Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161260 | sp|Q9FG23|CK5P3_ARATH | 64.374 | 567 | 181 | 6 | 1 | 564 | 1 | 549 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161260 | A0A072VJQ0 | 97.340 | 564 | 15 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070250 | Msa0161260 | 0.886810 | 2.473620e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161260 | MtrunA17_Chr1g0174831 | 97.340 | 564 | 15 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161260 | AT5G06830.1 | 64.374 | 567 | 181 | 6 | 1 | 564 | 1 | 549 | 0.0 | 715 |
Find 128 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCTTCGTTTGATATTAT+TGG | 0.104672 | 1_4:-36114124 | None:intergenic |
| AACATATTTGGTCGTCTTTC+CGG | 0.164681 | 1_4:+36113002 | Msa0161260:CDS |
| GGAAGGCCAGTTAATATAAT+TGG | 0.182964 | 1_4:+36116378 | Msa0161260:CDS |
| CAACTCAATTCAACAACTTC+TGG | 0.187109 | 1_4:-36111403 | None:intergenic |
| AAAATACTGAATAAATTTAT+AGG | 0.210348 | 1_4:+36116510 | Msa0161260:three_prime_UTR |
| TTCTTCTCTGCTCAGTTAAA+TGG | 0.212683 | 1_4:-36111374 | None:intergenic |
| CAGGGTCTAGGGTTTGAAAA+AGG | 0.219060 | 1_4:-36111782 | None:intergenic |
| GATGCAAAGTGATATTTCTT+TGG | 0.257767 | 1_4:+36114708 | Msa0161260:CDS |
| ATCTCCCCAATTATATTAAC+TGG | 0.273734 | 1_4:-36116384 | None:intergenic |
| TAATGTCAGATTAGAACTTT+TGG | 0.282447 | 1_4:+36113506 | Msa0161260:CDS |
| TTGATCTTGCAAGAAGATAT+TGG | 0.295724 | 1_4:+36116704 | Msa0161260:three_prime_UTR |
| ACTTCCACATTGCTTTCTTC+AGG | 0.303865 | 1_4:-36113929 | None:intergenic |
| GACTCTGAGGTTATTAATAT+TGG | 0.309283 | 1_4:+36113875 | Msa0161260:CDS |
| CAATTTCATTGCTGACAAAT+AGG | 0.323606 | 1_4:+36114731 | Msa0161260:CDS |
| CTGATAGTGATGAAGCCTTT+TGG | 0.328636 | 1_4:+36116469 | Msa0161260:three_prime_UTR |
| GCTCAGTTAAATGGTAATAT+TGG | 0.331455 | 1_4:-36111365 | None:intergenic |
| AAAGTAGAACTCACTTGTTT+TGG | 0.336298 | 1_4:-36115044 | None:intergenic |
| GATTATTTGGTTAGGGTGCT+TGG | 0.339462 | 1_4:+36113097 | Msa0161260:intron |
| TTCAGGGATTGGTTATTTAG+AGG | 0.347258 | 1_4:+36112932 | Msa0161260:intron |
| TGGAAAGTTCACAAATTGAT+TGG | 0.357253 | 1_4:+36113984 | Msa0161260:CDS |
| GAAGGCCAGTTAATATAATT+GGG | 0.364813 | 1_4:+36116379 | Msa0161260:CDS |
| AAAACAAACCTTCAGGGTCT+AGG | 0.387153 | 1_4:-36111794 | None:intergenic |
| AGACAGACTAGTAAACTCTT+TGG | 0.390215 | 1_4:+36114926 | Msa0161260:CDS |
| ATGTGAAAATAAGAACAAAA+AGG | 0.395006 | 1_4:-36116549 | None:intergenic |
| TAATATCAGAGCAAGAATAA+TGG | 0.397936 | 1_4:-36116729 | None:intergenic |
| GAGGCATTAATGATTTCATA+TGG | 0.400164 | 1_4:-36114055 | None:intergenic |
| TGCACCTGTTTCCTCTGATA+AGG | 0.401811 | 1_4:-36113300 | None:intergenic |
| ACACTTTCATCCATGTTTGA+TGG | 0.404738 | 1_4:+36116357 | Msa0161260:CDS |
| ATTATTTGGTTAGGGTGCTT+GGG | 0.406011 | 1_4:+36113098 | Msa0161260:intron |
| TCTGTCTAATTCAAAAGAAC+AGG | 0.407323 | 1_4:-36116574 | None:intergenic |
| TTGTCAGGAGCTTGGCCTAC+AGG | 0.414431 | 1_4:+36113413 | Msa0161260:CDS |
| TTGCTGCTCCTGACATTGAC+TGG | 0.415578 | 1_4:+36113951 | Msa0161260:CDS |
| ACGGAAAGTAGGAACATATT+TGG | 0.415933 | 1_4:+36112990 | Msa0161260:CDS |
| AAATACTGAATAAATTTATA+GGG | 0.417175 | 1_4:+36116511 | Msa0161260:three_prime_UTR |
| ATGAAGCTATTTGTGGTACT+TGG | 0.417992 | 1_4:+36116659 | Msa0161260:three_prime_UTR |
| TAAATATGTTGAAGCTTGTC+AGG | 0.419372 | 1_4:+36113398 | Msa0161260:CDS |
| AAGCACGTTTAGCAGGATCT+TGG | 0.431282 | 1_4:+36113548 | Msa0161260:CDS |
| TCACAAATTGATTGGGACAT+TGG | 0.431406 | 1_4:+36113992 | Msa0161260:CDS |
| ATATGGACCCAAGCCATTAC+CGG | 0.432848 | 1_4:-36114038 | None:intergenic |
| GTCAACTGAGATAAGGCATC+TGG | 0.433495 | 1_4:-36114256 | None:intergenic |
| GGAAAGTTCACAAATTGATT+GGG | 0.448608 | 1_4:+36113985 | Msa0161260:CDS |
| GTTATAAATGAAGCTATTTG+TGG | 0.453076 | 1_4:+36116652 | Msa0161260:three_prime_UTR |
| CACTTCCAAGCACGTTTAGC+AGG | 0.464192 | 1_4:+36113541 | Msa0161260:CDS |
| GAGGATACCGGTAATGGCTT+GGG | 0.464929 | 1_4:+36114031 | Msa0161260:CDS |
| ACTCTGTTGACCAGTGGTCT+TGG | 0.470858 | 1_4:+36116411 | Msa0161260:CDS |
| GGAGGATACCGGTAATGGCT+TGG | 0.474836 | 1_4:+36114030 | Msa0161260:CDS |
| GAAAGACGGGTTGAAGGACT+TGG | 0.474948 | 1_4:+36114977 | Msa0161260:CDS |
| TGAGTATCTCACCGCAGAAC+CGG | 0.475633 | 1_4:-36113021 | None:intergenic |
| AAACAAACCTTCAGGGTCTA+GGG | 0.476235 | 1_4:-36111793 | None:intergenic |
| TTGAAGAATGGTTGGTCGAT+CGG | 0.484184 | 1_4:+36111667 | Msa0161260:intron |
| GAAATATCCCAGTCAATGTC+AGG | 0.486100 | 1_4:-36113959 | None:intergenic |
| AAGTCCTTATCAGAGGAAAC+AGG | 0.490424 | 1_4:+36113296 | Msa0161260:intron |
| GCTCACATGCAGATATATGC+TGG | 0.490986 | 1_4:+36114149 | Msa0161260:CDS |
| AAGATCCTGCTAAACGTGCT+TGG | 0.492514 | 1_4:-36113546 | None:intergenic |
| TTATGATTCTCAACTCCAAA+AGG | 0.493920 | 1_4:+36114770 | Msa0161260:CDS |
| CAGAGATGCTCACACTGAAA+AGG | 0.498117 | 1_4:+36113626 | Msa0161260:CDS |
| GCAGAAGATTCAACAGCAGC+TGG | 0.500986 | 1_4:+36113320 | Msa0161260:CDS |
| GTTGAAGCTTGTCAGGAGCT+TGG | 0.502250 | 1_4:+36113405 | Msa0161260:CDS |
| TGTACTCTGTGTCTAAAAGC+TGG | 0.509361 | 1_4:-36114300 | None:intergenic |
| AAAAGGGGATCAGAATCCTT+AGG | 0.511257 | 1_4:-36111765 | None:intergenic |
| CAGACTAGTAAACTCTTTGG+AGG | 0.513990 | 1_4:+36114929 | Msa0161260:CDS |
| TGTTATCTTTGAAGAATGGT+TGG | 0.516651 | 1_4:+36111659 | Msa0161260:intron |
| TTAAATCATTCTTAAATCAA+CGG | 0.523895 | 1_4:+36114584 | Msa0161260:CDS |
| TGTAGTCATTATCCACCAAA+AGG | 0.525809 | 1_4:-36116484 | None:intergenic |
| CAGTGTTCATTCAAGTAACA+AGG | 0.526568 | 1_4:+36113898 | Msa0161260:CDS |
| GGAAAAGAGTACCTTCTGAT+TGG | 0.530458 | 1_4:+36111688 | Msa0161260:CDS |
| GTATACTGCTGTAGTACAAA+GGG | 0.532926 | 1_4:-36114667 | None:intergenic |
| TCTTCTTGCAAGATCAATGA+AGG | 0.533636 | 1_4:-36116698 | None:intergenic |
| CAAGTTGAAAGACGGGTTGA+AGG | 0.533639 | 1_4:+36114971 | Msa0161260:CDS |
| ATTGTATAGTCTTGAGCCAA+AGG | 0.535332 | 1_4:-36116611 | None:intergenic |
| CATTGGAACTGTAGAAGAAA+CGG | 0.538597 | 1_4:+36114009 | Msa0161260:CDS |
| GATTCTCGACGATCTATATG+AGG | 0.538961 | 1_4:+36114330 | Msa0161260:CDS |
| GAATGCATCAAATGCAGTGC+TGG | 0.542634 | 1_4:+36114216 | Msa0161260:CDS |
| GAAACGGAGGATACCGGTAA+TGG | 0.543586 | 1_4:+36114025 | Msa0161260:CDS |
| TGAAGTCTACTACGGAAAGT+AGG | 0.544788 | 1_4:+36112979 | Msa0161260:CDS |
| ATGAAGTCAAGTTGAAAGAC+GGG | 0.545553 | 1_4:+36114964 | Msa0161260:CDS |
| TTTCATCCATGTTTGATGGA+AGG | 0.547085 | 1_4:+36116361 | Msa0161260:CDS |
| TCAACAGCAACATTTAAAGA+TGG | 0.547432 | 1_4:-36113854 | None:intergenic |
| ATAATGATTGCAGAGATCTT+CGG | 0.548460 | 1_4:+36113790 | Msa0161260:intron |
| AGTTGATGAAGAAGTCTGAA+TGG | 0.553738 | 1_4:-36114083 | None:intergenic |
| TGCTGACAAATAGGAAGACA+AGG | 0.555502 | 1_4:+36114740 | Msa0161260:CDS |
| GGAAGGTTGCGAATATCGTC+GGG | 0.555634 | 1_4:-36111526 | None:intergenic |
| GTCGCTACAAAATCAAGTAC+AGG | 0.556442 | 1_4:+36114636 | Msa0161260:CDS |
| TGGAAGGTTGCGAATATCGT+CGG | 0.557579 | 1_4:-36111527 | None:intergenic |
| TGACAGAAAACAAGGAAGGA+AGG | 0.563342 | 1_4:+36114275 | Msa0161260:CDS |
| AGAATTCGTTATCTTCATTG+TGG | 0.565216 | 1_4:+36115021 | Msa0161260:CDS |
| CAGTTAAATGGTAATATTGG+AGG | 0.567772 | 1_4:-36111362 | None:intergenic |
| CTCACATGCAGATATATGCT+GGG | 0.570752 | 1_4:+36114150 | Msa0161260:CDS |
| AAACAGTGACAACATTTCAC+AGG | 0.572703 | 1_4:+36113578 | Msa0161260:CDS |
| TGGTCGTCTTTCCGGTTCTG+CGG | 0.575108 | 1_4:+36113010 | Msa0161260:CDS |
| CATTCTCTTGAAGTCTACTA+CGG | 0.579658 | 1_4:+36112971 | Msa0161260:CDS |
| CTGAGATAAGGCATCTGGAA+GGG | 0.579886 | 1_4:-36114251 | None:intergenic |
| GTAGAAGAAACGGAGGATAC+CGG | 0.580555 | 1_4:+36114019 | Msa0161260:CDS |
| AAATGTTGCTGTTGACTCTG+AGG | 0.584835 | 1_4:+36113862 | Msa0161260:CDS |
| CATTGACTGGGATATTTCAG+TGG | 0.585460 | 1_4:+36113964 | Msa0161260:CDS |
| GCTGGCAGAACTTGATCGCA+AGG | 0.586969 | 1_4:+36113338 | Msa0161260:CDS |
| GGGGATCAGAATCCTTAGGA+AGG | 0.587029 | 1_4:-36111761 | None:intergenic |
| GGTATACTGCTGTAGTACAA+AGG | 0.588757 | 1_4:-36114668 | None:intergenic |
| TATTATGAAGTCCTTATCAG+AGG | 0.592122 | 1_4:+36113289 | Msa0161260:intron |
| TCATCATGCTCCAAGACCAC+TGG | 0.593689 | 1_4:-36116421 | None:intergenic |
| ATCTCAGTTGACAGAAAACA+AGG | 0.594233 | 1_4:+36114267 | Msa0161260:CDS |
| CATGAAGTCAAGTTGAAAGA+CGG | 0.596676 | 1_4:+36114963 | Msa0161260:CDS |
| AAAGGCTTCATCACTATCAG+AGG | 0.602142 | 1_4:-36116466 | None:intergenic |
| TTTCAAACCCTAGACCCTGA+AGG | 0.603613 | 1_4:+36111786 | Msa0161260:CDS |
| ACAGCAACATTTAAAGATGG+AGG | 0.608554 | 1_4:-36113851 | None:intergenic |
| GGACTTGGCTACTAAGCGCA+TGG | 0.609522 | 1_4:+36114992 | Msa0161260:CDS |
| TCTTCATCAACTGAGGATGT+CGG | 0.609968 | 1_4:+36114094 | Msa0161260:CDS |
| AAGCTGTACTGCAAAACTTG+AGG | 0.612074 | 1_4:+36113813 | Msa0161260:CDS |
| TCAGACTTCTTCATCAACTG+AGG | 0.616971 | 1_4:+36114087 | Msa0161260:CDS |
| AACTGGCCTTCCATCAAACA+TGG | 0.622596 | 1_4:-36116367 | None:intergenic |
| TGCTGCTCCTGACATTGACT+GGG | 0.628895 | 1_4:+36113952 | Msa0161260:CDS |
| CATCGTTTCTATAGTATCCG+CGG | 0.636876 | 1_4:-36114689 | None:intergenic |
| ACTGAGATAAGGCATCTGGA+AGG | 0.636948 | 1_4:-36114252 | None:intergenic |
| AATTAAAGCTCAAATTGCAA+AGG | 0.639084 | 1_4:+36111728 | Msa0161260:CDS |
| CAGTTGACAGAAAACAAGGA+AGG | 0.644254 | 1_4:+36114271 | Msa0161260:CDS |
| GGGATCAGAATCCTTAGGAA+GGG | 0.647166 | 1_4:-36111760 | None:intergenic |
| AGAAGTCTGAATGGCCTCAG+AGG | 0.648406 | 1_4:-36114074 | None:intergenic |
| ATCAACACTCTGTTGACCAG+TGG | 0.655638 | 1_4:+36116405 | Msa0161260:CDS |
| TGAAATCATTAATGCCTCTG+AGG | 0.656287 | 1_4:+36114060 | Msa0161260:CDS |
| AAGGCCAGTTAATATAATTG+GGG | 0.665384 | 1_4:+36116380 | Msa0161260:CDS |
| GCTGACAAATAGGAAGACAA+GGG | 0.689145 | 1_4:+36114741 | Msa0161260:CDS |
| TAGCTTCATTTATAACACGT+CGG | 0.695572 | 1_4:-36116645 | None:intergenic |
| AAATCCTGAAGAAAGCAATG+TGG | 0.698771 | 1_4:+36113925 | Msa0161260:CDS |
| TAATAAGTGCAGCCTCACCA+AGG | 0.702211 | 1_4:-36113158 | None:intergenic |
| TGGAACTGTAGAAGAAACGG+AGG | 0.715106 | 1_4:+36114012 | Msa0161260:CDS |
| GCTACAAAATCAAGTACAGG+CGG | 0.724221 | 1_4:+36114639 | Msa0161260:CDS |
| GTTAGCTGAATTGAAGAACG+AGG | 0.745851 | 1_4:+36114606 | Msa0161260:CDS |
| TGTACTACAGCAGTATACCG+CGG | 0.765043 | 1_4:+36114672 | Msa0161260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTAATTTTCTTAAAAAA+TGG | + | chr1_4:36115813-36115832 | Msa0161260:intron | 10.0% |
| !! | AAAATACTGAATAAATTTAT+AGG | + | chr1_4:36116510-36116529 | Msa0161260:three_prime_UTR | 10.0% |
| !! | AAATACTGAATAAATTTATA+GGG | + | chr1_4:36116511-36116530 | Msa0161260:three_prime_UTR | 10.0% |
| !! | ATTGAAATTGAAATTGAAAA+GGG | - | chr1_4:36111602-36111621 | None:intergenic | 15.0% |
| !! | AATTGAAATTGAAATTGAAA+AGG | - | chr1_4:36111603-36111622 | None:intergenic | 15.0% |
| !!! | AATTTCAATTTCTTCAATTT+TGG | + | chr1_4:36111619-36111638 | Msa0161260:intron | 15.0% |
| !!! | AATAGACATTTTTTTATAAC+AGG | - | chr1_4:36111846-36111865 | None:intergenic | 15.0% |
| !! | GTTATAAAAAAATGTCTATT+TGG | + | chr1_4:36111846-36111865 | Msa0161260:intron | 15.0% |
| !! | TTGATACACAATAATTAATT+TGG | + | chr1_4:36111961-36111980 | Msa0161260:intron | 15.0% |
| !! | TTGATTATGTAAAATTGATT+AGG | + | chr1_4:36112027-36112046 | Msa0161260:intron | 15.0% |
| !!! | GAATTAATTTTTAACATGTA+TGG | - | chr1_4:36112655-36112674 | None:intergenic | 15.0% |
| !! | TATTTAATTATGTGTATGTT+TGG | - | chr1_4:36112718-36112737 | None:intergenic | 15.0% |
| !!! | TATTGATTGTAAGAAATTTT+TGG | + | chr1_4:36112855-36112874 | Msa0161260:intron | 15.0% |
| !! | CATGTTTGAATAAATTAATT+AGG | + | chr1_4:36113761-36113780 | Msa0161260:intron | 15.0% |
| !! | TTGAATAAATTAATTAGGAT+TGG | + | chr1_4:36113766-36113785 | Msa0161260:intron | 15.0% |
| !!! | ACAAAAATTAAGATTTTGTA+TGG | - | chr1_4:36114542-36114561 | None:intergenic | 15.0% |
| !!! | ACAAAATCTTAATTTTTGTT+TGG | + | chr1_4:36114543-36114562 | Msa0161260:intron | 15.0% |
| !! | TTAAATCATTCTTAAATCAA+CGG | + | chr1_4:36114584-36114603 | Msa0161260:CDS | 15.0% |
| !! | TTATATATATTCTGTGTTAA+TGG | + | chr1_4:36114872-36114891 | Msa0161260:intron | 15.0% |
| !! | TTTAAAAATAATGAACTTAG+TGG | - | chr1_4:36115443-36115462 | None:intergenic | 15.0% |
| !! | TTGTTGAAAAAATTATGATA+TGG | + | chr1_4:36115971-36115990 | Msa0161260:intron | 15.0% |
| !! | AAAATTGAAAATAAATCACA+TGG | - | chr1_4:36116015-36116034 | None:intergenic | 15.0% |
| !! | ATAAGAGAAATATAGATAAA+GGG | - | chr1_4:36116135-36116154 | None:intergenic | 15.0% |
| !! | AATAAGAGAAATATAGATAA+AGG | - | chr1_4:36116136-36116155 | None:intergenic | 15.0% |
| !!! | ATTTTGTTATCTTTGAAGAA+TGG | + | chr1_4:36111655-36111674 | Msa0161260:intron | 20.0% |
| !!! | TAATTAATTTGGTGTATGTT+TGG | + | chr1_4:36111972-36111991 | Msa0161260:intron | 20.0% |
| !! | AATTTATTCTACTTAAAGCT+AGG | - | chr1_4:36112165-36112184 | None:intergenic | 20.0% |
| !!! | AATTTTGGCTCATTTTAAAA+TGG | + | chr1_4:36112254-36112273 | Msa0161260:intron | 20.0% |
| !!! | CTTTTTAGCATAATTGTTTT+TGG | - | chr1_4:36112629-36112648 | None:intergenic | 20.0% |
| !!! | TACACATCTAAAATTGATTT+TGG | + | chr1_4:36112675-36112694 | Msa0161260:intron | 20.0% |
| !! | GTGAGAAACTAAAATAAAAA+TGG | - | chr1_4:36113254-36113273 | None:intergenic | 20.0% |
| !! | TTTGATTATATTATTCTGCA+GGG | + | chr1_4:36113480-36113499 | Msa0161260:intron | 20.0% |
| !! | AATTCTTCGTTTGATATTAT+TGG | - | chr1_4:36114127-36114146 | None:intergenic | 20.0% |
| !! | AAAAAAAAACAAAGAATGGA+AGG | - | chr1_4:36115153-36115172 | None:intergenic | 20.0% |
| !! | GGAAAAAAAAAAACAAAGAA+TGG | - | chr1_4:36115157-36115176 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGAACTAGTA+AGG | + | chr1_4:36115372-36115391 | Msa0161260:intron | 20.0% |
| !! | TAAGAGAAATATAGATAAAG+GGG | - | chr1_4:36116134-36116153 | None:intergenic | 20.0% |
| !! | AAAAATAAAAACCAGTGAAA+GGG | - | chr1_4:36116253-36116272 | None:intergenic | 20.0% |
| !! | TAAAAATAAAAACCAGTGAA+AGG | - | chr1_4:36116254-36116273 | None:intergenic | 20.0% |
| !! | ATGTGAAAATAAGAACAAAA+AGG | - | chr1_4:36116552-36116571 | None:intergenic | 20.0% |
| ! | ATTGAAATTGAAAAGGGAAA+TGG | - | chr1_4:36111596-36111615 | None:intergenic | 25.0% |
| ! | AATTAAAGCTCAAATTGCAA+AGG | + | chr1_4:36111728-36111747 | Msa0161260:CDS | 25.0% |
| ! | CATAAAAAAACAAACCTTCA+GGG | - | chr1_4:36111803-36111822 | None:intergenic | 25.0% |
| ! | ACATAAAAAAACAAACCTTC+AGG | - | chr1_4:36111804-36111823 | None:intergenic | 25.0% |
| ! | TGAGTTAAACTTGAAATTTG+TGG | + | chr1_4:36112105-36112124 | Msa0161260:intron | 25.0% |
| ! | GAGTTAAACTTGAAATTTGT+GGG | + | chr1_4:36112106-36112125 | Msa0161260:intron | 25.0% |
| !! | GCTTTAAGTAGAATAAATTC+TGG | + | chr1_4:36112166-36112185 | Msa0161260:intron | 25.0% |
| ! | TTAAGTAGAATAAATTCTGG+AGG | + | chr1_4:36112169-36112188 | Msa0161260:intron | 25.0% |
| !! | ATGATTAAAAGTGAGTTGAA+TGG | + | chr1_4:36112481-36112500 | Msa0161260:intron | 25.0% |
| !!! | TGATTGTAAGAAATTTTTGG+TGG | + | chr1_4:36112858-36112877 | Msa0161260:intron | 25.0% |
| !!! | GATTGTAAGAAATTTTTGGT+GGG | + | chr1_4:36112859-36112878 | Msa0161260:intron | 25.0% |
| !!! | CATTGCTTTATCTTTTTTCA+GGG | + | chr1_4:36112916-36112935 | Msa0161260:intron | 25.0% |
| !!! | ATACTTTTTCTTAGTGATTC+TGG | + | chr1_4:36113043-36113062 | Msa0161260:intron | 25.0% |
| !!! | AATTGTGAAATCTTTTGAGA+AGG | + | chr1_4:36113125-36113144 | Msa0161260:CDS | 25.0% |
| !!! | GGTGTTTATTTTCTGTTAAA+TGG | + | chr1_4:36113449-36113468 | Msa0161260:intron | 25.0% |
| ! | GTTTGATTATATTATTCTGC+AGG | + | chr1_4:36113479-36113498 | Msa0161260:intron | 25.0% |
| !! | TAATGTCAGATTAGAACTTT+TGG | + | chr1_4:36113506-36113525 | Msa0161260:CDS | 25.0% |
| ! | TCTTGAATTATCTGTATAGA+AGG | + | chr1_4:36113722-36113741 | Msa0161260:intron | 25.0% |
| ! | AATTATCTGTATAGAAGGAT+GGG | + | chr1_4:36113727-36113746 | Msa0161260:intron | 25.0% |
| !! | AAATATCCAGTAATACCTTT+TGG | - | chr1_4:36114788-36114807 | None:intergenic | 25.0% |
| !!! | ATCTAGTAATAGTTTTAGAG+AGG | - | chr1_4:36115212-36115231 | None:intergenic | 25.0% |
| !!! | GTTCAAACTAATTTTGAGAT+TGG | - | chr1_4:36115367-36115386 | None:intergenic | 25.0% |
| ! | AAGAGAAATATAGATAAAGG+GGG | - | chr1_4:36116133-36116152 | None:intergenic | 25.0% |
| ! | GTTATAAATGAAGCTATTTG+TGG | + | chr1_4:36116652-36116671 | Msa0161260:three_prime_UTR | 25.0% |
| CAGTTAAATGGTAATATTGG+AGG | - | chr1_4:36111365-36111384 | None:intergenic | 30.0% | |
| GCTCAGTTAAATGGTAATAT+TGG | - | chr1_4:36111368-36111387 | None:intergenic | 30.0% | |
| ! | GATGTTTTGCAACAGTTTTA+AGG | - | chr1_4:36111479-36111498 | None:intergenic | 30.0% |
| AAAAAGTGATGTCAATTGGA+AGG | - | chr1_4:36111546-36111565 | None:intergenic | 30.0% | |
| ! | TGTTATCTTTGAAGAATGGT+TGG | + | chr1_4:36111659-36111678 | Msa0161260:intron | 30.0% |
| !! | TATTTGGATTAGTGTGTGTT+TGG | + | chr1_4:36111862-36111881 | Msa0161260:intron | 30.0% |
| !!! | ATTTGGTGTATGTTTGGTTT+TGG | + | chr1_4:36111978-36111997 | Msa0161260:intron | 30.0% |
| !!! | TTTGGTGTATGTTTGGTTTT+GGG | + | chr1_4:36111979-36111998 | Msa0161260:intron | 30.0% |
| TAGGACTAAAAGTTAGTTGA+AGG | + | chr1_4:36112046-36112065 | Msa0161260:intron | 30.0% | |
| AGGACTAAAAGTTAGTTGAA+GGG | + | chr1_4:36112047-36112066 | Msa0161260:intron | 30.0% | |
| AGAACTCATTCAAACATGTT+TGG | - | chr1_4:36112220-36112239 | None:intergenic | 30.0% | |
| AAATGAGCCAAAATTCATTC+TGG | - | chr1_4:36112249-36112268 | None:intergenic | 30.0% | |
| ! | AACTTGAAGCTATGATTTGT+AGG | - | chr1_4:36112590-36112609 | None:intergenic | 30.0% |
| !! | TGTATGTTTGGTTTCACTTT+TGG | - | chr1_4:36112706-36112725 | None:intergenic | 30.0% |
| !!! | GCATTGCTTTATCTTTTTTC+AGG | + | chr1_4:36112915-36112934 | Msa0161260:intron | 30.0% |
| !!! | CTTTATCTTTTTTCAGGGAT+TGG | + | chr1_4:36112921-36112940 | Msa0161260:intron | 30.0% |
| AATAATCTTCACGATGACAA+CGG | - | chr1_4:36113084-36113103 | None:intergenic | 30.0% | |
| TTGTCATCGTGAAGATTATT+TGG | + | chr1_4:36113084-36113103 | Msa0161260:intron | 30.0% | |
| ATCGTGAAGATTATTTGGTT+AGG | + | chr1_4:36113089-36113108 | Msa0161260:intron | 30.0% | |
| TCGTGAAGATTATTTGGTTA+GGG | + | chr1_4:36113090-36113109 | Msa0161260:intron | 30.0% | |
| TATTATGAAGTCCTTATCAG+AGG | + | chr1_4:36113289-36113308 | Msa0161260:intron | 30.0% | |
| TAAATATGTTGAAGCTTGTC+AGG | + | chr1_4:36113398-36113417 | Msa0161260:CDS | 30.0% | |
| GAATTATCTGTATAGAAGGA+TGG | + | chr1_4:36113726-36113745 | Msa0161260:intron | 30.0% | |
| ATAATGATTGCAGAGATCTT+CGG | + | chr1_4:36113790-36113809 | Msa0161260:intron | 30.0% | |
| TCAACAGCAACATTTAAAGA+TGG | - | chr1_4:36113857-36113876 | None:intergenic | 30.0% | |
| !! | GACTCTGAGGTTATTAATAT+TGG | + | chr1_4:36113875-36113894 | Msa0161260:CDS | 30.0% |
| TGGAAAGTTCACAAATTGAT+TGG | + | chr1_4:36113984-36114003 | Msa0161260:CDS | 30.0% | |
| GGAAAGTTCACAAATTGATT+GGG | + | chr1_4:36113985-36114004 | Msa0161260:CDS | 30.0% | |
| ! | GAGGCATTAATGATTTCATA+TGG | - | chr1_4:36114058-36114077 | None:intergenic | 30.0% |
| CATATAATTTCCTATACCCT+TGG | + | chr1_4:36114403-36114422 | Msa0161260:intron | 30.0% | |
| CTTACTCATATGTTTATCGA+GGG | - | chr1_4:36114502-36114521 | None:intergenic | 30.0% | |
| TCTTACTCATATGTTTATCG+AGG | - | chr1_4:36114503-36114522 | None:intergenic | 30.0% | |
| GATGCAAAGTGATATTTCTT+TGG | + | chr1_4:36114708-36114727 | Msa0161260:CDS | 30.0% | |
| CAATTTCATTGCTGACAAAT+AGG | + | chr1_4:36114731-36114750 | Msa0161260:CDS | 30.0% | |
| TTATGATTCTCAACTCCAAA+AGG | + | chr1_4:36114770-36114789 | Msa0161260:CDS | 30.0% | |
| TATATAAAATCTGACAGAGC+TGG | - | chr1_4:36114859-36114878 | None:intergenic | 30.0% | |
| ! | CTGTCTAGAAATCTGAAATT+TGG | - | chr1_4:36114912-36114931 | None:intergenic | 30.0% |
| AGAATTCGTTATCTTCATTG+TGG | + | chr1_4:36115021-36115040 | Msa0161260:CDS | 30.0% | |
| ! | AAAGTAGAACTCACTTGTTT+TGG | - | chr1_4:36115047-36115066 | None:intergenic | 30.0% |
| !!! | AATAGTTTTAGAGAGGTGTA+GGG | - | chr1_4:36115205-36115224 | None:intergenic | 30.0% |
| !!! | TAATAGTTTTAGAGAGGTGT+AGG | - | chr1_4:36115206-36115225 | None:intergenic | 30.0% |
| GTATGGTTTATAAAACTCGA+AGG | - | chr1_4:36115277-36115296 | None:intergenic | 30.0% | |
| !!! | AACTAATTTTGAGATTGGCT+GGG | - | chr1_4:36115362-36115381 | None:intergenic | 30.0% |
| !!! | AAACTAATTTTGAGATTGGC+TGG | - | chr1_4:36115363-36115382 | None:intergenic | 30.0% |
| ! | CAATGTTTGAAACACCAAAT+TGG | - | chr1_4:36115738-36115757 | None:intergenic | 30.0% |
| ACAGAGATATAGCAATAACA+GGG | + | chr1_4:36115877-36115896 | Msa0161260:intron | 30.0% | |
| ! | TTAAAAGATTAGTTGCCAAC+CGG | - | chr1_4:36116211-36116230 | None:intergenic | 30.0% |
| GAAGGCCAGTTAATATAATT+GGG | + | chr1_4:36116379-36116398 | Msa0161260:CDS | 30.0% | |
| AAGGCCAGTTAATATAATTG+GGG | + | chr1_4:36116380-36116399 | Msa0161260:CDS | 30.0% | |
| ATCTCCCCAATTATATTAAC+TGG | - | chr1_4:36116387-36116406 | None:intergenic | 30.0% | |
| TCTGTCTAATTCAAAAGAAC+AGG | - | chr1_4:36116577-36116596 | None:intergenic | 30.0% | |
| !!! | GAACTTGTACTTTTTTCCTT+TGG | + | chr1_4:36116595-36116614 | Msa0161260:three_prime_UTR | 30.0% |
| TAGCTTCATTTATAACACGT+CGG | - | chr1_4:36116648-36116667 | None:intergenic | 30.0% | |
| TTGATCTTGCAAGAAGATAT+TGG | + | chr1_4:36116704-36116723 | Msa0161260:three_prime_UTR | 30.0% | |
| TTCTTCTCTGCTCAGTTAAA+TGG | - | chr1_4:36111377-36111396 | None:intergenic | 35.0% | |
| CAACTCAATTCAACAACTTC+TGG | - | chr1_4:36111406-36111425 | None:intergenic | 35.0% | |
| CGAGAAAAAGTGATGTCAAT+TGG | - | chr1_4:36111550-36111569 | None:intergenic | 35.0% | |
| !!! | TTGGTGTATGTTTGGTTTTG+GGG | + | chr1_4:36111980-36111999 | Msa0161260:intron | 35.0% |
| ! | AAGGGAAAGTGATTTGTGTT+TGG | + | chr1_4:36112065-36112084 | Msa0161260:intron | 35.0% |
| ! | TACACGTCCAGAATGAATTT+TGG | + | chr1_4:36112239-36112258 | Msa0161260:intron | 35.0% |
| ! | AAAGTGAGTTGAATGGAAAG+TGG | + | chr1_4:36112488-36112507 | Msa0161260:intron | 35.0% |
| ! | AAGTGAGTTGAATGGAAAGT+GGG | + | chr1_4:36112489-36112508 | Msa0161260:intron | 35.0% |
| AATGGAAAGTGGGATATGTT+TGG | + | chr1_4:36112499-36112518 | Msa0161260:intron | 35.0% | |
| GAAAACAACTCAACACTCAA+CGG | - | chr1_4:36112816-36112835 | None:intergenic | 35.0% | |
| ! | TCAACTTGCTTGCATAAGAT+GGG | + | chr1_4:36112882-36112901 | Msa0161260:intron | 35.0% |
| GCATAAGATGGGATTAAATG+TGG | + | chr1_4:36112893-36112912 | Msa0161260:intron | 35.0% | |
| !! | TTCAGGGATTGGTTATTTAG+AGG | + | chr1_4:36112932-36112951 | Msa0161260:intron | 35.0% |
| CATTCTCTTGAAGTCTACTA+CGG | + | chr1_4:36112971-36112990 | Msa0161260:CDS | 35.0% | |
| ACGGAAAGTAGGAACATATT+TGG | + | chr1_4:36112990-36113009 | Msa0161260:CDS | 35.0% | |
| AACATATTTGGTCGTCTTTC+CGG | + | chr1_4:36113002-36113021 | Msa0161260:CDS | 35.0% | |
| ! | ATTATTTGGTTAGGGTGCTT+GGG | + | chr1_4:36113098-36113117 | Msa0161260:intron | 35.0% |
| TGTAAGCAATGTGATCTTCT+TGG | + | chr1_4:36113205-36113224 | Msa0161260:intron | 35.0% | |
| AAACAGTGACAACATTTCAC+AGG | + | chr1_4:36113578-36113597 | Msa0161260:CDS | 35.0% | |
| AGATAATTCAAGAGAGTTGC+AGG | - | chr1_4:36113715-36113734 | None:intergenic | 35.0% | |
| ACAGCAACATTTAAAGATGG+AGG | - | chr1_4:36113854-36113873 | None:intergenic | 35.0% | |
| CAGTGTTCATTCAAGTAACA+AGG | + | chr1_4:36113898-36113917 | Msa0161260:CDS | 35.0% | |
| AAATCCTGAAGAAAGCAATG+TGG | + | chr1_4:36113925-36113944 | Msa0161260:CDS | 35.0% | |
| TCACAAATTGATTGGGACAT+TGG | + | chr1_4:36113992-36114011 | Msa0161260:CDS | 35.0% | |
| CATTGGAACTGTAGAAGAAA+CGG | + | chr1_4:36114009-36114028 | Msa0161260:CDS | 35.0% | |
| TGAAATCATTAATGCCTCTG+AGG | + | chr1_4:36114060-36114079 | Msa0161260:CDS | 35.0% | |
| !! | AGTTGATGAAGAAGTCTGAA+TGG | - | chr1_4:36114086-36114105 | None:intergenic | 35.0% |
| ! | GTTTTCTGTCAACTGAGATA+AGG | - | chr1_4:36114266-36114285 | None:intergenic | 35.0% |
| ATCTCAGTTGACAGAAAACA+AGG | + | chr1_4:36114267-36114286 | Msa0161260:CDS | 35.0% | |
| TTGTATGGACAAAGAAGAGT+GGG | - | chr1_4:36114527-36114546 | None:intergenic | 35.0% | |
| TTTGTATGGACAAAGAAGAG+TGG | - | chr1_4:36114528-36114547 | None:intergenic | 35.0% | |
| GTATACTGCTGTAGTACAAA+GGG | - | chr1_4:36114670-36114689 | None:intergenic | 35.0% | |
| !! | TCAACTCCAAAAGGTATTAC+TGG | + | chr1_4:36114779-36114798 | Msa0161260:intron | 35.0% |
| AGACAGACTAGTAAACTCTT+TGG | + | chr1_4:36114926-36114945 | Msa0161260:CDS | 35.0% | |
| !! | CATGAAGTCAAGTTGAAAGA+CGG | + | chr1_4:36114963-36114982 | Msa0161260:CDS | 35.0% |
| !! | ATGAAGTCAAGTTGAAAGAC+GGG | + | chr1_4:36114964-36114983 | Msa0161260:CDS | 35.0% |
| ! | AATGTCACTTCTTCTGAAGA+AGG | - | chr1_4:36115178-36115197 | None:intergenic | 35.0% |
| ! | TCATTTTCCACGATAAAGTG+TGG | - | chr1_4:36115236-36115255 | None:intergenic | 35.0% |
| AGTTTGAACTAGTAAGGAAC+TGG | + | chr1_4:36115378-36115397 | Msa0161260:intron | 35.0% | |
| TGAGGTTCAATATGCTTGAA+CGG | - | chr1_4:36115687-36115706 | None:intergenic | 35.0% | |
| CACATGAAGTTATCTGTTTG+CGG | + | chr1_4:36115773-36115792 | Msa0161260:intron | 35.0% | |
| TATATAACATGCTTGAGAGC+TGG | + | chr1_4:36115848-36115867 | Msa0161260:intron | 35.0% | |
| CACAGAGATATAGCAATAAC+AGG | + | chr1_4:36115876-36115895 | Msa0161260:intron | 35.0% | |
| AGATATAGCAATAACAGGGT+AGG | + | chr1_4:36115881-36115900 | Msa0161260:intron | 35.0% | |
| GATATAGCAATAACAGGGTA+GGG | + | chr1_4:36115882-36115901 | Msa0161260:intron | 35.0% | |
| !!! | AACAATGCTTTTTCTCTGGT+TGG | - | chr1_4:36116174-36116193 | None:intergenic | 35.0% |
| !!! | ATGGAACAATGCTTTTTCTC+TGG | - | chr1_4:36116178-36116197 | None:intergenic | 35.0% |
| !!! | TTAATGCTGTTTCCTCCTTT+TGG | + | chr1_4:36116227-36116246 | Msa0161260:intron | 35.0% |
| ACACTTTCATCCATGTTTGA+TGG | + | chr1_4:36116357-36116376 | Msa0161260:CDS | 35.0% | |
| TTTCATCCATGTTTGATGGA+AGG | + | chr1_4:36116361-36116380 | Msa0161260:CDS | 35.0% | |
| GGAAGGCCAGTTAATATAAT+TGG | + | chr1_4:36116378-36116397 | Msa0161260:CDS | 35.0% | |
| TGTAGTCATTATCCACCAAA+AGG | - | chr1_4:36116487-36116506 | None:intergenic | 35.0% | |
| ! | ATTGTATAGTCTTGAGCCAA+AGG | - | chr1_4:36116614-36116633 | None:intergenic | 35.0% |
| ATGAAGCTATTTGTGGTACT+TGG | + | chr1_4:36116659-36116678 | Msa0161260:three_prime_UTR | 35.0% | |
| TCTTCTTGCAAGATCAATGA+AGG | - | chr1_4:36116701-36116720 | None:intergenic | 35.0% | |
| !!! | GCAACAGTTTTAAGGAACGA+AGG | - | chr1_4:36111471-36111490 | None:intergenic | 40.0% |
| !!! | GACATCACTTTTTCTCGTCT+CGG | + | chr1_4:36111553-36111572 | Msa0161260:CDS | 40.0% |
| ! | TTGAAGAATGGTTGGTCGAT+CGG | + | chr1_4:36111667-36111686 | Msa0161260:intron | 40.0% |
| !! | GGAAAAGAGTACCTTCTGAT+TGG | + | chr1_4:36111688-36111707 | Msa0161260:CDS | 40.0% |
| ! | AAACGTTTTCGCCAATCAGA+AGG | - | chr1_4:36111702-36111721 | None:intergenic | 40.0% |
| ! | GGAATTTTCTTCCCTTCCTA+AGG | + | chr1_4:36111749-36111768 | Msa0161260:CDS | 40.0% |
| AAAAGGGGATCAGAATCCTT+AGG | - | chr1_4:36111768-36111787 | None:intergenic | 40.0% | |
| ! | AGGGTCTAGGGTTTGAAAAA+GGG | - | chr1_4:36111784-36111803 | None:intergenic | 40.0% |
| AAACAAACCTTCAGGGTCTA+GGG | - | chr1_4:36111796-36111815 | None:intergenic | 40.0% | |
| AAAACAAACCTTCAGGGTCT+AGG | - | chr1_4:36111797-36111816 | None:intergenic | 40.0% | |
| !! | TGGATTAGTGTGTGTTTGGT+TGG | + | chr1_4:36111866-36111885 | Msa0161260:intron | 40.0% |
| ! | GTCAACTTGCTTGCATAAGA+TGG | + | chr1_4:36112881-36112900 | Msa0161260:intron | 40.0% |
| TGAAGTCTACTACGGAAAGT+AGG | + | chr1_4:36112979-36112998 | Msa0161260:CDS | 40.0% | |
| ! | GATTATTTGGTTAGGGTGCT+TGG | + | chr1_4:36113097-36113116 | Msa0161260:intron | 40.0% |
| ! | GAGAAGGATCATGTTTTCCT+TGG | + | chr1_4:36113141-36113160 | Msa0161260:CDS | 40.0% |
| AAGTCCTTATCAGAGGAAAC+AGG | + | chr1_4:36113296-36113315 | Msa0161260:intron | 40.0% | |
| !! | AAAAAGAAGTGCTGCACTCT+CGG | + | chr1_4:36113371-36113390 | Msa0161260:CDS | 40.0% |
| CTCACACTGAAAAGGATGTA+AGG | + | chr1_4:36113634-36113653 | Msa0161260:intron | 40.0% | |
| AAGCTGTACTGCAAAACTTG+AGG | + | chr1_4:36113813-36113832 | Msa0161260:CDS | 40.0% | |
| !! | AAATGTTGCTGTTGACTCTG+AGG | + | chr1_4:36113862-36113881 | Msa0161260:CDS | 40.0% |
| ACTTCCACATTGCTTTCTTC+AGG | - | chr1_4:36113932-36113951 | None:intergenic | 40.0% | |
| GAAATATCCCAGTCAATGTC+AGG | - | chr1_4:36113962-36113981 | None:intergenic | 40.0% | |
| ! | CATTGACTGGGATATTTCAG+TGG | + | chr1_4:36113964-36113983 | Msa0161260:CDS | 40.0% |
| TCAGACTTCTTCATCAACTG+AGG | + | chr1_4:36114087-36114106 | Msa0161260:CDS | 40.0% | |
| TCTTCATCAACTGAGGATGT+CGG | + | chr1_4:36114094-36114113 | Msa0161260:CDS | 40.0% | |
| CTCACATGCAGATATATGCT+GGG | + | chr1_4:36114150-36114169 | Msa0161260:CDS | 40.0% | |
| CAGTTGACAGAAAACAAGGA+AGG | + | chr1_4:36114271-36114290 | Msa0161260:CDS | 40.0% | |
| TGACAGAAAACAAGGAAGGA+AGG | + | chr1_4:36114275-36114294 | Msa0161260:CDS | 40.0% | |
| TGTACTCTGTGTCTAAAAGC+TGG | - | chr1_4:36114303-36114322 | None:intergenic | 40.0% | |
| GATTCTCGACGATCTATATG+AGG | + | chr1_4:36114330-36114349 | Msa0161260:CDS | 40.0% | |
| TATGAGTGAAACCAAGACCT+TGG | - | chr1_4:36114387-36114406 | None:intergenic | 40.0% | |
| AATTTCCTATACCCTTGGAC+AGG | + | chr1_4:36114408-36114427 | Msa0161260:intron | 40.0% | |
| CTCATATGTTTATCGAGGGT+GGG | - | chr1_4:36114498-36114517 | None:intergenic | 40.0% | |
| ACTCATATGTTTATCGAGGG+TGG | - | chr1_4:36114499-36114518 | None:intergenic | 40.0% | |
| GTTAGCTGAATTGAAGAACG+AGG | + | chr1_4:36114606-36114625 | Msa0161260:CDS | 40.0% | |
| GTCGCTACAAAATCAAGTAC+AGG | + | chr1_4:36114636-36114655 | Msa0161260:CDS | 40.0% | |
| GCTACAAAATCAAGTACAGG+CGG | + | chr1_4:36114639-36114658 | Msa0161260:CDS | 40.0% | |
| GGTATACTGCTGTAGTACAA+AGG | - | chr1_4:36114671-36114690 | None:intergenic | 40.0% | |
| CATCGTTTCTATAGTATCCG+CGG | - | chr1_4:36114692-36114711 | None:intergenic | 40.0% | |
| TGCTGACAAATAGGAAGACA+AGG | + | chr1_4:36114740-36114759 | Msa0161260:CDS | 40.0% | |
| GCTGACAAATAGGAAGACAA+GGG | + | chr1_4:36114741-36114760 | Msa0161260:CDS | 40.0% | |
| CAGACTAGTAAACTCTTTGG+AGG | + | chr1_4:36114929-36114948 | Msa0161260:CDS | 40.0% | |
| TTGTGTGCTCGTTCAATGTT+AGG | + | chr1_4:36115066-36115085 | Msa0161260:intron | 40.0% | |
| TGTGTGCTCGTTCAATGTTA+GGG | + | chr1_4:36115067-36115086 | Msa0161260:intron | 40.0% | |
| GAATGGAAGGAAGAGAAACA+AGG | - | chr1_4:36115140-36115159 | None:intergenic | 40.0% | |
| CTAGATACCACACTTTATCG+TGG | + | chr1_4:36115226-36115245 | Msa0161260:intron | 40.0% | |
| GTTCAACTAGTCAAACTGGA+CGG | - | chr1_4:36115304-36115323 | None:intergenic | 40.0% | |
| TACGGTTCAACTAGTCAAAC+TGG | - | chr1_4:36115308-36115327 | None:intergenic | 40.0% | |
| !! | ATGAATCCCTGACTGGTTTA+CGG | - | chr1_4:36115326-36115345 | None:intergenic | 40.0% |
| ! | TTGAGATTGGCTGGGATATT+GGG | - | chr1_4:36115354-36115373 | None:intergenic | 40.0% |
| ! | TTTGAGATTGGCTGGGATAT+TGG | - | chr1_4:36115355-36115374 | None:intergenic | 40.0% |
| !!! | TGGTCTGCCTAGTTTTAAAC+CGG | + | chr1_4:36115398-36115417 | Msa0161260:intron | 40.0% |
| ! | CACCAAATTGGTAATTGAGC+CGG | - | chr1_4:36115726-36115745 | None:intergenic | 40.0% |
| TTGTTCCATTGCATATGCAC+CGG | + | chr1_4:36116189-36116208 | Msa0161260:intron | 40.0% | |
| !!! | CTAAGTTTTGAGTGAATCGC+AGG | + | chr1_4:36116287-36116306 | Msa0161260:intron | 40.0% |
| AAAGGCTTCATCACTATCAG+AGG | - | chr1_4:36116469-36116488 | None:intergenic | 40.0% | |
| !! | CTGATAGTGATGAAGCCTTT+TGG | + | chr1_4:36116469-36116488 | Msa0161260:three_prime_UTR | 40.0% |
| ! | ATAGTGATGAAGCCTTTTGG+TGG | + | chr1_4:36116472-36116491 | Msa0161260:three_prime_UTR | 40.0% |
| TGGAAGGTTGCGAATATCGT+CGG | - | chr1_4:36111530-36111549 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTTCTCGTCTCGG+AGG | + | chr1_4:36111556-36111575 | Msa0161260:CDS | 45.0% |
| GGGATCAGAATCCTTAGGAA+GGG | - | chr1_4:36111763-36111782 | None:intergenic | 45.0% | |
| ! | GGGTCTAGGGTTTGAAAAAG+GGG | - | chr1_4:36111783-36111802 | None:intergenic | 45.0% |
| ! | CAGGGTCTAGGGTTTGAAAA+AGG | - | chr1_4:36111785-36111804 | None:intergenic | 45.0% |
| TTTCAAACCCTAGACCCTGA+AGG | + | chr1_4:36111786-36111805 | Msa0161260:CDS | 45.0% | |
| ! | GGATCATGTTTTCCTTGGTG+AGG | + | chr1_4:36113146-36113165 | Msa0161260:CDS | 45.0% |
| TAATAAGTGCAGCCTCACCA+AGG | - | chr1_4:36113161-36113180 | None:intergenic | 45.0% | |
| TGCACCTGTTTCCTCTGATA+AGG | - | chr1_4:36113303-36113322 | None:intergenic | 45.0% | |
| ! | CCTACAGGTTGGGATTTAGA+CGG | + | chr1_4:36113428-36113447 | Msa0161260:intron | 45.0% |
| AAGATCCTGCTAAACGTGCT+TGG | - | chr1_4:36113549-36113568 | None:intergenic | 45.0% | |
| AAGCACGTTTAGCAGGATCT+TGG | + | chr1_4:36113548-36113567 | Msa0161260:CDS | 45.0% | |
| CAGAGATGCTCACACTGAAA+AGG | + | chr1_4:36113626-36113645 | Msa0161260:CDS | 45.0% | |
| AGTTGCAGGAACAATGCATC+AGG | - | chr1_4:36113701-36113720 | None:intergenic | 45.0% | |
| TGGAACTGTAGAAGAAACGG+AGG | + | chr1_4:36114012-36114031 | Msa0161260:CDS | 45.0% | |
| GTAGAAGAAACGGAGGATAC+CGG | + | chr1_4:36114019-36114038 | Msa0161260:CDS | 45.0% | |
| ATATGGACCCAAGCCATTAC+CGG | - | chr1_4:36114041-36114060 | None:intergenic | 45.0% | |
| GCTCACATGCAGATATATGC+TGG | + | chr1_4:36114149-36114168 | Msa0161260:CDS | 45.0% | |
| GAATGCATCAAATGCAGTGC+TGG | + | chr1_4:36114216-36114235 | Msa0161260:CDS | 45.0% | |
| ! | CTGAGATAAGGCATCTGGAA+GGG | - | chr1_4:36114254-36114273 | None:intergenic | 45.0% |
| ! | ACTGAGATAAGGCATCTGGA+AGG | - | chr1_4:36114255-36114274 | None:intergenic | 45.0% |
| ! | GTCAACTGAGATAAGGCATC+TGG | - | chr1_4:36114259-36114278 | None:intergenic | 45.0% |
| AACCAAGACCTTGGCAGAAT+AGG | - | chr1_4:36114378-36114397 | None:intergenic | 45.0% | |
| GTTTCTTTCTGCCTGTCCAA+GGG | - | chr1_4:36114422-36114441 | None:intergenic | 45.0% | |
| TGTTTCTTTCTGCCTGTCCA+AGG | - | chr1_4:36114423-36114442 | None:intergenic | 45.0% | |
| TGTACTACAGCAGTATACCG+CGG | + | chr1_4:36114672-36114691 | Msa0161260:CDS | 45.0% | |
| !! | CAAGTTGAAAGACGGGTTGA+AGG | + | chr1_4:36114971-36114990 | Msa0161260:CDS | 45.0% |
| GTGTGCTCGTTCAATGTTAG+GGG | + | chr1_4:36115068-36115087 | Msa0161260:intron | 45.0% | |
| !! | TCAAACTGGACGGTTTGGTA+TGG | - | chr1_4:36115294-36115313 | None:intergenic | 45.0% |
| ACTAGTCAAACTGGACGGTT+TGG | - | chr1_4:36115299-36115318 | None:intergenic | 45.0% | |
| AGTTGAACCGTAAACCAGTC+AGG | + | chr1_4:36115316-36115335 | Msa0161260:intron | 45.0% | |
| GTTGAACCGTAAACCAGTCA+GGG | + | chr1_4:36115317-36115336 | Msa0161260:intron | 45.0% | |
| GGCTTAAATGAATCCCTGAC+TGG | - | chr1_4:36115333-36115352 | None:intergenic | 45.0% | |
| !!! | TCTGCCTAGTTTTAAACCGG+TGG | + | chr1_4:36115401-36115420 | Msa0161260:intron | 45.0% |
| !! | CTCACCACCGGTTTAAAACT+AGG | - | chr1_4:36115408-36115427 | None:intergenic | 45.0% |
| TTTAAACCGGTGGTGAGAAG+TGG | + | chr1_4:36115411-36115430 | Msa0161260:intron | 45.0% | |
| TTCAAACCACTTCTCACCAC+CGG | - | chr1_4:36115420-36115439 | None:intergenic | 45.0% | |
| TCAAGCTTCAGTACCTTCAC+CGG | + | chr1_4:36115704-36115723 | Msa0161260:intron | 45.0% | |
| ! | ATTGGTAATTGAGCCGGTGA+AGG | - | chr1_4:36115720-36115739 | None:intergenic | 45.0% |
| !! | CACCGGCTCAATTACCAATT+TGG | + | chr1_4:36115721-36115740 | Msa0161260:intron | 45.0% |
| TAACATGCTTGAGAGCTGGA+AGG | + | chr1_4:36115852-36115871 | Msa0161260:intron | 45.0% | |
| TGAGTGAGAACTACTCTGGT+GGG | - | chr1_4:36115924-36115943 | None:intergenic | 45.0% | |
| AAACCAGTGAAAGGGCCAAA+AGG | - | chr1_4:36116245-36116264 | None:intergenic | 45.0% | |
| TTTGAGTGAATCGCAGGATG+CGG | + | chr1_4:36116293-36116312 | Msa0161260:intron | 45.0% | |
| TGCGGCTGTGACAAAAACAA+AGG | + | chr1_4:36116311-36116330 | Msa0161260:CDS | 45.0% | |
| !! | AACTGGCCTTCCATCAAACA+TGG | - | chr1_4:36116370-36116389 | None:intergenic | 45.0% |
| ATCAACACTCTGTTGACCAG+TGG | + | chr1_4:36116405-36116424 | Msa0161260:CDS | 45.0% | |
| GGAAGGTTGCGAATATCGTC+GGG | - | chr1_4:36111529-36111548 | None:intergenic | 50.0% | |
| GGGGATCAGAATCCTTAGGA+AGG | - | chr1_4:36111764-36111783 | None:intergenic | 50.0% | |
| TGAGTATCTCACCGCAGAAC+CGG | - | chr1_4:36113024-36113043 | None:intergenic | 50.0% | |
| GCAGAAGATTCAACAGCAGC+TGG | + | chr1_4:36113320-36113339 | Msa0161260:CDS | 50.0% | |
| GTTGAAGCTTGTCAGGAGCT+TGG | + | chr1_4:36113405-36113424 | Msa0161260:CDS | 50.0% | |
| CCGTCTAAATCCCAACCTGT+AGG | - | chr1_4:36113431-36113450 | None:intergenic | 50.0% | |
| CACTTCCAAGCACGTTTAGC+AGG | + | chr1_4:36113541-36113560 | Msa0161260:CDS | 50.0% | |
| TTGCTGCTCCTGACATTGAC+TGG | + | chr1_4:36113951-36113970 | Msa0161260:CDS | 50.0% | |
| ! | TGCTGCTCCTGACATTGACT+GGG | + | chr1_4:36113952-36113971 | Msa0161260:CDS | 50.0% |
| GAAACGGAGGATACCGGTAA+TGG | + | chr1_4:36114025-36114044 | Msa0161260:CDS | 50.0% | |
| ! | GAGGATACCGGTAATGGCTT+GGG | + | chr1_4:36114031-36114050 | Msa0161260:CDS | 50.0% |
| AGAAGTCTGAATGGCCTCAG+AGG | - | chr1_4:36114077-36114096 | None:intergenic | 50.0% | |
| GCTTACCTCCTATTCTGCCA+AGG | + | chr1_4:36114367-36114386 | Msa0161260:intron | 50.0% | |
| CAAGACCTTGGCAGAATAGG+AGG | - | chr1_4:36114375-36114394 | None:intergenic | 50.0% | |
| CTCCTATTCTGCCAAGGTCT+TGG | + | chr1_4:36114373-36114392 | Msa0161260:intron | 50.0% | |
| ! | TTCTGCCTGTCCAAGGGTAT+AGG | - | chr1_4:36114416-36114435 | None:intergenic | 50.0% |
| !! | GAAAGACGGGTTGAAGGACT+TGG | + | chr1_4:36114977-36114996 | Msa0161260:CDS | 50.0% |
| !! | GGTGAAGGTACTGAAGCTTG+AGG | - | chr1_4:36115705-36115724 | None:intergenic | 50.0% |
| GAGTGAGAACTACTCTGGTG+GGG | - | chr1_4:36115923-36115942 | None:intergenic | 50.0% | |
| GTGAGTGAGAACTACTCTGG+TGG | - | chr1_4:36115925-36115944 | None:intergenic | 50.0% | |
| GCTGTGAGTGAGAACTACTC+TGG | - | chr1_4:36115928-36115947 | None:intergenic | 50.0% | |
| ! | TCCATTGCATATGCACCGGT+TGG | + | chr1_4:36116193-36116212 | Msa0161260:intron | 50.0% |
| ACTCTGTTGACCAGTGGTCT+TGG | + | chr1_4:36116411-36116430 | Msa0161260:CDS | 50.0% | |
| TCATCATGCTCCAAGACCAC+TGG | - | chr1_4:36116424-36116443 | None:intergenic | 50.0% | |
| TGGTCGTCTTTCCGGTTCTG+CGG | + | chr1_4:36113010-36113029 | Msa0161260:CDS | 55.0% | |
| GCTGGCAGAACTTGATCGCA+AGG | + | chr1_4:36113338-36113357 | Msa0161260:CDS | 55.0% | |
| TTGTCAGGAGCTTGGCCTAC+AGG | + | chr1_4:36113413-36113432 | Msa0161260:CDS | 55.0% | |
| AGGAGCTTGGCCTACAGGTT+GGG | + | chr1_4:36113418-36113437 | Msa0161260:intron | 55.0% | |
| ! | GGAGGATACCGGTAATGGCT+TGG | + | chr1_4:36114030-36114049 | Msa0161260:CDS | 55.0% |
| GGACTTGGCTACTAAGCGCA+TGG | + | chr1_4:36114992-36115011 | Msa0161260:CDS | 55.0% | |
| GCCAACCGGTGCATATGCAA+TGG | - | chr1_4:36116197-36116216 | None:intergenic | 55.0% | |
| CCAGTGAAAGGGCCAAAAGG+AGG | - | chr1_4:36116242-36116261 | None:intergenic | 55.0% | |
| ! | CCTCCTTTTGGCCCTTTCAC+TGG | + | chr1_4:36116239-36116258 | Msa0161260:intron | 55.0% |
| CAGGAGCTTGGCCTACAGGT+TGG | + | chr1_4:36113417-36113436 | Msa0161260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 36111346 | 36116740 | 36111346 | ID=Msa0161260;Name=Msa0161260 |
| chr1_4 | mRNA | 36111346 | 36116740 | 36111346 | ID=Msa0161260-mRNA-1;Parent=Msa0161260;Name=Msa0161260-mRNA-1;_AED=0.06;_eAED=0.06;_QI=171|1|1|1|1|1|10|300|564 |
| chr1_4 | exon | 36111346 | 36111577 | 36111346 | ID=Msa0161260-mRNA-1:exon:10712;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36111673 | 36111807 | 36111673 | ID=Msa0161260-mRNA-1:exon:10713;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36112937 | 36113031 | 36112937 | ID=Msa0161260-mRNA-1:exon:10714;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36113111 | 36113205 | 36113111 | ID=Msa0161260-mRNA-1:exon:10715;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36113299 | 36113434 | 36113299 | ID=Msa0161260-mRNA-1:exon:10716;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36113501 | 36113650 | 36113501 | ID=Msa0161260-mRNA-1:exon:10717;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36113803 | 36114351 | 36113803 | ID=Msa0161260-mRNA-1:exon:10718;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36114583 | 36114791 | 36114583 | ID=Msa0161260-mRNA-1:exon:10719;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36114920 | 36115052 | 36114920 | ID=Msa0161260-mRNA-1:exon:10720;Parent=Msa0161260-mRNA-1 |
| chr1_4 | exon | 36116309 | 36116740 | 36116309 | ID=Msa0161260-mRNA-1:exon:10721;Parent=Msa0161260-mRNA-1 |
| chr1_4 | five_prime_UTR | 36111346 | 36111516 | 36111346 | ID=Msa0161260-mRNA-1:five_prime_utr;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36111517 | 36111577 | 36111517 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36111673 | 36111807 | 36111673 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36112937 | 36113031 | 36112937 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36113111 | 36113205 | 36113111 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36113299 | 36113434 | 36113299 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36113501 | 36113650 | 36113501 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36113803 | 36114351 | 36113803 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36114583 | 36114791 | 36114583 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36114920 | 36115052 | 36114920 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | CDS | 36116309 | 36116440 | 36116309 | ID=Msa0161260-mRNA-1:cds;Parent=Msa0161260-mRNA-1 |
| chr1_4 | three_prime_UTR | 36116441 | 36116740 | 36116441 | ID=Msa0161260-mRNA-1:three_prime_utr;Parent=Msa0161260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
