4:-32724555 | None:intergenic |
| GTATCGTTCCAAGAACTATA+GGG | 0.399539 | 1_4:-32720208 | None:intergenic |
| GTATCGTTCCAAGAACTATA+GGG | 0.399539 | 1_4:-32723141 | None:intergenic |
| ATGAATTCTGGTTATGCTGC+TGG | 0.416060 | 1_4:+32718658 | Msa0160410:CDS |
| ATGAATTCTGGTTATGCTGC+TGG | 0.416060 | 1_4:+32721591 | Msa0160410:three_prime_UTR |
| ATTGGTTGGTTCATTGGGAA+TGG | 0.419938 | 1_4:+32718750 | Msa0160410:CDS |
| ATTGGTTGGTTCATTGGGAA+TGG | 0.419938 | 1_4:+32721683 | Msa0160410:three_prime_UTR |
| AGGTCCTCACCACAGCAAAA+AGG | 0.421052 | 1_4:+32724715 | Msa0160410:three_prime_UTR |
| CATTATCCTAGACATGGTTC+TGG | 0.422292 | 1_4:+32718691 | Msa0160410:CDS |
| CATTATCCTAGACATGGTTC+TGG | 0.422292 | 1_4:+32721624 | Msa0160410:three_prime_UTR |
| TGGTTCAAATCTTCTTAGAC+AGG | 0.423641 | 1_4:+32718801 | Msa0160410:CDS |
| TGGTTCAAATCTTCTTAGAC+AGG | 0.423641 | 1_4:+32721734 | Msa0160410:three_prime_UTR |
| ACCTACATGCTTTGTATTCA+GGG | 0.435275 | 1_4:-32724696 | None:intergenic |
| TTCTACTTCAAGTTCTGCTA+TGG | 0.441169 | 1_4:+32718714 | Msa0160410:CDS |
| TTCTACTTCAAGTTCTGCTA+TGG | 0.441169 | 1_4:+32721647 | Msa0160410:three_prime_UTR |
| AACGGTGATTCTACTCACTA+TGG | 0.453244 | 1_4:+32720175 | Msa0160410:CDS |
| AACGGTGATTCTACTCACTA+TGG | 0.453244 | 1_4:+32723108 | Msa0160410:three_prime_UTR |
| AGTTTGCTCGTTTATCACTT+AGG | 0.455813 | 1_4:-32724556 | None:intergenic |
| ACAACCAATCCAATTCTTCT+GGG | 0.461387 | 1_4:+32718464 | Msa0160410:CDS |
| ACAACCAATCCAATTCTTCT+GGG | 0.461387 | 1_4:+32721397 | Msa0160410:three_prime_UTR |
| GATTCTACTCACTATGGCTC+TGG | 0.464368 | 1_4:+32720181 | Msa0160410:CDS |
| GATTCTACTCACTATGGCTC+TGG | 0.464368 | 1_4:+32723114 | Msa0160410:three_prime_UTR |
| ACCCTCTCGGCAATGCTTCG+AGG | 0.468775 | 1_4:-32720547 | None:intergenic |
| ACCCTCTCGGCAATGCTTCG+AGG | 0.468775 | 1_4:-32723480 | None:intergenic |
| ATCATCTCAGATGAAGTGTT+TGG | 0.470848 | 1_4:-32720448 | None:intergenic |
| ATCATCTCAGATGAAGTGTT+TGG | 0.470848 | 1_4:-32723381 | None:intergenic |
| ACTTCAAGTTCTGCTATGGA+TGG | 0.477883 | 1_4:+32718718 | Msa0160410:CDS |
| ACTTCAAGTTCTGCTATGGA+TGG | 0.477883 | 1_4:+32721651 | Msa0160410:three_prime_UTR |
| AAGGAAGAAGCATTTCTTGA+AGG | 0.479751 | 1_4:-32720079 | None:intergenic |
| AAGGAAGAAGCATTTCTTGA+AGG | 0.479751 | 1_4:-32723012 | None:intergenic |
| TCCTCGAAGCATTGCCGAGA+GGG | 0.481258 | 1_4:+32720546 | Msa0160410:CDS |
| TCCTCGAAGCATTGCCGAGA+GGG | 0.481258 | 1_4:+32723479 | Msa0160410:three_prime_UTR |
| GCTTGTTCCAAACATGGATA+AGG | 0.495622 | 1_4:+32720805 | Msa0160410:CDS |
| GCTTGTTCCAAACATGGATA+AGG | 0.495622 | 1_4:+32723738 | Msa0160410:three_prime_UTR |
| TCACCAGAAGAAGGAAAAGA+AGG | 0.496661 | 1_4:-32718535 | None:intergenic |
| TCACCAGAAGAAGGAAAAGA+AGG | 0.496661 | 1_4:-32721468 | None:intergenic |
| CAGAGAGAGATCAAGTGAAA+GGG | 0.497536 | 1_4:-32721121 | None:intergenic |
| AGGAAGAAGCATTTCTTGAA+GGG | 0.507126 | 1_4:-32720078 | None:intergenic |
| AGGAAGAAGCATTTCTTGAA+GGG | 0.507126 | 1_4:-32723011 | None:intergenic |
| TTTCAGCTTAGGAACAAAGC+AGG | 0.511021 | 1_4:-32721264 | None:intergenic |
| CACATCAGACATGTTGGACT+TGG | 0.512180 | 1_4:+32723877 | Msa0160410:three_prime_UTR |
| ATGTTGGAGAAAAGACCAGC+AGG | 0.517169 | 1_4:-32721765 | None:intergenic |
| ATCTCAGTGGTTTGAAAAGA+GGG | 0.517303 | 1_4:+32720248 | Msa0160410:CDS |
| ATCTCAGTGGTTTGAAAAGA+GGG | 0.517303 | 1_4:+32723181 | Msa0160410:three_prime_UTR |
| ACAGAGAGAGATCAAGTGAA+AGG | 0.517989 | 1_4:-32721122 | None:intergenic |
| TTCAGCTTAGGAACAAAGCA+GGG | 0.518265 | 1_4:-32721263 | None:intergenic |
| AATCTCAGTGGTTTGAAAAG+AGG | 0.526692 | 1_4:+32720247 | Msa0160410:CDS |
| AATCTCAGTGGTTTGAAAAG+AGG | 0.526692 | 1_4:+32723180 | Msa0160410:three_prime_UTR |
| AGGTAACCTGAGTGTTCAAT+CGG | 0.530212 | 1_4:-32722987 | None:intergenic |
| TTATTAGAATCACCAGAAGA+AGG | 0.532913 | 1_4:-32718544 | None:intergenic |
| TTATTAGAATCACCAGAAGA+AGG | 0.532913 | 1_4:-32721477 | None:intergenic |
| AGAAGCATTTCTTGAAGGGA+AGG | 0.535438 | 1_4:-32720074 | None:intergenic |
| AGAAGCATTTCTTGAAGGGA+AGG | 0.535438 | 1_4:-32723007 | None:intergenic |
| GAAAGGGACAAGGAAAGATA+GGG | 0.536386 | 1_4:-32721105 | None:intergenic |
| GCAACCCAGAAGAATTGGAT+TGG | 0.541202 | 1_4:-32718468 | None:intergenic |
| GCAACCCAGAAGAATTGGAT+TGG | 0.541202 | 1_4:-32721401 | None:intergenic |
| AGACAGGGTAGTTCCCCTGC+TGG | 0.543236 | 1_4:+32718817 | Msa0160410:CDS |
| AGACAGGGTAGTTCCCCTGC+TGG | 0.543236 | 1_4:+32721750 | Msa0160410:three_prime_UTR |
| AACTAACACATCAGACATGT+TGG | 0.546138 | 1_4:+32723871 | Msa0160410:three_prime_UTR |
| AAGAAGAGAAGAGGTGGCTA+TGG | 0.548362 | 1_4:-32721173 | None:intergenic |
| GCAAGAGCTTGTTCCAAACA+TGG | 0.548846 | 1_4:+32720799 | Msa0160410:CDS |
| GCAAGAGCTTGTTCCAAACA+TGG | 0.548846 | 1_4:+32723732 | Msa0160410:three_prime_UTR |
| CCACCTCATTATCCTAGACA+TGG | 0.549227 | 1_4:+32718685 | Msa0160410:CDS |
| CCACCTCATTATCCTAGACA+TGG | 0.549227 | 1_4:+32721618 | Msa0160410:three_prime_UTR |
| TGTAAAATTCGAGCGAAACG+AGG | 0.565652 | 1_4:+32720511 | Msa0160410:CDS |
| TGTAAAATTCGAGCGAAACG+AGG | 0.565652 | 1_4:+32723444 | Msa0160410:three_prime_UTR |
| TTCATCTGAGATGATTGCTA+TGG | 0.566845 | 1_4:+32720456 | Msa0160410:CDS |
| TTCATCTGAGATGATTGCTA+TGG | 0.566845 | 1_4:+32723389 | Msa0160410:three_prime_UTR |
| CGTTGCTACCTCCGTCATCA+GGG | 0.572371 | 1_4:-32720156 | None:intergenic |
| CGTTGCTACCTCCGTCATCA+GGG | 0.572371 | 1_4:-32723089 | None:intergenic |
| GAGCAAACTGCAAATGTATG+AGG | 0.578835 | 1_4:+32724570 | Msa0160410:three_prime_UTR |
| CGCAATTCAAAGAAGAGAAG+AGG | 0.583762 | 1_4:-32721182 | None:intergenic |
| GTAGAACCAGAACCATGTCT+AGG | 0.597203 | 1_4:-32718697 | None:intergenic |
| GTAGAACCAGAACCATGTCT+AGG | 0.597203 | 1_4:-32721630 | None:intergenic |
| GAACCATGTCTAGGATAATG+AGG | 0.601649 | 1_4:-32718688 | None:intergenic |
| GAACCATGTCTAGGATAATG+AGG | 0.601649 | 1_4:-32721621 | None:intergenic |
| TAAACAAAACCATACCCTCT+CGG | 0.609076 | 1_4:-32720560 | None:intergenic |
| TAAACAAAACCATACCCTCT+CGG | 0.609076 | 1_4:-32723493 | None:intergenic |
| GCCACGGTAAATGGTAGTAA+CGG | 0.609242 | 1_4:+32722943 | Msa0160410:three_prime_UTR |
| GAGATCAAGTGAAAGGGACA+AGG | 0.614591 | 1_4:-32721115 | None:intergenic |
| CCTGATGACGGAGGTAGCAA+CGG | 0.614696 | 1_4:+32720157 | Msa0160410:CDS |
| CCTGATGACGGAGGTAGCAA+CGG | 0.614696 | 1_4:+32723090 | Msa0160410:three_prime_UTR |
| TATCGTTCCAAGAACTATAG+GGG | 0.622302 | 1_4:-32720207 | None:intergenic |
| TATCGTTCCAAGAACTATAG+GGG | 0.622302 | 1_4:-32723140 | None:intergenic |
| GGTTCAAATCTTCTTAGACA+GGG | 0.631058 | 1_4:+32718802 | Msa0160410:CDS |
| GGTTCAAATCTTCTTAGACA+GGG | 0.631058 | 1_4:+32721735 | Msa0160410:three_prime_UTR |
| GCCGTTACTACCATTTACCG+TGG | 0.637465 | 1_4:-32722944 | None:intergenic |
| GAAGCAACTAGCCCTGATGA+CGG | 0.637823 | 1_4:+32720145 | Msa0160410:CDS |
| GAAGCAACTAGCCCTGATGA+CGG | 0.637823 | 1_4:+32723078 | Msa0160410:three_prime_UTR |
| TATCTCTGAAATAGATAGCG+AGG | 0.637851 | 1_4:+32720117 | Msa0160410:CDS |
| TATCTCTGAAATAGATAGCG+AGG | 0.637851 | 1_4:+32723050 | Msa0160410:three_prime_UTR |
| GTGTTCAATCGGTTAATAGA+CGG | 0.638059 | 1_4:-32722976 | None:intergenic |
| TGTTGGAGAAAAGACCAGCA+GGG | 0.641864 | 1_4:-32718831 | None:intergenic |
| TGTTGGAGAAAAGACCAGCA+GGG | 0.641864 | 1_4:-32721764 | None:intergenic |
| GATATGTGACAATATTCCCA+AGG | 0.645646 | 1_4:-32720098 | None:intergenic |
| GATATGTGACAATATTCCCA+AGG | 0.645646 | 1_4:-32723031 | None:intergenic |
| AATTCAAAGAAGAGAAGAGG+TGG | 0.659106 | 1_4:-32721179 | None:intergenic |
| TATTAACCGATTGAACACTC+AGG | 0.669123 | 1_4:+32722981 | Msa0160410:three_prime_UTR |
| GTTGGAGAAAAGACCAGCAG+GGG | 0.676212 | 1_4:-32718830 | None:intergenic |
| GTTGGAGAAAAGACCAGCAG+GGG | 0.676212 | 1_4:-32721763 | None:intergenic |
| TCAGCTTAGGAACAAAGCAG+GGG | 0.677918 | 1_4:-32721262 | None:intergenic |
| ACCCTGAATACAAAGCATGT+AGG | 0.683254 | 1_4:+32724695 | Msa0160410:three_prime_UTR |
| AGGCGTTGGAAACTATGCCA+CGG | 0.688382 | 1_4:+32719994 | Msa0160410:CDS |
| AGGCGTTGGAAACTATGCCA+CGG | 0.688382 | 1_4:+32722927 | Msa0160410:three_prime_UTR |
| ATCCTCGAAGCATTGCCGAG+AGG | 0.702830 | 1_4:+32720545 | Msa0160410:CDS |
| ATCCTCGAAGCATTGCCGAG+AGG | 0.702830 | 1_4:+32723478 | Msa0160410:three_prime_UTR |
| CAAATGTATGAGGATGCAGA+AGG | 0.707448 | 1_4:+32724580 | Msa0160410:three_prime_UTR |
| GCAACTAGCCCTGATGACGG+AGG | 0.713476 | 1_4:+32720148 | Msa0160410:CDS |
| GCAACTAGCCCTGATGACGG+AGG | 0.713476 | 1_4:+32723081 | Msa0160410:three_prime_UTR |
| CCATGTCTAGGATAATGAGG+TGG | 0.714763 | 1_4:-32718685 | None:intergenic |
| CCATGTCTAGGATAATGAGG+TGG | 0.714763 | 1_4:-32721618 | None:intergenic |
| TCGTTCACAGAAAATCTCAG+TGG | 0.729969 | 1_4:+32720235 | Msa0160410:CDS |
| TCGTTCACAGAAAATCTCAG+TGG | 0.729969 | 1_4:+32723168 | Msa0160410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATGATTATGAT+GGG | + | chr1_4:32719421-32719440 | Msa0160410:intron | 10.0% |
| !! | TTGGATAATTAATTAATTAA+TGG | + | chr1_4:32720869-32720888 | Msa0160410:intron | 10.0% |
| !! | AAAAAAAAAATGATTATGAT+GGG | + | chr1_4:32719421-32719440 | Msa0160410:intron | 10.0% |
| !! | TTGGATAATTAATTAATTAA+TGG | + | chr1_4:32720869-32720888 | Msa0160410:intron | 10.0% |
| !!! | ATAAAGTTACTAAACATTTT+TGG | + | chr1_4:32718563-32718582 | Msa0160410:CDS | 15.0% |
| !!! | TAAAGTTACTAAACATTTTT+GGG | + | chr1_4:32718564-32718583 | Msa0160410:CDS | 15.0% |
| !! | AACGATAATAATAATATTTC+TGG | + | chr1_4:32718616-32718635 | Msa0160410:CDS | 15.0% |
| !!! | TATGTTTTTTGTTGTTATTT+TGG | + | chr1_4:32718873-32718892 | Msa0160410:intron | 15.0% |
| !! | TTTCATTATTTATAGTTGTA+GGG | + | chr1_4:32719087-32719106 | Msa0160410:intron | 15.0% |
| !! | TATGAGTAATAATATTAATG+AGG | + | chr1_4:32719174-32719193 | Msa0160410:intron | 15.0% |
| !! | GAAAAAAAAAATGATTATGA+TGG | + | chr1_4:32719420-32719439 | Msa0160410:intron | 15.0% |
| !! | AAAAAAAAATGATTATGATG+GGG | + | chr1_4:32719422-32719441 | Msa0160410:intron | 15.0% |
| !!! | ACATTTAGATTTTTCAATTA+GGG | - | chr1_4:32719844-32719863 | None:intergenic | 15.0% |
| !!! | AACATTTAGATTTTTCAATT+AGG | - | chr1_4:32719845-32719864 | None:intergenic | 15.0% |
| !! | TTACTGTAAAAAGATTAAAA+GGG | - | chr1_4:32721331-32721350 | None:intergenic | 15.0% |
| !!! | ATAAAGTTACTAAACATTTT+TGG | + | chr1_4:32718563-32718582 | Msa0160410:CDS | 15.0% |
| !!! | TAAAGTTACTAAACATTTTT+GGG | + | chr1_4:32718564-32718583 | Msa0160410:CDS | 15.0% |
| !! | AACGATAATAATAATATTTC+TGG | + | chr1_4:32718616-32718635 | Msa0160410:CDS | 15.0% |
| !!! | TATGTTTTTTGTTGTTATTT+TGG | + | chr1_4:32718873-32718892 | Msa0160410:intron | 15.0% |
| !! | TTTCATTATTTATAGTTGTA+GGG | + | chr1_4:32719087-32719106 | Msa0160410:intron | 15.0% |
| !! | TATGAGTAATAATATTAATG+AGG | + | chr1_4:32719174-32719193 | Msa0160410:intron | 15.0% |
| !! | GAAAAAAAAAATGATTATGA+TGG | + | chr1_4:32719420-32719439 | Msa0160410:intron | 15.0% |
| !! | AAAAAAAAATGATTATGATG+GGG | + | chr1_4:32719422-32719441 | Msa0160410:intron | 15.0% |
| !!! | ACATTTAGATTTTTCAATTA+GGG | - | chr1_4:32719844-32719863 | None:intergenic | 15.0% |
| !!! | AACATTTAGATTTTTCAATT+AGG | - | chr1_4:32719845-32719864 | None:intergenic | 15.0% |
| !! | ATATATAAGGAGAATTAATT+TGG | + | chr1_4:32723942-32723961 | Msa0160410:intron | 15.0% |
| !! | TTGCTAATTCATAAAAATTA+TGG | - | chr1_4:32724043-32724062 | None:intergenic | 15.0% |
| !! | TTACAAATTCATAAAACTTA+AGG | + | chr1_4:32724418-32724437 | Msa0160410:intron | 15.0% |
| !! | ATTTATGAAATTATAACCAT+TGG | - | chr1_4:32724454-32724473 | None:intergenic | 15.0% |
| !! | CCAATATAAATAAATACTAT+TGG | - | chr1_4:32724782-32724801 | None:intergenic | 15.0% |
| !! | CCAATAGTATTTATTTATAT+TGG | + | chr1_4:32724779-32724798 | Msa0160410:three_prime_UTR | 15.0% |
| !!! | TTATATTGGTAATTTTGTAT+AGG | + | chr1_4:32724793-32724812 | Msa0160410:three_prime_UTR | 15.0% |
| !! | ATTAAGAGTAGAATATTTAT+TGG | - | chr1_4:32724825-32724844 | None:intergenic | 15.0% |
| !!! | AAACATATTACCATTTTGAA+AGG | - | chr1_4:32718860-32718879 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTATTTTGGTT+TGG | + | chr1_4:32718878-32718897 | Msa0160410:intron | 20.0% |
| !! | GTTTCATTATTTATAGTTGT+AGG | + | chr1_4:32719086-32719105 | Msa0160410:intron | 20.0% |
| !!! | TATGAATGATTTTTTGTTGT+AGG | + | chr1_4:32719242-32719261 | Msa0160410:intron | 20.0% |
| !!! | ATGAATGATTTTTTGTTGTA+GGG | + | chr1_4:32719243-32719262 | Msa0160410:intron | 20.0% |
| !!! | TTAATGTTGTTTTAGTTTTC+TGG | + | chr1_4:32719282-32719301 | Msa0160410:intron | 20.0% |
| !! | GAATTTAATGATTCAATTTG+TGG | + | chr1_4:32719472-32719491 | Msa0160410:intron | 20.0% |
| !!! | TGTTGAAGTTATATTTTCAT+TGG | + | chr1_4:32719600-32719619 | Msa0160410:intron | 20.0% |
| !!! | AGTTATATTTTCATTGGATA+TGG | + | chr1_4:32719606-32719625 | Msa0160410:intron | 20.0% |
| !! | TATATACAATTCATTCGTAA+TGG | + | chr1_4:32719926-32719945 | Msa0160410:intron | 20.0% |
| !!! | TTTTGCATATAAAACATTTG+AGG | + | chr1_4:32720655-32720674 | Msa0160410:intron | 20.0% |
| !! | TTTGCATATAAAACATTTGA+GGG | + | chr1_4:32720656-32720675 | Msa0160410:intron | 20.0% |
| !! | AAGATAGGGATAAATAAAAA+GGG | - | chr1_4:32721094-32721113 | None:intergenic | 20.0% |
| !! | AAAGATAGGGATAAATAAAA+AGG | - | chr1_4:32721095-32721114 | None:intergenic | 20.0% |
| !! | GTTACTGTAAAAAGATTAAA+AGG | - | chr1_4:32721332-32721351 | None:intergenic | 20.0% |
| !!! | AAACATATTACCATTTTGAA+AGG | - | chr1_4:32718860-32718879 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTATTTTGGTT+TGG | + | chr1_4:32718878-32718897 | Msa0160410:intron | 20.0% |
| !! | GTTTCATTATTTATAGTTGT+AGG | + | chr1_4:32719086-32719105 | Msa0160410:intron | 20.0% |
| !!! | TATGAATGATTTTTTGTTGT+AGG | + | chr1_4:32719242-32719261 | Msa0160410:intron | 20.0% |
| !!! | ATGAATGATTTTTTGTTGTA+GGG | + | chr1_4:32719243-32719262 | Msa0160410:intron | 20.0% |
| !!! | TTAATGTTGTTTTAGTTTTC+TGG | + | chr1_4:32719282-32719301 | Msa0160410:intron | 20.0% |
| !! | GAATTTAATGATTCAATTTG+TGG | + | chr1_4:32719472-32719491 | Msa0160410:intron | 20.0% |
| !!! | TGTTGAAGTTATATTTTCAT+TGG | + | chr1_4:32719600-32719619 | Msa0160410:intron | 20.0% |
| !!! | AGTTATATTTTCATTGGATA+TGG | + | chr1_4:32719606-32719625 | Msa0160410:intron | 20.0% |
| !! | TATATACAATTCATTCGTAA+TGG | + | chr1_4:32719926-32719945 | Msa0160410:intron | 20.0% |
| !!! | TTTTGCATATAAAACATTTG+AGG | + | chr1_4:32720655-32720674 | Msa0160410:intron | 20.0% |
| !! | TTTGCATATAAAACATTTGA+GGG | + | chr1_4:32720656-32720675 | Msa0160410:intron | 20.0% |
| !!! | ATTAATGGTATAGTTTTGTT+TGG | + | chr1_4:32720884-32720903 | Msa0160410:intron | 20.0% |
| !! | AAATCTTCAAAAACAATTCA+AGG | + | chr1_4:32723916-32723935 | Msa0160410:three_prime_UTR | 20.0% |
| !!! | GTTATTTTCACTTGAAAATT+TGG | - | chr1_4:32724236-32724255 | None:intergenic | 20.0% |
| !! | ATCATTAGCTATACATAATT+GGG | - | chr1_4:32724272-32724291 | None:intergenic | 20.0% |
| !! | AATCATTAGCTATACATAAT+TGG | - | chr1_4:32724273-32724292 | None:intergenic | 20.0% |
| !! | TAATAGCTAAACTTAATTCA+AGG | + | chr1_4:32724362-32724381 | Msa0160410:intron | 20.0% |
| !!! | TTTTTGTGTTGAAAATTTCA+AGG | + | chr1_4:32724390-32724409 | Msa0160410:intron | 20.0% |
| ! | ATTAATGAGGATATGTGTAT+TGG | + | chr1_4:32719187-32719206 | Msa0160410:intron | 25.0% |
| !! | TAATGAGAATATTGCTACTT+TGG | + | chr1_4:32719339-32719358 | Msa0160410:intron | 25.0% |
| ! | TTCAAGTGAGATAAGAATAA+GGG | - | chr1_4:32719511-32719530 | None:intergenic | 25.0% |
| !! | TTTCAAGTGAGATAAGAATA+AGG | - | chr1_4:32719512-32719531 | None:intergenic | 25.0% |
| !! | ATATTTTCATTGGATATGGA+AGG | + | chr1_4:32719610-32719629 | Msa0160410:intron | 25.0% |
| !! | TATTTTCATTGGATATGGAA+GGG | + | chr1_4:32719611-32719630 | Msa0160410:intron | 25.0% |
| !! | TGATAATGTTCATAAATTGC+AGG | + | chr1_4:32719956-32719975 | Msa0160410:intron | 25.0% |
| ! | GATAATGTTCATAAATTGCA+GGG | + | chr1_4:32719957-32719976 | Msa0160410:intron | 25.0% |
| !! | AAAAATGTTTTCTGATATGC+AGG | + | chr1_4:32720285-32720304 | Msa0160410:CDS | 25.0% |
| !! | GAAGCTTAATTCACTTATTT+TGG | + | chr1_4:32720317-32720336 | Msa0160410:intron | 25.0% |
| ! | AGATGCTTGAAAAAACTAAT+TGG | - | chr1_4:32720596-32720615 | None:intergenic | 25.0% |
| !! | TTGAAGAAGTAACTATTTTC+AGG | + | chr1_4:32720739-32720758 | Msa0160410:intron | 25.0% |
| !!! | ACATCAATTTTGTTTGACTT+TGG | + | chr1_4:32720840-32720859 | Msa0160410:intron | 25.0% |
| !! | TGTTTGACTTTGGAAAATAT+TGG | + | chr1_4:32720850-32720869 | Msa0160410:intron | 25.0% |
| !!! | TTTTGAAAAGAGTGAAAGAA+AGG | - | chr1_4:32721035-32721054 | None:intergenic | 25.0% |
| ! | CAAGAGAACAAAACAAAAAT+AGG | - | chr1_4:32721218-32721237 | None:intergenic | 25.0% |
| !!! | TCAAAAAAGTTTTTCAGCTT+AGG | - | chr1_4:32721278-32721297 | None:intergenic | 25.0% |
| !! | TTCTCTGTTTTCACATATAA+TGG | + | chr1_4:32721302-32721321 | Msa0160410:three_prime_UTR | 25.0% |
| ! | ATTAATGAGGATATGTGTAT+TGG | + | chr1_4:32719187-32719206 | Msa0160410:intron | 25.0% |
| !! | TAATGAGAATATTGCTACTT+TGG | + | chr1_4:32719339-32719358 | Msa0160410:intron | 25.0% |
| ! | TTCAAGTGAGATAAGAATAA+GGG | - | chr1_4:32719511-32719530 | None:intergenic | 25.0% |
| !! | TTTCAAGTGAGATAAGAATA+AGG | - | chr1_4:32719512-32719531 | None:intergenic | 25.0% |
| !! | ATATTTTCATTGGATATGGA+AGG | + | chr1_4:32719610-32719629 | Msa0160410:intron | 25.0% |
| !! | TATTTTCATTGGATATGGAA+GGG | + | chr1_4:32719611-32719630 | Msa0160410:intron | 25.0% |
| !! | TGATAATGTTCATAAATTGC+AGG | + | chr1_4:32719956-32719975 | Msa0160410:intron | 25.0% |
| ! | GATAATGTTCATAAATTGCA+GGG | + | chr1_4:32719957-32719976 | Msa0160410:intron | 25.0% |
| !! | AAAAATGTTTTCTGATATGC+AGG | + | chr1_4:32720285-32720304 | Msa0160410:CDS | 25.0% |
| !! | GAAGCTTAATTCACTTATTT+TGG | + | chr1_4:32720317-32720336 | Msa0160410:intron | 25.0% |
| ! | AGATGCTTGAAAAAACTAAT+TGG | - | chr1_4:32720596-32720615 | None:intergenic | 25.0% |
| !! | TTGAAGAAGTAACTATTTTC+AGG | + | chr1_4:32720739-32720758 | Msa0160410:intron | 25.0% |
| !!! | ACATCAATTTTGTTTGACTT+TGG | + | chr1_4:32720840-32720859 | Msa0160410:intron | 25.0% |
| !! | TGTTTGACTTTGGAAAATAT+TGG | + | chr1_4:32720850-32720869 | Msa0160410:intron | 25.0% |
| ! | CAATTCAAGGTACATATATA+AGG | + | chr1_4:32723929-32723948 | Msa0160410:intron | 25.0% |
| !!! | AAGGAGAATTAATTTGGTTT+TGG | + | chr1_4:32723948-32723967 | Msa0160410:intron | 25.0% |
| ! | AATTTCTGATTCACTTGTAA+GGG | - | chr1_4:32723985-32724004 | None:intergenic | 25.0% |
| ! | AAATTTCTGATTCACTTGTA+AGG | - | chr1_4:32723986-32724005 | None:intergenic | 25.0% |
| ! | ATCAAAATAGTCTCTCTATT+AGG | + | chr1_4:32724090-32724109 | Msa0160410:intron | 25.0% |
| ! | AATTCCACATCATCATTTAA+GGG | - | chr1_4:32724142-32724161 | None:intergenic | 25.0% |
| ! | AAATTCCACATCATCATTTA+AGG | - | chr1_4:32724143-32724162 | None:intergenic | 25.0% |
| !! | TTTGTTATGACTAAAAGCTT+AGG | + | chr1_4:32724195-32724214 | Msa0160410:intron | 25.0% |
| !! | TTTCAAGTGAAAATAACTCT+CGG | + | chr1_4:32724239-32724258 | Msa0160410:intron | 25.0% |
| ! | ATCAATCACTATGATGATAA+GGG | - | chr1_4:32724491-32724510 | None:intergenic | 25.0% |
| ! | TATCAATCACTATGATGATA+AGG | - | chr1_4:32724492-32724511 | None:intergenic | 25.0% |
| ! | TCATAGTGATTGATATTAAC+TGG | + | chr1_4:32724497-32724516 | Msa0160410:intron | 25.0% |
| !!! | AGATTTTGAAACAGTGAACT+AGG | - | chr1_4:32718511-32718530 | None:intergenic | 30.0% |
| TTATTAGAATCACCAGAAGA+AGG | - | chr1_4:32718547-32718566 | None:intergenic | 30.0% | |
| !! | GTTACTAAACATTTTTGGGA+TGG | + | chr1_4:32718568-32718587 | Msa0160410:CDS | 30.0% |
| !! | TGTTCTAAGGAAATGAATTC+TGG | + | chr1_4:32718646-32718665 | Msa0160410:CDS | 30.0% |
| ! | ACATCACATGATAAGAGTTT+TGG | + | chr1_4:32718781-32718800 | Msa0160410:CDS | 30.0% |
| TCCAACATTTCCTTTCAAAA+TGG | + | chr1_4:32718847-32718866 | Msa0160410:intron | 30.0% | |
| !! | ACCATTTTGAAAGGAAATGT+TGG | - | chr1_4:32718851-32718870 | None:intergenic | 30.0% |
| GTTAATTGCAATGACCTATA+AGG | + | chr1_4:32719370-32719389 | Msa0160410:intron | 30.0% | |
| AATCGTGGTATGTATGAAAA+TGG | + | chr1_4:32719398-32719417 | Msa0160410:intron | 30.0% | |
| ! | ATTTTCATTGGATATGGAAG+GGG | + | chr1_4:32719612-32719631 | Msa0160410:intron | 30.0% |
| ! | ATTTTACAAGGAACAGAATC+TGG | - | chr1_4:32720499-32720518 | None:intergenic | 30.0% |
| ATTTGTACCTTATCCATGTT+TGG | - | chr1_4:32720815-32720834 | None:intergenic | 30.0% | |
| !!! | AGATTTTGAAACAGTGAACT+AGG | - | chr1_4:32718511-32718530 | None:intergenic | 30.0% |
| TTATTAGAATCACCAGAAGA+AGG | - | chr1_4:32718547-32718566 | None:intergenic | 30.0% | |
| !! | GTTACTAAACATTTTTGGGA+TGG | + | chr1_4:32718568-32718587 | Msa0160410:CDS | 30.0% |
| !! | TGTTCTAAGGAAATGAATTC+TGG | + | chr1_4:32718646-32718665 | Msa0160410:CDS | 30.0% |
| ! | ACATCACATGATAAGAGTTT+TGG | + | chr1_4:32718781-32718800 | Msa0160410:CDS | 30.0% |
| TCCAACATTTCCTTTCAAAA+TGG | + | chr1_4:32718847-32718866 | Msa0160410:intron | 30.0% | |
| !! | ACCATTTTGAAAGGAAATGT+TGG | - | chr1_4:32718851-32718870 | None:intergenic | 30.0% |
| GTTAATTGCAATGACCTATA+AGG | + | chr1_4:32719370-32719389 | Msa0160410:intron | 30.0% | |
| AATCGTGGTATGTATGAAAA+TGG | + | chr1_4:32719398-32719417 | Msa0160410:intron | 30.0% | |
| ! | ATTTTCATTGGATATGGAAG+GGG | + | chr1_4:32719612-32719631 | Msa0160410:intron | 30.0% |
| ! | ATTTTACAAGGAACAGAATC+TGG | - | chr1_4:32720499-32720518 | None:intergenic | 30.0% |
| ATTTGTACCTTATCCATGTT+TGG | - | chr1_4:32720815-32720834 | None:intergenic | 30.0% | |
| !!! | AATGGTATAGTTTTGTTTGG+AGG | + | chr1_4:32723820-32723839 | Msa0160410:intron | 30.0% |
| TTGACATTTCTTCATGTTCT+TGG | + | chr1_4:32723843-32723862 | Msa0160410:intron | 30.0% | |
| TGATCGATAGTTACAATTTC+AGG | - | chr1_4:32724013-32724032 | None:intergenic | 30.0% | |
| GTATAGCTAATGATTTCACA+TGG | + | chr1_4:32724278-32724297 | Msa0160410:intron | 30.0% | |
| ! | TTAAGGACGAATTTTACCAA+TGG | + | chr1_4:32724435-32724454 | Msa0160410:intron | 30.0% |
| ACAACCAATCCAATTCTTCT+GGG | + | chr1_4:32718464-32718483 | Msa0160410:CDS | 35.0% | |
| !! | TTCTGGTTCATCTTGTTCTA+AGG | + | chr1_4:32718633-32718652 | Msa0160410:CDS | 35.0% |
| ! | TTCTACTTCAAGTTCTGCTA+TGG | + | chr1_4:32718714-32718733 | Msa0160410:CDS | 35.0% |
| ! | TATGGATGGTTCTTTTGGAT+TGG | + | chr1_4:32718732-32718751 | Msa0160410:CDS | 35.0% |
| !!! | TTTTGGATTGGTTGGTTCAT+TGG | + | chr1_4:32718744-32718763 | Msa0160410:CDS | 35.0% |
| !! | TTTGGATTGGTTGGTTCATT+GGG | + | chr1_4:32718745-32718764 | Msa0160410:CDS | 35.0% |
| TGGTTCAAATCTTCTTAGAC+AGG | + | chr1_4:32718801-32718820 | Msa0160410:CDS | 35.0% | |
| GGTTCAAATCTTCTTAGACA+GGG | + | chr1_4:32718802-32718821 | Msa0160410:CDS | 35.0% | |
| !! | ATAGTTGTAGGGTGTTCTTT+TGG | + | chr1_4:32719098-32719117 | Msa0160410:intron | 35.0% |
| !! | TTTGTTGTAGGGTGTTCTTT+TGG | + | chr1_4:32719254-32719273 | Msa0160410:intron | 35.0% |
| ATGGGGACATGTACAATTTA+TGG | + | chr1_4:32719439-32719458 | Msa0160410:intron | 35.0% | |
| ! | AGATCGACTCAATTCAAACT+AGG | - | chr1_4:32719550-32719569 | None:intergenic | 35.0% |
| ! | ATTGAGTCGATCTCAGTTTT+AGG | + | chr1_4:32719557-32719576 | Msa0160410:intron | 35.0% |
| AAGGGAAATTAAAGCACAAG+TGG | - | chr1_4:32719665-32719684 | None:intergenic | 35.0% | |
| TTGTGAATTGATCGCGAATT+AGG | + | chr1_4:32719701-32719720 | Msa0160410:intron | 35.0% | |
| !! | AACCAATTCGCAAAAGTACT+GGG | + | chr1_4:32719727-32719746 | Msa0160410:intron | 35.0% |
| !! | GTGATTATGAGCTTAGCTTT+TGG | + | chr1_4:32719802-32719821 | Msa0160410:intron | 35.0% |
| TAACAACCTAAGATTCAGGT+GGG | - | chr1_4:32719890-32719909 | None:intergenic | 35.0% | |
| TTAACAACCTAAGATTCAGG+TGG | - | chr1_4:32719891-32719910 | None:intergenic | 35.0% | |
| GTCTTAACAACCTAAGATTC+AGG | - | chr1_4:32719894-32719913 | None:intergenic | 35.0% | |
| !! | TTTTCTACCATTAAAGGCGT+TGG | + | chr1_4:32719980-32719999 | Msa0160410:CDS | 35.0% |
| ATAGTTTCCAACGCCTTTAA+TGG | - | chr1_4:32719990-32720009 | None:intergenic | 35.0% | |
| GTGTTCAATCGGTTAATAGA+CGG | - | chr1_4:32720046-32720065 | None:intergenic | 35.0% | |
| TATTAACCGATTGAACACTC+AGG | + | chr1_4:32720048-32720067 | Msa0160410:intron | 35.0% | |
| !! | AGGAAGAAGCATTTCTTGAA+GGG | - | chr1_4:32720081-32720100 | None:intergenic | 35.0% |
| !! | AAGGAAGAAGCATTTCTTGA+AGG | - | chr1_4:32720082-32720101 | None:intergenic | 35.0% |
| TTCAAGAAATGCTTCTTCCT+TGG | + | chr1_4:32720081-32720100 | Msa0160410:CDS | 35.0% | |
| TCAAGAAATGCTTCTTCCTT+GGG | + | chr1_4:32720082-32720101 | Msa0160410:CDS | 35.0% | |
| GATATGTGACAATATTCCCA+AGG | - | chr1_4:32720101-32720120 | None:intergenic | 35.0% | |
| !! | TATCTCTGAAATAGATAGCG+AGG | + | chr1_4:32720117-32720136 | Msa0160410:CDS | 35.0% |
| TATCGTTCCAAGAACTATAG+GGG | - | chr1_4:32720210-32720229 | None:intergenic | 35.0% | |
| GTATCGTTCCAAGAACTATA+GGG | - | chr1_4:32720211-32720230 | None:intergenic | 35.0% | |
| AGTATCGTTCCAAGAACTAT+AGG | - | chr1_4:32720212-32720231 | None:intergenic | 35.0% | |
| AATCTCAGTGGTTTGAAAAG+AGG | + | chr1_4:32720247-32720266 | Msa0160410:CDS | 35.0% | |
| ATCTCAGTGGTTTGAAAAGA+GGG | + | chr1_4:32720248-32720267 | Msa0160410:CDS | 35.0% | |
| !!! | ATTTGTTTTACTCATCAGCG+TGG | + | chr1_4:32720379-32720398 | Msa0160410:intron | 35.0% |
| ! | ATCATCTCAGATGAAGTGTT+TGG | - | chr1_4:32720451-32720470 | None:intergenic | 35.0% |
| ! | TTCATCTGAGATGATTGCTA+TGG | + | chr1_4:32720456-32720475 | Msa0160410:CDS | 35.0% |
| TAAACAAAACCATACCCTCT+CGG | - | chr1_4:32720563-32720582 | None:intergenic | 35.0% | |
| AATTCAAAGAAGAGAAGAGG+TGG | - | chr1_4:32721182-32721201 | None:intergenic | 35.0% | |
| ACAACCAATCCAATTCTTCT+GGG | + | chr1_4:32718464-32718483 | Msa0160410:CDS | 35.0% | |
| !! | TTCTGGTTCATCTTGTTCTA+AGG | + | chr1_4:32718633-32718652 | Msa0160410:CDS | 35.0% |
| ! | TTCTACTTCAAGTTCTGCTA+TGG | + | chr1_4:32718714-32718733 | Msa0160410:CDS | 35.0% |
| ! | TATGGATGGTTCTTTTGGAT+TGG | + | chr1_4:32718732-32718751 | Msa0160410:CDS | 35.0% |
| !!! | TTTTGGATTGGTTGGTTCAT+TGG | + | chr1_4:32718744-32718763 | Msa0160410:CDS | 35.0% |
| !! | TTTGGATTGGTTGGTTCATT+GGG | + | chr1_4:32718745-32718764 | Msa0160410:CDS | 35.0% |
| TGGTTCAAATCTTCTTAGAC+AGG | + | chr1_4:32718801-32718820 | Msa0160410:CDS | 35.0% | |
| GGTTCAAATCTTCTTAGACA+GGG | + | chr1_4:32718802-32718821 | Msa0160410:CDS | 35.0% | |
| !! | ATAGTTGTAGGGTGTTCTTT+TGG | + | chr1_4:32719098-32719117 | Msa0160410:intron | 35.0% |
| !! | TTTGTTGTAGGGTGTTCTTT+TGG | + | chr1_4:32719254-32719273 | Msa0160410:intron | 35.0% |
| ATGGGGACATGTACAATTTA+TGG | + | chr1_4:32719439-32719458 | Msa0160410:intron | 35.0% | |
| ! | AGATCGACTCAATTCAAACT+AGG | - | chr1_4:32719550-32719569 | None:intergenic | 35.0% |
| ! | ATTGAGTCGATCTCAGTTTT+AGG | + | chr1_4:32719557-32719576 | Msa0160410:intron | 35.0% |
| AAGGGAAATTAAAGCACAAG+TGG | - | chr1_4:32719665-32719684 | None:intergenic | 35.0% | |
| TTGTGAATTGATCGCGAATT+AGG | + | chr1_4:32719701-32719720 | Msa0160410:intron | 35.0% | |
| !! | AACCAATTCGCAAAAGTACT+GGG | + | chr1_4:32719727-32719746 | Msa0160410:intron | 35.0% |
| !! | GTGATTATGAGCTTAGCTTT+TGG | + | chr1_4:32719802-32719821 | Msa0160410:intron | 35.0% |
| TAACAACCTAAGATTCAGGT+GGG | - | chr1_4:32719890-32719909 | None:intergenic | 35.0% | |
| TTAACAACCTAAGATTCAGG+TGG | - | chr1_4:32719891-32719910 | None:intergenic | 35.0% | |
| GTCTTAACAACCTAAGATTC+AGG | - | chr1_4:32719894-32719913 | None:intergenic | 35.0% | |
| !! | TTTTCTACCATTAAAGGCGT+TGG | + | chr1_4:32719980-32719999 | Msa0160410:CDS | 35.0% |
| ATAGTTTCCAACGCCTTTAA+TGG | - | chr1_4:32719990-32720009 | None:intergenic | 35.0% | |
| GTGTTCAATCGGTTAATAGA+CGG | - | chr1_4:32720046-32720065 | None:intergenic | 35.0% | |
| TATTAACCGATTGAACACTC+AGG | + | chr1_4:32720048-32720067 | Msa0160410:intron | 35.0% | |
| !! | AGGAAGAAGCATTTCTTGAA+GGG | - | chr1_4:32720081-32720100 | None:intergenic | 35.0% |
| !! | AAGGAAGAAGCATTTCTTGA+AGG | - | chr1_4:32720082-32720101 | None:intergenic | 35.0% |
| TTCAAGAAATGCTTCTTCCT+TGG | + | chr1_4:32720081-32720100 | Msa0160410:CDS | 35.0% | |
| TCAAGAAATGCTTCTTCCTT+GGG | + | chr1_4:32720082-32720101 | Msa0160410:CDS | 35.0% | |
| GATATGTGACAATATTCCCA+AGG | - | chr1_4:32720101-32720120 | None:intergenic | 35.0% | |
| !! | TATCTCTGAAATAGATAGCG+AGG | + | chr1_4:32720117-32720136 | Msa0160410:CDS | 35.0% |
| TATCGTTCCAAGAACTATAG+GGG | - | chr1_4:32720210-32720229 | None:intergenic | 35.0% | |
| GTATCGTTCCAAGAACTATA+GGG | - | chr1_4:32720211-32720230 | None:intergenic | 35.0% | |
| AGTATCGTTCCAAGAACTAT+AGG | - | chr1_4:32720212-32720231 | None:intergenic | 35.0% | |
| AATCTCAGTGGTTTGAAAAG+AGG | + | chr1_4:32720247-32720266 | Msa0160410:CDS | 35.0% | |
| ATCTCAGTGGTTTGAAAAGA+GGG | + | chr1_4:32720248-32720267 | Msa0160410:CDS | 35.0% | |
| !!! | ATTTGTTTTACTCATCAGCG+TGG | + | chr1_4:32720379-32720398 | Msa0160410:intron | 35.0% |
| ! | ATCATCTCAGATGAAGTGTT+TGG | - | chr1_4:32720451-32720470 | None:intergenic | 35.0% |
| ! | TTCATCTGAGATGATTGCTA+TGG | + | chr1_4:32720456-32720475 | Msa0160410:CDS | 35.0% |
| TAAACAAAACCATACCCTCT+CGG | - | chr1_4:32720563-32720582 | None:intergenic | 35.0% | |
| AACTAACACATCAGACATGT+TGG | + | chr1_4:32723871-32723890 | Msa0160410:three_prime_UTR | 35.0% | |
| ATAGTCTCTCTATTAGGTTC+TGG | + | chr1_4:32724096-32724115 | Msa0160410:intron | 35.0% | |
| ! | TGATGATGTGGAATTTCATG+TGG | + | chr1_4:32724147-32724166 | Msa0160410:intron | 35.0% |
| GTTTGCTCGTTTATCACTTA+GGG | - | chr1_4:32724558-32724577 | None:intergenic | 35.0% | |
| ! | AGTTTGCTCGTTTATCACTT+AGG | - | chr1_4:32724559-32724578 | None:intergenic | 35.0% |
| ACCTACATGCTTTGTATTCA+GGG | - | chr1_4:32724699-32724718 | None:intergenic | 35.0% | |
| ! | TCTAAAGAACCTTTTTGCTG+TGG | - | chr1_4:32724727-32724746 | None:intergenic | 35.0% |
| CACAACCAATCCAATTCTTC+TGG | + | chr1_4:32718463-32718482 | Msa0160410:CDS | 40.0% | |
| ! | ACACCTTCTTTTCCTTCTTC+TGG | + | chr1_4:32718532-32718551 | Msa0160410:CDS | 40.0% |
| TCACCAGAAGAAGGAAAAGA+AGG | - | chr1_4:32718538-32718557 | None:intergenic | 40.0% | |
| ! | ATGAATTCTGGTTATGCTGC+TGG | + | chr1_4:32718658-32718677 | Msa0160410:CDS | 40.0% |
| ! | GAACCATGTCTAGGATAATG+AGG | - | chr1_4:32718691-32718710 | None:intergenic | 40.0% |
| CATTATCCTAGACATGGTTC+TGG | + | chr1_4:32718691-32718710 | Msa0160410:CDS | 40.0% | |
| ! | ACTTCAAGTTCTGCTATGGA+TGG | + | chr1_4:32718718-32718737 | Msa0160410:CDS | 40.0% |
| ! | TCTGCTATGGATGGTTCTTT+TGG | + | chr1_4:32718727-32718746 | Msa0160410:CDS | 40.0% |
| !!! | GATGGTTCTTTTGGATTGGT+TGG | + | chr1_4:32718736-32718755 | Msa0160410:CDS | 40.0% |
| ! | ATTGGTTGGTTCATTGGGAA+TGG | + | chr1_4:32718750-32718769 | Msa0160410:CDS | 40.0% |
| GAAACCAAACCAAGTTGCTT+GGG | - | chr1_4:32719071-32719090 | None:intergenic | 40.0% | |
| TGAAACCAAACCAAGTTGCT+TGG | - | chr1_4:32719072-32719091 | None:intergenic | 40.0% | |
| ACCTATAAGGCTAGAAATCG+TGG | + | chr1_4:32719383-32719402 | Msa0160410:intron | 40.0% | |
| !! | ACCACGATTTCTAGCCTTAT+AGG | - | chr1_4:32719387-32719406 | None:intergenic | 40.0% |
| AAAAGCTCGGGTGACAAAAA+GGG | - | chr1_4:32719683-32719702 | None:intergenic | 40.0% | |
| CGATCAATTCACAAAAGCTC+GGG | - | chr1_4:32719695-32719714 | None:intergenic | 40.0% | |
| GCGATCAATTCACAAAAGCT+CGG | - | chr1_4:32719696-32719715 | None:intergenic | 40.0% | |
| ! | GAACCAATTCGCAAAAGTAC+TGG | + | chr1_4:32719726-32719745 | Msa0160410:intron | 40.0% |
| ! | ATCCCAGTACTTTTGCGAAT+TGG | - | chr1_4:32719732-32719751 | None:intergenic | 40.0% |
| !! | TTCGCAAAAGTACTGGGATT+TGG | + | chr1_4:32719733-32719752 | Msa0160410:intron | 40.0% |
| TGATATCCCACCTGAATCTT+AGG | + | chr1_4:32719881-32719900 | Msa0160410:intron | 40.0% | |
| ! | GCAGGGTTTTCTACCATTAA+AGG | + | chr1_4:32719974-32719993 | Msa0160410:intron | 40.0% |
| AGGTAACCTGAGTGTTCAAT+CGG | - | chr1_4:32720057-32720076 | None:intergenic | 40.0% | |
| !! | AGAAGCATTTCTTGAAGGGA+AGG | - | chr1_4:32720077-32720096 | None:intergenic | 40.0% |
| AACGGTGATTCTACTCACTA+TGG | + | chr1_4:32720175-32720194 | Msa0160410:CDS | 40.0% | |
| TCGTTCACAGAAAATCTCAG+TGG | + | chr1_4:32720235-32720254 | Msa0160410:CDS | 40.0% | |
| TCTGATATGCAGGTATGTGT+AGG | + | chr1_4:32720295-32720314 | Msa0160410:intron | 40.0% | |
| ! | CGTTTCGCTCGAATTTTACA+AGG | - | chr1_4:32720511-32720530 | None:intergenic | 40.0% |
| TGTAAAATTCGAGCGAAACG+AGG | + | chr1_4:32720511-32720530 | Msa0160410:CDS | 40.0% | |
| GCTTGTTCCAAACATGGATA+AGG | + | chr1_4:32720805-32720824 | Msa0160410:CDS | 40.0% | |
| GAAAGGGACAAGGAAAGATA+GGG | - | chr1_4:32721108-32721127 | None:intergenic | 40.0% | |
| TGAAAGGGACAAGGAAAGAT+AGG | - | chr1_4:32721109-32721128 | None:intergenic | 40.0% | |
| CAGAGAGAGATCAAGTGAAA+GGG | - | chr1_4:32721124-32721143 | None:intergenic | 40.0% | |
| ACAGAGAGAGATCAAGTGAA+AGG | - | chr1_4:32721125-32721144 | None:intergenic | 40.0% | |
| CGCAATTCAAAGAAGAGAAG+AGG | - | chr1_4:32721185-32721204 | None:intergenic | 40.0% | |
| TTCAGCTTAGGAACAAAGCA+GGG | - | chr1_4:32721266-32721285 | None:intergenic | 40.0% | |
| TTTCAGCTTAGGAACAAAGC+AGG | - | chr1_4:32721267-32721286 | None:intergenic | 40.0% | |
| CACAACCAATCCAATTCTTC+TGG | + | chr1_4:32718463-32718482 | Msa0160410:CDS | 40.0% | |
| ! | ACACCTTCTTTTCCTTCTTC+TGG | + | chr1_4:32718532-32718551 | Msa0160410:CDS | 40.0% |
| TCACCAGAAGAAGGAAAAGA+AGG | - | chr1_4:32718538-32718557 | None:intergenic | 40.0% | |
| ! | ATGAATTCTGGTTATGCTGC+TGG | + | chr1_4:32718658-32718677 | Msa0160410:CDS | 40.0% |
| ! | GAACCATGTCTAGGATAATG+AGG | - | chr1_4:32718691-32718710 | None:intergenic | 40.0% |
| CATTATCCTAGACATGGTTC+TGG | + | chr1_4:32718691-32718710 | Msa0160410:CDS | 40.0% | |
| ! | ACTTCAAGTTCTGCTATGGA+TGG | + | chr1_4:32718718-32718737 | Msa0160410:CDS | 40.0% |
| ! | TCTGCTATGGATGGTTCTTT+TGG | + | chr1_4:32718727-32718746 | Msa0160410:CDS | 40.0% |
| !!! | GATGGTTCTTTTGGATTGGT+TGG | + | chr1_4:32718736-32718755 | Msa0160410:CDS | 40.0% |
| ! | ATTGGTTGGTTCATTGGGAA+TGG | + | chr1_4:32718750-32718769 | Msa0160410:CDS | 40.0% |
| GAAACCAAACCAAGTTGCTT+GGG | - | chr1_4:32719071-32719090 | None:intergenic | 40.0% | |
| TGAAACCAAACCAAGTTGCT+TGG | - | chr1_4:32719072-32719091 | None:intergenic | 40.0% | |
| ACCTATAAGGCTAGAAATCG+TGG | + | chr1_4:32719383-32719402 | Msa0160410:intron | 40.0% | |
| !! | ACCACGATTTCTAGCCTTAT+AGG | - | chr1_4:32719387-32719406 | None:intergenic | 40.0% |
| AAAAGCTCGGGTGACAAAAA+GGG | - | chr1_4:32719683-32719702 | None:intergenic | 40.0% | |
| CGATCAATTCACAAAAGCTC+GGG | - | chr1_4:32719695-32719714 | None:intergenic | 40.0% | |
| GCGATCAATTCACAAAAGCT+CGG | - | chr1_4:32719696-32719715 | None:intergenic | 40.0% | |
| ! | GAACCAATTCGCAAAAGTAC+TGG | + | chr1_4:32719726-32719745 | Msa0160410:intron | 40.0% |
| ! | ATCCCAGTACTTTTGCGAAT+TGG | - | chr1_4:32719732-32719751 | None:intergenic | 40.0% |
| !! | TTCGCAAAAGTACTGGGATT+TGG | + | chr1_4:32719733-32719752 | Msa0160410:intron | 40.0% |
| TGATATCCCACCTGAATCTT+AGG | + | chr1_4:32719881-32719900 | Msa0160410:intron | 40.0% | |
| ! | GCAGGGTTTTCTACCATTAA+AGG | + | chr1_4:32719974-32719993 | Msa0160410:intron | 40.0% |
| AGGTAACCTGAGTGTTCAAT+CGG | - | chr1_4:32720057-32720076 | None:intergenic | 40.0% | |
| !! | AGAAGCATTTCTTGAAGGGA+AGG | - | chr1_4:32720077-32720096 | None:intergenic | 40.0% |
| AACGGTGATTCTACTCACTA+TGG | + | chr1_4:32720175-32720194 | Msa0160410:CDS | 40.0% | |
| TCGTTCACAGAAAATCTCAG+TGG | + | chr1_4:32720235-32720254 | Msa0160410:CDS | 40.0% | |
| TCTGATATGCAGGTATGTGT+AGG | + | chr1_4:32720295-32720314 | Msa0160410:intron | 40.0% | |
| ! | CGTTTCGCTCGAATTTTACA+AGG | - | chr1_4:32720511-32720530 | None:intergenic | 40.0% |
| TGTAAAATTCGAGCGAAACG+AGG | + | chr1_4:32720511-32720530 | Msa0160410:CDS | 40.0% | |
| GCTTGTTCCAAACATGGATA+AGG | + | chr1_4:32720805-32720824 | Msa0160410:CDS | 40.0% | |
| TCTGATTCACTTGTAAGGGT+GGG | - | chr1_4:32723981-32724000 | None:intergenic | 40.0% | |
| TTCTGATTCACTTGTAAGGG+TGG | - | chr1_4:32723982-32724001 | None:intergenic | 40.0% | |
| GAGCAAACTGCAAATGTATG+AGG | + | chr1_4:32724570-32724589 | Msa0160410:three_prime_UTR | 40.0% | |
| CAAATGTATGAGGATGCAGA+AGG | + | chr1_4:32724580-32724599 | Msa0160410:three_prime_UTR | 40.0% | |
| ACCCTGAATACAAAGCATGT+AGG | + | chr1_4:32724695-32724714 | Msa0160410:three_prime_UTR | 40.0% | |
| GACCTACATGCTTTGTATTC+AGG | - | chr1_4:32724700-32724719 | None:intergenic | 40.0% | |
| GCAACCCAGAAGAATTGGAT+TGG | - | chr1_4:32718471-32718490 | None:intergenic | 45.0% | |
| ACGAAGCAACCCAGAAGAAT+TGG | - | chr1_4:32718476-32718495 | None:intergenic | 45.0% | |
| ! | CCATGTCTAGGATAATGAGG+TGG | - | chr1_4:32718688-32718707 | None:intergenic | 45.0% |
| CCACCTCATTATCCTAGACA+TGG | + | chr1_4:32718685-32718704 | Msa0160410:CDS | 45.0% | |
| GTAGAACCAGAACCATGTCT+AGG | - | chr1_4:32718700-32718719 | None:intergenic | 45.0% | |
| TGTTGGAGAAAAGACCAGCA+GGG | - | chr1_4:32718834-32718853 | None:intergenic | 45.0% | |
| ATGTTGGAGAAAAGACCAGC+AGG | - | chr1_4:32718835-32718854 | None:intergenic | 45.0% | |
| ACCATTGGTGAGTCGGAAAT+CGG | - | chr1_4:32718930-32718949 | None:intergenic | 45.0% | |
| ATTTCCGACTCACCAATGGT+AGG | + | chr1_4:32718930-32718949 | Msa0160410:intron | 45.0% | |
| !!! | GAGTCGATCTCAGTTTTAGG+TGG | + | chr1_4:32719560-32719579 | Msa0160410:intron | 45.0% |
| CATTGGATATGGAAGGGGAT+TGG | + | chr1_4:32719617-32719636 | Msa0160410:intron | 45.0% | |
| ! | ATATGGAAGGGGATTGGTGA+AGG | + | chr1_4:32719623-32719642 | Msa0160410:intron | 45.0% |
| ! | TATGGAAGGGGATTGGTGAA+GGG | + | chr1_4:32719624-32719643 | Msa0160410:intron | 45.0% |
| CAAAAGCTCGGGTGACAAAA+AGG | - | chr1_4:32719684-32719703 | None:intergenic | 45.0% | |
| GGAAACTATGCCACGGTAAA+TGG | + | chr1_4:32720001-32720020 | Msa0160410:intron | 45.0% | |
| GCCACGGTAAATGGTAGTAA+CGG | + | chr1_4:32720010-32720029 | Msa0160410:intron | 45.0% | |
| GATTCTACTCACTATGGCTC+TGG | + | chr1_4:32720181-32720200 | Msa0160410:CDS | 45.0% | |
| CTGGATTCCCCTATAGTTCT+TGG | + | chr1_4:32720200-32720219 | Msa0160410:CDS | 45.0% | |
| ! | TGTTTTACTCATCAGCGTGG+AGG | + | chr1_4:32720382-32720401 | Msa0160410:intron | 45.0% |
| ! | GTTTTACTCATCAGCGTGGA+GGG | + | chr1_4:32720383-32720402 | Msa0160410:intron | 45.0% |
| ! | GCAAGAGCTTGTTCCAAACA+TGG | + | chr1_4:32720799-32720818 | Msa0160410:CDS | 45.0% |
| GAGATCAAGTGAAAGGGACA+AGG | - | chr1_4:32721118-32721137 | None:intergenic | 45.0% | |
| AAGAAGAGAAGAGGTGGCTA+TGG | - | chr1_4:32721176-32721195 | None:intergenic | 45.0% | |
| TCAGCTTAGGAACAAAGCAG+GGG | - | chr1_4:32721265-32721284 | None:intergenic | 45.0% | |
| GCAACCCAGAAGAATTGGAT+TGG | - | chr1_4:32718471-32718490 | None:intergenic | 45.0% | |
| ACGAAGCAACCCAGAAGAAT+TGG | - | chr1_4:32718476-32718495 | None:intergenic | 45.0% | |
| ! | CCATGTCTAGGATAATGAGG+TGG | - | chr1_4:32718688-32718707 | None:intergenic | 45.0% |
| CCACCTCATTATCCTAGACA+TGG | + | chr1_4:32718685-32718704 | Msa0160410:CDS | 45.0% | |
| GTAGAACCAGAACCATGTCT+AGG | - | chr1_4:32718700-32718719 | None:intergenic | 45.0% | |
| TGTTGGAGAAAAGACCAGCA+GGG | - | chr1_4:32718834-32718853 | None:intergenic | 45.0% | |
| ATGTTGGAGAAAAGACCAGC+AGG | - | chr1_4:32718835-32718854 | None:intergenic | 45.0% | |
| ACCATTGGTGAGTCGGAAAT+CGG | - | chr1_4:32718930-32718949 | None:intergenic | 45.0% | |
| ATTTCCGACTCACCAATGGT+AGG | + | chr1_4:32718930-32718949 | Msa0160410:intron | 45.0% | |
| !!! | GAGTCGATCTCAGTTTTAGG+TGG | + | chr1_4:32719560-32719579 | Msa0160410:intron | 45.0% |
| CATTGGATATGGAAGGGGAT+TGG | + | chr1_4:32719617-32719636 | Msa0160410:intron | 45.0% | |
| ! | ATATGGAAGGGGATTGGTGA+AGG | + | chr1_4:32719623-32719642 | Msa0160410:intron | 45.0% |
| ! | TATGGAAGGGGATTGGTGAA+GGG | + | chr1_4:32719624-32719643 | Msa0160410:intron | 45.0% |
| CAAAAGCTCGGGTGACAAAA+AGG | - | chr1_4:32719684-32719703 | None:intergenic | 45.0% | |
| GGAAACTATGCCACGGTAAA+TGG | + | chr1_4:32720001-32720020 | Msa0160410:intron | 45.0% | |
| GCCACGGTAAATGGTAGTAA+CGG | + | chr1_4:32720010-32720029 | Msa0160410:intron | 45.0% | |
| GATTCTACTCACTATGGCTC+TGG | + | chr1_4:32720181-32720200 | Msa0160410:CDS | 45.0% | |
| CTGGATTCCCCTATAGTTCT+TGG | + | chr1_4:32720200-32720219 | Msa0160410:CDS | 45.0% | |
| ! | TGTTTTACTCATCAGCGTGG+AGG | + | chr1_4:32720382-32720401 | Msa0160410:intron | 45.0% |
| ! | GTTTTACTCATCAGCGTGGA+GGG | + | chr1_4:32720383-32720402 | Msa0160410:intron | 45.0% |
| ! | GCAAGAGCTTGTTCCAAACA+TGG | + | chr1_4:32720799-32720818 | Msa0160410:CDS | 45.0% |
| CACATCAGACATGTTGGACT+TGG | + | chr1_4:32723877-32723896 | Msa0160410:three_prime_UTR | 45.0% | |
| TGGCGTTAGACAACATCATG+TGG | + | chr1_4:32724116-32724135 | Msa0160410:intron | 45.0% | |
| ! | GTGGCCCTTAAATGATGATG+TGG | + | chr1_4:32724135-32724154 | Msa0160410:intron | 45.0% |
| !! | AGAACCTTTTTGCTGTGGTG+AGG | - | chr1_4:32724722-32724741 | None:intergenic | 45.0% |
| !! | TTATTTATATTTACATATAA+TGG | + | chr1_4:32721353-32721372 | Msa0160410:three_prime_UTR | 5.0% |
| GTTGGAGAAAAGACCAGCAG+GGG | - | chr1_4:32718833-32718852 | None:intergenic | 50.0% | |
| ! | ACCGATTTCCGACTCACCAA+TGG | + | chr1_4:32718926-32718945 | Msa0160410:intron | 50.0% |
| CCAATGGTAGGCGACTAATC+CGG | + | chr1_4:32718942-32718961 | Msa0160410:intron | 50.0% | |
| AATACCGGGTTCGATTCCCA+GGG | - | chr1_4:32719008-32719027 | None:intergenic | 50.0% | |
| ! | AAGGGGATTGGTGAAGGGTA+TGG | + | chr1_4:32719629-32719648 | Msa0160410:intron | 50.0% |
| GGTATGCGAGTACAAGTTCG+CGG | + | chr1_4:32719754-32719773 | Msa0160410:intron | 50.0% | |
| AGTACAAGTTCGCGGTTCTC+TGG | + | chr1_4:32719762-32719781 | Msa0160410:intron | 50.0% | |
| !! | AGGCGTTGGAAACTATGCCA+CGG | + | chr1_4:32719994-32720013 | Msa0160410:CDS | 50.0% |
| GCCGTTACTACCATTTACCG+TGG | - | chr1_4:32720014-32720033 | None:intergenic | 50.0% | |
| GAAGCAACTAGCCCTGATGA+CGG | + | chr1_4:32720145-32720164 | Msa0160410:CDS | 50.0% | |
| GTTGGAGAAAAGACCAGCAG+GGG | - | chr1_4:32718833-32718852 | None:intergenic | 50.0% | |
| ! | ACCGATTTCCGACTCACCAA+TGG | + | chr1_4:32718926-32718945 | Msa0160410:intron | 50.0% |
| CCAATGGTAGGCGACTAATC+CGG | + | chr1_4:32718942-32718961 | Msa0160410:intron | 50.0% | |
| AATACCGGGTTCGATTCCCA+GGG | - | chr1_4:32719008-32719027 | None:intergenic | 50.0% | |
| ! | AAGGGGATTGGTGAAGGGTA+TGG | + | chr1_4:32719629-32719648 | Msa0160410:intron | 50.0% |
| GGTATGCGAGTACAAGTTCG+CGG | + | chr1_4:32719754-32719773 | Msa0160410:intron | 50.0% | |
| AGTACAAGTTCGCGGTTCTC+TGG | + | chr1_4:32719762-32719781 | Msa0160410:intron | 50.0% | |
| !! | AGGCGTTGGAAACTATGCCA+CGG | + | chr1_4:32719994-32720013 | Msa0160410:CDS | 50.0% |
| GCCGTTACTACCATTTACCG+TGG | - | chr1_4:32720014-32720033 | None:intergenic | 50.0% | |
| GAAGCAACTAGCCCTGATGA+CGG | + | chr1_4:32720145-32720164 | Msa0160410:CDS | 50.0% | |
| GATTTCACATGGCAGTGACG+TGG | + | chr1_4:32724289-32724308 | Msa0160410:intron | 50.0% | |
| AGGTCCTCACCACAGCAAAA+AGG | + | chr1_4:32724715-32724734 | Msa0160410:three_prime_UTR | 50.0% | |
| GTCGCCTACCATTGGTGAGT+CGG | - | chr1_4:32718937-32718956 | None:intergenic | 55.0% | |
| !! | CCGGATTAGTCGCCTACCAT+TGG | - | chr1_4:32718945-32718964 | None:intergenic | 55.0% |
| ! | CTAATCCGGCTCGTGCTTAG+AGG | + | chr1_4:32718956-32718975 | Msa0160410:intron | 55.0% |
| ATACCGGGTTCGATTCCCAG+GGG | - | chr1_4:32719007-32719026 | None:intergenic | 55.0% | |
| CAATACCGGGTTCGATTCCC+AGG | - | chr1_4:32719009-32719028 | None:intergenic | 55.0% | |
| GAATCGAACCCGGTATTGCC+CGG | + | chr1_4:32719011-32719030 | Msa0160410:intron | 55.0% | |
| AATCGAACCCGGTATTGCCC+GGG | + | chr1_4:32719012-32719031 | Msa0160410:intron | 55.0% | |
| GGAGCCCAAGCAACTTGGTT+TGG | + | chr1_4:32719064-32719083 | Msa0160410:intron | 55.0% | |
| TCGCGGTTCTCTGGTGAATG+CGG | + | chr1_4:32719771-32719790 | Msa0160410:intron | 55.0% | |
| CGTTGCTACCTCCGTCATCA+GGG | - | chr1_4:32720159-32720178 | None:intergenic | 55.0% | |
| !! | CCTGATGACGGAGGTAGCAA+CGG | + | chr1_4:32720157-32720176 | Msa0160410:CDS | 55.0% |
| !! | ATCCTCGAAGCATTGCCGAG+AGG | + | chr1_4:32720545-32720564 | Msa0160410:CDS | 55.0% |
| !! | TCCTCGAAGCATTGCCGAGA+GGG | + | chr1_4:32720546-32720565 | Msa0160410:CDS | 55.0% |
| !! | GAAGCATTGCCGAGAGGGTA+TGG | + | chr1_4:32720551-32720570 | Msa0160410:intron | 55.0% |
| GTCGCCTACCATTGGTGAGT+CGG | - | chr1_4:32718937-32718956 | None:intergenic | 55.0% | |
| !! | CCGGATTAGTCGCCTACCAT+TGG | - | chr1_4:32718945-32718964 | None:intergenic | 55.0% |
| ! | CTAATCCGGCTCGTGCTTAG+AGG | + | chr1_4:32718956-32718975 | Msa0160410:intron | 55.0% |
| ATACCGGGTTCGATTCCCAG+GGG | - | chr1_4:32719007-32719026 | None:intergenic | 55.0% | |
| CAATACCGGGTTCGATTCCC+AGG | - | chr1_4:32719009-32719028 | None:intergenic | 55.0% | |
| GAATCGAACCCGGTATTGCC+CGG | + | chr1_4:32719011-32719030 | Msa0160410:intron | 55.0% | |
| AATCGAACCCGGTATTGCCC+GGG | + | chr1_4:32719012-32719031 | Msa0160410:intron | 55.0% | |
| GGAGCCCAAGCAACTTGGTT+TGG | + | chr1_4:32719064-32719083 | Msa0160410:intron | 55.0% | |
| TCGCGGTTCTCTGGTGAATG+CGG | + | chr1_4:32719771-32719790 | Msa0160410:intron | 55.0% | |
| CGTTGCTACCTCCGTCATCA+GGG | - | chr1_4:32720159-32720178 | None:intergenic | 55.0% | |
| !! | CCTGATGACGGAGGTAGCAA+CGG | + | chr1_4:32720157-32720176 | Msa0160410:CDS | 55.0% |
| !! | ATCCTCGAAGCATTGCCGAG+AGG | + | chr1_4:32720545-32720564 | Msa0160410:CDS | 55.0% |
| !! | TCCTCGAAGCATTGCCGAGA+GGG | + | chr1_4:32720546-32720565 | Msa0160410:CDS | 55.0% |
| !! | GAAGCATTGCCGAGAGGGTA+TGG | + | chr1_4:32720551-32720570 | Msa0160410:intron | 55.0% |
| GCAGTGACGTGGAACTCACA+TGG | + | chr1_4:32724300-32724319 | Msa0160410:intron | 55.0% | |
| AGACAGGGTAGTTCCCCTGC+TGG | + | chr1_4:32718817-32718836 | Msa0160410:CDS | 60.0% | |
| GCATGCCTCTAAGCACGAGC+CGG | - | chr1_4:32718964-32718983 | None:intergenic | 60.0% | |
| ! | GTGCTTAGAGGCATGCGCAC+TGG | + | chr1_4:32718968-32718987 | Msa0160410:intron | 60.0% |
| TTCCCAGGGGGAACAACGCT+TGG | - | chr1_4:32718994-32719013 | None:intergenic | 60.0% | |
| TTCCCCCTGGGAATCGAACC+CGG | + | chr1_4:32719001-32719020 | Msa0160410:intron | 60.0% | |
| TACCGGGTTCGATTCCCAGG+GGG | - | chr1_4:32719006-32719025 | None:intergenic | 60.0% | |
| AGGACGTTCCCGGGCAATAC+CGG | - | chr1_4:32719023-32719042 | None:intergenic | 60.0% | |
| GTATTGCCCGGGAACGTCCT+TGG | + | chr1_4:32719023-32719042 | Msa0160410:intron | 60.0% | |
| CTCCTTCCAAGGACGTTCCC+GGG | - | chr1_4:32719032-32719051 | None:intergenic | 60.0% | |
| GCTCCTTCCAAGGACGTTCC+CGG | - | chr1_4:32719033-32719052 | None:intergenic | 60.0% | |
| CCAAGTTGCTTGGGCTCCTG+CGG | - | chr1_4:32719062-32719081 | None:intergenic | 60.0% | |
| !! | GCAACTAGCCCTGATGACGG+AGG | + | chr1_4:32720148-32720167 | Msa0160410:CDS | 60.0% |
| CCGTTGCTACCTCCGTCATC+AGG | - | chr1_4:32720160-32720179 | None:intergenic | 60.0% | |
| ACTCATCAGCGTGGAGGGCT+TGG | + | chr1_4:32720388-32720407 | Msa0160410:intron | 60.0% | |
| ACCCTCTCGGCAATGCTTCG+AGG | - | chr1_4:32720550-32720569 | None:intergenic | 60.0% | |
| AGACAGGGTAGTTCCCCTGC+TGG | + | chr1_4:32718817-32718836 | Msa0160410:CDS | 60.0% | |
| GCATGCCTCTAAGCACGAGC+CGG | - | chr1_4:32718964-32718983 | None:intergenic | 60.0% | |
| ! | GTGCTTAGAGGCATGCGCAC+TGG | + | chr1_4:32718968-32718987 | Msa0160410:intron | 60.0% |
| TTCCCAGGGGGAACAACGCT+TGG | - | chr1_4:32718994-32719013 | None:intergenic | 60.0% | |
| TTCCCCCTGGGAATCGAACC+CGG | + | chr1_4:32719001-32719020 | Msa0160410:intron | 60.0% | |
| TACCGGGTTCGATTCCCAGG+GGG | - | chr1_4:32719006-32719025 | None:intergenic | 60.0% | |
| AGGACGTTCCCGGGCAATAC+CGG | - | chr1_4:32719023-32719042 | None:intergenic | 60.0% | |
| GTATTGCCCGGGAACGTCCT+TGG | + | chr1_4:32719023-32719042 | Msa0160410:intron | 60.0% | |
| CTCCTTCCAAGGACGTTCCC+GGG | - | chr1_4:32719032-32719051 | None:intergenic | 60.0% | |
| GCTCCTTCCAAGGACGTTCC+CGG | - | chr1_4:32719033-32719052 | None:intergenic | 60.0% | |
| CCAAGTTGCTTGGGCTCCTG+CGG | - | chr1_4:32719062-32719081 | None:intergenic | 60.0% | |
| !! | GCAACTAGCCCTGATGACGG+AGG | + | chr1_4:32720148-32720167 | Msa0160410:CDS | 60.0% |
| CCGTTGCTACCTCCGTCATC+AGG | - | chr1_4:32720160-32720179 | None:intergenic | 60.0% | |
| ACTCATCAGCGTGGAGGGCT+TGG | + | chr1_4:32720388-32720407 | Msa0160410:intron | 60.0% | |
| ACCCTCTCGGCAATGCTTCG+AGG | - | chr1_4:32720550-32720569 | None:intergenic | 60.0% | |
| ! | TGGCCAAGCGTTGTTCCCCC+TGG | + | chr1_4:32718988-32719007 | Msa0160410:intron | 65.0% |
| ! | GGCCAAGCGTTGTTCCCCCT+GGG | + | chr1_4:32718989-32719008 | Msa0160410:intron | 65.0% |
| GGACGTTCCCGGGCAATACC+GGG | - | chr1_4:32719022-32719041 | None:intergenic | 65.0% | |
| TGCCCGGGAACGTCCTTGGA+AGG | + | chr1_4:32719027-32719046 | Msa0160410:intron | 65.0% | |
| GCGGCAAGGAGCTCCTTCCA+AGG | - | chr1_4:32719043-32719062 | None:intergenic | 65.0% | |
| TGGAAGGAGCTCCTTGCCGC+AGG | + | chr1_4:32719043-32719062 | Msa0160410:intron | 65.0% | |
| TTGCTTGGGCTCCTGCGGCA+AGG | - | chr1_4:32719057-32719076 | None:intergenic | 65.0% | |
| CCGCAGGAGCCCAAGCAACT+TGG | + | chr1_4:32719059-32719078 | Msa0160410:intron | 65.0% | |
| ! | TGGCCAAGCGTTGTTCCCCC+TGG | + | chr1_4:32718988-32719007 | Msa0160410:intron | 65.0% |
| ! | GGCCAAGCGTTGTTCCCCCT+GGG | + | chr1_4:32718989-32719008 | Msa0160410:intron | 65.0% |
| GGACGTTCCCGGGCAATACC+GGG | - | chr1_4:32719022-32719041 | None:intergenic | 65.0% | |
| TGCCCGGGAACGTCCTTGGA+AGG | + | chr1_4:32719027-32719046 | Msa0160410:intron | 65.0% | |
| GCGGCAAGGAGCTCCTTCCA+AGG | - | chr1_4:32719043-32719062 | None:intergenic | 65.0% | |
| TGGAAGGAGCTCCTTGCCGC+AGG | + | chr1_4:32719043-32719062 | Msa0160410:intron | 65.0% | |
| TTGCTTGGGCTCCTGCGGCA+AGG | - | chr1_4:32719057-32719076 | None:intergenic | 65.0% | |
| CCGCAGGAGCCCAAGCAACT+TGG | + | chr1_4:32719059-32719078 | Msa0160410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 32718439 | 32724893 | 32718439 | ID=Msa0160410;Name=Msa0160410 |
| chr1_4 | mRNA | 32718439 | 32724893 | 32718439 | ID=Msa0160410-mRNA-1;Parent=Msa0160410;Name=Msa0160410-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0.63|0.5|1|0.54|0.5|12|1712|302 |
| chr1_4 | exon | 32718439 | 32718589 | 32718439 | ID=Msa0160410-mRNA-1:exon:10305;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32718602 | 32718838 | 32718602 | ID=Msa0160410-mRNA-1:exon:10306;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32719978 | 32720015 | 32719978 | ID=Msa0160410-mRNA-1:exon:10307;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32720070 | 32720306 | 32720070 | ID=Msa0160410-mRNA-1:exon:10308;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32720397 | 32720567 | 32720397 | ID=Msa0160410-mRNA-1:exon:10309;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32720761 | 32720826 | 32720761 | ID=Msa0160410-mRNA-1:exon:10310;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32721056 | 32721801 | 32721056 | ID=Msa0160410-mRNA-1:exon:10311;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32722911 | 32723239 | 32722911 | ID=Msa0160410-mRNA-1:exon:10312;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32723330 | 32723500 | 32723330 | ID=Msa0160410-mRNA-1:exon:10313;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32723694 | 32723759 | 32723694 | ID=Msa0160410-mRNA-1:exon:10314;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32723869 | 32723937 | 32723869 | ID=Msa0160410-mRNA-1:exon:10315;Parent=Msa0160410-mRNA-1 |
| chr1_4 | exon | 32724554 | 32724893 | 32724554 | ID=Msa0160410-mRNA-1:exon:10316;Parent=Msa0160410-mRNA-1 |
| chr1_4 | CDS | 32718439 | 32718589 | 32718439 | ID=Msa0160410-mRNA-1:cds;Parent=Msa0160410-mRNA-1 |
| chr1_4 | CDS | 32718602 | 32718838 | 32718602 | ID=Msa0160410-mRNA-1:cds;Parent=Msa0160410-mRNA-1 |
| chr1_4 | CDS | 32719978 | 32720015 | 32719978 | ID=Msa0160410-mRNA-1:cds;Parent=Msa0160410-mRNA-1 |
| chr1_4 | CDS | 32720070 | 32720306 | 32720070 | ID=Msa0160410-mRNA-1:cds;Parent=Msa0160410-mRNA-1 |
| chr1_4 | CDS | 32720397 | 32720567 | 32720397 | ID=Msa0160410-mRNA-1:cds;Parent=Msa0160410-mRNA-1 |
| chr1_4 | CDS | 32720761 | 32720826 | 32720761 | ID=Msa0160410-mRNA-1:cds;Parent=Msa0160410-mRNA-1 |
| chr1_4 | CDS | 32721056 | 32721064 | 32721056 | ID=Msa0160410-mRNA-1:cds;Parent=Msa0160410-mRNA-1 |
| chr1_4 | three_prime_UTR | 32721065 | 32721801 | 32721065 | ID=Msa0160410-mRNA-1:three_prime_utr;Parent=Msa0160410-mRNA-1 |
| chr1_4 | three_prime_UTR | 32722911 | 32723239 | 32722911 | ID=Msa0160410-mRNA-1:three_prime_utr;Parent=Msa0160410-mRNA-1 |
| chr1_4 | three_prime_UTR | 32723330 | 32723500 | 32723330 | ID=Msa0160410-mRNA-1:three_prime_utr;Parent=Msa0160410-mRNA-1 |
| chr1_4 | three_prime_UTR | 32723694 | 32723759 | 32723694 | ID=Msa0160410-mRNA-1:three_prime_utr;Parent=Msa0160410-mRNA-1 |
| chr1_4 | three_prime_UTR | 32723869 | 32723937 | 32723869 | ID=Msa0160410-mRNA-1:three_prime_utr;Parent=Msa0160410-mRNA-1 |
| chr1_4 | three_prime_UTR | 32724554 | 32724893 | 32724554 | ID=Msa0160410-mRNA-1:three_prime_utr;Parent=Msa0160410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
