AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160400 MtrunA17_Chr1g0174271 71.783 443 55 9 2 438 4 382 0.0 589
Msa0160400 MtrunA17_Chr7g0258181 54.425 226 74 3 204 426 116 315 2.22e-69 223
Msa0160400 MtrunA17_Chr4g0032951 46.570 277 124 10 167 431 168 432 6.11e-64 212
Msa0160400 MtrunA17_Chr2g0329041 49.174 242 107 6 197 431 176 408 9.58e-64 211
Msa0160400 MtrunA17_Chr3g0087771 42.500 240 112 6 199 431 179 399 3.54e-45 162
Msa0160400 MtrunA17_Chr8g0351881 43.111 225 112 5 213 426 169 388 1.75e-37 140
Msa0160400 MtrunA17_Chr4g0014771 69.663 89 25 1 338 426 104 190 3.51e-37 134
Msa0160400 MtrunA17_Chr1g0213791 62.617 107 37 2 321 426 233 337 6.16e-36 135
Msa0160400 MtrunA17_Chr4g0074161 59.420 69 27 1 353 421 205 272 9.06e-18 85.1
Msa0160400 MtrunA17_Chr1g0190731 53.333 75 34 1 347 421 186 259 1.38e-16 80.9
Msa0160400 MtrunA17_Chr1g0152131 53.425 73 34 0 352 424 258 330 2.14e-16 80.9
Msa0160400 MtrunA17_Chr3g0131771 56.716 67 29 0 354 420 147 213 1.38e-15 77.4
Msa0160400 MtrunA17_Chr5g0421111 53.521 71 33 0 354 424 365 435 3.10e-15 77.8
Msa0160400 MtrunA17_Chr3g0144641 55.072 69 31 0 354 422 191 259 4.07e-15 76.6
Msa0160400 MtrunA17_Chr7g0234761 53.623 69 32 0 354 422 317 385 7.72e-15 76.6
Msa0160400 MtrunA17_Chr8g0365941 53.623 69 32 0 354 422 305 373 1.04e-14 75.9
Msa0160400 MtrunA17_Chr8g0339091 53.731 67 31 0 354 420 291 357 1.79e-14 75.5
Msa0160400 MtrunA17_Chr4g0035101 50.000 76 36 1 347 422 138 211 2.46e-14 73.9
Msa0160400 MtrunA17_Chr8g0385911 52.174 69 33 0 354 422 145 213 3.27e-14 73.6
Msa0160400 MtrunA17_Chr8g0363921 50.746 67 33 0 354 420 151 217 1.59e-13 70.9
Msa0160400 MtrunA17_Chr5g0415291 49.254 67 34 0 354 420 112 178 2.08e-12 66.6
Msa0160400 MtrunA17_Chr7g0258161 45.070 71 39 0 352 422 171 241 6.33e-12 66.6
Msa0160400 MtrunA17_Chr1g0152651 54.545 66 29 1 353 418 273 337 7.34e-12 66.6
Msa0160400 MtrunA17_Chr3g0134741 54.545 66 29 1 353 418 228 292 9.78e-12 65.9
Msa0160400 MtrunA17_Chr1g0174161 43.662 71 40 0 352 422 158 228 1.88e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160400 AT2G42280.1 39.866 449 159 11 1 431 1 356 1.11e-78 248
Msa0160400 AT2G42280.3 39.030 433 153 11 1 415 1 340 4.93e-70 226
Msa0160400 AT1G51140.1 70.874 103 25 2 324 426 279 376 1.20e-43 157
Msa0160400 AT1G35460.1 68.966 87 25 1 340 426 169 253 3.37e-38 139
Msa0160400 AT2G42280.2 33.162 389 149 11 1 371 1 296 5.76e-38 140
Msa0160400 AT1G05805.1 42.601 223 100 9 205 426 160 355 5.94e-38 141
Msa0160400 AT2G43140.1 62.857 105 38 1 323 426 102 206 2.83e-37 135
Msa0160400 AT2G43140.2 62.857 105 38 1 323 426 199 303 1.03e-36 137
Msa0160400 AT4G09180.1 65.909 88 28 1 340 427 172 257 1.23e-34 130
Msa0160400 AT1G35460.2 79.245 53 9 1 340 392 169 219 4.80e-23 97.4
Msa0160400 AT2G24260.2 60.870 69 26 1 353 421 34 101 1.29e-18 85.5
Msa0160400 AT2G24260.1 60.000 70 27 1 352 421 136 204 5.16e-18 85.5
Msa0160400 AT4G30980.1 59.420 69 27 1 353 421 129 196 1.15e-17 84.0
Msa0160400 AT4G30980.2 57.333 75 30 2 347 421 172 244 2.36e-17 83.6
Msa0160400 AT5G58010.1 55.072 69 30 1 353 421 98 165 9.75e-17 80.9
Msa0160400 AT4G34530.1 56.522 69 30 0 354 422 172 240 5.42e-16 79.3
Msa0160400 AT1G10120.2 54.930 71 32 0 354 424 206 276 1.26e-15 78.6
Msa0160400 AT1G10120.1 54.930 71 32 0 354 424 206 276 1.26e-15 78.6
Msa0160400 AT5G50915.3 56.716 67 29 0 354 420 136 202 1.90e-15 76.6
Msa0160400 AT5G50915.4 56.716 67 29 0 354 420 136 202 1.90e-15 76.6
Msa0160400 AT5G50915.1 56.716 67 29 0 354 420 136 202 2.33e-15 76.6
Msa0160400 AT5G50915.2 56.716 67 29 0 354 420 136 202 2.33e-15 76.6
Msa0160400 AT1G68920.3 52.113 71 34 0 354 424 302 372 5.03e-15 77.4
Msa0160400 AT1G68920.1 52.113 71 34 0 354 424 303 373 5.52e-15 77.4
Msa0160400 AT1G68920.4 52.113 71 34 0 354 424 303 373 5.52e-15 77.4
Msa0160400 AT1G68920.2 52.113 71 34 0 354 424 303 373 5.52e-15 77.4
Msa0160400 AT1G25330.1 45.055 91 48 2 345 434 96 185 9.94e-15 73.6
Msa0160400 AT3G07340.2 53.731 67 31 0 354 420 258 324 2.42e-14 75.1
Msa0160400 AT3G07340.1 53.731 67 31 0 354 420 258 324 2.65e-14 75.1
Msa0160400 AT1G26260.5 55.224 67 30 0 354 420 201 267 2.66e-14 74.7
Msa0160400 AT1G26260.4 55.224 67 30 0 354 420 223 289 3.24e-14 74.3
Msa0160400 AT1G26260.1 55.224 67 30 0 354 420 223 289 3.24e-14 74.3
Msa0160400 AT1G26260.6 55.224 67 30 0 354 420 223 289 3.24e-14 74.3
Msa0160400 AT1G26260.2 55.224 67 30 0 354 420 223 289 3.24e-14 74.3
Msa0160400 AT1G26260.3 55.224 67 30 0 354 420 172 238 3.36e-14 73.9
Msa0160400 AT5G48560.2 47.368 76 40 0 354 429 301 376 3.56e-14 74.7
Msa0160400 AT5G48560.1 47.368 76 40 0 354 429 301 376 3.56e-14 74.7
Msa0160400 AT3G23690.1 50.725 69 34 0 354 422 191 259 2.27e-13 71.6
Msa0160400 AT1G59640.1 50.746 67 33 0 354 420 136 202 4.13e-13 69.7
Msa0160400 AT2G42300.1 46.053 76 40 1 348 422 178 253 5.35e-13 70.1
Msa0160400 AT2G42300.4 46.053 76 40 1 348 422 178 253 5.52e-13 69.3
Msa0160400 AT1G18400.2 47.826 69 36 0 352 420 143 211 6.87e-13 68.6
Msa0160400 AT1G18400.1 47.826 69 36 0 352 420 143 211 9.65e-13 68.6
Msa0160400 AT1G73830.2 49.254 67 34 0 354 420 147 213 9.92e-13 68.6
Msa0160400 AT1G73830.1 49.254 67 34 0 354 420 147 213 1.17e-12 68.2
Msa0160400 AT2G18300.1 47.826 69 36 0 354 422 185 253 1.35e-12 68.9
Msa0160400 AT2G18300.2 47.826 69 36 0 354 422 185 253 1.36e-12 68.9
Msa0160400 AT4G36540.2 45.455 77 40 1 344 420 133 207 1.64e-12 68.6
Msa0160400 AT3G57800.2 46.479 71 38 0 352 422 202 272 1.64e-12 68.9
Msa0160400 AT1G59640.2 50.746 67 33 0 354 420 136 202 1.64e-12 68.9
Msa0160400 AT4G36540.1 45.455 77 40 1 344 420 133 207 1.75e-12 68.6
Msa0160400 AT2G18300.3 47.826 69 36 0 354 422 185 253 1.83e-12 68.9
Msa0160400 AT1G27740.1 52.857 70 32 1 349 418 162 230 6.88e-12 65.9
Msa0160400 AT2G14760.1 54.545 66 29 1 353 418 236 300 8.75e-12 66.6
Msa0160400 AT4G33880.1 54.545 66 29 1 353 418 265 329 9.23e-12 66.6
Msa0160400 AT5G62610.2 46.269 67 36 0 354 420 153 219 1.95e-11 65.1
Msa0160400 AT5G62610.1 46.269 67 36 0 354 420 153 219 1.95e-11 65.1
Msa0160400 AT4G02590.3 53.333 75 34 1 347 421 76 149 9.99e-11 62.4

Find 122 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGATAATAATAATATTTC+TGG 0.136535 1_4:-32699513 Msa0160400:CDS
CCAATAGTATTTATTTATAT+TGG 0.203913 1_4:-32696283 Msa0160400:three_prime_UTR
GACCTACATGCTTTGTATTC+AGG 0.204114 1_4:+32696365 None:intergenic
TCTGCTATGGATGGTTCTTT+TGG 0.221242 1_4:-32699402 Msa0160400:CDS
TTATTTATATTTACATATAA+TGG 0.227676 1_4:-32699709 Msa0160400:exon
CACAACCAATCCAATTCTTC+TGG 0.235104 1_4:-32699666 Msa0160400:CDS
ATTAAGAGTAGAATATTTAT+TGG 0.243890 1_4:+32696240 None:intergenic
GGAAACTATGCCACGGTAAA+TGG 0.245415 1_4:-32698128 Msa0160400:CDS
AAAGATAGGGATAAATAAAA+AGG 0.251395 1_4:+32699969 None:intergenic
TGTTCTAAGGAAATGAATTC+TGG 0.257572 1_4:-32699483 Msa0160400:CDS
TCCAACATTTCCTTTCAAAA+TGG 0.262412 1_4:-32699282 Msa0160400:intron
CTGGATTCCCCTATAGTTCT+TGG 0.264196 1_4:-32697929 Msa0160400:CDS
TTCTGGTTCATCTTGTTCTA+AGG 0.264253 1_4:-32699496 Msa0160400:CDS
CCAATATAAATAAATACTAT+TGG 0.311806 1_4:+32696283 None:intergenic
ACATCACATGATAAGAGTTT+TGG 0.326645 1_4:-32699348 Msa0160400:CDS
ATTTGTACCTTATCCATGTT+TGG 0.331656 1_4:+32697317 None:intergenic
ATAGTTTCCAACGCCTTTAA+TGG 0.333174 1_4:+32698142 None:intergenic
TTCGCAAAAGTACTGGGATT+TGG 0.334187 1_4:-32698396 Msa0160400:CDS
TTTGGATTGGTTGGTTCATT+GGG 0.337311 1_4:-32699384 Msa0160400:CDS
AGTATCGTTCCAAGAACTAT+AGG 0.348915 1_4:+32697920 None:intergenic
TGAAAGGGACAAGGAAAGAT+AGG 0.351902 1_4:+32699955 None:intergenic
TCAAGAAATGCTTCTTCCTT+GGG 0.356423 1_4:-32698047 Msa0160400:CDS
ACGAAGCAACCCAGAAGAAT+TGG 0.359803 1_4:+32699656 None:intergenic
TTCAAGAAATGCTTCTTCCT+TGG 0.367694 1_4:-32698048 Msa0160400:CDS
CAATACCGGGTTCGATTCCC+AGG 0.369581 1_4:+32699123 None:intergenic
CCGTTGCTACCTCCGTCATC+AGG 0.377114 1_4:+32697972 None:intergenic
GGAGCCCAAGCAACTTGGTT+TGG 0.379148 1_4:-32699065 Msa0160400:intron
GCTCCTTCCAAGGACGTTCC+CGG 0.380905 1_4:+32699099 None:intergenic
AGGACGTTCCCGGGCAATAC+CGG 0.388254 1_4:+32699109 None:intergenic
ACTCATCAGCGTGGAGGGCT+TGG 0.396464 1_4:-32697741 Msa0160400:intron
GAACCAATTCGCAAAAGTAC+TGG 0.398703 1_4:-32698403 Msa0160400:CDS
GTTTGCTCGTTTATCACTTA+GGG 0.399495 1_4:+32696507 None:intergenic
GTATCGTTCCAAGAACTATA+GGG 0.399539 1_4:+32697921 None:intergenic
ATGAATTCTGGTTATGCTGC+TGG 0.416060 1_4:-32699471 Msa0160400:CDS
ATTGGTTGGTTCATTGGGAA+TGG 0.419938 1_4:-32699379 Msa0160400:CDS
AGGTCCTCACCACAGCAAAA+AGG 0.421052 1_4:-32696347 Msa0160400:three_prime_UTR
CATTATCCTAGACATGGTTC+TGG 0.422292 1_4:-32699438 Msa0160400:CDS
TGGTTCAAATCTTCTTAGAC+AGG 0.423641 1_4:-32699328 Msa0160400:CDS
ACCTACATGCTTTGTATTCA+GGG 0.435275 1_4:+32696366 None:intergenic
TTCTACTTCAAGTTCTGCTA+TGG 0.441169 1_4:-32699415 Msa0160400:CDS
AGTACAAGTTCGCGGTTCTC+TGG 0.443005 1_4:-32698367 Msa0160400:CDS
AACGGTGATTCTACTCACTA+TGG 0.453244 1_4:-32697954 Msa0160400:CDS
AGTTTGCTCGTTTATCACTT+AGG 0.455813 1_4:+32696506 None:intergenic
GTATTGCCCGGGAACGTCCT+TGG 0.458535 1_4:-32699106 Msa0160400:CDS
ACAACCAATCCAATTCTTCT+GGG 0.461387 1_4:-32699665 Msa0160400:CDS
CCGCAGGAGCCCAAGCAACT+TGG 0.462753 1_4:-32699070 Msa0160400:CDS
GATTCTACTCACTATGGCTC+TGG 0.464368 1_4:-32697948 Msa0160400:CDS
ACCCTCTCGGCAATGCTTCG+AGG 0.468775 1_4:+32697582 None:intergenic
ATCATCTCAGATGAAGTGTT+TGG 0.470848 1_4:+32697681 None:intergenic
GTGCTTAGAGGCATGCGCAC+TGG 0.472780 1_4:-32699161 Msa0160400:intron
TGAAACCAAACCAAGTTGCT+TGG 0.475684 1_4:+32699060 None:intergenic
ACTTCAAGTTCTGCTATGGA+TGG 0.477883 1_4:-32699411 Msa0160400:CDS
AAGGAAGAAGCATTTCTTGA+AGG 0.479751 1_4:+32698050 None:intergenic
TCCTCGAAGCATTGCCGAGA+GGG 0.481258 1_4:-32697583 Msa0160400:intron
GAAACCAAACCAAGTTGCTT+GGG 0.483808 1_4:+32699061 None:intergenic
CTCCTTCCAAGGACGTTCCC+GGG 0.491095 1_4:+32699100 None:intergenic
TGGAAGGAGCTCCTTGCCGC+AGG 0.493251 1_4:-32699086 Msa0160400:CDS
GAATCGAACCCGGTATTGCC+CGG 0.493416 1_4:-32699118 Msa0160400:CDS
GCTTGTTCCAAACATGGATA+AGG 0.495622 1_4:-32697324 Msa0160400:intron
TCACCAGAAGAAGGAAAAGA+AGG 0.496661 1_4:+32699594 None:intergenic
CAGAGAGAGATCAAGTGAAA+GGG 0.497536 1_4:+32699940 None:intergenic
AGGAAGAAGCATTTCTTGAA+GGG 0.507126 1_4:+32698051 None:intergenic
TTTCAGCTTAGGAACAAAGC+AGG 0.511021 1_4:+32699797 None:intergenic
CACATCAGACATGTTGGACT+TGG 0.512180 1_4:-32697185 Msa0160400:CDS
ATGTTGGAGAAAAGACCAGC+AGG 0.517169 1_4:+32699297 None:intergenic
ATCTCAGTGGTTTGAAAAGA+GGG 0.517303 1_4:-32697881 Msa0160400:CDS
ACAGAGAGAGATCAAGTGAA+AGG 0.517989 1_4:+32699939 None:intergenic
TTCAGCTTAGGAACAAAGCA+GGG 0.518265 1_4:+32699798 None:intergenic
TTGCTTGGGCTCCTGCGGCA+AGG 0.519686 1_4:+32699075 None:intergenic
AATCTCAGTGGTTTGAAAAG+AGG 0.526692 1_4:-32697882 Msa0160400:CDS
AGGTAACCTGAGTGTTCAAT+CGG 0.530212 1_4:+32698075 None:intergenic
TTATTAGAATCACCAGAAGA+AGG 0.532913 1_4:+32699585 None:intergenic
GGACGTTCCCGGGCAATACC+GGG 0.534236 1_4:+32699110 None:intergenic
AGAAGCATTTCTTGAAGGGA+AGG 0.535438 1_4:+32698055 None:intergenic
GAAAGGGACAAGGAAAGATA+GGG 0.536386 1_4:+32699956 None:intergenic
GCGGCAAGGAGCTCCTTCCA+AGG 0.540937 1_4:+32699089 None:intergenic
GCAACCCAGAAGAATTGGAT+TGG 0.541202 1_4:+32699661 None:intergenic
AACCAATTCGCAAAAGTACT+GGG 0.542472 1_4:-32698402 Msa0160400:CDS
AGACAGGGTAGTTCCCCTGC+TGG 0.543236 1_4:-32699312 Msa0160400:CDS
AACTAACACATCAGACATGT+TGG 0.546138 1_4:-32697191 Msa0160400:CDS
AAGAAGAGAAGAGGTGGCTA+TGG 0.548362 1_4:+32699888 None:intergenic
GCAAGAGCTTGTTCCAAACA+TGG 0.548846 1_4:-32697330 Msa0160400:CDS
CCACCTCATTATCCTAGACA+TGG 0.549227 1_4:-32699444 Msa0160400:CDS
AATCGAACCCGGTATTGCCC+GGG 0.555018 1_4:-32699117 Msa0160400:CDS
TGTAAAATTCGAGCGAAACG+AGG 0.565652 1_4:-32697618 Msa0160400:CDS
TTCATCTGAGATGATTGCTA+TGG 0.566845 1_4:-32697673 Msa0160400:CDS
CCAAGTTGCTTGGGCTCCTG+CGG 0.566903 1_4:+32699070 None:intergenic
CGTTGCTACCTCCGTCATCA+GGG 0.572371 1_4:+32697973 None:intergenic
GAGCAAACTGCAAATGTATG+AGG 0.578835 1_4:-32696492 Msa0160400:CDS
TGCCCGGGAACGTCCTTGGA+AGG 0.580649 1_4:-32699102 Msa0160400:CDS
CGCAATTCAAAGAAGAGAAG+AGG 0.583762 1_4:+32699879 None:intergenic
AATACCGGGTTCGATTCCCA+GGG 0.588943 1_4:+32699124 None:intergenic
GTAGAACCAGAACCATGTCT+AGG 0.597203 1_4:+32699432 None:intergenic
GAACCATGTCTAGGATAATG+AGG 0.601649 1_4:+32699441 None:intergenic
GGTATGCGAGTACAAGTTCG+CGG 0.608964 1_4:-32698375 Msa0160400:CDS
TAAACAAAACCATACCCTCT+CGG 0.609076 1_4:+32697569 None:intergenic
GCCACGGTAAATGGTAGTAA+CGG 0.609242 1_4:-32698119 Msa0160400:CDS
GAGATCAAGTGAAAGGGACA+AGG 0.614591 1_4:+32699946 None:intergenic
CCTGATGACGGAGGTAGCAA+CGG 0.614696 1_4:-32697972 Msa0160400:CDS
TATCGTTCCAAGAACTATAG+GGG 0.622302 1_4:+32697922 None:intergenic
GGTTCAAATCTTCTTAGACA+GGG 0.631058 1_4:-32699327 Msa0160400:CDS
TCGCGGTTCTCTGGTGAATG+CGG 0.632822 1_4:-32698358 Msa0160400:intron
GCCGTTACTACCATTTACCG+TGG 0.637465 1_4:+32698118 None:intergenic
GAAGCAACTAGCCCTGATGA+CGG 0.637823 1_4:-32697984 Msa0160400:CDS
TATCTCTGAAATAGATAGCG+AGG 0.637851 1_4:-32698012 Msa0160400:CDS
GTGTTCAATCGGTTAATAGA+CGG 0.638059 1_4:+32698086 None:intergenic
TGTTGGAGAAAAGACCAGCA+GGG 0.641864 1_4:+32699298 None:intergenic
GATATGTGACAATATTCCCA+AGG 0.645646 1_4:+32698031 None:intergenic
AATTCAAAGAAGAGAAGAGG+TGG 0.659106 1_4:+32699882 None:intergenic
TTATGAGAGAGAGAGTGTGA+AGG 0.659468 1_4:+32700058 None:intergenic
TATTAACCGATTGAACACTC+AGG 0.669123 1_4:-32698081 Msa0160400:CDS
GTTGGAGAAAAGACCAGCAG+GGG 0.676212 1_4:+32699299 None:intergenic
TCAGCTTAGGAACAAAGCAG+GGG 0.677918 1_4:+32699799 None:intergenic
ACCCTGAATACAAAGCATGT+AGG 0.683254 1_4:-32696367 Msa0160400:three_prime_UTR
AGGCGTTGGAAACTATGCCA+CGG 0.688382 1_4:-32698135 Msa0160400:CDS
ATCCTCGAAGCATTGCCGAG+AGG 0.702830 1_4:-32697584 Msa0160400:CDS
CAAATGTATGAGGATGCAGA+AGG 0.707448 1_4:-32696482 Msa0160400:CDS
GCAACTAGCCCTGATGACGG+AGG 0.713476 1_4:-32697981 Msa0160400:CDS
CCATGTCTAGGATAATGAGG+TGG 0.714763 1_4:+32699444 None:intergenic
TACCGGGTTCGATTCCCAGG+GGG 0.724776 1_4:+32699126 None:intergenic
ATACCGGGTTCGATTCCCAG+GGG 0.724847 1_4:+32699125 None:intergenic
TCGTTCACAGAAAATCTCAG+TGG 0.729969 1_4:-32697894 Msa0160400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATGATTATGAT+GGG - chr1_4:32697538-32697557 Msa0160400:intron 10.0%
!! TTGGATAATTAATTAATTAA+TGG - chr1_4:32698986-32699005 Msa0160400:intron 10.0%
!! TTACTGTAAAAAGATTAAAA+GGG + chr1_4:32696515-32696534 None:intergenic 15.0%
!!! ATAAAGTTACTAAACATTTT+TGG - chr1_4:32696680-32696699 Msa0160400:intron 15.0%
!!! TAAAGTTACTAAACATTTTT+GGG - chr1_4:32696681-32696700 Msa0160400:intron 15.0%
!! AACGATAATAATAATATTTC+TGG - chr1_4:32696733-32696752 Msa0160400:intron 15.0%
!!! TATGTTTTTTGTTGTTATTT+TGG - chr1_4:32696990-32697009 Msa0160400:intron 15.0%
!! TTTCATTATTTATAGTTGTA+GGG - chr1_4:32697204-32697223 Msa0160400:intron 15.0%
!! TATGAGTAATAATATTAATG+AGG - chr1_4:32697291-32697310 Msa0160400:intron 15.0%
!! GAAAAAAAAAATGATTATGA+TGG - chr1_4:32697537-32697556 Msa0160400:intron 15.0%
!! AAAAAAAAATGATTATGATG+GGG - chr1_4:32697539-32697558 Msa0160400:intron 15.0%
!!! ACATTTAGATTTTTCAATTA+GGG + chr1_4:32697961-32697980 None:intergenic 15.0%
!!! AACATTTAGATTTTTCAATT+AGG + chr1_4:32697962-32697981 None:intergenic 15.0%
!! ATATATAAGGAGAATTAATT+TGG - chr1_4:32699126-32699145 Msa0160400:CDS 15.0%
!! TTGCTAATTCATAAAAATTA+TGG + chr1_4:32699227-32699246 None:intergenic 15.0%
!! TTACAAATTCATAAAACTTA+AGG - chr1_4:32699602-32699621 Msa0160400:CDS 15.0%
!! ATTTATGAAATTATAACCAT+TGG + chr1_4:32699638-32699657 None:intergenic 15.0%
!! CCAATATAAATAAATACTAT+TGG + chr1_4:32699966-32699985 None:intergenic 15.0%
!! CCAATAGTATTTATTTATAT+TGG - chr1_4:32699963-32699982 Msa0160400:five_prime_UTR 15.0%
!!! TTATATTGGTAATTTTGTAT+AGG - chr1_4:32699977-32699996 Msa0160400:five_prime_UTR 15.0%
!! ATTAAGAGTAGAATATTTAT+TGG + chr1_4:32700009-32700028 None:intergenic 15.0%
!! AAGATAGGGATAAATAAAAA+GGG + chr1_4:32696279-32696298 None:intergenic 20.0%
!! AAAGATAGGGATAAATAAAA+AGG + chr1_4:32696280-32696299 None:intergenic 20.0%
!!! TTAAAAAAGTTTTTCAGCTT+AGG + chr1_4:32696463-32696482 None:intergenic 20.0%
!! GTTACTGTAAAAAGATTAAA+AGG + chr1_4:32696516-32696535 None:intergenic 20.0%
!!! AAACATATTACCATTTTGAA+AGG + chr1_4:32696977-32696996 None:intergenic 20.0%
!!! TTTTTGTTGTTATTTTGGTT+TGG - chr1_4:32696995-32697014 Msa0160400:intron 20.0%
!! GTTTCATTATTTATAGTTGT+AGG - chr1_4:32697203-32697222 Msa0160400:intron 20.0%
!!! TATGAATGATTTTTTGTTGT+AGG - chr1_4:32697359-32697378 Msa0160400:CDS 20.0%
!!! ATGAATGATTTTTTGTTGTA+GGG - chr1_4:32697360-32697379 Msa0160400:CDS 20.0%
!!! TTAATGTTGTTTTAGTTTTC+TGG - chr1_4:32697399-32697418 Msa0160400:intron 20.0%
!! GAATTTAATGATTCAATTTG+TGG - chr1_4:32697589-32697608 Msa0160400:CDS 20.0%
!!! TGTTGAAGTTATATTTTCAT+TGG - chr1_4:32697717-32697736 Msa0160400:CDS 20.0%
!!! AGTTATATTTTCATTGGATA+TGG - chr1_4:32697723-32697742 Msa0160400:CDS 20.0%
!! TATATACAATTCATTCGTAA+TGG - chr1_4:32698043-32698062 Msa0160400:CDS 20.0%
!!! TTTTGCATATAAAACATTTG+AGG - chr1_4:32698772-32698791 Msa0160400:intron 20.0%
!! TTTGCATATAAAACATTTGA+GGG - chr1_4:32698773-32698792 Msa0160400:intron 20.0%
!!! ATTAATGGTATAGTTTTGTT+TGG - chr1_4:32699001-32699020 Msa0160400:intron 20.0%
!! AAATCTTCAAAAACAATTCA+AGG - chr1_4:32699100-32699119 Msa0160400:CDS 20.0%
!!! GTTATTTTCACTTGAAAATT+TGG + chr1_4:32699420-32699439 None:intergenic 20.0%
!! ATCATTAGCTATACATAATT+GGG + chr1_4:32699456-32699475 None:intergenic 20.0%
!! AATCATTAGCTATACATAAT+TGG + chr1_4:32699457-32699476 None:intergenic 20.0%
!! TAATAGCTAAACTTAATTCA+AGG - chr1_4:32699546-32699565 Msa0160400:CDS 20.0%
!!! TTTTTGTGTTGAAAATTTCA+AGG - chr1_4:32699574-32699593 Msa0160400:CDS 20.0%
!!! TTTTGAAAAGAGTGAAAGAA+AGG + chr1_4:32696220-32696239 None:intergenic 25.0%
! CAAGAGAACAAAACAAAAAT+AGG + chr1_4:32696403-32696422 None:intergenic 25.0%
!! TTCTCTGTTTTCACATATAA+TGG - chr1_4:32696486-32696505 Msa0160400:CDS 25.0%
! ATTAATGAGGATATGTGTAT+TGG - chr1_4:32697304-32697323 Msa0160400:intron 25.0%
!! TAATGAGAATATTGCTACTT+TGG - chr1_4:32697456-32697475 Msa0160400:intron 25.0%
! TTCAAGTGAGATAAGAATAA+GGG + chr1_4:32697628-32697647 None:intergenic 25.0%
!! TTTCAAGTGAGATAAGAATA+AGG + chr1_4:32697629-32697648 None:intergenic 25.0%
!! ATATTTTCATTGGATATGGA+AGG - chr1_4:32697727-32697746 Msa0160400:CDS 25.0%
!! TATTTTCATTGGATATGGAA+GGG - chr1_4:32697728-32697747 Msa0160400:CDS 25.0%
!! TGATAATGTTCATAAATTGC+AGG - chr1_4:32698073-32698092 Msa0160400:CDS 25.0%
! GATAATGTTCATAAATTGCA+GGG - chr1_4:32698074-32698093 Msa0160400:CDS 25.0%
!! AAAAATGTTTTCTGATATGC+AGG - chr1_4:32698402-32698421 Msa0160400:CDS 25.0%
!! GAAGCTTAATTCACTTATTT+TGG - chr1_4:32698434-32698453 Msa0160400:intron 25.0%
! AGATGCTTGAAAAAACTAAT+TGG + chr1_4:32698713-32698732 None:intergenic 25.0%
!! TTGAAGAAGTAACTATTTTC+AGG - chr1_4:32698856-32698875 Msa0160400:intron 25.0%
!!! ACATCAATTTTGTTTGACTT+TGG - chr1_4:32698957-32698976 Msa0160400:intron 25.0%
!! TGTTTGACTTTGGAAAATAT+TGG - chr1_4:32698967-32698986 Msa0160400:intron 25.0%
! CAATTCAAGGTACATATATA+AGG - chr1_4:32699113-32699132 Msa0160400:CDS 25.0%
!!! AAGGAGAATTAATTTGGTTT+TGG - chr1_4:32699132-32699151 Msa0160400:CDS 25.0%
! AATTTCTGATTCACTTGTAA+GGG + chr1_4:32699169-32699188 None:intergenic 25.0%
! AAATTTCTGATTCACTTGTA+AGG + chr1_4:32699170-32699189 None:intergenic 25.0%
! ATCAAAATAGTCTCTCTATT+AGG - chr1_4:32699274-32699293 Msa0160400:intron 25.0%
! AATTCCACATCATCATTTAA+GGG + chr1_4:32699326-32699345 None:intergenic 25.0%
! AAATTCCACATCATCATTTA+AGG + chr1_4:32699327-32699346 None:intergenic 25.0%
!! TTTGTTATGACTAAAAGCTT+AGG - chr1_4:32699379-32699398 Msa0160400:CDS 25.0%
!! TTTCAAGTGAAAATAACTCT+CGG - chr1_4:32699423-32699442 Msa0160400:CDS 25.0%
! ATCAATCACTATGATGATAA+GGG + chr1_4:32699675-32699694 None:intergenic 25.0%
! TATCAATCACTATGATGATA+AGG + chr1_4:32699676-32699695 None:intergenic 25.0%
! TCATAGTGATTGATATTAAC+TGG - chr1_4:32699681-32699700 Msa0160400:CDS 25.0%
!!! AGATTTTGAAACAGTGAACT+AGG + chr1_4:32696628-32696647 None:intergenic 30.0%
TTATTAGAATCACCAGAAGA+AGG + chr1_4:32696664-32696683 None:intergenic 30.0%
!! GTTACTAAACATTTTTGGGA+TGG - chr1_4:32696685-32696704 Msa0160400:intron 30.0%
!! TGTTCTAAGGAAATGAATTC+TGG - chr1_4:32696763-32696782 Msa0160400:intron 30.0%
! ACATCACATGATAAGAGTTT+TGG - chr1_4:32696898-32696917 Msa0160400:intron 30.0%
TCCAACATTTCCTTTCAAAA+TGG - chr1_4:32696964-32696983 Msa0160400:intron 30.0%
!! ACCATTTTGAAAGGAAATGT+TGG + chr1_4:32696968-32696987 None:intergenic 30.0%
GTTAATTGCAATGACCTATA+AGG - chr1_4:32697487-32697506 Msa0160400:intron 30.0%
AATCGTGGTATGTATGAAAA+TGG - chr1_4:32697515-32697534 Msa0160400:intron 30.0%
! ATTTTCATTGGATATGGAAG+GGG - chr1_4:32697729-32697748 Msa0160400:CDS 30.0%
! ATTTTACAAGGAACAGAATC+TGG + chr1_4:32698616-32698635 None:intergenic 30.0%
ATTTGTACCTTATCCATGTT+TGG + chr1_4:32698932-32698951 None:intergenic 30.0%
!!! AATGGTATAGTTTTGTTTGG+AGG - chr1_4:32699004-32699023 Msa0160400:intron 30.0%
TTGACATTTCTTCATGTTCT+TGG - chr1_4:32699027-32699046 Msa0160400:intron 30.0%
TGATCGATAGTTACAATTTC+AGG + chr1_4:32699197-32699216 None:intergenic 30.0%
GTATAGCTAATGATTTCACA+TGG - chr1_4:32699462-32699481 Msa0160400:CDS 30.0%
! TTAAGGACGAATTTTACCAA+TGG - chr1_4:32699619-32699638 Msa0160400:CDS 30.0%
AATTCAAAGAAGAGAAGAGG+TGG + chr1_4:32696367-32696386 None:intergenic 35.0%
ACAACCAATCCAATTCTTCT+GGG - chr1_4:32696581-32696600 Msa0160400:intron 35.0%
!! TTCTGGTTCATCTTGTTCTA+AGG - chr1_4:32696750-32696769 Msa0160400:intron 35.0%
! TTCTACTTCAAGTTCTGCTA+TGG - chr1_4:32696831-32696850 Msa0160400:intron 35.0%
! TATGGATGGTTCTTTTGGAT+TGG - chr1_4:32696849-32696868 Msa0160400:intron 35.0%
!!! TTTTGGATTGGTTGGTTCAT+TGG - chr1_4:32696861-32696880 Msa0160400:intron 35.0%
!! TTTGGATTGGTTGGTTCATT+GGG - chr1_4:32696862-32696881 Msa0160400:intron 35.0%
TGGTTCAAATCTTCTTAGAC+AGG - chr1_4:32696918-32696937 Msa0160400:intron 35.0%
GGTTCAAATCTTCTTAGACA+GGG - chr1_4:32696919-32696938 Msa0160400:intron 35.0%
!! ATAGTTGTAGGGTGTTCTTT+TGG - chr1_4:32697215-32697234 Msa0160400:intron 35.0%
!! TTTGTTGTAGGGTGTTCTTT+TGG - chr1_4:32697371-32697390 Msa0160400:CDS 35.0%
ATGGGGACATGTACAATTTA+TGG - chr1_4:32697556-32697575 Msa0160400:intron 35.0%
! AGATCGACTCAATTCAAACT+AGG + chr1_4:32697667-32697686 None:intergenic 35.0%
! ATTGAGTCGATCTCAGTTTT+AGG - chr1_4:32697674-32697693 Msa0160400:CDS 35.0%
AAGGGAAATTAAAGCACAAG+TGG + chr1_4:32697782-32697801 None:intergenic 35.0%
TTGTGAATTGATCGCGAATT+AGG - chr1_4:32697818-32697837 Msa0160400:intron 35.0%
!! AACCAATTCGCAAAAGTACT+GGG - chr1_4:32697844-32697863 Msa0160400:intron 35.0%
!! GTGATTATGAGCTTAGCTTT+TGG - chr1_4:32697919-32697938 Msa0160400:CDS 35.0%
TAACAACCTAAGATTCAGGT+GGG + chr1_4:32698007-32698026 None:intergenic 35.0%
TTAACAACCTAAGATTCAGG+TGG + chr1_4:32698008-32698027 None:intergenic 35.0%
GTCTTAACAACCTAAGATTC+AGG + chr1_4:32698011-32698030 None:intergenic 35.0%
!! TTTTCTACCATTAAAGGCGT+TGG - chr1_4:32698097-32698116 Msa0160400:CDS 35.0%
ATAGTTTCCAACGCCTTTAA+TGG + chr1_4:32698107-32698126 None:intergenic 35.0%
GTGTTCAATCGGTTAATAGA+CGG + chr1_4:32698163-32698182 None:intergenic 35.0%
TATTAACCGATTGAACACTC+AGG - chr1_4:32698165-32698184 Msa0160400:intron 35.0%
!! AGGAAGAAGCATTTCTTGAA+GGG + chr1_4:32698198-32698217 None:intergenic 35.0%
!! AAGGAAGAAGCATTTCTTGA+AGG + chr1_4:32698199-32698218 None:intergenic 35.0%
TTCAAGAAATGCTTCTTCCT+TGG - chr1_4:32698198-32698217 Msa0160400:intron 35.0%
TCAAGAAATGCTTCTTCCTT+GGG - chr1_4:32698199-32698218 Msa0160400:intron 35.0%
GATATGTGACAATATTCCCA+AGG + chr1_4:32698218-32698237 None:intergenic 35.0%
!! TATCTCTGAAATAGATAGCG+AGG - chr1_4:32698234-32698253 Msa0160400:intron 35.0%
TATCGTTCCAAGAACTATAG+GGG + chr1_4:32698327-32698346 None:intergenic 35.0%
GTATCGTTCCAAGAACTATA+GGG + chr1_4:32698328-32698347 None:intergenic 35.0%
AGTATCGTTCCAAGAACTAT+AGG + chr1_4:32698329-32698348 None:intergenic 35.0%
AATCTCAGTGGTTTGAAAAG+AGG - chr1_4:32698364-32698383 Msa0160400:CDS 35.0%
ATCTCAGTGGTTTGAAAAGA+GGG - chr1_4:32698365-32698384 Msa0160400:CDS 35.0%
!!! ATTTGTTTTACTCATCAGCG+TGG - chr1_4:32698496-32698515 Msa0160400:intron 35.0%
! ATCATCTCAGATGAAGTGTT+TGG + chr1_4:32698568-32698587 None:intergenic 35.0%
! TTCATCTGAGATGATTGCTA+TGG - chr1_4:32698573-32698592 Msa0160400:intron 35.0%
TAAACAAAACCATACCCTCT+CGG + chr1_4:32698680-32698699 None:intergenic 35.0%
AACTAACACATCAGACATGT+TGG - chr1_4:32699055-32699074 Msa0160400:intron 35.0%
ATAGTCTCTCTATTAGGTTC+TGG - chr1_4:32699280-32699299 Msa0160400:intron 35.0%
! TGATGATGTGGAATTTCATG+TGG - chr1_4:32699331-32699350 Msa0160400:CDS 35.0%
GTTTGCTCGTTTATCACTTA+GGG + chr1_4:32699742-32699761 None:intergenic 35.0%
! AGTTTGCTCGTTTATCACTT+AGG + chr1_4:32699743-32699762 None:intergenic 35.0%
ACCTACATGCTTTGTATTCA+GGG + chr1_4:32699883-32699902 None:intergenic 35.0%
! TCTAAAGAACCTTTTTGCTG+TGG + chr1_4:32699911-32699930 None:intergenic 35.0%
GAAAGGGACAAGGAAAGATA+GGG + chr1_4:32696293-32696312 None:intergenic 40.0%
TGAAAGGGACAAGGAAAGAT+AGG + chr1_4:32696294-32696313 None:intergenic 40.0%
CAGAGAGAGATCAAGTGAAA+GGG + chr1_4:32696309-32696328 None:intergenic 40.0%
ACAGAGAGAGATCAAGTGAA+AGG + chr1_4:32696310-32696329 None:intergenic 40.0%
CGCAATTCAAAGAAGAGAAG+AGG + chr1_4:32696370-32696389 None:intergenic 40.0%
TTCAGCTTAGGAACAAAGCA+GGG + chr1_4:32696451-32696470 None:intergenic 40.0%
TTTCAGCTTAGGAACAAAGC+AGG + chr1_4:32696452-32696471 None:intergenic 40.0%
CACAACCAATCCAATTCTTC+TGG - chr1_4:32696580-32696599 Msa0160400:intron 40.0%
! ACACCTTCTTTTCCTTCTTC+TGG - chr1_4:32696649-32696668 Msa0160400:intron 40.0%
TCACCAGAAGAAGGAAAAGA+AGG + chr1_4:32696655-32696674 None:intergenic 40.0%
! ATGAATTCTGGTTATGCTGC+TGG - chr1_4:32696775-32696794 Msa0160400:intron 40.0%
! GAACCATGTCTAGGATAATG+AGG + chr1_4:32696808-32696827 None:intergenic 40.0%
CATTATCCTAGACATGGTTC+TGG - chr1_4:32696808-32696827 Msa0160400:intron 40.0%
! ACTTCAAGTTCTGCTATGGA+TGG - chr1_4:32696835-32696854 Msa0160400:intron 40.0%
! TCTGCTATGGATGGTTCTTT+TGG - chr1_4:32696844-32696863 Msa0160400:intron 40.0%
!!! GATGGTTCTTTTGGATTGGT+TGG - chr1_4:32696853-32696872 Msa0160400:intron 40.0%
! ATTGGTTGGTTCATTGGGAA+TGG - chr1_4:32696867-32696886 Msa0160400:intron 40.0%
GAAACCAAACCAAGTTGCTT+GGG + chr1_4:32697188-32697207 None:intergenic 40.0%
TGAAACCAAACCAAGTTGCT+TGG + chr1_4:32697189-32697208 None:intergenic 40.0%
ACCTATAAGGCTAGAAATCG+TGG - chr1_4:32697500-32697519 Msa0160400:intron 40.0%
!! ACCACGATTTCTAGCCTTAT+AGG + chr1_4:32697504-32697523 None:intergenic 40.0%
AAAAGCTCGGGTGACAAAAA+GGG + chr1_4:32697800-32697819 None:intergenic 40.0%
CGATCAATTCACAAAAGCTC+GGG + chr1_4:32697812-32697831 None:intergenic 40.0%
GCGATCAATTCACAAAAGCT+CGG + chr1_4:32697813-32697832 None:intergenic 40.0%
! GAACCAATTCGCAAAAGTAC+TGG - chr1_4:32697843-32697862 Msa0160400:intron 40.0%
! ATCCCAGTACTTTTGCGAAT+TGG + chr1_4:32697849-32697868 None:intergenic 40.0%
!! TTCGCAAAAGTACTGGGATT+TGG - chr1_4:32697850-32697869 Msa0160400:CDS 40.0%
TGATATCCCACCTGAATCTT+AGG - chr1_4:32697998-32698017 Msa0160400:CDS 40.0%
! GCAGGGTTTTCTACCATTAA+AGG - chr1_4:32698091-32698110 Msa0160400:CDS 40.0%
AGGTAACCTGAGTGTTCAAT+CGG + chr1_4:32698174-32698193 None:intergenic 40.0%
!! AGAAGCATTTCTTGAAGGGA+AGG + chr1_4:32698194-32698213 None:intergenic 40.0%
AACGGTGATTCTACTCACTA+TGG - chr1_4:32698292-32698311 Msa0160400:intron 40.0%
TCGTTCACAGAAAATCTCAG+TGG - chr1_4:32698352-32698371 Msa0160400:intron 40.0%
TCTGATATGCAGGTATGTGT+AGG - chr1_4:32698412-32698431 Msa0160400:intron 40.0%
! CGTTTCGCTCGAATTTTACA+AGG + chr1_4:32698628-32698647 None:intergenic 40.0%
TGTAAAATTCGAGCGAAACG+AGG - chr1_4:32698628-32698647 Msa0160400:intron 40.0%
GCTTGTTCCAAACATGGATA+AGG - chr1_4:32698922-32698941 Msa0160400:intron 40.0%
TCTGATTCACTTGTAAGGGT+GGG + chr1_4:32699165-32699184 None:intergenic 40.0%
TTCTGATTCACTTGTAAGGG+TGG + chr1_4:32699166-32699185 None:intergenic 40.0%
GAGCAAACTGCAAATGTATG+AGG - chr1_4:32699754-32699773 Msa0160400:five_prime_UTR 40.0%
CAAATGTATGAGGATGCAGA+AGG - chr1_4:32699764-32699783 Msa0160400:five_prime_UTR 40.0%
ACCCTGAATACAAAGCATGT+AGG - chr1_4:32699879-32699898 Msa0160400:five_prime_UTR 40.0%
GACCTACATGCTTTGTATTC+AGG + chr1_4:32699884-32699903 None:intergenic 40.0%
GAGATCAAGTGAAAGGGACA+AGG + chr1_4:32696303-32696322 None:intergenic 45.0%
AAGAAGAGAAGAGGTGGCTA+TGG + chr1_4:32696361-32696380 None:intergenic 45.0%
TCAGCTTAGGAACAAAGCAG+GGG + chr1_4:32696450-32696469 None:intergenic 45.0%
GCAACCCAGAAGAATTGGAT+TGG + chr1_4:32696588-32696607 None:intergenic 45.0%
ACGAAGCAACCCAGAAGAAT+TGG + chr1_4:32696593-32696612 None:intergenic 45.0%
! CCATGTCTAGGATAATGAGG+TGG + chr1_4:32696805-32696824 None:intergenic 45.0%
CCACCTCATTATCCTAGACA+TGG - chr1_4:32696802-32696821 Msa0160400:intron 45.0%
GTAGAACCAGAACCATGTCT+AGG + chr1_4:32696817-32696836 None:intergenic 45.0%
TGTTGGAGAAAAGACCAGCA+GGG + chr1_4:32696951-32696970 None:intergenic 45.0%
ATGTTGGAGAAAAGACCAGC+AGG + chr1_4:32696952-32696971 None:intergenic 45.0%
ACCATTGGTGAGTCGGAAAT+CGG + chr1_4:32697047-32697066 None:intergenic 45.0%
ATTTCCGACTCACCAATGGT+AGG - chr1_4:32697047-32697066 Msa0160400:intron 45.0%
!!! GAGTCGATCTCAGTTTTAGG+TGG - chr1_4:32697677-32697696 Msa0160400:CDS 45.0%
CATTGGATATGGAAGGGGAT+TGG - chr1_4:32697734-32697753 Msa0160400:CDS 45.0%
! ATATGGAAGGGGATTGGTGA+AGG - chr1_4:32697740-32697759 Msa0160400:intron 45.0%
! TATGGAAGGGGATTGGTGAA+GGG - chr1_4:32697741-32697760 Msa0160400:intron 45.0%
CAAAAGCTCGGGTGACAAAA+AGG + chr1_4:32697801-32697820 None:intergenic 45.0%
GGAAACTATGCCACGGTAAA+TGG - chr1_4:32698118-32698137 Msa0160400:CDS 45.0%
GCCACGGTAAATGGTAGTAA+CGG - chr1_4:32698127-32698146 Msa0160400:CDS 45.0%
GATTCTACTCACTATGGCTC+TGG - chr1_4:32698298-32698317 Msa0160400:intron 45.0%
CTGGATTCCCCTATAGTTCT+TGG - chr1_4:32698317-32698336 Msa0160400:intron 45.0%
! TGTTTTACTCATCAGCGTGG+AGG - chr1_4:32698499-32698518 Msa0160400:intron 45.0%
! GTTTTACTCATCAGCGTGGA+GGG - chr1_4:32698500-32698519 Msa0160400:intron 45.0%
! GCAAGAGCTTGTTCCAAACA+TGG - chr1_4:32698916-32698935 Msa0160400:intron 45.0%
CACATCAGACATGTTGGACT+TGG - chr1_4:32699061-32699080 Msa0160400:intron 45.0%
TGGCGTTAGACAACATCATG+TGG - chr1_4:32699300-32699319 Msa0160400:CDS 45.0%
! GTGGCCCTTAAATGATGATG+TGG - chr1_4:32699319-32699338 Msa0160400:CDS 45.0%
!! AGAACCTTTTTGCTGTGGTG+AGG + chr1_4:32699906-32699925 None:intergenic 45.0%
!! TTATTTATATTTACATATAA+TGG - chr1_4:32696537-32696556 Msa0160400:intron 5.0%
GTTGGAGAAAAGACCAGCAG+GGG + chr1_4:32696950-32696969 None:intergenic 50.0%
! ACCGATTTCCGACTCACCAA+TGG - chr1_4:32697043-32697062 Msa0160400:intron 50.0%
CCAATGGTAGGCGACTAATC+CGG - chr1_4:32697059-32697078 Msa0160400:intron 50.0%
AATACCGGGTTCGATTCCCA+GGG + chr1_4:32697125-32697144 None:intergenic 50.0%
! AAGGGGATTGGTGAAGGGTA+TGG - chr1_4:32697746-32697765 Msa0160400:intron 50.0%
GGTATGCGAGTACAAGTTCG+CGG - chr1_4:32697871-32697890 Msa0160400:CDS 50.0%
AGTACAAGTTCGCGGTTCTC+TGG - chr1_4:32697879-32697898 Msa0160400:CDS 50.0%
!! AGGCGTTGGAAACTATGCCA+CGG - chr1_4:32698111-32698130 Msa0160400:CDS 50.0%
GCCGTTACTACCATTTACCG+TGG + chr1_4:32698131-32698150 None:intergenic 50.0%
GAAGCAACTAGCCCTGATGA+CGG - chr1_4:32698262-32698281 Msa0160400:intron 50.0%
GATTTCACATGGCAGTGACG+TGG - chr1_4:32699473-32699492 Msa0160400:CDS 50.0%
AGGTCCTCACCACAGCAAAA+AGG - chr1_4:32699899-32699918 Msa0160400:five_prime_UTR 50.0%
GTCGCCTACCATTGGTGAGT+CGG + chr1_4:32697054-32697073 None:intergenic 55.0%
!! CCGGATTAGTCGCCTACCAT+TGG + chr1_4:32697062-32697081 None:intergenic 55.0%
! CTAATCCGGCTCGTGCTTAG+AGG - chr1_4:32697073-32697092 Msa0160400:intron 55.0%
ATACCGGGTTCGATTCCCAG+GGG + chr1_4:32697124-32697143 None:intergenic 55.0%
CAATACCGGGTTCGATTCCC+AGG + chr1_4:32697126-32697145 None:intergenic 55.0%
GAATCGAACCCGGTATTGCC+CGG - chr1_4:32697128-32697147 Msa0160400:intron 55.0%
AATCGAACCCGGTATTGCCC+GGG - chr1_4:32697129-32697148 Msa0160400:intron 55.0%
GGAGCCCAAGCAACTTGGTT+TGG - chr1_4:32697181-32697200 Msa0160400:CDS 55.0%
TCGCGGTTCTCTGGTGAATG+CGG - chr1_4:32697888-32697907 Msa0160400:CDS 55.0%
CGTTGCTACCTCCGTCATCA+GGG + chr1_4:32698276-32698295 None:intergenic 55.0%
!! CCTGATGACGGAGGTAGCAA+CGG - chr1_4:32698274-32698293 Msa0160400:intron 55.0%
!! ATCCTCGAAGCATTGCCGAG+AGG - chr1_4:32698662-32698681 Msa0160400:intron 55.0%
!! TCCTCGAAGCATTGCCGAGA+GGG - chr1_4:32698663-32698682 Msa0160400:intron 55.0%
!! GAAGCATTGCCGAGAGGGTA+TGG - chr1_4:32698668-32698687 Msa0160400:intron 55.0%
GCAGTGACGTGGAACTCACA+TGG - chr1_4:32699484-32699503 Msa0160400:CDS 55.0%
AGACAGGGTAGTTCCCCTGC+TGG - chr1_4:32696934-32696953 Msa0160400:intron 60.0%
GCATGCCTCTAAGCACGAGC+CGG + chr1_4:32697081-32697100 None:intergenic 60.0%
! GTGCTTAGAGGCATGCGCAC+TGG - chr1_4:32697085-32697104 Msa0160400:intron 60.0%
TTCCCAGGGGGAACAACGCT+TGG + chr1_4:32697111-32697130 None:intergenic 60.0%
TTCCCCCTGGGAATCGAACC+CGG - chr1_4:32697118-32697137 Msa0160400:intron 60.0%
TACCGGGTTCGATTCCCAGG+GGG + chr1_4:32697123-32697142 None:intergenic 60.0%
AGGACGTTCCCGGGCAATAC+CGG + chr1_4:32697140-32697159 None:intergenic 60.0%
GTATTGCCCGGGAACGTCCT+TGG - chr1_4:32697140-32697159 Msa0160400:intron 60.0%
CTCCTTCCAAGGACGTTCCC+GGG + chr1_4:32697149-32697168 None:intergenic 60.0%
GCTCCTTCCAAGGACGTTCC+CGG + chr1_4:32697150-32697169 None:intergenic 60.0%
CCAAGTTGCTTGGGCTCCTG+CGG + chr1_4:32697179-32697198 None:intergenic 60.0%
!! GCAACTAGCCCTGATGACGG+AGG - chr1_4:32698265-32698284 Msa0160400:intron 60.0%
CCGTTGCTACCTCCGTCATC+AGG + chr1_4:32698277-32698296 None:intergenic 60.0%
ACTCATCAGCGTGGAGGGCT+TGG - chr1_4:32698505-32698524 Msa0160400:intron 60.0%
ACCCTCTCGGCAATGCTTCG+AGG + chr1_4:32698667-32698686 None:intergenic 60.0%
! TGGCCAAGCGTTGTTCCCCC+TGG - chr1_4:32697105-32697124 Msa0160400:intron 65.0%
! GGCCAAGCGTTGTTCCCCCT+GGG - chr1_4:32697106-32697125 Msa0160400:intron 65.0%
GGACGTTCCCGGGCAATACC+GGG + chr1_4:32697139-32697158 None:intergenic 65.0%
TGCCCGGGAACGTCCTTGGA+AGG - chr1_4:32697144-32697163 Msa0160400:intron 65.0%
GCGGCAAGGAGCTCCTTCCA+AGG + chr1_4:32697160-32697179 None:intergenic 65.0%
TGGAAGGAGCTCCTTGCCGC+AGG - chr1_4:32697160-32697179 Msa0160400:CDS 65.0%
TTGCTTGGGCTCCTGCGGCA+AGG + chr1_4:32697174-32697193 None:intergenic 65.0%
CCGCAGGAGCCCAAGCAACT+TGG - chr1_4:32697176-32697195 Msa0160400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 32696191 32700077 32696191 ID=Msa0160400;Name=Msa0160400
chr1_4 mRNA 32696191 32700077 32696191 ID=Msa0160400-mRNA-1;Parent=Msa0160400;Name=Msa0160400-mRNA-1;_AED=0.14;_eAED=0.14;_QI=365|0.57|0.75|0.75|1|1|8|268|438
chr1_4 exon 32696191 32696530 32696191 ID=Msa0160400-mRNA-1:exon:10324;Parent=Msa0160400-mRNA-1
chr1_4 exon 32697147 32697215 32697147 ID=Msa0160400-mRNA-1:exon:10323;Parent=Msa0160400-mRNA-1
chr1_4 exon 32697325 32697390 32697325 ID=Msa0160400-mRNA-1:exon:10322;Parent=Msa0160400-mRNA-1
chr1_4 exon 32697584 32697754 32697584 ID=Msa0160400-mRNA-1:exon:10321;Parent=Msa0160400-mRNA-1
chr1_4 exon 32697845 32698173 32697845 ID=Msa0160400-mRNA-1:exon:10320;Parent=Msa0160400-mRNA-1
chr1_4 exon 32698359 32698428 32698359 ID=Msa0160400-mRNA-1:exon:10319;Parent=Msa0160400-mRNA-1
chr1_4 exon 32699066 32699175 32699066 ID=Msa0160400-mRNA-1:exon:10318;Parent=Msa0160400-mRNA-1
chr1_4 exon 32699283 32700077 32699283 ID=Msa0160400-mRNA-1:exon:10317;Parent=Msa0160400-mRNA-1
chr1_4 five_prime_UTR 32699713 32700077 32699713 ID=Msa0160400-mRNA-1:five_prime_utr;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32699283 32699712 32699283 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32699066 32699175 32699066 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32698359 32698428 32698359 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32697845 32698173 32697845 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32697584 32697754 32697584 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32697325 32697390 32697325 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32697147 32697215 32697147 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 CDS 32696459 32696530 32696459 ID=Msa0160400-mRNA-1:cds;Parent=Msa0160400-mRNA-1
chr1_4 three_prime_UTR 32696191 32696458 32696191 ID=Msa0160400-mRNA-1:three_prime_utr;Parent=Msa0160400-mRNA-1
Gene Sequence

>Msa0160400

ATGGATTCTAATACTCATCAACAACACAACCAATCCAATTCTTCTGGGTTGCTTCGTTTTCGTTCTGCACCTAGTTCACTGTTTCAAAATCTCACACCTTCTTTTCCTTCTTCTGGTGATTCTAATAAAGTTACTAAACATTTTTGGGATGGTTCTGAATCAGAGAGATTTGTGAGTAACGATAATAATAATATTTCTGGTTCATCTTGTTCTAAGGAAATGAATTCTGGTTATGCTGCTGGTTTACCACCTCATTATCCTAGACATGGTTCTGGTTCTACTTCAAGTTCTGCTATGGATGGTTCTTTTGGATTGGTTGGTTCATTGGGAATGGATCAAGAAACATCACATGATAAGAGTTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGAGGCATGCGCACTGGCCAAGCGTTGTTCCCCCTGGGAATCGAACCCGGTATTGCCCGGGAACGTCCTTGGAAGGAGCTCCTTGCCGCAGGAGCCCAAGCAACTTGGTTTGGATGAACCAATTCGCAAAAGTACTGGGATTTGGTATGCGAGTACAAGTTCGCGGTTCTCTGGTGAATGCGGGTTTTCTACCATTAAAGGCGTTGGAAACTATGCCACGGTAAATGGTAGTAACGGCGAACTTAGTCCGTCTATTAACCGATTGAACACTCAGGTTACCTTCCCTTCAAGAAATGCTTCTTCCTTGGGAATATTGTCACATATCTCTGAAATAGATAGCGAGGATATTGAAGCAACTAGCCCTGATGACGGAGGTAGCAACGGTGATTCTACTCACTATGGCTCTGGATTCCCCTATAGTTCTTGGAACGATACTCAATCGTTCACAGAAAATCTCAGTGGTTTGAAAAGAGGGCGAAGCAGTAATGAAAAAATGTTTTCTGATATGCAGCGTGGAGGGCTTGGAAATCAAGTTCATACATTATCGCATCAGTTGAGTTTACCAAACACTTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATTCGAGCGAAACGAGGTTGCGCTACTCATCCTCGAAGCATTGCCGAGAGGGTAAGAAGAACTAAGATCAGTGAAAGAATGAGAAAATTGCAAGAGCTTGTTCCAAACATGGATAAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAAATCTTCAAAAACAATTCAAGTCCCTAAGTGATAAACGAGCAAACTGCAAATGTATGAGGATGCAGAAGGCAGATACAAATCAAATTACTTGA
Protein sequence

>Msa0160400

MDSNTHQQHNQSNSSGLLRFRSAPSSLFQNLTPSFPSSGDSNKVTKHFWDGSESERFVSNDNNNISGSSCSKEMNSGYAAGLPPHYPRHGSGSTSSSAMDGSFGLVGSLGMDQETSHDKSFGSNLLRQGSSPAGLFSNISFQNEACALAKRCSPWESNPVLPGNVLGRSSLPQEPKQLGLDEPIRKSTGIWYASTSSRFSGECGFSTIKGVGNYATVNGSNGELSPSINRLNTQVTFPSRNASSLGILSHISEIDSEDIEATSPDDGGSNGDSTHYGSGFPYSSWNDTQSFTENLSGLKRGRSSNEKMFSDMQRGGLGNQVHTLSHQLSLPNTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRMQKADTNQIT*