AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0162670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162670 MtrunA17_Chr1g0177101 74.603 315 40 6 1 279 1 311 3.71e-152 427
Msa0162670 MtrunA17_Chr7g0267571 50.649 308 97 10 14 274 14 313 5.80e-88 265
Msa0162670 MtrunA17_Chr1g0168601 42.282 149 78 1 104 252 93 233 6.13e-36 128
Msa0162670 MtrunA17_Chr3g0087481 42.759 145 83 0 104 248 91 235 1.52e-35 127
Msa0162670 MtrunA17_Chr1g0181111 30.622 209 122 2 63 248 64 272 3.61e-27 106
Msa0162670 MtrunA17_Chr3g0116631 36.735 147 91 2 104 250 140 284 4.46e-26 103
Msa0162670 MtrunA17_Chr4g0058151 35.862 145 88 2 104 248 153 292 1.51e-25 102
Msa0162670 MtrunA17_Chr5g0411091 37.681 138 82 2 112 248 134 268 2.00e-19 86.3
Msa0162670 MtrunA17_Chr3g0119311 35.955 89 55 1 172 260 36 122 1.04e-16 75.1
Msa0162670 MtrunA17_Chr3g0132451 26.840 231 142 6 25 245 43 256 1.38e-15 75.1
Msa0162670 MtrunA17_Chr7g0219021 36.471 85 54 0 170 254 38 122 5.04e-15 73.2
Msa0162670 MtrunA17_Chr2g0288251 26.364 220 136 8 51 256 32 239 2.76e-14 72.4
Msa0162670 MtrunA17_Chr2g0328791 27.568 185 113 4 81 252 13 189 3.00e-14 72.4
Msa0162670 MtrunA17_Chr4g0074711 27.320 194 118 5 69 248 60 244 1.72e-13 70.1
Msa0162670 MtrunA17_Chr4g0045221 27.368 190 122 4 81 257 114 300 2.20e-13 69.7
Msa0162670 MtrunA17_Chr1g0179701 28.571 147 99 3 105 248 272 415 3.49e-13 69.3
Msa0162670 MtrunA17_Chr3g0121631 39.506 81 48 1 170 250 34 113 5.96e-13 65.1
Msa0162670 MtrunA17_Chr2g0278661 36.842 76 48 0 173 248 8 83 1.05e-12 66.2
Msa0162670 MtrunA17_Chr4g0061451 35.366 82 51 1 173 254 43 122 1.32e-12 66.2
Msa0162670 MtrunA17_Chr7g0265341 32.576 132 81 4 112 243 196 319 1.90e-12 67.4
Msa0162670 MtrunA17_Chr7g0265341 27.215 158 95 4 103 248 278 427 7.24e-12 65.5
Msa0162670 MtrunA17_Chr7g0219031 41.538 65 38 0 170 234 38 102 4.39e-12 62.0
Msa0162670 MtrunA17_Chr1g0153181 29.897 194 111 5 71 253 214 393 4.63e-12 66.2
Msa0162670 MtrunA17_Chr4g0035051 31.250 80 55 0 169 248 5 84 5.44e-12 61.6
Msa0162670 MtrunA17_Chr3g0110211 25.676 148 97 3 102 248 54 189 5.62e-12 65.5
Msa0162670 MtrunA17_Chr4g0050781 33.766 77 51 0 172 248 7 83 7.98e-12 63.2
Msa0162670 MtrunA17_Chr4g0035001 30.864 81 56 0 168 248 2 82 9.19e-12 62.0
Msa0162670 MtrunA17_Chr4g0035031 33.735 83 55 0 166 248 2 84 1.55e-11 62.0
Msa0162670 MtrunA17_Chr4g0070231 25.581 172 111 3 109 273 78 239 2.22e-11 63.5
Msa0162670 MtrunA17_Chr1g0210241 35.065 77 50 0 172 248 7 83 2.39e-11 62.8
Msa0162670 MtrunA17_Chr1g0190211 37.838 74 46 0 172 245 132 205 6.32e-11 61.2
Msa0162670 MtrunA17_Chr1g0153871 26.126 222 136 6 50 258 71 277 7.05e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162670 AT3G52380.1 52.217 203 89 4 84 278 126 328 4.15e-69 217
Msa0162670 AT1G60000.1 43.448 145 75 1 104 248 116 253 3.68e-35 127
Msa0162670 AT3G52150.2 39.333 150 89 1 101 248 104 253 5.33e-29 111
Msa0162670 AT3G52150.1 39.333 150 89 1 101 248 104 253 5.33e-29 111
Msa0162670 AT5G50250.1 40.000 145 82 4 104 248 144 283 4.16e-27 107
Msa0162670 AT2G35410.1 34.742 213 99 6 67 249 70 272 5.28e-26 104
Msa0162670 AT2G37220.1 33.333 159 92 2 104 248 122 280 8.78e-26 103
Msa0162670 AT4G24770.1 37.086 151 89 5 104 254 181 325 1.60e-25 103
Msa0162670 AT4G24770.2 37.086 151 89 5 104 254 181 325 1.60e-25 103
Msa0162670 AT1G01080.1 35.036 137 83 3 110 241 145 280 2.79e-17 80.5
Msa0162670 AT1G01080.2 35.036 137 83 3 110 241 146 281 3.41e-17 80.1
Msa0162670 AT1G01080.3 34.646 127 78 2 110 231 145 271 1.03e-15 75.9
Msa0162670 AT3G53460.1 36.364 77 49 0 172 248 257 333 7.54e-15 73.9
Msa0162670 AT3G53460.3 36.364 77 49 0 172 248 257 333 7.54e-15 73.9
Msa0162670 AT3G53460.2 36.364 77 49 0 172 248 257 333 7.54e-15 73.9
Msa0162670 AT3G53460.4 36.364 77 49 0 172 248 278 354 8.95e-15 73.9
Msa0162670 AT4G13850.3 40.000 85 49 1 173 257 36 118 1.01e-14 70.1
Msa0162670 AT4G13850.2 40.000 85 49 1 173 257 36 118 1.23e-14 70.1
Msa0162670 AT4G13850.1 40.000 85 49 1 173 257 36 118 1.37e-14 70.1
Msa0162670 AT5G19350.1 25.352 213 125 7 55 252 4 197 5.50e-14 72.0
Msa0162670 AT3G08000.1 33.010 103 67 1 173 275 42 142 5.59e-14 68.2
Msa0162670 AT5G19350.2 25.352 213 125 7 55 252 4 197 5.81e-14 71.6
Msa0162670 AT4G13850.4 39.759 83 48 1 173 255 36 116 1.20e-13 67.0
Msa0162670 AT5G54900.1 25.243 206 131 6 78 268 55 252 4.45e-13 68.9
Msa0162670 AT3G23830.2 36.471 85 52 1 173 257 36 118 4.79e-13 65.5
Msa0162670 AT3G23830.1 36.471 85 52 1 173 257 36 118 4.79e-13 65.5
Msa0162670 AT3G14100.1 28.313 166 102 3 116 274 98 253 1.50e-12 67.8
Msa0162670 AT5G61030.2 35.802 81 52 0 170 250 38 118 1.54e-12 67.0
Msa0162670 AT5G61030.1 35.802 81 52 0 170 250 38 118 1.54e-12 67.0
Msa0162670 AT1G54080.1 27.273 165 103 3 116 273 102 256 1.64e-12 67.4
Msa0162670 AT3G16380.1 29.333 150 99 4 104 248 232 379 1.91e-12 67.4
Msa0162670 AT4G27000.1 27.326 172 111 5 104 270 111 273 4.28e-12 66.2
Msa0162670 AT5G47320.1 38.889 90 53 1 173 262 32 119 5.05e-12 64.3
Msa0162670 AT1G47490.2 26.271 236 147 8 32 249 49 275 5.07e-12 65.5
Msa0162670 AT2G23350.1 32.450 151 94 3 104 248 255 403 5.22e-12 66.2
Msa0162670 AT4G09040.1 29.710 138 87 3 112 245 132 263 5.36e-12 65.5
Msa0162670 AT3G26420.1 31.633 98 63 1 169 266 4 97 5.67e-12 64.7
Msa0162670 AT4G09040.2 29.710 138 87 3 112 245 72 203 8.02e-12 64.3
Msa0162670 AT1G47490.1 26.271 236 147 8 32 249 49 275 9.64e-12 65.1
Msa0162670 AT4G39260.3 31.169 77 53 0 172 248 6 82 1.33e-11 60.1
Msa0162670 AT4G39260.2 30.769 78 54 0 171 248 5 82 1.37e-11 61.2
Msa0162670 AT2G21660.2 31.250 80 55 0 169 248 5 84 2.60e-11 61.2
Msa0162670 AT4G39260.1 30.769 78 54 0 171 248 5 82 3.29e-11 61.2
Msa0162670 AT2G21660.1 31.250 80 55 0 169 248 5 84 3.54e-11 61.2
Msa0162670 AT1G54080.2 27.219 169 102 4 116 273 102 260 3.70e-11 63.5
Msa0162670 AT3G19130.1 26.455 189 117 5 78 252 103 283 6.49e-11 62.8
Msa0162670 AT1G11650.1 25.000 220 126 7 49 252 40 236 8.81e-11 62.0
Msa0162670 AT4G13860.1 37.333 75 47 0 173 247 4 78 9.24e-11 57.8

Find 295 sgRNAs with CRISPR-Local

Find 738 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCTACTTTGGGCACTTC+TGG 0.130934 1_4:-39921052 None:intergenic
CCGACCTTTACGACTGAATT+TGG 0.142633 1_4:+39921442 Msa0162670:CDS
GATGGTGTTCAAACAGTTTA+TGG 0.162791 1_4:+39926813 Msa0162670:three_prime_UTR
CAACTAGGGGATTTGTTAAA+TGG 0.198919 1_4:+39926330 Msa0162670:three_prime_UTR
GATAGCTTGGAAATGTTATT+TGG 0.203210 1_4:+39921527 Msa0162670:CDS
AGTTGGAGGTAGGGTTATTA+AGG 0.221845 1_4:+39921021 Msa0162670:CDS
GATCGGAAAACAGAAATTTC+TGG 0.226659 1_4:-39926386 None:intergenic
GGAACCATAATGGAATATTT+TGG 0.235298 1_4:-39925223 None:intergenic
GGAACCATAATGGAATATTT+TGG 0.235298 1_4:-39928623 None:intergenic
TCTGGTTCCTGAAAATATTA+AGG 0.249090 1_4:+39927044 Msa0162670:three_prime_UTR
CCATGGTCCCTTCATATTGC+AGG 0.250844 1_4:+39926470 Msa0162670:three_prime_UTR
AATCTGTGTCATATATCTTA+TGG 0.251187 1_4:+39929997 Msa0162670:three_prime_UTR
TCCAGAAGCATATCAGATTT+AGG 0.259112 1_4:-39925072 None:intergenic
AACGGAAAATCTCGCGGATA+TGG 0.262481 1_4:+39921232 Msa0162670:CDS
TCCTAGCGCTGATATGCTTT+TGG 0.276116 1_4:+39928466 Msa0162670:three_prime_UTR
TCCTAAATCTGATATGCTTC+TGG 0.287865 1_4:+39925071 Msa0162670:three_prime_UTR
CAGGCCAAAATATTCCATTA+TGG 0.292003 1_4:+39925219 Msa0162670:intron
CAGGCCAAAATATTCCATTA+TGG 0.292003 1_4:+39928619 Msa0162670:intron
CAATTAGAAGCTTGAGATTA+GGG 0.296290 1_4:-39925617 None:intergenic
CAACAAAGAGTCTCCTTGAT+TGG 0.305570 1_4:-39919633 None:intergenic
TAGGTTGGAGCAGATGAATT+TGG 0.306305 1_4:+39924913 Msa0162670:intron
TGATTAACATTCACAGCATT+TGG 0.310638 1_4:+39929781 Msa0162670:three_prime_UTR
GAAGAAACTAATTTCATGTT+TGG 0.313427 1_4:+39929817 Msa0162670:three_prime_UTR
AGGTTGGAGCAGATGAATTT+GGG 0.318393 1_4:+39924914 Msa0162670:intron
CCTGAAAATATTAAGGTATT+GGG 0.321240 1_4:+39927051 Msa0162670:three_prime_UTR
TCCTGAAAATATTAAGGTAT+TGG 0.322587 1_4:+39927050 Msa0162670:three_prime_UTR
CAATAAGAAGCTTGAGATTA+GGG 0.330590 1_4:-39929016 None:intergenic
TGTTCTGTGTGGGAAGTTAA+AGG 0.331544 1_4:-39919425 None:intergenic
GCATATCAGCGCTAGGATTT+CGG 0.331860 1_4:-39928460 None:intergenic
TTGTGCGCCTCGTGGATTAA+AGG 0.337267 1_4:+39926869 Msa0162670:three_prime_UTR
ACAGAGAGAGGGGCAATTCC+TGG 0.339155 1_4:+39929595 Msa0162670:intron
GAAATGGTATAATGAGCATT+TGG 0.340160 1_4:+39925376 Msa0162670:three_prime_UTR
AGCGGACTGGTTGTTTGTTT+TGG 0.340563 1_4:+39927624 Msa0162670:three_prime_UTR
AATAAAACCCAACGTGGTTC+TGG 0.343732 1_4:-39928399 None:intergenic
GCATATCAGATTTAGGATTT+CGG 0.347289 1_4:-39925065 None:intergenic
TGCCTACTTTGGGCACTTCT+GGG 0.350774 1_4:-39921051 None:intergenic
CAAAATAATGTTGATACATC+TGG 0.351909 1_4:+39924961 Msa0162670:three_prime_UTR
ACTTACCTTGGTTGCTTGCC+TGG 0.352024 1_4:-39927182 None:intergenic
AACAAAAGCTAATGTGGTTC+TGG 0.352720 1_4:-39925004 None:intergenic
AGGAAATAATGTTGATAGCT+TGG 0.353289 1_4:+39921514 Msa0162670:CDS
CCTATATTGCATCAGATTGC+TGG 0.353324 1_4:-39929639 None:intergenic
CGAATTTGAGATTGACACTA+TGG 0.353768 1_4:+39925334 Msa0162670:three_prime_UTR
GGGCACGGGGACAGAGAGAG+GGG 0.361649 1_4:+39929585 Msa0162670:intron
ACAATTAGAAGCTTGAGATT+AGG 0.362928 1_4:-39925618 None:intergenic
ATCTGTGTCATATATCTTAT+GGG 0.363244 1_4:+39929998 Msa0162670:three_prime_UTR
GAGACGTGGACTATTGATTC+TGG 0.371249 1_4:+39927026 Msa0162670:three_prime_UTR
CCAGCAATCTGATGCAATAT+AGG 0.374599 1_4:+39929639 Msa0162670:three_prime_UTR
CGAATTACCTCGAAAATACT+TGG 0.375128 1_4:-39929412 None:intergenic
GAATCAATTCGAATGTTTGA+TGG 0.379569 1_4:+39920289 Msa0162670:CDS
CAAACTCGGGTTTGGTTTGA+AGG 0.380328 1_4:+39926281 Msa0162670:three_prime_UTR
ACAATAAGAAGCTTGAGATT+AGG 0.381243 1_4:-39929017 None:intergenic
TGAATTTGGCTGTGGATAAC+AGG 0.383307 1_4:+39921456 Msa0162670:CDS
CAAACTTGAAGGGCTTCAAT+AGG 0.386956 1_4:-39926849 None:intergenic
GTTAAACCTGTTGGCACAAC+CGG 0.387954 1_4:+39925940 Msa0162670:three_prime_UTR
ATTGTTGTTCTTCCTCCTCA+TGG 0.388722 1_4:-39919531 None:intergenic
TTGAAAAGGTGATGGTTAAC+GGG 0.391257 1_4:-39926261 None:intergenic
GAACTGGTATAATGAGCATA+TGG 0.394625 1_4:+39928776 Msa0162670:three_prime_UTR
GCAGTTGGCATCTCTAAGTT+GGG 0.396668 1_4:+39924336 Msa0162670:three_prime_UTR
GCAGTTGGCATCTCTAAGTT+GGG 0.396668 1_4:+39927741 Msa0162670:three_prime_UTR
TCAAACTGATGGAACCATAA+TGG 0.399197 1_4:-39925233 None:intergenic
TCAAACTGATGGAACCATAA+TGG 0.399197 1_4:-39928633 None:intergenic
TTTGAAAAGGTGATGGTTAA+CGG 0.402781 1_4:-39926262 None:intergenic
AACAAAGAGTCTCCTTGATT+GGG 0.407980 1_4:-39919632 None:intergenic
CATAGTGTCAATCTCAAATT+CGG 0.408332 1_4:-39925333 None:intergenic
GTACTGCAACATTCAAGCTT+TGG 0.411764 1_4:+39929751 Msa0162670:three_prime_UTR
CATGGTGTCAATCTCAAATT+CGG 0.412055 1_4:-39928733 None:intergenic
AATAGGTTTCGTGCCATCAA+TGG 0.416290 1_4:+39927656 Msa0162670:three_prime_UTR
CAAAGGCTTCTCTAAGATCC+TGG 0.418070 1_4:-39921162 None:intergenic
TTTGTTACACATAGAGCTAA+TGG 0.419627 1_4:+39925021 Msa0162670:three_prime_UTR
AAATGGTATAATGAGCATTT+GGG 0.420401 1_4:+39925377 Msa0162670:three_prime_UTR
CCGGTAATTGATCAAAATAA+AGG 0.422043 1_4:+39921494 Msa0162670:CDS
GGCAGTTGGCATCTCTAAGT+TGG 0.428328 1_4:+39924335 Msa0162670:three_prime_UTR
GGCAGTTGGCATCTCTAAGT+TGG 0.428328 1_4:+39927740 Msa0162670:three_prime_UTR
GGATCTAGCCGATGTAATAA+AGG 0.430417 1_4:+39925398 Msa0162670:three_prime_UTR
TGAAGAGGGTTGAATAATTG+AGG 0.432626 1_4:-39919487 None:intergenic
GTGTGGGAAGTTAAAGGAAA+TGG 0.433410 1_4:-39919419 None:intergenic
CCAACACCGGTTGTGCCAAC+AGG 0.433859 1_4:-39925946 None:intergenic
TTGTAAGCAGCCGTTTCGGC+TGG 0.438140 1_4:-39927690 None:intergenic
TGAATTACCTCGAAAATACT+TGG 0.438736 1_4:-39926012 None:intergenic
GAAGCCTTTGCTGAGCAATC+AGG 0.442092 1_4:+39921175 Msa0162670:CDS
GAAGTCTGAGGTTCGAGAAC+AGG 0.442945 1_4:-39926231 None:intergenic
CACGAGGCGCACAAACTTGA+AGG 0.443534 1_4:-39926860 None:intergenic
GTAGGCAAAAGGGTACAAAT+AGG 0.445334 1_4:+39921067 Msa0162670:CDS
AAGTGCCCAAAGTAGGCAAA+AGG 0.446953 1_4:+39921056 Msa0162670:CDS
TGGCAAAACATAACGCTTCT+CGG 0.447446 1_4:-39929529 None:intergenic
TTTCTTGTAAGCAGCCGTTT+CGG 0.448612 1_4:-39927694 None:intergenic
GGGGCACGGGGACAGAGAGA+GGG 0.449099 1_4:+39929584 Msa0162670:intron
GGATCTAGCAGATGTAATAA+AGG 0.449697 1_4:+39928798 Msa0162670:three_prime_UTR
AATCAGGCTTACTGAGTGCC+AGG 0.450781 1_4:+39921191 Msa0162670:CDS
CTGAATGTCTTCGCCAACTA+GGG 0.452242 1_4:+39926316 Msa0162670:three_prime_UTR
AAGAGTCTGTGGTGGCAGAT+AGG 0.457732 1_4:-39919370 None:intergenic
CTGGTGATGCATTTGTTAGT+GGG 0.458027 1_4:+39929365 Msa0162670:three_prime_UTR
TCTAATGCCAGAACCACGTT+GGG 0.459889 1_4:+39928392 Msa0162670:three_prime_UTR
GCTGGTGATGCATTTGTTAG+TGG 0.461233 1_4:+39929364 Msa0162670:three_prime_UTR
AATATTAAGGTATTGGGTGG+GGG 0.461783 1_4:+39927057 Msa0162670:three_prime_UTR
AATTGAAACCTGCAATATGA+AGG 0.464575 1_4:-39926478 None:intergenic
GGAGACGCTCCACCCATTGA+TGG 0.464703 1_4:-39927669 None:intergenic
CATTTAACAAATCCCCTAGT+TGG 0.465854 1_4:-39926329 None:intergenic
GTTGGTGATGCATTTGTTAG+TGG 0.467897 1_4:+39925964 Msa0162670:three_prime_UTR
TAATTGAGGGATTAAATTGA+AGG 0.470815 1_4:-39919473 None:intergenic
CCAGCACCAGTTGTGTCAAC+AGG 0.471899 1_4:-39929346 None:intergenic
GAACATCACTGATGCTGTCC+AGG 0.473168 1_4:+39927164 Msa0162670:three_prime_UTR
TTGGTGATGCATTTGTTAGT+GGG 0.474932 1_4:+39925965 Msa0162670:three_prime_UTR
TCAGACGAGGCTGCTCGAAC+TGG 0.475775 1_4:+39928760 Msa0162670:three_prime_UTR
GAAGAGGGTTGAATAATTGA+GGG 0.476001 1_4:-39919486 None:intergenic
ATTGTATGTGGCGTGATCAC+GGG 0.478446 1_4:+39929551 Msa0162670:three_prime_UTR
ATAGGTTTCGTGCCATCAAT+GGG 0.481493 1_4:+39927657 Msa0162670:three_prime_UTR
AAAGCGTTAAAATTTGCAAT+GGG 0.481506 1_4:+39926135 Msa0162670:three_prime_UTR
CGGCAGTGGAGAAGTAGGTC+GGG 0.482863 1_4:-39926208 None:intergenic
ACAGAACTCAGACCTAAAAC+AGG 0.483263 1_4:+39919597 Msa0162670:CDS
AGAGTCTGTGGTGGCAGATA+GGG 0.485185 1_4:-39919369 None:intergenic
GATGCCAACTGCCACGTTTG+CGG 0.486096 1_4:-39927730 None:intergenic
AAGATCTATGCTGGAAACCT+TGG 0.486607 1_4:+39921124 Msa0162670:CDS
AACCAAACCCGAGTTTGAAA+AGG 0.487924 1_4:-39926275 None:intergenic
AAGCTTCTAATTGTTACTGA+AGG 0.488063 1_4:+39925627 Msa0162670:three_prime_UTR
TCAGCCGAGGCTGCTCGAAA+TGG 0.490523 1_4:+39925360 Msa0162670:three_prime_UTR
GTTCGAGCAGCCTCGTCTGA+TGG 0.491161 1_4:-39928757 None:intergenic
AATGGAGGAATGAGTAGTAA+AGG 0.493216 1_4:-39919401 None:intergenic
AATACAACATCGTCATCATA+AGG 0.493335 1_4:-39925579 None:intergenic
CAAATAGGCTCAAACTATAG+AGG 0.494932 1_4:+39921082 Msa0162670:CDS
GTTGAACCTGTTGACACAAC+TGG 0.496302 1_4:+39929340 Msa0162670:three_prime_UTR
AAGCTTCTTATTGTTACTGA+AGG 0.496838 1_4:+39929026 Msa0162670:three_prime_UTR
CCTGTTGACACAACTGGTGC+TGG 0.498429 1_4:+39929346 Msa0162670:three_prime_UTR
GGTTCGAGAACAGGCGGCAG+TGG 0.498877 1_4:-39926222 None:intergenic
ACAGGCGGCAGTGGAGAAGT+AGG 0.499372 1_4:-39926213 None:intergenic
CAGTTGGCATCTCTAAGTTG+GGG 0.501143 1_4:+39924337 Msa0162670:three_prime_UTR
CAGTTGGCATCTCTAAGTTG+GGG 0.501143 1_4:+39927742 Msa0162670:three_prime_UTR
TTTCGAGCAGCCTCGGCTGA+TGG 0.501826 1_4:-39925357 None:intergenic
GATCTCAATTCTTGTGGTAG+TGG 0.503726 1_4:+39926405 Msa0162670:three_prime_UTR
AAATATTAAGGTATTGGGTG+GGG 0.504989 1_4:+39927056 Msa0162670:three_prime_UTR
AATACAACATCATCATCATA+AGG 0.505738 1_4:-39928978 None:intergenic
TAGGTTGGAGCAAATGAATG+TGG 0.505893 1_4:+39928308 Msa0162670:intron
AGGTTGGAGCAAATGAATGT+GGG 0.509327 1_4:+39928309 Msa0162670:intron
TTTACGACTGAATTTGGCTG+TGG 0.511362 1_4:+39921448 Msa0162670:CDS
CTATGCTGGAAACCTTGGTT+GGG 0.512049 1_4:+39921129 Msa0162670:CDS
TGAAATTAGTTTCTTCACAT+TGG 0.513254 1_4:-39929810 None:intergenic
AGGATTTGCGTTTGTTACAA+TGG 0.514453 1_4:+39920246 Msa0162670:CDS
TCAATTACCGGAGGAGATGA+AGG 0.515198 1_4:-39921482 None:intergenic
AAAATTTACCTTTATTACAT+CGG 0.515702 1_4:-39925406 None:intergenic
GATTGTACATCAATCAAAGA+AGG 0.516238 1_4:+39929890 Msa0162670:three_prime_UTR
TATACCATTTCGAGCAGCCT+CGG 0.519066 1_4:-39925364 None:intergenic
AGCCCTCACAAGATCTATGC+TGG 0.520202 1_4:+39921115 Msa0162670:CDS
CAGGAAGCCTTCATCTCCTC+CGG 0.520439 1_4:+39921475 Msa0162670:CDS
GCAAGATGAGCCGACTTGCA+TGG 0.520566 1_4:-39925264 None:intergenic
GCAAGATGAGCCGACTTGCA+TGG 0.520566 1_4:-39928664 None:intergenic
CATTGTATGTGGCGTGATCA+CGG 0.522413 1_4:+39929550 Msa0162670:three_prime_UTR
GTGATGGTTAACGGGGCAAT+CGG 0.523894 1_4:-39926253 None:intergenic
TGGAGCGTCTCCAGCCGAAA+CGG 0.524969 1_4:+39927680 Msa0162670:three_prime_UTR
TGTTACAATGGAGAGGGTGG+AGG 0.525866 1_4:+39920258 Msa0162670:CDS
AACTAATTTCATGTTTGGAT+AGG 0.526411 1_4:+39929822 Msa0162670:three_prime_UTR
GCTGAATGTCTTCGCCAACT+AGG 0.528082 1_4:+39926315 Msa0162670:three_prime_UTR
CAATACAGCTCCTTGTGGTA+CGG 0.528718 1_4:+39924305 Msa0162670:three_prime_UTR
AATGAAGGAGGTGGATGAAG+AGG 0.529395 1_4:-39919502 None:intergenic
TTATTTGGAATAAGCAAATG+AGG 0.529682 1_4:+39921542 Msa0162670:CDS
AAGCAGAATCAACCCAATCA+AGG 0.531753 1_4:+39919620 Msa0162670:CDS
TCTATGCTGGAAACCTTGGT+TGG 0.532571 1_4:+39921128 Msa0162670:CDS
GCGGCAGTGGAGAAGTAGGT+CGG 0.532926 1_4:-39926209 None:intergenic
AAAAGCGTTAAAATTTGCAA+TGG 0.533063 1_4:+39926134 Msa0162670:three_prime_UTR
TGTACAGACAGTTGGAGGTA+GGG 0.536228 1_4:+39921012 Msa0162670:intron
TGCGTTTGTTACAATGGAGA+GGG 0.540835 1_4:+39920252 Msa0162670:CDS
AACTGGTATAATGAGCATAT+GGG 0.540901 1_4:+39928777 Msa0162670:three_prime_UTR
TTGTACAGACAGTTGGAGGT+AGG 0.542248 1_4:+39921011 Msa0162670:intron
TTCATCTGCATTTATAAGCA+AGG 0.542858 1_4:+39927767 Msa0162670:three_prime_UTR
TGAATCTTCATTTATATGCA+AGG 0.542894 1_4:+39924362 Msa0162670:three_prime_UTR
ATGCTCAAAACTTCTCTCCA+TGG 0.542946 1_4:+39926453 Msa0162670:three_prime_UTR
TATTGTTACTGAAGGGTCGA+AGG 0.544356 1_4:+39929034 Msa0162670:three_prime_UTR
AATTGAGGGATTAAATTGAA+GGG 0.544760 1_4:-39919472 None:intergenic
GCAGCCTCGTCTGATGGCCA+TGG 0.544803 1_4:-39928751 None:intergenic
AGCTTCTTATTGTTACTGAA+GGG 0.544876 1_4:+39929027 Msa0162670:three_prime_UTR
AAAATATTAAGGTATTGGGT+GGG 0.546449 1_4:+39927055 Msa0162670:three_prime_UTR
GAAAATATTAAGGTATTGGG+TGG 0.547701 1_4:+39927054 Msa0162670:three_prime_UTR
TTAAAGGCACCTTCTTGATG+AGG 0.548253 1_4:-39928511 None:intergenic
CTTCAAGTTTGTGCGCCTCG+TGG 0.548505 1_4:+39926861 Msa0162670:three_prime_UTR
ATGAAGGAGGTGGATGAAGA+GGG 0.548537 1_4:-39919501 None:intergenic
ATGTGTAACAAAAGCTAATG+TGG 0.552274 1_4:-39925010 None:intergenic
TCTAATTGTTACTGAAGGGT+CGG 0.554024 1_4:+39925632 Msa0162670:three_prime_UTR
AGTTGGCATCTCTAAGTTGG+GGG 0.556296 1_4:+39927743 Msa0162670:three_prime_UTR
TCCTCATGGAATGAAAATGA+AGG 0.556417 1_4:-39919517 None:intergenic
ACCAGTGCTTGCACTAGCCA+TGG 0.557085 1_4:-39919341 None:intergenic
AGCTTCTAATTGTTACTGAA+GGG 0.558772 1_4:+39925628 Msa0162670:three_prime_UTR
TGTCTCTTTCGAAACTGCTG+AGG 0.563295 1_4:+39921258 Msa0162670:CDS
TGGCTCGTCAATCAAACTGA+TGG 0.563370 1_4:-39925244 None:intergenic
TGGCTCGTCAATCAAACTGA+TGG 0.563370 1_4:-39928644 None:intergenic
CGAAACTGCTGAGGATGTAG+AGG 0.566347 1_4:+39921267 Msa0162670:CDS
GTGGAGAAGTAGGTCGGGAG+TGG 0.566817 1_4:-39926203 None:intergenic
AGATGAATTTGGGTATATGA+TGG 0.568329 1_4:+39924924 Msa0162670:three_prime_UTR
TTCCCAGAAGTGCCCAAAGT+AGG 0.569809 1_4:+39921049 Msa0162670:CDS
TTGTTGTTGCTGTTCTGTGT+GGG 0.570534 1_4:-39919435 None:intergenic
ACAGCCAAATTCAGTCGTAA+AGG 0.572484 1_4:-39921446 None:intergenic
ACCCGAGTTTGAAAAGGTGA+TGG 0.572816 1_4:-39926269 None:intergenic
CAAGGAGCTGTATTGAAAGC+AGG 0.573333 1_4:-39924297 None:intergenic
TGATCATAACCTCATCAAGC+AGG 0.573362 1_4:+39925107 Msa0162670:three_prime_UTR
TGGAATGAAAATGAAGGAGG+TGG 0.573591 1_4:-39919511 None:intergenic
GGTGTCAATGTTAAACCTGT+TGG 0.574637 1_4:+39925931 Msa0162670:three_prime_UTR
AGTGCCCAAAGTAGGCAAAA+GGG 0.576216 1_4:+39921057 Msa0162670:CDS
AGTTGGCATCTCTAAGTTGG+GGG 0.577772 1_4:+39924338 Msa0162670:three_prime_UTR
CGTGATCACGCCACATACAA+TGG 0.578228 1_4:-39929549 None:intergenic
AACAAATGCATCACCAACAC+CGG 0.579119 1_4:-39925959 None:intergenic
ATTGTACATCAATCAAAGAA+GGG 0.579787 1_4:+39929891 Msa0162670:three_prime_UTR
GAGTGACTAACCTTCTGACT+TGG 0.580249 1_4:+39929700 Msa0162670:three_prime_UTR
AAAGGCTTCTCTAAGATCCT+GGG 0.581121 1_4:-39921161 None:intergenic
CTCCAACAAAACAAGCGGAC+TGG 0.581954 1_4:+39927611 Msa0162670:three_prime_UTR
GTTTGGTTTGAAGGCAGACA+AGG 0.583084 1_4:+39926290 Msa0162670:three_prime_UTR
AATAGATTTCGTGCCAACAG+TGG 0.584476 1_4:+39924251 Msa0162670:intron
TGGTTGGGATATGACTTCCC+AGG 0.584520 1_4:+39921144 Msa0162670:CDS
GTTGTTGTTGCTGTTCTGTG+TGG 0.585304 1_4:-39919436 None:intergenic
GTTGTCCTCTACAAATTCAA+AGG 0.585855 1_4:+39926769 Msa0162670:three_prime_UTR
ATTGTTACTGAAGGGTCGAA+GGG 0.587847 1_4:+39929035 Msa0162670:three_prime_UTR
GATGTTGTACAGACAGTTGG+AGG 0.588100 1_4:+39921007 Msa0162670:intron
TCCTTGTGGTACGGCAAACG+TGG 0.588152 1_4:+39924314 Msa0162670:three_prime_UTR
TTGCGTTTGTTACAATGGAG+AGG 0.591751 1_4:+39920251 Msa0162670:CDS
ACCATGGCTAGTGCAAGCAC+TGG 0.593359 1_4:+39919340 None:intergenic
TTAAAGGCACCTGCTTGATG+AGG 0.594136 1_4:-39925116 None:intergenic
GTTCCTTTCGTAGACGACCC+TGG 0.594290 1_4:-39921209 None:intergenic
TCAGAAGGTTAGTCACTCTA+CGG 0.594701 1_4:-39929695 None:intergenic
ATAGATTTCGTGCCAACAGT+GGG 0.595326 1_4:+39924252 Msa0162670:intron
TGGGAAGTTAAAGGAAATGG+AGG 0.597587 1_4:-39919416 None:intergenic
ATTGATGTACAATCACAAAG+TGG 0.598110 1_4:-39929881 None:intergenic
AGGCACCTTTGAATTTGTAG+AGG 0.598612 1_4:-39926774 None:intergenic
TGATCATAACCTCATCAAGA+AGG 0.598780 1_4:+39928502 Msa0162670:three_prime_UTR
TTTGTAGAGGACAACAGCCA+TGG 0.599212 1_4:-39926761 None:intergenic
ATAAACTGTTTGAACACCAT+CGG 0.599951 1_4:-39926811 None:intergenic
GCTGTCCAGGCAAGCAACCA+AGG 0.601052 1_4:+39927177 Msa0162670:three_prime_UTR
TTTCCAGCATAGATCTTGTG+AGG 0.601847 1_4:-39921118 None:intergenic
TTCTAATGCCAGAACCACGT+TGG 0.603258 1_4:+39928391 Msa0162670:three_prime_UTR
GACATCAAAACCAAGTCAGA+AGG 0.605404 1_4:-39929710 None:intergenic
TTGTATGTGGCGTGATCACG+GGG 0.606303 1_4:+39929552 Msa0162670:three_prime_UTR
GACATCACAAATAGAAGCAG+AGG 0.606453 1_4:+39920226 Msa0162670:CDS
GAATTACCTCGAAAATACTT+GGG 0.606713 1_4:-39926011 None:intergenic
CGAATTTGAGATTGACACCA+TGG 0.607928 1_4:+39928734 Msa0162670:three_prime_UTR
GACACTATGGCCATCAGCCG+AGG 0.608512 1_4:+39925347 Msa0162670:three_prime_UTR
GCCACGTTTGCCGTACCACA+AGG 0.608891 1_4:-39924315 None:intergenic
GCCACGTTTGCGGTACCACA+AGG 0.608891 1_4:-39927720 None:intergenic
GTCTGAGGTTCGAGAACAGG+CGG 0.609132 1_4:-39926228 None:intergenic
TTTGTGTGGCAGGATGAGGA+AGG 0.609237 1_4:+39926105 Msa0162670:intron
GATTTCGTGCCAACAGTGGG+TGG 0.609717 1_4:+39924255 Msa0162670:intron
TGACTAGGATCATCAACCAC+GGG 0.611458 1_4:-39927126 None:intergenic
TGTATTGAAAGCAGGCACTT+CGG 0.611858 1_4:-39924289 None:intergenic
GGTCGAAATCTCTAATGTTG+AGG 0.612639 1_4:+39927002 Msa0162670:intron
CAGGTCGATGAAATTATCCA+TGG 0.613528 1_4:+39926744 Msa0162670:intron
TCCAAAAGCATATCAGCGCT+AGG 0.613915 1_4:-39928467 None:intergenic
CCTGTTGGCACAACCGGTGT+TGG 0.614402 1_4:+39925946 Msa0162670:three_prime_UTR
AACGTTGAGCTACTGTGACT+AGG 0.617081 1_4:-39927141 None:intergenic
AGGAAAAGTTGAAGAGTCTG+TGG 0.620276 1_4:-39919381 None:intergenic
TCCTTGTGGTACCGCAAACG+TGG 0.620522 1_4:+39927719 Msa0162670:three_prime_UTR
ATTGAAACCTGCAATATGAA+GGG 0.620850 1_4:-39926477 None:intergenic
AAATGAATGTGGGTATATGT+TGG 0.621347 1_4:+39928319 Msa0162670:three_prime_UTR
GTTGGCATCTCTAAGTTGGG+GGG 0.621474 1_4:+39927744 Msa0162670:three_prime_UTR
TAAGCCTGATTGCTCAGCAA+AGG 0.625819 1_4:-39921179 None:intergenic
GAAAGCTCCAACAAAACAAG+CGG 0.627040 1_4:+39927606 Msa0162670:three_prime_UTR
AGAGTCTTTAGCGATTCTCA+AGG 0.627558 1_4:-39925289 None:intergenic
AGAGTCTTTAGCGATTCTCA+AGG 0.627558 1_4:-39928689 None:intergenic
TTCCAGCATAGATCTTGTGA+GGG 0.627663 1_4:-39921117 None:intergenic
GTGCCAGGGTCGTCTACGAA+AGG 0.628572 1_4:+39921206 Msa0162670:CDS
GCTTTCAATACAGCTCCTTG+TGG 0.629231 1_4:+39924300 Msa0162670:three_prime_UTR
GAATTACCTCGAAAATACTT+GGG 0.629303 1_4:-39929411 None:intergenic
GGTACGGCAAACGTGGCAGT+TGG 0.629505 1_4:+39924321 Msa0162670:three_prime_UTR
GAAAGAAGTTCTAAAGCCCG+TGG 0.629619 1_4:+39927110 Msa0162670:three_prime_UTR
CCAAATTCAGTCGTAAAGGT+CGG 0.632704 1_4:-39921442 None:intergenic
CCTGCAATATGAAGGGACCA+TGG 0.635323 1_4:-39926470 None:intergenic
AGAGACACTCCACCCACTGT+TGG 0.636184 1_4:-39924264 None:intergenic
TCTAATGTTGAGGTGAGACG+TGG 0.639467 1_4:+39927012 Msa0162670:three_prime_UTR
ATGTGGCGTGATCACGGGGA+CGG 0.639580 1_4:+39929556 Msa0162670:three_prime_UTR
TCTGTGTCATATATCTTATG+GGG 0.639945 1_4:+39929999 Msa0162670:three_prime_UTR
GACACCATGGCCATCAGACG+AGG 0.640375 1_4:+39928747 Msa0162670:three_prime_UTR
TATGATGTTGTACAGACAGT+TGG 0.641337 1_4:+39921004 Msa0162670:intron
GTTTGTTACAATGGAGAGGG+TGG 0.643170 1_4:+39920255 Msa0162670:CDS
ATCAGGCTTACTGAGTGCCA+GGG 0.645982 1_4:+39921192 Msa0162670:CDS
TGAATGTCTTCGCCAACTAG+GGG 0.648187 1_4:+39926317 Msa0162670:three_prime_UTR
GTTGGCATCTCTAAGTTGGG+GGG 0.649597 1_4:+39924339 Msa0162670:three_prime_UTR
GATTGACGAGCCATGCAAGT+CGG 0.649771 1_4:+39925254 Msa0162670:three_prime_UTR
GATTGACGAGCCATGCAAGT+CGG 0.649771 1_4:+39928654 Msa0162670:three_prime_UTR
ACGGGGCAATCGGAAGTCTG+AGG 0.649776 1_4:-39926243 None:intergenic
ACTACCACAAGAATTGAGAT+CGG 0.652965 1_4:-39926403 None:intergenic
GGTACCGCAAACGTGGCAGT+TGG 0.654257 1_4:+39927726 Msa0162670:three_prime_UTR
ACGAGGCGCACAAACTTGAA+GGG 0.656234 1_4:-39926859 None:intergenic
CTGATGTTCAAAATGACCGA+TGG 0.662406 1_4:+39926795 Msa0162670:three_prime_UTR
GGTTTCGTGCCATCAATGGG+TGG 0.666706 1_4:+39927660 Msa0162670:three_prime_UTR
GTTGCTTTGAGTGCTATGAA+CGG 0.670859 1_4:+39921289 Msa0162670:CDS
AAAAGTTGAAGAGTCTGTGG+TGG 0.674091 1_4:-39919378 None:intergenic
GTCGTCTACGAAAGGAACAA+CGG 0.675544 1_4:+39921214 Msa0162670:CDS
ATGTTGATACATCTGGCATG+CGG 0.677431 1_4:+39924968 Msa0162670:three_prime_UTR
ATGTTGATACATCTGGCATG+CGG 0.677431 1_4:+39928363 Msa0162670:three_prime_UTR
GGGAAGTCATATCCCAACCA+AGG 0.679543 1_4:-39921141 None:intergenic
GCTTACAAGAAAGCTCCTTG+TGG 0.682397 1_4:+39927705 Msa0162670:three_prime_UTR
TCATGGAATGAAAATGAAGG+AGG 0.686382 1_4:-39919514 None:intergenic
GTGACTAGGATCATCAACCA+CGG 0.692544 1_4:-39927127 None:intergenic
TGAAAAGGTGATGGTTAACG+GGG 0.702819 1_4:-39926260 None:intergenic
AGGAACAACGGAAAATCTCG+CGG 0.706699 1_4:+39921226 Msa0162670:CDS
TCTGTGGTGGCAGATAGGGA+AGG 0.718022 1_4:-39919365 None:intergenic
TTTGAGTGCTATGAACGGCG+TGG 0.729342 1_4:+39921294 Msa0162670:CDS
AAATGTAATAAAACCCAACG+TGG 0.743732 1_4:-39928405 None:intergenic
GGGTTGTAGATATTACACCA+AGG 0.768244 1_4:+39929055 Msa0162670:three_prime_UTR
AAGTTGTAGATATTACACCA+AGG 0.780493 1_4:+39925656 Msa0162670:three_prime_UTR
GAAGAAACCTTTAATCCACG+AGG 0.804861 1_4:-39926876 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATTATATTATATTT+TGG + chr1_4:39923673-39923692 Msa0162670:intron 0.0%
!!! TATCAATAATTTTTTTTTAG+TGG + chr1_4:39923054-39923073 Msa0162670:intron 10.0%
!!! TTTAAATTTCTTTTGTAAAA+CGG + chr1_4:39923185-39923204 Msa0162670:intron 10.0%
!!! TATATTTCATTTTTTTAACA+AGG + chr1_4:39923387-39923406 Msa0162670:intron 10.0%
!!! ATTATATTAGATTAGAATTT+TGG + chr1_4:39923572-39923591 Msa0162670:intron 10.0%
!! TTAAAGTAAAATATTCAAAA+AGG - chr1_4:39923636-39923655 None:intergenic 10.0%
!!! ATATTTTCTTCAAAAAAAAA+AGG + chr1_4:39924020-39924039 Msa0162670:intron 10.0%
!! TTAATTTAACAATAAGAAAA+GGG - chr1_4:39924742-39924761 None:intergenic 10.0%
!!! TTTAATTTAACAATAAGAAA+AGG - chr1_4:39924743-39924762 None:intergenic 10.0%
!! ATTCATAATATATATTCTTA+AGG + chr1_4:39926656-39926675 Msa0162670:intron 10.0%
!! TTAATTTATCAATAAGAAAT+GGG - chr1_4:39928138-39928157 None:intergenic 10.0%
!!! TTTAATTTATCAATAAGAAA+TGG - chr1_4:39928139-39928158 None:intergenic 10.0%
!!! ATTAAAATTTTGCAATTTGA+GGG - chr1_4:39919846-39919865 None:intergenic 15.0%
!!! ATTTAAGATATTTTTGGTTT+TGG + chr1_4:39920137-39920156 Msa0162670:intron 15.0%
!!! TTTAAGATATTTTTGGTTTT+GGG + chr1_4:39920138-39920157 Msa0162670:intron 15.0%
!! TAAGTCAAATAAAACAAAAT+TGG - chr1_4:39920187-39920206 None:intergenic 15.0%
!!! TGTTGATTACATTTTAAATA+TGG + chr1_4:39920328-39920347 Msa0162670:intron 15.0%
!! AACTAAATAATTAATAAACC+AGG - chr1_4:39920460-39920479 None:intergenic 15.0%
!!! ATTATTTAGTTTTGTAATGA+TGG + chr1_4:39921668-39921687 Msa0162670:intron 15.0%
!! ATATAACAATGATAAGTTTA+TGG + chr1_4:39922542-39922561 Msa0162670:intron 15.0%
!!! TTTTTTTTTGGTTACAAAAA+AGG + chr1_4:39922824-39922843 Msa0162670:intron 15.0%
!!! TTTTTTTTGGTTACAAAAAA+GGG + chr1_4:39922825-39922844 Msa0162670:intron 15.0%
!! TATTAATTACACTTAATATG+TGG + chr1_4:39922890-39922909 Msa0162670:intron 15.0%
!! ATTAATTACACTTAATATGT+GGG + chr1_4:39922891-39922910 Msa0162670:intron 15.0%
!!! TGAGTTTATTCTTTTAAATT+GGG - chr1_4:39923247-39923266 None:intergenic 15.0%
!!! ATGAGTTTATTCTTTTAAAT+TGG - chr1_4:39923248-39923267 None:intergenic 15.0%
!!! TGTGTATATTTTTATTTGAA+GGG - chr1_4:39923360-39923379 None:intergenic 15.0%
!! AAATAAAAAAAAAAACCACT+TGG + chr1_4:39923448-39923467 Msa0162670:intron 15.0%
!! TTTAATTAAAACTTTGATCA+TGG - chr1_4:39923533-39923552 None:intergenic 15.0%
!! TTCTAATCTAATATAATTCA+AGG - chr1_4:39923569-39923588 None:intergenic 15.0%
!! GTTATAAACATATAACTTAA+AGG - chr1_4:39923717-39923736 None:intergenic 15.0%
!! TAATTTAACAATAAGAAAAG+GGG - chr1_4:39924741-39924760 None:intergenic 15.0%
!!! ATTATTTTGCTTTAAACTAT+CGG - chr1_4:39924950-39924969 None:intergenic 15.0%
!! AAAATTTACCTTTATTACAT+CGG - chr1_4:39925409-39925428 None:intergenic 15.0%
!!! ATAGGTCTTTTTTTTTTTTT+GGG - chr1_4:39928562-39928581 None:intergenic 15.0%
!! ATGATAAAAACTGAAAAGAA+TGG - chr1_4:39919744-39919763 None:intergenic 20.0%
!!! GATTAAAATTTTGCAATTTG+AGG - chr1_4:39919847-39919866 None:intergenic 20.0%
!!! TATTTTCGAATATTGATATG+TGG + chr1_4:39920054-39920073 Msa0162670:intron 20.0%
!!! ATTTTCGAATATTGATATGT+GGG + chr1_4:39920055-39920074 Msa0162670:intron 20.0%
!! TCTTAGATTAGTATATAGTA+TGG + chr1_4:39920501-39920520 Msa0162670:intron 20.0%
!! TATTCTATTATAGATGAAGA+TGG + chr1_4:39920537-39920556 Msa0162670:intron 20.0%
!!! TTCTTGTCTTATTATCATTT+TGG + chr1_4:39920631-39920650 Msa0162670:intron 20.0%
!!! TCTTGTCTTATTATCATTTT+GGG + chr1_4:39920632-39920651 Msa0162670:intron 20.0%
!!! TATCATTTTGGGTATAAATT+AGG + chr1_4:39920643-39920662 Msa0162670:intron 20.0%
!!! AATAAGTTGAAATCATCTTA+TGG + chr1_4:39920790-39920809 Msa0162670:intron 20.0%
!! ACTTATTAAAACTTATCAAC+TGG - chr1_4:39920824-39920843 None:intergenic 20.0%
!! CTTAAATCAAGAAAAGATAT+AGG - chr1_4:39920882-39920901 None:intergenic 20.0%
!! AAAATTTGCACAACTAATAA+TGG - chr1_4:39921340-39921359 None:intergenic 20.0%
!! CTACATCATATTATAGAATT+GGG - chr1_4:39921865-39921884 None:intergenic 20.0%
!! TCTACATCATATTATAGAAT+TGG - chr1_4:39921866-39921885 None:intergenic 20.0%
!! AGATAATAGAGATTCATTTA+AGG + chr1_4:39921992-39922011 Msa0162670:intron 20.0%
!! GATAATAGAGATTCATTTAA+GGG + chr1_4:39921993-39922012 Msa0162670:intron 20.0%
!! AATGGTTGAAAATTTGAAAA+GGG - chr1_4:39922357-39922376 None:intergenic 20.0%
!!! AAAGTGTTATATGGTATAAA+CGG - chr1_4:39922501-39922520 None:intergenic 20.0%
!!! TTATACCATATAACACTTTT+AGG + chr1_4:39922502-39922521 Msa0162670:intron 20.0%
!! ACTTATCATTGTTATATTAC+AGG - chr1_4:39922539-39922558 None:intergenic 20.0%
!! CAATTGATTGAAATTTAAGT+GGG - chr1_4:39922777-39922796 None:intergenic 20.0%
!! ACAATTGATTGAAATTTAAG+TGG - chr1_4:39922778-39922797 None:intergenic 20.0%
!!! AGGGTGTTTTTTTTTTTTTT+TGG + chr1_4:39922812-39922831 Msa0162670:intron 20.0%
!!! GAGTTTATTCTTTTAAATTG+GGG - chr1_4:39923246-39923265 None:intergenic 20.0%
!!! GTGTGTATATTTTTATTTGA+AGG - chr1_4:39923361-39923380 None:intergenic 20.0%
!!! TTTCATTTTTTTAACAAGGA+TGG + chr1_4:39923391-39923410 Msa0162670:intron 20.0%
!! TGTAAGAAAAAACAACTTAA+AGG - chr1_4:39923776-39923795 None:intergenic 20.0%
!!! AGTTGTTTTTTCTTACAAAT+TGG + chr1_4:39923779-39923798 Msa0162670:intron 20.0%
!!! ACGGGTTAAAAATTATTTAT+TGG - chr1_4:39923978-39923997 None:intergenic 20.0%
!!! TTTTTTAGATGGAATTTGTT+AGG + chr1_4:39924079-39924098 Msa0162670:intron 20.0%
!! AGTAAATACATGATATTTCT+AGG - chr1_4:39924783-39924802 None:intergenic 20.0%
!!! TTACAAGAAGTATTATTCTT+AGG - chr1_4:39924817-39924836 None:intergenic 20.0%
!! AGAAAATAATGAAATGACTT+TGG - chr1_4:39925690-39925709 None:intergenic 20.0%
!! CAATCAATTAATTAACTGAA+TGG - chr1_4:39926515-39926534 None:intergenic 20.0%
!! ATATATGTATTCAGATGAAA+AGG - chr1_4:39926917-39926936 None:intergenic 20.0%
!! TAATACAGTATAGAACATTA+TGG - chr1_4:39927381-39927400 None:intergenic 20.0%
!! CTAATTAGCATAACTTAATA+AGG + chr1_4:39927456-39927475 Msa0162670:intron 20.0%
!! AAAAATAATGTTGATACATC+TGG + chr1_4:39928356-39928375 Msa0162670:three_prime_UTR 20.0%
!!! CATAGGTCTTTTTTTTTTTT+TGG - chr1_4:39928563-39928582 None:intergenic 20.0%
!! CAAAAAAAAAAAAAGACCTA+TGG + chr1_4:39928561-39928580 Msa0162670:intron 20.0%
!!! TTTAATTTAATACTGATTGC+AGG + chr1_4:39928600-39928619 Msa0162670:intron 20.0%
!! TTGTAAAGTGTATTGTATAA+AGG - chr1_4:39928849-39928868 None:intergenic 20.0%
!! AGAAAATAATGAAATGACTT+TGG - chr1_4:39925690-39925709 None:intergenic 20.0%
! AATTGAGGGATTAAATTGAA+GGG - chr1_4:39919475-39919494 None:intergenic 25.0%
! TAATTGAGGGATTAAATTGA+AGG - chr1_4:39919476-39919495 None:intergenic 25.0%
! TAAAAACTGAAAAGAATGGA+AGG - chr1_4:39919740-39919759 None:intergenic 25.0%
! CATTGTTTGTTTCATATATG+AGG + chr1_4:39919761-39919780 Msa0162670:intron 25.0%
!! TCAATTTAGTTCATACTTGT+AGG + chr1_4:39919865-39919884 Msa0162670:intron 25.0%
!! CATTTTTATCAACATTGACA+TGG + chr1_4:39919971-39919990 Msa0162670:intron 25.0%
! ACATTTAGACCATAATGATT+TGG + chr1_4:39920560-39920579 Msa0162670:intron 25.0%
! GCTTAGTTGAAAATTAGTTA+GGG + chr1_4:39920595-39920614 Msa0162670:intron 25.0%
! ATAAGCTATTTATCCAAACA+GGG - chr1_4:39920669-39920688 None:intergenic 25.0%
! AATAAGCTATTTATCCAAAC+AGG - chr1_4:39920670-39920689 None:intergenic 25.0%
! AAACAGACCAATAAATCATT+TGG + chr1_4:39920850-39920869 Msa0162670:intron 25.0%
! AACAGACCAATAAATCATTT+GGG + chr1_4:39920851-39920870 Msa0162670:intron 25.0%
! TAGAGTTGCAATTTACAATT+TGG - chr1_4:39920933-39920952 None:intergenic 25.0%
!!! TGTATAATGTACTGTTTTTC+AGG + chr1_4:39921409-39921428 Msa0162670:intron 25.0%
!!! CCTTTATTTTGATCAATTAC+CGG - chr1_4:39921497-39921516 None:intergenic 25.0%
!! TTATTTGGAATAAGCAAATG+AGG + chr1_4:39921542-39921561 Msa0162670:CDS 25.0%
! TAATATCGTTAATTGCTAGT+AGG + chr1_4:39922018-39922037 Msa0162670:intron 25.0%
! GATGTAACTTAAAATTCACA+AGG - chr1_4:39922310-39922329 None:intergenic 25.0%
! TGAAAATTTGAAAAGGGATA+AGG - chr1_4:39922351-39922370 None:intergenic 25.0%
! CAATGGTTGAAAATTTGAAA+AGG - chr1_4:39922358-39922377 None:intergenic 25.0%
! TATAAATATGAAAAGGGCAA+TGG - chr1_4:39922375-39922394 None:intergenic 25.0%
! ATGAAATAGAATGACAATGT+TGG - chr1_4:39922469-39922488 None:intergenic 25.0%
! CAATGATAAGTTTATGGAAT+TGG + chr1_4:39922548-39922567 Msa0162670:intron 25.0%
! AGAAATGATGTTAAAAACGA+AGG - chr1_4:39922624-39922643 None:intergenic 25.0%
!!! AGATTAGAATTTTGGAAATC+AGG + chr1_4:39923580-39923599 Msa0162670:intron 25.0%
!! TTGGTAACAAAGAAACTTAA+AGG - chr1_4:39923748-39923767 None:intergenic 25.0%
! TAAGTTTCTTTGTTACCAAT+TGG + chr1_4:39923749-39923768 Msa0162670:intron 25.0%
!!! TGCAATGCATTTTTTTTAGA+TGG + chr1_4:39924068-39924087 Msa0162670:intron 25.0%
! TGAATCTTCATTTATATGCA+AGG + chr1_4:39924362-39924381 Msa0162670:three_prime_UTR 25.0%
! TCTATGTCTATTTATTCACA+TGG + chr1_4:39924391-39924410 Msa0162670:intron 25.0%
! AAGATTTGAAGAATCAAACA+TGG - chr1_4:39924447-39924466 None:intergenic 25.0%
! TTAAGAAATCTGTAATGTGT+TGG + chr1_4:39924472-39924491 Msa0162670:intron 25.0%
! TAAGAAATCTGTAATGTGTT+GGG + chr1_4:39924473-39924492 Msa0162670:intron 25.0%
!! ATTGATTACACTTTTCTGAA+TGG + chr1_4:39924504-39924523 Msa0162670:intron 25.0%
! ATGGGAACGAAAAATAAATA+GGG - chr1_4:39924652-39924671 None:intergenic 25.0%
! TTGAAATGAGAAGTTATAGT+TGG - chr1_4:39924701-39924720 None:intergenic 25.0%
! TTATGAATGTGAATCTATGT+TGG + chr1_4:39924851-39924870 Msa0162670:intron 25.0%
! CAAAATAATGTTGATACATC+TGG + chr1_4:39924961-39924980 Msa0162670:three_prime_UTR 25.0%
! TAAACACAGATGGAAATTAA+AGG - chr1_4:39925135-39925154 None:intergenic 25.0%
! CTTAAAACCATATGTCTTTA+TGG - chr1_4:39925168-39925187 None:intergenic 25.0%
!! TAATTTAATACGGATTTTGC+AGG + chr1_4:39925200-39925219 Msa0162670:intron 25.0%
! AAATGGTATAATGAGCATTT+GGG + chr1_4:39925377-39925396 Msa0162670:three_prime_UTR 25.0%
!! TGATTACTAAATTTTTGTGC+AGG + chr1_4:39925888-39925907 Msa0162670:intron 25.0%
!! AATTTTTGTGCAGGATTTTA+AGG + chr1_4:39925897-39925916 Msa0162670:intron 25.0%
!! ATTTTTGTGCAGGATTTTAA+GGG + chr1_4:39925898-39925917 Msa0162670:intron 25.0%
!!! TTGCAAATTTTAACGCTTTT+TGG - chr1_4:39926134-39926153 None:intergenic 25.0%
!!! AAAAGCGTTAAAATTTGCAA+TGG + chr1_4:39926134-39926153 Msa0162670:three_prime_UTR 25.0%
!! AAAGCGTTAAAATTTGCAAT+GGG + chr1_4:39926135-39926154 Msa0162670:three_prime_UTR 25.0%
!!! AGTGATTGCAATGTTTTTTT+TGG - chr1_4:39926175-39926194 None:intergenic 25.0%
!!! AGCATTTTTTCATCAATATG+AGG - chr1_4:39926438-39926457 None:intergenic 25.0%
!!! TTTTTTTTGAATTTGCTCCA+TGG + chr1_4:39926598-39926617 Msa0162670:intron 25.0%
! TAAATTATGCTCCTATATGA+TGG + chr1_4:39926691-39926710 Msa0162670:intron 25.0%
! TCCTGAAAATATTAAGGTAT+TGG + chr1_4:39927050-39927069 Msa0162670:three_prime_UTR 25.0%
!! CCTGAAAATATTAAGGTATT+GGG + chr1_4:39927051-39927070 Msa0162670:three_prime_UTR 25.0%
!!! AAAATATTAAGGTATTGGGT+GGG + chr1_4:39927055-39927074 Msa0162670:three_prime_UTR 25.0%
!! GTAATCTAATCTAGAACATA+AGG - chr1_4:39927208-39927227 None:intergenic 25.0%
! AATAGAAGAATCCTTTCATA+CGG - chr1_4:39927431-39927450 None:intergenic 25.0%
!! AACTTAATAAGGATGTTTTG+TGG + chr1_4:39927467-39927486 Msa0162670:intron 25.0%
!!! TGTTTTGGTGAAATGTTAAT+AGG + chr1_4:39924234-39924253 Msa0162670:intron 25.0%
! GTGCATCTATATCTATTTAT+TGG + chr1_4:39927791-39927810 Msa0162670:intron 25.0%
! TCTATATCTATTTATTGGCA+TGG + chr1_4:39927796-39927815 Msa0162670:intron 25.0%
! TATTTATTGGCATGGTTATT+TGG + chr1_4:39927804-39927823 Msa0162670:intron 25.0%
! AGATTTGAACAAATCAAACA+TGG - chr1_4:39927855-39927874 None:intergenic 25.0%
! TTAAGAAATCTGTAATGTGT+TGG + chr1_4:39924472-39924491 Msa0162670:intron 25.0%
! TAAGAAATCTGTAATGTGTT+GGG + chr1_4:39924473-39924492 Msa0162670:intron 25.0%
!! ATTGATTACACTTTTCTGAA+TGG + chr1_4:39924504-39924523 Msa0162670:intron 25.0%
! TAAAGTGGTTTCTATTCAAT+GGG - chr1_4:39928067-39928086 None:intergenic 25.0%
! TTAAAGTGGTTTCTATTCAA+TGG - chr1_4:39928068-39928087 None:intergenic 25.0%
! AAGTAAATCATGATATCTCT+AGG - chr1_4:39928179-39928198 None:intergenic 25.0%
!!! TTACAAGAAGTACTATTCTT+CGG - chr1_4:39928212-39928231 None:intergenic 25.0%
!! GTAATAGTATTCTGCATTTT+AGG + chr1_4:39928228-39928247 Msa0162670:intron 25.0%
! TAAACAGAGATGGAAATTAA+AGG - chr1_4:39928530-39928549 None:intergenic 25.0%
!! GTACATTTTATAAACAGAGA+TGG - chr1_4:39928540-39928559 None:intergenic 25.0%
! TAAGAAAATAACACTTCAGA+TGG - chr1_4:39925507-39925526 None:intergenic 25.0%
!!! GATGAGATTACTTTTTTGAT+TGG + chr1_4:39928945-39928964 Msa0162670:three_prime_UTR 25.0%
! AATACAACATCATCATCATA+AGG - chr1_4:39928981-39929000 None:intergenic 25.0%
! AAAAAAAAGTTGTGAGTGTT+TGG + chr1_4:39929465-39929484 Msa0162670:intron 25.0%
!!! TTTGATGAAGTTATTTTGTG+TGG + chr1_4:39929489-39929508 Msa0162670:intron 25.0%
!! TGAAATTAGTTTCTTCACAT+TGG - chr1_4:39929813-39929832 None:intergenic 25.0%
! GAAGAAACTAATTTCATGTT+TGG + chr1_4:39929817-39929836 Msa0162670:three_prime_UTR 25.0%
! AACTAATTTCATGTTTGGAT+AGG + chr1_4:39929822-39929841 Msa0162670:three_prime_UTR 25.0%
! ATTGTACATCAATCAAAGAA+GGG + chr1_4:39929891-39929910 Msa0162670:three_prime_UTR 25.0%
! AATCTGTGTCATATATCTTA+TGG + chr1_4:39929997-39930016 Msa0162670:three_prime_UTR 25.0%
! ATCTGTGTCATATATCTTAT+GGG + chr1_4:39929998-39930017 Msa0162670:three_prime_UTR 25.0%
!! ATTGAAGGGTTTTGTAGAAA+TGG - chr1_4:39919461-39919480 None:intergenic 30.0%
TGGGAAGAAGATAATGAAAA+TGG - chr1_4:39919667-39919686 None:intergenic 30.0%
TTCATTATCTTCTTCCCAAT+TGG + chr1_4:39919669-39919688 Msa0162670:intron 30.0%
! TTTAGTTCCTCATTCCAAAA+TGG + chr1_4:39919819-39919838 Msa0162670:intron 30.0%
TTAGTTCATACTTGTAGGAT+TGG + chr1_4:39919870-39919889 Msa0162670:intron 30.0%
GATAAAACCCTACAATTTCA+AGG + chr1_4:39920087-39920106 Msa0162670:intron 30.0%
AGTTTGTCCTTGAAATTGTA+GGG - chr1_4:39920097-39920116 None:intergenic 30.0%
AAGTTTGTCCTTGAAATTGT+AGG - chr1_4:39920098-39920117 None:intergenic 30.0%
GAATCAATTCGAATGTTTGA+TGG + chr1_4:39920289-39920308 Msa0162670:CDS 30.0%
GATTAAGCACCAAATCATTA+TGG - chr1_4:39920572-39920591 None:intergenic 30.0%
!! AATGATTTGGTGCTTAATCA+AGG + chr1_4:39920573-39920592 Msa0162670:intron 30.0%
GGCTTAGTTGAAAATTAGTT+AGG + chr1_4:39920594-39920613 Msa0162670:intron 30.0%
AAGACAAGAAAACAAGATAC+TGG - chr1_4:39920621-39920640 None:intergenic 30.0%
GTATCTCCCAAATGATTTAT+TGG - chr1_4:39920860-39920879 None:intergenic 30.0%
!! ATCTTATTCAACTAGCTTTC+TGG + chr1_4:39920906-39920925 Msa0162670:intron 30.0%
GAGTTCAATTCTAATGGTAA+TGG + chr1_4:39920980-39920999 Msa0162670:intron 30.0%
!!! ATAATGTACTGTTTTTCAGG+AGG + chr1_4:39921412-39921431 Msa0162670:intron 30.0%
!!! TTATTTTGATCAATTACCGG+AGG - chr1_4:39921494-39921513 None:intergenic 30.0%
CCGGTAATTGATCAAAATAA+AGG + chr1_4:39921494-39921513 Msa0162670:CDS 30.0%
!! AGGAAATAATGTTGATAGCT+TGG + chr1_4:39921514-39921533 Msa0162670:CDS 30.0%
GATAGCTTGGAAATGTTATT+TGG + chr1_4:39921527-39921546 Msa0162670:CDS 30.0%
GACAGAAAAATATGACATGA+GGG - chr1_4:39921603-39921622 None:intergenic 30.0%
TGACAGAAAAATATGACATG+AGG - chr1_4:39921604-39921623 None:intergenic 30.0%
CTGTCAATTACTAATCATGT+TGG + chr1_4:39921618-39921637 Msa0162670:intron 30.0%
GTAACATACCGATCTATAAT+CGG + chr1_4:39921788-39921807 Msa0162670:intron 30.0%
!! CTGCATTCATTACTTTTCAA+AGG - chr1_4:39921893-39921912 None:intergenic 30.0%
TACAGTCTTTCATTAAGCAA+TGG + chr1_4:39921952-39921971 Msa0162670:intron 30.0%
TAGCAAACAATTTCCATGTA+AGG + chr1_4:39922191-39922210 Msa0162670:intron 30.0%
AATTTCCATGTAAGGACAAA+AGG + chr1_4:39922199-39922218 Msa0162670:intron 30.0%
ATTTCCATGTAAGGACAAAA+GGG + chr1_4:39922200-39922219 Msa0162670:intron 30.0%
TTGTCAAGAAAGTAATCTAG+AGG + chr1_4:39922244-39922263 Msa0162670:intron 30.0%
! AAGGATACTTTTGTCTAACA+GGG - chr1_4:39922332-39922351 None:intergenic 30.0%
! TAAGGATACTTTTGTCTAAC+AGG - chr1_4:39922333-39922352 None:intergenic 30.0%
AGATGATTAAGAAAGAGAAG+AGG - chr1_4:39922406-39922425 None:intergenic 30.0%
!! CCAAACCTAAAAGTGTTATA+TGG - chr1_4:39922510-39922529 None:intergenic 30.0%
!!! CCATATAACACTTTTAGGTT+TGG + chr1_4:39922507-39922526 Msa0162670:intron 30.0%
! ATAAGGATCTTCTACCTTTT+GGG - chr1_4:39922693-39922712 None:intergenic 30.0%
TATTCATTGGACCAATTCAT+AGG - chr1_4:39922720-39922739 None:intergenic 30.0%
ATTGGTCCAATGAATATATG+TGG + chr1_4:39922724-39922743 Msa0162670:intron 30.0%
TTGGTCCAATGAATATATGT+GGG + chr1_4:39922725-39922744 Msa0162670:intron 30.0%
!! AATTGTAGAGAGTGTCAAAA+AGG + chr1_4:39922792-39922811 Msa0162670:intron 30.0%
!! ATTGTAGAGAGTGTCAAAAA+GGG + chr1_4:39922793-39922812 Msa0162670:intron 30.0%
AAACTAACATGCATATTGCT+AGG + chr1_4:39922932-39922951 Msa0162670:intron 30.0%
AACTAACATGCATATTGCTA+GGG + chr1_4:39922933-39922952 Msa0162670:intron 30.0%
! TTCTTTTAAATTGGGGAAAG+AGG - chr1_4:39923239-39923258 None:intergenic 30.0%
AAACAACTTAAAGGACCAAT+TGG - chr1_4:39923767-39923786 None:intergenic 30.0%
!! AAGCACTTTTTAACGAAGTT+GGG - chr1_4:39923848-39923867 None:intergenic 30.0%
!! TAAGCACTTTTTAACGAAGT+TGG - chr1_4:39923849-39923868 None:intergenic 30.0%
TAGACCGTTTAACATTAAGA+TGG + chr1_4:39923869-39923888 Msa0162670:intron 30.0%
CCTACCATCTTAATGTTAAA+CGG - chr1_4:39923876-39923895 None:intergenic 30.0%
! TTTGATGTCATAAGCTCTTT+TGG - chr1_4:39923900-39923919 None:intergenic 30.0%
TACCATATCAATGATCTTAC+GGG - chr1_4:39923996-39924015 None:intergenic 30.0%
CTACCATATCAATGATCTTA+CGG - chr1_4:39923997-39924016 None:intergenic 30.0%
CTTCAAAAAAAAAAGGCAAG+CGG + chr1_4:39924027-39924046 Msa0162670:intron 30.0%
AACCTAATAAAGCAAATGAG+CGG + chr1_4:39924115-39924134 Msa0162670:intron 30.0%
CTTGTTACTATCTAATCTAC+AGG + chr1_4:39924417-39924436 Msa0162670:intron 30.0%
TATGTGTGTGTTTCAATTCA+AGG + chr1_4:39924527-39924546 Msa0162670:intron 30.0%
GAATGTAACATTGTCATGTT+TGG + chr1_4:39924583-39924602 Msa0162670:intron 30.0%
GATGGGAACGAAAAATAAAT+AGG - chr1_4:39924653-39924672 None:intergenic 30.0%
TAAAGTGGTGTCTATTTGAT+GGG - chr1_4:39924670-39924689 None:intergenic 30.0%
TTAAAGTGGTGTCTATTTGA+TGG - chr1_4:39924671-39924690 None:intergenic 30.0%
!!! TAGTTGGTTAGGTTTTAAAG+TGG - chr1_4:39924685-39924704 None:intergenic 30.0%
ATGAGAAGTTATAGTTGGTT+AGG - chr1_4:39924696-39924715 None:intergenic 30.0%
ACAATAAGAAAAGGGGAAAA+AGG - chr1_4:39924734-39924753 None:intergenic 30.0%
AGATGAATTTGGGTATATGA+TGG + chr1_4:39924924-39924943 Msa0162670:three_prime_UTR 30.0%
ATGTGTAACAAAAGCTAATG+TGG - chr1_4:39925013-39925032 None:intergenic 30.0%
TTTGTTACACATAGAGCTAA+TGG + chr1_4:39925021-39925040 Msa0162670:three_prime_UTR 30.0%
! GCATATCAGATTTAGGATTT+CGG - chr1_4:39925068-39925087 None:intergenic 30.0%
! CCACATTTTATAAACACAGA+TGG - chr1_4:39925145-39925164 None:intergenic 30.0%
CCATCTGTGTTTATAAAATG+TGG + chr1_4:39925142-39925161 Msa0162670:intron 30.0%
!! GGAACCATAATGGAATATTT+TGG - chr1_4:39925226-39925245 None:intergenic 30.0%
CATAGTGTCAATCTCAAATT+CGG - chr1_4:39925336-39925355 None:intergenic 30.0%
GAAATGGTATAATGAGCATT+TGG + chr1_4:39925376-39925395 Msa0162670:three_prime_UTR 30.0%
!!! GATGAGATTACTTTTTTGAC+TGG + chr1_4:39925546-39925565 Msa0162670:three_prime_UTR 30.0%
AATACAACATCGTCATCATA+AGG - chr1_4:39925582-39925601 None:intergenic 30.0%
CAATTAGAAGCTTGAGATTA+GGG - chr1_4:39925620-39925639 None:intergenic 30.0%
ACAATTAGAAGCTTGAGATT+AGG - chr1_4:39925621-39925640 None:intergenic 30.0%
AAGCTTCTAATTGTTACTGA+AGG + chr1_4:39925627-39925646 Msa0162670:three_prime_UTR 30.0%
AGCTTCTAATTGTTACTGAA+GGG + chr1_4:39925628-39925647 Msa0162670:three_prime_UTR 30.0%
AAGTTGTAGATATTACACCA+AGG + chr1_4:39925656-39925675 Msa0162670:three_prime_UTR 30.0%
GAATTACCTCGAAAATACTT+GGG - chr1_4:39926014-39926033 None:intergenic 30.0%
TGAATTACCTCGAAAATACT+TGG - chr1_4:39926015-39926034 None:intergenic 30.0%
!! GTTGATGAAGTTATTTTGTG+TGG + chr1_4:39926091-39926110 Msa0162670:intron 30.0%
! TTTGAAAAGGTGATGGTTAA+CGG - chr1_4:39926265-39926284 None:intergenic 30.0%
ATTGAAACCTGCAATATGAA+GGG - chr1_4:39926480-39926499 None:intergenic 30.0%
AATTGAAACCTGCAATATGA+AGG - chr1_4:39926481-39926500 None:intergenic 30.0%
TACAACTGTTTGTTTAAGAG+TGG + chr1_4:39926626-39926645 Msa0162670:intron 30.0%
ATAAACTGTTTGAACACCAT+CGG - chr1_4:39926814-39926833 None:intergenic 30.0%
! TCTGGTTCCTGAAAATATTA+AGG + chr1_4:39927044-39927063 Msa0162670:three_prime_UTR 30.0%
! CCCAATACCTTAATATTTTC+AGG - chr1_4:39927054-39927073 None:intergenic 30.0%
!! GAAAATATTAAGGTATTGGG+TGG + chr1_4:39927054-39927073 Msa0162670:three_prime_UTR 30.0%
!! AAATATTAAGGTATTGGGTG+GGG + chr1_4:39927056-39927075 Msa0162670:three_prime_UTR 30.0%
! AGATTGATTGGTTACATCAT+AGG - chr1_4:39927262-39927281 None:intergenic 30.0%
GCAAGAATACTAAGATTGAT+TGG - chr1_4:39927274-39927293 None:intergenic 30.0%
CTCTTTATGTATGTGTTTCA+CGG + chr1_4:39927309-39927328 Msa0162670:intron 30.0%
ATAGAAGAATCCTTTCATAC+GGG - chr1_4:39927430-39927449 None:intergenic 30.0%
!! GTTGGTTCAAATTCTTTTAC+TGG - chr1_4:39927547-39927566 None:intergenic 30.0%
TTCATCTGCATTTATAAGCA+AGG + chr1_4:39927767-39927786 Msa0162670:three_prime_UTR 30.0%
GAATGTAACATTGTCATGTT+TGG + chr1_4:39924583-39924602 Msa0162670:intron 30.0%
ATCAATAAGAAATGGGAGAA+GGG - chr1_4:39928131-39928150 None:intergenic 30.0%
TATCAATAAGAAATGGGAGA+AGG - chr1_4:39928132-39928151 None:intergenic 30.0%
TTAGGAATGTGAATCTATGT+TGG + chr1_4:39928246-39928265 Msa0162670:intron 30.0%
AACCTAAAACACAAATGGTA+AGG - chr1_4:39928294-39928313 None:intergenic 30.0%
!! TTACCATTTGTGTTTTAGGT+TGG + chr1_4:39928293-39928312 Msa0162670:intron 30.0%
AAATGAATGTGGGTATATGT+TGG + chr1_4:39928319-39928338 Msa0162670:three_prime_UTR 30.0%
AAATGTAATAAAACCCAACG+TGG - chr1_4:39928408-39928427 None:intergenic 30.0%
!!! ACGTTGGGTTTTATTACATT+TGG + chr1_4:39928407-39928426 Msa0162670:three_prime_UTR 30.0%
ATTATACAGACTTAGACCAT+AGG - chr1_4:39928580-39928599 None:intergenic 30.0%
!! GGAACCATAATGGAATATTT+TGG - chr1_4:39925226-39925245 None:intergenic 30.0%
AACTGGTATAATGAGCATAT+GGG + chr1_4:39928777-39928796 Msa0162670:three_prime_UTR 30.0%
!!! GAGATTACTTTTTTGATTGG+TGG + chr1_4:39928948-39928967 Msa0162670:three_prime_UTR 30.0%
!!! ATTACTTTTTTGATTGGTGG+TGG + chr1_4:39928951-39928970 Msa0162670:three_prime_UTR 30.0%
CAATAAGAAGCTTGAGATTA+GGG - chr1_4:39929019-39929038 None:intergenic 30.0%
ACAATAAGAAGCTTGAGATT+AGG - chr1_4:39929020-39929039 None:intergenic 30.0%
AAGCTTCTTATTGTTACTGA+AGG + chr1_4:39929026-39929045 Msa0162670:three_prime_UTR 30.0%
AGCTTCTTATTGTTACTGAA+GGG + chr1_4:39929027-39929046 Msa0162670:three_prime_UTR 30.0%
TGATTACTAAATGTTTGTGC+AGG + chr1_4:39929288-39929307 Msa0162670:intron 30.0%
GATTACTAAATGTTTGTGCA+GGG + chr1_4:39929289-39929308 Msa0162670:intron 30.0%
GAATTACCTCGAAAATACTT+GGG - chr1_4:39926014-39926033 None:intergenic 30.0%
!! CAAGTATTTTCGAGGTAATT+CGG + chr1_4:39926013-39926032 Msa0162670:intron 30.0%
! TTATGTTTTGCCATTGTATG+TGG + chr1_4:39929539-39929558 Msa0162670:three_prime_UTR 30.0%
TGATTAACATTCACAGCATT+TGG + chr1_4:39929781-39929800 Msa0162670:three_prime_UTR 30.0%
ATTGATGTACAATCACAAAG+TGG - chr1_4:39929884-39929903 None:intergenic 30.0%
GATTGTACATCAATCAAAGA+AGG + chr1_4:39929890-39929909 Msa0162670:three_prime_UTR 30.0%
TCTGTGTCATATATCTTATG+GGG + chr1_4:39929999-39930018 Msa0162670:three_prime_UTR 30.0%
! TATATCTTATGGGGTCTTTT+AGG + chr1_4:39930008-39930027 Msa0162670:three_prime_UTR 30.0%
AATGGAGGAATGAGTAGTAA+AGG - chr1_4:39919404-39919423 None:intergenic 35.0%
GAAGAGGGTTGAATAATTGA+GGG - chr1_4:39919489-39919508 None:intergenic 35.0%
TGAAGAGGGTTGAATAATTG+AGG - chr1_4:39919490-39919509 None:intergenic 35.0%
TCATGGAATGAAAATGAAGG+AGG - chr1_4:39919517-39919536 None:intergenic 35.0%
! TCCTTCATTTTCATTCCATG+AGG + chr1_4:39919516-39919535 Msa0162670:CDS 35.0%
TCCTCATGGAATGAAAATGA+AGG - chr1_4:39919520-39919539 None:intergenic 35.0%
! TTCATTTTCATTCCATGAGG+AGG + chr1_4:39919519-39919538 Msa0162670:CDS 35.0%
!! TTTTAGGTCTGAGTTCTGTA+AGG - chr1_4:39919596-39919615 None:intergenic 35.0%
! TTGATTCTGCTTCCTGTTTT+AGG - chr1_4:39919612-39919631 None:intergenic 35.0%
AACAAAGAGTCTCCTTGATT+GGG - chr1_4:39919635-39919654 None:intergenic 35.0%
TGGAAATGTTATATCTGTGG+AGG + chr1_4:39919711-39919730 Msa0162670:intron 35.0%
AATATTGATATGTGGGCTCT+AGG + chr1_4:39920062-39920081 Msa0162670:intron 35.0%
! TCAAGGACAAACTTGAGTTT+TGG + chr1_4:39920104-39920123 Msa0162670:intron 35.0%
! AGGATTTGCGTTTGTTACAA+TGG + chr1_4:39920246-39920265 Msa0162670:CDS 35.0%
GATAGTGCAGGTTGTTTATA+AGG - chr1_4:39920430-39920449 None:intergenic 35.0%
CTAGCAGAGTTCAATTCTAA+TGG + chr1_4:39920974-39920993 Msa0162670:intron 35.0%
TATGATGTTGTACAGACAGT+TGG + chr1_4:39921004-39921023 Msa0162670:intron 35.0%
CAAATAGGCTCAAACTATAG+AGG + chr1_4:39921082-39921101 Msa0162670:CDS 35.0%
!!! TTAGTTTTGTAATGATGGCG+AGG + chr1_4:39921673-39921692 Msa0162670:intron 35.0%
!!! TAGTTTTGTAATGATGGCGA+GGG + chr1_4:39921674-39921693 Msa0162670:intron 35.0%
! GAGCCTAAGTCTTATACAAT+CGG + chr1_4:39921701-39921720 Msa0162670:intron 35.0%
AAGCCGATTGTATAAGACTT+AGG - chr1_4:39921707-39921726 None:intergenic 35.0%
AGAATTGGGATATTGTTGCA+CGG - chr1_4:39921851-39921870 None:intergenic 35.0%
TTTCAGCTTTCACCAAACTA+AGG + chr1_4:39922075-39922094 Msa0162670:intron 35.0%
TATCCTAAGGTTCCTTAGTT+TGG - chr1_4:39922090-39922109 None:intergenic 35.0%
TACACTGTGAAGATATCCTA+AGG - chr1_4:39922103-39922122 None:intergenic 35.0%
! ATTTCCCTTTTGTCCTTACA+TGG - chr1_4:39922207-39922226 None:intergenic 35.0%
GATTACTTTCTTGACAACAC+AGG - chr1_4:39922241-39922260 None:intergenic 35.0%
GCTTCACTGTTGAAAGAAAA+AGG - chr1_4:39922430-39922449 None:intergenic 35.0%
ACGAAGGAAAAAAGAAGTGA+GGG - chr1_4:39922608-39922627 None:intergenic 35.0%
AACGAAGGAAAAAAGAAGTG+AGG - chr1_4:39922609-39922628 None:intergenic 35.0%
GGAAAATGTACAGTGACTTT+AGG - chr1_4:39922669-39922688 None:intergenic 35.0%
! GATAAGGATCTTCTACCTTT+TGG - chr1_4:39922694-39922713 None:intergenic 35.0%
TCCTTATCTTGCCTATGAAT+TGG + chr1_4:39922706-39922725 Msa0162670:intron 35.0%
ACCAATTCATAGGCAAGATA+AGG - chr1_4:39922710-39922729 None:intergenic 35.0%
AATGAATATATGTGGGACGT+GGG + chr1_4:39922732-39922751 Msa0162670:intron 35.0%
ACTAACATGCATATTGCTAG+GGG + chr1_4:39922934-39922953 Msa0162670:intron 35.0%
!!! TTAGCACCTCAAGAGTATTT+TGG - chr1_4:39923119-39923138 None:intergenic 35.0%
ATATTCAAAAAGGTAGCCCA+TGG - chr1_4:39923626-39923645 None:intergenic 35.0%
!! TTTTGGCTAAATACCTCATG+TGG + chr1_4:39923690-39923709 Msa0162670:intron 35.0%
ATAACTTAAAGGACCACATG+AGG - chr1_4:39923706-39923725 None:intergenic 35.0%
CCGTTTAACATTAAGATGGT+AGG + chr1_4:39923873-39923892 Msa0162670:intron 35.0%
AACCCGTAAGATCATTGATA+TGG + chr1_4:39923991-39924010 Msa0162670:intron 35.0%
AAAAAAAAAGGCAAGCGGAT+AGG + chr1_4:39924032-39924051 Msa0162670:intron 35.0%
ACCTAATAAAGCAAATGAGC+GGG + chr1_4:39924116-39924135 Msa0162670:intron 35.0%
CAAATGAGCGGGAAAAAATT+AGG + chr1_4:39924127-39924146 Msa0162670:intron 35.0%
AAAGGGGAAAAAGGTAGAAT+GGG - chr1_4:39924725-39924744 None:intergenic 35.0%
AAAAGGGGAAAAAGGTAGAA+TGG - chr1_4:39924726-39924745 None:intergenic 35.0%
AACCTAAAACACAGATGGTA+AGG - chr1_4:39924899-39924918 None:intergenic 35.0%
!! TTACCATCTGTGTTTTAGGT+TGG + chr1_4:39924898-39924917 Msa0162670:intron 35.0%
AACAAAAGCTAATGTGGTTC+TGG - chr1_4:39925007-39925026 None:intergenic 35.0%
TCCTAAATCTGATATGCTTC+TGG + chr1_4:39925071-39925090 Msa0162670:three_prime_UTR 35.0%
! TCCAGAAGCATATCAGATTT+AGG - chr1_4:39925075-39925094 None:intergenic 35.0%
AATGTGGCCATAAAGACATA+TGG + chr1_4:39925158-39925177 Msa0162670:intron 35.0%
CAGGCCAAAATATTCCATTA+TGG + chr1_4:39925219-39925238 Msa0162670:intron 35.0%
TCAAACTGATGGAACCATAA+TGG - chr1_4:39925236-39925255 None:intergenic 35.0%
! CGAATTTGAGATTGACACTA+TGG + chr1_4:39925334-39925353 Msa0162670:three_prime_UTR 35.0%
!!! GAGATTACTTTTTTGACTGG+TGG + chr1_4:39925549-39925568 Msa0162670:three_prime_UTR 35.0%
!!! ATTACTTTTTTGACTGGTGG+TGG + chr1_4:39925552-39925571 Msa0162670:three_prime_UTR 35.0%
TCTAATTGTTACTGAAGGGT+CGG + chr1_4:39925632-39925651 Msa0162670:three_prime_UTR 35.0%
TGCTCTTTATTCTGATGAAG+TGG + chr1_4:39925711-39925730 Msa0162670:intron 35.0%
TTGGTTGTAAAACTTGAGCA+AGG + chr1_4:39925798-39925817 Msa0162670:intron 35.0%
TGTAAAACTTGAGCAAGGTT+TGG + chr1_4:39925803-39925822 Msa0162670:intron 35.0%
AATCACTGTTAGTTGAAAGC+TGG - chr1_4:39925873-39925892 None:intergenic 35.0%
!! GATTTTAAGGGCAAAGTTAG+AGG + chr1_4:39925910-39925929 Msa0162670:three_prime_UTR 35.0%
!! TTGGTGATGCATTTGTTAGT+GGG + chr1_4:39925965-39925984 Msa0162670:three_prime_UTR 35.0%
! TTATGACCCAAGTATTTTCG+AGG + chr1_4:39926005-39926024 Msa0162670:three_prime_UTR 35.0%
AGAATGAAGTTGTGAGTGTT+TGG + chr1_4:39926067-39926086 Msa0162670:intron 35.0%
!! ATGAAGTTATTTTGTGTGGC+AGG + chr1_4:39926095-39926114 Msa0162670:intron 35.0%
! TTGAAAAGGTGATGGTTAAC+GGG - chr1_4:39926264-39926283 None:intergenic 35.0%
! AACCATCACCTTTTCAAACT+CGG + chr1_4:39926267-39926286 Msa0162670:three_prime_UTR 35.0%
CATTTAACAAATCCCCTAGT+TGG - chr1_4:39926332-39926351 None:intergenic 35.0%
!! CAACTAGGGGATTTGTTAAA+TGG + chr1_4:39926330-39926349 Msa0162670:three_prime_UTR 35.0%
! AAACAGATTTTCGCCTTTTG+GGG - chr1_4:39926366-39926385 None:intergenic 35.0%
! GAAACAGATTTTCGCCTTTT+GGG - chr1_4:39926367-39926386 None:intergenic 35.0%
GATCGGAAAACAGAAATTTC+TGG - chr1_4:39926389-39926408 None:intergenic 35.0%
! TTTTCCGATCTCAATTCTTG+TGG + chr1_4:39926399-39926418 Msa0162670:three_prime_UTR 35.0%
ACTACCACAAGAATTGAGAT+CGG - chr1_4:39926406-39926425 None:intergenic 35.0%
CAAACAGTTGTAGTAAACCA+TGG - chr1_4:39926618-39926637 None:intergenic 35.0%
GTTGTCCTCTACAAATTCAA+AGG + chr1_4:39926769-39926788 Msa0162670:three_prime_UTR 35.0%
GATGGTGTTCAAACAGTTTA+TGG + chr1_4:39926813-39926832 Msa0162670:three_prime_UTR 35.0%
! TCGTGGATTAAAGGTTTCTT+CGG + chr1_4:39926878-39926897 Msa0162670:intron 35.0%
TGCTATTCTCTCTGAGTAAA+AGG + chr1_4:39926949-39926968 Msa0162670:intron 35.0%
GCTATTCTCTCTGAGTAAAA+GGG + chr1_4:39926950-39926969 Msa0162670:intron 35.0%
AGGGATCTATTGGTATTTGT+AGG + chr1_4:39926981-39927000 Msa0162670:intron 35.0%
!! AATATTAAGGTATTGGGTGG+GGG + chr1_4:39927057-39927076 Msa0162670:three_prime_UTR 35.0%
TAGAACATAAGGACTTACCT+TGG - chr1_4:39927197-39927216 None:intergenic 35.0%
ATAAATACGTGTGTGAGACA+AGG + chr1_4:39927228-39927247 Msa0162670:intron 35.0%
GGAAGCTATAATAATTCTGC+CGG + chr1_4:39927330-39927349 Msa0162670:intron 35.0%
GAAGCTATAATAATTCTGCC+GGG + chr1_4:39927331-39927350 Msa0162670:intron 35.0%
AAGCTATAATAATTCTGCCG+GGG + chr1_4:39927332-39927351 Msa0162670:intron 35.0%
TAATCACAGAAATAGAACCC+CGG - chr1_4:39927352-39927371 None:intergenic 35.0%
! ACCAACAATTCATGTTTTGC+AGG + chr1_4:39927561-39927580 Msa0162670:intron 35.0%
ACCTGCAAAACATGAATTGT+TGG - chr1_4:39927565-39927584 None:intergenic 35.0%
! GTTAAAGTTCGTGCATTTTG+AGG + chr1_4:39928008-39928027 Msa0162670:intron 35.0%
TGGTTTCTATTCAATGGGAA+TGG - chr1_4:39928062-39928081 None:intergenic 35.0%
!!! CAGATGGTTAGGTTTTAAAG+TGG - chr1_4:39928082-39928101 None:intergenic 35.0%
AACACAAATGGTAAGGAGTT+AGG - chr1_4:39928287-39928306 None:intergenic 35.0%
! CTCCTTACCATTTGTGTTTT+AGG + chr1_4:39928289-39928308 Msa0162670:intron 35.0%
TGATCATAACCTCATCAAGA+AGG + chr1_4:39928502-39928521 Msa0162670:three_prime_UTR 35.0%
CAGGCCAAAATATTCCATTA+TGG + chr1_4:39925219-39925238 Msa0162670:intron 35.0%
TCAAACTGATGGAACCATAA+TGG - chr1_4:39925236-39925255 None:intergenic 35.0%
! CATGGTGTCAATCTCAAATT+CGG - chr1_4:39928736-39928755 None:intergenic 35.0%
GAACTGGTATAATGAGCATA+TGG + chr1_4:39928776-39928795 Msa0162670:three_prime_UTR 35.0%
GGATCTAGCAGATGTAATAA+AGG + chr1_4:39928798-39928817 Msa0162670:three_prime_UTR 35.0%
GAAAAAAGAATGACGTGCAA+TGG - chr1_4:39925475-39925494 None:intergenic 35.0%
TTGCTCTTTATTCTGATGAG+TGG + chr1_4:39929109-39929128 Msa0162670:intron 35.0%
! AATGTTTGTGCAGGGTTTTA+AGG + chr1_4:39929297-39929316 Msa0162670:intron 35.0%
!! ATGTTTGTGCAGGGTTTTAA+GGG + chr1_4:39929298-39929317 Msa0162670:intron 35.0%
CGAATTACCTCGAAAATACT+TGG - chr1_4:39929415-39929434 None:intergenic 35.0%
!! ATGAAGTTATTTTGTGTGGC+AGG + chr1_4:39926095-39926114 Msa0162670:intron 35.0%
! ACATCTTTTGCAAGTAATCC+AGG - chr1_4:39929616-39929635 None:intergenic 35.0%
AAAAGTTGAAGAGTCTGTGG+TGG - chr1_4:39919381-39919400 None:intergenic 40.0%
AGGAAAAGTTGAAGAGTCTG+TGG - chr1_4:39919384-39919403 None:intergenic 40.0%
TGGGAAGTTAAAGGAAATGG+AGG - chr1_4:39919419-39919438 None:intergenic 40.0%
GTGTGGGAAGTTAAAGGAAA+TGG - chr1_4:39919422-39919441 None:intergenic 40.0%
TGTTCTGTGTGGGAAGTTAA+AGG - chr1_4:39919428-39919447 None:intergenic 40.0%
! TTGTTGTTGCTGTTCTGTGT+GGG - chr1_4:39919438-39919457 None:intergenic 40.0%
TGGAATGAAAATGAAGGAGG+TGG - chr1_4:39919514-39919533 None:intergenic 40.0%
! ATTGTTGTTCTTCCTCCTCA+TGG - chr1_4:39919534-39919553 None:intergenic 40.0%
ACAGAACTCAGACCTAAAAC+AGG + chr1_4:39919597-39919616 Msa0162670:CDS 40.0%
AAGCAGAATCAACCCAATCA+AGG + chr1_4:39919620-39919639 Msa0162670:CDS 40.0%
CAACAAAGAGTCTCCTTGAT+TGG - chr1_4:39919636-39919655 None:intergenic 40.0%
CAATCAAGGAGACTCTTTGT+TGG + chr1_4:39919634-39919653 Msa0162670:intron 40.0%
TCCAAAGAGTTGAGCCAATT+GGG - chr1_4:39919686-39919705 None:intergenic 40.0%
GGCTGGAAATGTTATATCTG+TGG + chr1_4:39919708-39919727 Msa0162670:intron 40.0%
! TGCAATTTGAGGGACCATTT+TGG - chr1_4:39919836-39919855 None:intergenic 40.0%
ATCGACATAGACATCAGACA+TGG - chr1_4:39920020-39920039 None:intergenic 40.0%
GACATCACAAATAGAAGCAG+AGG + chr1_4:39920226-39920245 Msa0162670:CDS 40.0%
! TTGCGTTTGTTACAATGGAG+AGG + chr1_4:39920251-39920270 Msa0162670:CDS 40.0%
! TGCGTTTGTTACAATGGAGA+GGG + chr1_4:39920252-39920271 Msa0162670:CDS 40.0%
TGCAAAGTGTGCCAAAATCA+TGG + chr1_4:39920372-39920391 Msa0162670:intron 40.0%
AAAGTGTGCCAAAATCATGG+TGG + chr1_4:39920375-39920394 Msa0162670:intron 40.0%
! CAAGACTACCACCATGATTT+TGG - chr1_4:39920386-39920405 None:intergenic 40.0%
GTGCAGGTTGTTTATAAGGA+GGG - chr1_4:39920426-39920445 None:intergenic 40.0%
AGTGCAGGTTGTTTATAAGG+AGG - chr1_4:39920427-39920446 None:intergenic 40.0%
GGTATAAATTAGGCCCTGTT+TGG + chr1_4:39920653-39920672 Msa0162670:intron 40.0%
AGTTGGAGGTAGGGTTATTA+AGG + chr1_4:39921021-39921040 Msa0162670:CDS 40.0%
! TGTACCCTTTTGCCTACTTT+GGG - chr1_4:39921064-39921083 None:intergenic 40.0%
! TTGTACCCTTTTGCCTACTT+TGG - chr1_4:39921065-39921084 None:intergenic 40.0%
! GTAGGCAAAAGGGTACAAAT+AGG + chr1_4:39921067-39921086 Msa0162670:CDS 40.0%
TTCCAGCATAGATCTTGTGA+GGG - chr1_4:39921120-39921139 None:intergenic 40.0%
TTTCCAGCATAGATCTTGTG+AGG - chr1_4:39921121-39921140 None:intergenic 40.0%
AAGATCTATGCTGGAAACCT+TGG + chr1_4:39921124-39921143 Msa0162670:CDS 40.0%
!! AAAGGCTTCTCTAAGATCCT+GGG - chr1_4:39921164-39921183 None:intergenic 40.0%
! GTTGCTTTGAGTGCTATGAA+CGG + chr1_4:39921289-39921308 Msa0162670:CDS 40.0%
!!! ACTGTTTTTCAGGAGGTTCA+AGG + chr1_4:39921419-39921438 Msa0162670:intron 40.0%
CCAAATTCAGTCGTAAAGGT+CGG - chr1_4:39921445-39921464 None:intergenic 40.0%
ACAGCCAAATTCAGTCGTAA+AGG - chr1_4:39921449-39921468 None:intergenic 40.0%
TTTACGACTGAATTTGGCTG+TGG + chr1_4:39921448-39921467 Msa0162670:CDS 40.0%
TGAATTTGGCTGTGGATAAC+AGG + chr1_4:39921456-39921475 Msa0162670:CDS 40.0%
ATGCAGTAACCATGTTCAGT+TGG + chr1_4:39921907-39921926 Msa0162670:intron 40.0%
TTTGAAGAGCCAACTGAACA+TGG - chr1_4:39921919-39921938 None:intergenic 40.0%
! GCATGTACGTTTTTGCAGTA+TGG + chr1_4:39922040-39922059 Msa0162670:intron 40.0%
! TTTTTGCAGTATGGAACCTG+AGG + chr1_4:39922049-39922068 Msa0162670:intron 40.0%
GTGAAAGCTGAAATATCCTC+AGG - chr1_4:39922068-39922087 None:intergenic 40.0%
TCACCAAACTAAGGAACCTT+AGG + chr1_4:39922084-39922103 Msa0162670:intron 40.0%
TGACTTTAGGCGAAAATGAG+GGG - chr1_4:39922656-39922675 None:intergenic 40.0%
GTGACTTTAGGCGAAAATGA+GGG - chr1_4:39922657-39922676 None:intergenic 40.0%
AGTGACTTTAGGCGAAAATG+AGG - chr1_4:39922658-39922677 None:intergenic 40.0%
! CTGTACATTTTCCTCCCAAA+AGG + chr1_4:39922676-39922695 Msa0162670:intron 40.0%
CACGTCCCACATATATTCAT+TGG - chr1_4:39922733-39922752 None:intergenic 40.0%
CAATGAATATATGTGGGACG+TGG + chr1_4:39922731-39922750 Msa0162670:intron 40.0%
! TACCTTGTCGCAAAGTTTTG+AGG + chr1_4:39922989-39923008 Msa0162670:intron 40.0%
CTCTTGCCAAAATACTCTTG+AGG + chr1_4:39923110-39923129 Msa0162670:intron 40.0%
!! AACCACTTGGATTAGTCTAG+TGG + chr1_4:39923461-39923480 Msa0162670:intron 40.0%
!! TTGGATTAGTCTAGTGGTGT+TGG + chr1_4:39923467-39923486 Msa0162670:intron 40.0%
AACGAAGTTGGGTGAAAAGA+GGG - chr1_4:39923837-39923856 None:intergenic 40.0%
TAACGAAGTTGGGTGAAAAG+AGG - chr1_4:39923838-39923857 None:intergenic 40.0%
CAAGCGGATAGGAATGAAAT+TGG + chr1_4:39924043-39924062 Msa0162670:intron 40.0%
! TCCCGCTCATTTGCTTTATT+AGG - chr1_4:39924120-39924139 None:intergenic 40.0%
GAATTCTGCAACGAAACAAG+TGG + chr1_4:39924201-39924220 Msa0162670:intron 40.0%
!!! AGTGGACTGGTTGTTTGTTT+TGG + chr1_4:39924219-39924238 Msa0162670:intron 40.0%
AATAGATTTCGTGCCAACAG+TGG + chr1_4:39924251-39924270 Msa0162670:intron 40.0%
ATAGATTTCGTGCCAACAGT+GGG + chr1_4:39924252-39924271 Msa0162670:intron 40.0%
TGTATTGAAAGCAGGCACTT+CGG - chr1_4:39924292-39924311 None:intergenic 40.0%
!! ATTCCCAAGCTCACTTTTCA+GGG - chr1_4:39924567-39924586 None:intergenic 40.0%
! GTTAAAGTTCGTGCGTTTTG+AGG + chr1_4:39924605-39924624 Msa0162670:intron 40.0%
AAGGGGAAAAAGGTAGAATG+GGG - chr1_4:39924724-39924743 None:intergenic 40.0%
! CTCCTTACCATCTGTGTTTT+AGG + chr1_4:39924894-39924913 Msa0162670:intron 40.0%
! TAGGTTGGAGCAGATGAATT+TGG + chr1_4:39924913-39924932 Msa0162670:intron 40.0%
AGGTTGGAGCAGATGAATTT+GGG + chr1_4:39924914-39924933 Msa0162670:intron 40.0%
ATGTTGATACATCTGGCATG+CGG + chr1_4:39924968-39924987 Msa0162670:three_prime_UTR 40.0%
TGATCATAACCTCATCAAGC+AGG + chr1_4:39925107-39925126 Msa0162670:three_prime_UTR 40.0%
AGAGTCTTTAGCGATTCTCA+AGG - chr1_4:39925292-39925311 None:intergenic 40.0%
GGATCTAGCCGATGTAATAA+AGG + chr1_4:39925398-39925417 Msa0162670:three_prime_UTR 40.0%
!! GATGAAGTGGACTGAAATGT+TGG + chr1_4:39925724-39925743 Msa0162670:intron 40.0%
GACACTCAATGACGAATAGT+TGG + chr1_4:39925779-39925798 Msa0162670:intron 40.0%
GGTGTCAATGTTAAACCTGT+TGG + chr1_4:39925931-39925950 Msa0162670:three_prime_UTR 40.0%
AACAAATGCATCACCAACAC+CGG - chr1_4:39925962-39925981 None:intergenic 40.0%
!! GTTGGTGATGCATTTGTTAG+TGG + chr1_4:39925964-39925983 Msa0162670:three_prime_UTR 40.0%
!! TTATTTTGTGTGGCAGGATG+AGG + chr1_4:39926101-39926120 Msa0162670:intron 40.0%
! TGAAAAGGTGATGGTTAACG+GGG - chr1_4:39926263-39926282 None:intergenic 40.0%
! ACCATCACCTTTTCAAACTC+GGG + chr1_4:39926268-39926287 Msa0162670:three_prime_UTR 40.0%
AACCAAACCCGAGTTTGAAA+AGG - chr1_4:39926278-39926297 None:intergenic 40.0%
! AACAGATTTTCGCCTTTTGG+GGG - chr1_4:39926365-39926384 None:intergenic 40.0%
! GGAAACAGATTTTCGCCTTT+TGG - chr1_4:39926368-39926387 None:intergenic 40.0%
GATCTCAATTCTTGTGGTAG+TGG + chr1_4:39926405-39926424 Msa0162670:three_prime_UTR 40.0%
ATGCTCAAAACTTCTCTCCA+TGG + chr1_4:39926453-39926472 Msa0162670:three_prime_UTR 40.0%
! GTGTGAAGTGTCCATCATAT+AGG - chr1_4:39926705-39926724 None:intergenic 40.0%
CACTTCACACTCAAATGCAT+TGG + chr1_4:39926715-39926734 Msa0162670:intron 40.0%
! ACACTCAAATGCATTGGCAT+TGG + chr1_4:39926721-39926740 Msa0162670:intron 40.0%
CAGGTCGATGAAATTATCCA+TGG + chr1_4:39926744-39926763 Msa0162670:intron 40.0%
AGGCACCTTTGAATTTGTAG+AGG - chr1_4:39926777-39926796 None:intergenic 40.0%
!! CATCGGTCATTTTGAACATC+AGG - chr1_4:39926797-39926816 None:intergenic 40.0%
CTGATGTTCAAAATGACCGA+TGG + chr1_4:39926795-39926814 Msa0162670:three_prime_UTR 40.0%
CAAACTTGAAGGGCTTCAAT+AGG - chr1_4:39926852-39926871 None:intergenic 40.0%
GAAGAAACCTTTAATCCACG+AGG - chr1_4:39926879-39926898 None:intergenic 40.0%
TGAGTAAAAGGGTGAACTTG+AGG + chr1_4:39926961-39926980 Msa0162670:intron 40.0%
GAGTAAAAGGGTGAACTTGA+GGG + chr1_4:39926962-39926981 Msa0162670:intron 40.0%
GGTCGAAATCTCTAATGTTG+AGG + chr1_4:39927002-39927021 Msa0162670:intron 40.0%
TAAAGAGCAGTTGAGATCAG+AGG - chr1_4:39927296-39927315 None:intergenic 40.0%
GATCATGTTACCCGTATGAA+AGG + chr1_4:39927417-39927436 Msa0162670:intron 40.0%
!!! GCTTGTTTTGTTGGAGCTTT+CGG - chr1_4:39927607-39927626 None:intergenic 40.0%
GAAAGCTCCAACAAAACAAG+CGG + chr1_4:39927606-39927625 Msa0162670:three_prime_UTR 40.0%
AATAGGTTTCGTGCCATCAA+TGG + chr1_4:39927656-39927675 Msa0162670:three_prime_UTR 40.0%
ATAGGTTTCGTGCCATCAAT+GGG + chr1_4:39927657-39927676 Msa0162670:three_prime_UTR 40.0%
TTTCTTGTAAGCAGCCGTTT+CGG - chr1_4:39927697-39927716 None:intergenic 40.0%
!! ATTCCCAAGCTCACTTTTCA+GGG - chr1_4:39924567-39924586 None:intergenic 40.0%
ATGGGAAGTTACAGATGGTT+AGG - chr1_4:39928093-39928112 None:intergenic 40.0%
TGGAAATGGGAAGTTACAGA+TGG - chr1_4:39928098-39928117 None:intergenic 40.0%
AATAAGAAATGGGAGAAGGG+TGG - chr1_4:39928128-39928147 None:intergenic 40.0%
GCTCCAACCTAAAACACAAA+TGG - chr1_4:39928299-39928318 None:intergenic 40.0%
! TAGGTTGGAGCAAATGAATG+TGG + chr1_4:39928308-39928327 Msa0162670:intron 40.0%
AGGTTGGAGCAAATGAATGT+GGG + chr1_4:39928309-39928328 Msa0162670:intron 40.0%
ATGTTGATACATCTGGCATG+CGG + chr1_4:39924968-39924987 Msa0162670:three_prime_UTR 40.0%
AATAAAACCCAACGTGGTTC+TGG - chr1_4:39928402-39928421 None:intergenic 40.0%
!! TTAAAGGCACCTTCTTGATG+AGG - chr1_4:39928514-39928533 None:intergenic 40.0%
AGAGTCTTTAGCGATTCTCA+AGG - chr1_4:39925292-39925311 None:intergenic 40.0%
! CGAATTTGAGATTGACACCA+TGG + chr1_4:39928734-39928753 Msa0162670:three_prime_UTR 40.0%
TATTGTTACTGAAGGGTCGA+AGG + chr1_4:39929034-39929053 Msa0162670:three_prime_UTR 40.0%
ATTGTTACTGAAGGGTCGAA+GGG + chr1_4:39929035-39929054 Msa0162670:three_prime_UTR 40.0%
GGGTTGTAGATATTACACCA+AGG + chr1_4:39929055-39929074 Msa0162670:three_prime_UTR 40.0%
!! TGATGAGTGGACTGAAATGT+TGG + chr1_4:39929122-39929141 Msa0162670:intron 40.0%
ACTAGCAGGTTGTAAACCAT+GGG + chr1_4:39929193-39929212 Msa0162670:intron 40.0%
AATCACTGTTAGCTGAATGC+TGG - chr1_4:39929273-39929292 None:intergenic 40.0%
! CTGGTGATGCATTTGTTAGT+GGG + chr1_4:39929365-39929384 Msa0162670:three_prime_UTR 40.0%
! TTCTGACCCAAGTATTTTCG+AGG + chr1_4:39929405-39929424 Msa0162670:three_prime_UTR 40.0%
!! TTATTTTGTGTGGCAGGATG+AGG + chr1_4:39926101-39926120 Msa0162670:intron 40.0%
TGGCAAAACATAACGCTTCT+CGG - chr1_4:39929532-39929551 None:intergenic 40.0%
CCTATATTGCATCAGATTGC+TGG - chr1_4:39929642-39929661 None:intergenic 40.0%
CCAGCAATCTGATGCAATAT+AGG + chr1_4:39929639-39929658 Msa0162670:three_prime_UTR 40.0%
! TCAGAAGGTTAGTCACTCTA+CGG - chr1_4:39929698-39929717 None:intergenic 40.0%
GACATCAAAACCAAGTCAGA+AGG - chr1_4:39929713-39929732 None:intergenic 40.0%
GTACTGCAACATTCAAGCTT+TGG + chr1_4:39929751-39929770 Msa0162670:three_prime_UTR 40.0%
! GTTGTTGTTGCTGTTCTGTG+TGG - chr1_4:39919439-39919458 None:intergenic 45.0%
ATGAAGGAGGTGGATGAAGA+GGG - chr1_4:39919504-39919523 None:intergenic 45.0%
AATGAAGGAGGTGGATGAAG+AGG - chr1_4:39919505-39919524 None:intergenic 45.0%
! TCCCAATTGGCTCAACTCTT+TGG + chr1_4:39919682-39919701 Msa0162670:intron 45.0%
CTCCAAAGAGTTGAGCCAAT+TGG - chr1_4:39919687-39919706 None:intergenic 45.0%
! ATTGGCTCAACTCTTTGGAG+AGG + chr1_4:39919687-39919706 Msa0162670:intron 45.0%
!!! TGAGGGACCATTTTGGAATG+AGG - chr1_4:39919829-39919848 None:intergenic 45.0%
! GTTTGTTACAATGGAGAGGG+TGG + chr1_4:39920255-39920274 Msa0162670:CDS 45.0%
GATGTTGTACAGACAGTTGG+AGG + chr1_4:39921007-39921026 Msa0162670:intron 45.0%
TTGTACAGACAGTTGGAGGT+AGG + chr1_4:39921011-39921030 Msa0162670:intron 45.0%
TGTACAGACAGTTGGAGGTA+GGG + chr1_4:39921012-39921031 Msa0162670:intron 45.0%
AAGTGCCCAAAGTAGGCAAA+AGG + chr1_4:39921056-39921075 Msa0162670:CDS 45.0%
AGTGCCCAAAGTAGGCAAAA+GGG + chr1_4:39921057-39921076 Msa0162670:CDS 45.0%
TCTATGCTGGAAACCTTGGT+TGG + chr1_4:39921128-39921147 Msa0162670:CDS 45.0%
CTATGCTGGAAACCTTGGTT+GGG + chr1_4:39921129-39921148 Msa0162670:CDS 45.0%
!! CAAAGGCTTCTCTAAGATCC+TGG - chr1_4:39921165-39921184 None:intergenic 45.0%
TAAGCCTGATTGCTCAGCAA+AGG - chr1_4:39921182-39921201 None:intergenic 45.0%
GTCGTCTACGAAAGGAACAA+CGG + chr1_4:39921214-39921233 Msa0162670:CDS 45.0%
AGGAACAACGGAAAATCTCG+CGG + chr1_4:39921226-39921245 Msa0162670:CDS 45.0%
AACGGAAAATCTCGCGGATA+TGG + chr1_4:39921232-39921251 Msa0162670:CDS 45.0%
TGTCTCTTTCGAAACTGCTG+AGG + chr1_4:39921258-39921277 Msa0162670:CDS 45.0%
CCGACCTTTACGACTGAATT+TGG + chr1_4:39921442-39921461 Msa0162670:CDS 45.0%
TCAATTACCGGAGGAGATGA+AGG - chr1_4:39921485-39921504 None:intergenic 45.0%
! AGGATCTTCTACCTTTTGGG+AGG - chr1_4:39922690-39922709 None:intergenic 45.0%
GACGTGGGACTCTTTCAAAA+CGG + chr1_4:39922747-39922766 Msa0162670:intron 45.0%
TGGGACTCTTTCAAAACGGT+GGG + chr1_4:39922751-39922770 Msa0162670:intron 45.0%
CACCACTAGACTAATCCAAG+TGG - chr1_4:39923466-39923485 None:intergenic 45.0%
CAAGGAGCTGTATTGAAAGC+AGG - chr1_4:39924300-39924319 None:intergenic 45.0%
GCTTTCAATACAGCTCCTTG+TGG + chr1_4:39924300-39924319 Msa0162670:three_prime_UTR 45.0%
CAATACAGCTCCTTGTGGTA+CGG + chr1_4:39924305-39924324 Msa0162670:three_prime_UTR 45.0%
AACTCCCTGAAAAGTGAGCT+TGG + chr1_4:39924560-39924579 Msa0162670:intron 45.0%
ACTCCCTGAAAAGTGAGCTT+GGG + chr1_4:39924561-39924580 Msa0162670:intron 45.0%
!! CATTCCCAAGCTCACTTTTC+AGG - chr1_4:39924568-39924587 None:intergenic 45.0%
GCTCCAACCTAAAACACAGA+TGG - chr1_4:39924904-39924923 None:intergenic 45.0%
!! TTAAAGGCACCTGCTTGATG+AGG - chr1_4:39925119-39925138 None:intergenic 45.0%
TGGCTCGTCAATCAAACTGA+TGG - chr1_4:39925247-39925266 None:intergenic 45.0%
TATACCATTTCGAGCAGCCT+CGG - chr1_4:39925367-39925386 None:intergenic 45.0%
TGACTTTGGCAAGCTTACCT+TGG - chr1_4:39925676-39925695 None:intergenic 45.0%
GTTAAACCTGTTGGCACAAC+CGG + chr1_4:39925940-39925959 Msa0162670:three_prime_UTR 45.0%
ACCCGAGTTTGAAAAGGTGA+TGG - chr1_4:39926272-39926291 None:intergenic 45.0%
! CACCTTTTCAAACTCGGGTT+TGG + chr1_4:39926273-39926292 Msa0162670:three_prime_UTR 45.0%
!! CAAACTCGGGTTTGGTTTGA+AGG + chr1_4:39926281-39926300 Msa0162670:three_prime_UTR 45.0%
!! GTTTGGTTTGAAGGCAGACA+AGG + chr1_4:39926290-39926309 Msa0162670:three_prime_UTR 45.0%
CTGAATGTCTTCGCCAACTA+GGG + chr1_4:39926316-39926335 Msa0162670:three_prime_UTR 45.0%
TGAATGTCTTCGCCAACTAG+GGG + chr1_4:39926317-39926336 Msa0162670:three_prime_UTR 45.0%
!! TCAAATGCATTGGCATTGGC+AGG + chr1_4:39926725-39926744 Msa0162670:intron 45.0%
TTTGTAGAGGACAACAGCCA+TGG - chr1_4:39926764-39926783 None:intergenic 45.0%
CAGATGAAAAGGATGTCTCG+TGG - chr1_4:39926906-39926925 None:intergenic 45.0%
GGTGAACTTGAGGGATCTAT+TGG + chr1_4:39926971-39926990 Msa0162670:intron 45.0%
TCTAATGTTGAGGTGAGACG+TGG + chr1_4:39927012-39927031 Msa0162670:three_prime_UTR 45.0%
!! GAGACGTGGACTATTGATTC+TGG + chr1_4:39927026-39927045 Msa0162670:three_prime_UTR 45.0%
!! GAAAGAAGTTCTAAAGCCCG+TGG + chr1_4:39927110-39927129 Msa0162670:three_prime_UTR 45.0%
TGACTAGGATCATCAACCAC+GGG - chr1_4:39927129-39927148 None:intergenic 45.0%
GTGACTAGGATCATCAACCA+CGG - chr1_4:39927130-39927149 None:intergenic 45.0%
AACGTTGAGCTACTGTGACT+AGG - chr1_4:39927144-39927163 None:intergenic 45.0%
!!! AACCAGTCCGCTTGTTTTGT+TGG - chr1_4:39927616-39927635 None:intergenic 45.0%
!!! AGCGGACTGGTTGTTTGTTT+TGG + chr1_4:39927624-39927643 Msa0162670:three_prime_UTR 45.0%
GCTTACAAGAAAGCTCCTTG+TGG + chr1_4:39927705-39927724 Msa0162670:three_prime_UTR 45.0%
GCAGTTGGCATCTCTAAGTT+GGG + chr1_4:39924336-39924355 Msa0162670:three_prime_UTR 45.0%
CAGTTGGCATCTCTAAGTTG+GGG + chr1_4:39924337-39924356 Msa0162670:three_prime_UTR 45.0%
! AGTTGGCATCTCTAAGTTGG+GGG + chr1_4:39924338-39924357 Msa0162670:three_prime_UTR 45.0%
AACTCCCTGAAAAGTGAGCT+TGG + chr1_4:39924560-39924579 Msa0162670:intron 45.0%
ACTCCCTGAAAAGTGAGCTT+GGG + chr1_4:39924561-39924580 Msa0162670:intron 45.0%
!! CATTCCCAAGCTCACTTTTC+AGG - chr1_4:39924568-39924587 None:intergenic 45.0%
AAATGGGAGAAGGGTGGAAT+GGG - chr1_4:39928122-39928141 None:intergenic 45.0%
TTCTAATGCCAGAACCACGT+TGG + chr1_4:39928391-39928410 Msa0162670:three_prime_UTR 45.0%
TCTAATGCCAGAACCACGTT+GGG + chr1_4:39928392-39928411 Msa0162670:three_prime_UTR 45.0%
GCATATCAGCGCTAGGATTT+CGG - chr1_4:39928463-39928482 None:intergenic 45.0%
!!! TCCTAGCGCTGATATGCTTT+TGG + chr1_4:39928466-39928485 Msa0162670:three_prime_UTR 45.0%
! TCCAAAAGCATATCAGCGCT+AGG - chr1_4:39928470-39928489 None:intergenic 45.0%
TGGCTCGTCAATCAAACTGA+TGG - chr1_4:39925247-39925266 None:intergenic 45.0%
TGACTTTGGCAAGCTTACCT+TGG - chr1_4:39925676-39925695 None:intergenic 45.0%
GACTAGCAGGTTGTAAACCA+TGG + chr1_4:39929192-39929211 Msa0162670:intron 45.0%
! GCTGGTGATGCATTTGTTAG+TGG + chr1_4:39929364-39929383 Msa0162670:three_prime_UTR 45.0%
CATTGTATGTGGCGTGATCA+CGG + chr1_4:39929550-39929569 Msa0162670:three_prime_UTR 45.0%
ATTGTATGTGGCGTGATCAC+GGG + chr1_4:39929551-39929570 Msa0162670:three_prime_UTR 45.0%
GAGTGACTAACCTTCTGACT+TGG + chr1_4:39929700-39929719 Msa0162670:three_prime_UTR 45.0%
!!! TAATAAATTTAAGATATTTT+TGG + chr1_4:39920131-39920150 Msa0162670:intron 5.0%
!! TATAAATATAAATATGAAAA+GGG - chr1_4:39922381-39922400 None:intergenic 5.0%
!! ATATAAATATAAATATGAAA+AGG - chr1_4:39922382-39922401 None:intergenic 5.0%
!!! TTAATATGTAATTTTTTTTT+AGG - chr1_4:39922876-39922895 None:intergenic 5.0%
!!! AATATACTTTATTTTATATT+TGG + chr1_4:39923081-39923100 Msa0162670:intron 5.0%
!!! TGTATAATTTTAATTTAATA+CGG + chr1_4:39925190-39925209 Msa0162670:intron 5.0%
!! ATAATAAATTATTATTATCA+CGG + chr1_4:39926553-39926572 Msa0162670:intron 5.0%
AGAGTCTGTGGTGGCAGATA+GGG - chr1_4:39919372-39919391 None:intergenic 50.0%
AAGAGTCTGTGGTGGCAGAT+AGG - chr1_4:39919373-39919392 None:intergenic 50.0%
!! TGGCGTTGACGTGTTATGTC+AGG + chr1_4:39919991-39920010 Msa0162670:intron 50.0%
TGTTACAATGGAGAGGGTGG+AGG + chr1_4:39920258-39920277 Msa0162670:CDS 50.0%
! GTTTATAAGGAGGGTGCAGC+AGG - chr1_4:39920417-39920436 None:intergenic 50.0%
! CCAGGTTCAAGTGATAGTGC+AGG - chr1_4:39920442-39920461 None:intergenic 50.0%
CCTGCACTATCACTTGAACC+TGG + chr1_4:39920439-39920458 Msa0162670:intron 50.0%
!! TTCCCAGAAGTGCCCAAAGT+AGG + chr1_4:39921049-39921068 Msa0162670:CDS 50.0%
TGCCTACTTTGGGCACTTCT+GGG - chr1_4:39921054-39921073 None:intergenic 50.0%
TTGCCTACTTTGGGCACTTC+TGG - chr1_4:39921055-39921074 None:intergenic 50.0%
AGCCCTCACAAGATCTATGC+TGG + chr1_4:39921115-39921134 Msa0162670:CDS 50.0%
GGGAAGTCATATCCCAACCA+AGG - chr1_4:39921144-39921163 None:intergenic 50.0%
TGGTTGGGATATGACTTCCC+AGG + chr1_4:39921144-39921163 Msa0162670:CDS 50.0%
GAAGCCTTTGCTGAGCAATC+AGG + chr1_4:39921175-39921194 Msa0162670:CDS 50.0%
AATCAGGCTTACTGAGTGCC+AGG + chr1_4:39921191-39921210 Msa0162670:CDS 50.0%
ATCAGGCTTACTGAGTGCCA+GGG + chr1_4:39921192-39921211 Msa0162670:CDS 50.0%
CGAAACTGCTGAGGATGTAG+AGG + chr1_4:39921267-39921286 Msa0162670:CDS 50.0%
TTTGAGTGCTATGAACGGCG+TGG + chr1_4:39921294-39921313 Msa0162670:CDS 50.0%
AGGGACCACTTTGAACAGAG+GGG - chr1_4:39921584-39921603 None:intergenic 50.0%
GAGGGACCACTTTGAACAGA+GGG - chr1_4:39921585-39921604 None:intergenic 50.0%
TGAGGGACCACTTTGAACAG+AGG - chr1_4:39921586-39921605 None:intergenic 50.0%
AGTCGACTGCACGGTAAAGT+CGG - chr1_4:39921732-39921751 None:intergenic 50.0%
ACAGTCTACAGTCGACTGCA+CGG - chr1_4:39921741-39921760 None:intergenic 50.0%
CGCTGCAGCCGATTATAGAT+CGG - chr1_4:39921799-39921818 None:intergenic 50.0%
GTGGGACTCTTTCAAAACGG+TGG + chr1_4:39922750-39922769 Msa0162670:intron 50.0%
GCGACAAGGTAGTTTGAGAG+AGG - chr1_4:39922980-39922999 None:intergenic 50.0%
CGCCTCAAAACTTTGCGACA+AGG - chr1_4:39922994-39923013 None:intergenic 50.0%
AAAAAGGTAGCCCATGGCGA+GGG - chr1_4:39923620-39923639 None:intergenic 50.0%
CTGCAACGAAACAAGTGGAC+TGG + chr1_4:39924206-39924225 Msa0162670:intron 50.0%
GATTGACGAGCCATGCAAGT+CGG + chr1_4:39925254-39925273 Msa0162670:three_prime_UTR 50.0%
! CTTGAGCAAGGTTTGGTTCG+AGG + chr1_4:39925810-39925829 Msa0162670:intron 50.0%
TTTGTGTGGCAGGATGAGGA+AGG + chr1_4:39926105-39926124 Msa0162670:intron 50.0%
! GAAGTCTGAGGTTCGAGAAC+AGG - chr1_4:39926234-39926253 None:intergenic 50.0%
GTGATGGTTAACGGGGCAAT+CGG - chr1_4:39926256-39926275 None:intergenic 50.0%
GCTGAATGTCTTCGCCAACT+AGG + chr1_4:39926315-39926334 Msa0162670:three_prime_UTR 50.0%
CCTGCAATATGAAGGGACCA+TGG - chr1_4:39926473-39926492 None:intergenic 50.0%
CCATGGTCCCTTCATATTGC+AGG + chr1_4:39926470-39926489 Msa0162670:three_prime_UTR 50.0%
ACGAGGCGCACAAACTTGAA+GGG - chr1_4:39926862-39926881 None:intergenic 50.0%
! TTGTGCGCCTCGTGGATTAA+AGG + chr1_4:39926869-39926888 Msa0162670:three_prime_UTR 50.0%
GAACATCACTGATGCTGTCC+AGG + chr1_4:39927164-39927183 Msa0162670:three_prime_UTR 50.0%
ACTTACCTTGGTTGCTTGCC+TGG - chr1_4:39927185-39927204 None:intergenic 50.0%
CTCCAACAAAACAAGCGGAC+TGG + chr1_4:39927611-39927630 Msa0162670:three_prime_UTR 50.0%
GGCAGTTGGCATCTCTAAGT+TGG + chr1_4:39924335-39924354 Msa0162670:three_prime_UTR 50.0%
! GTTGGCATCTCTAAGTTGGG+GGG + chr1_4:39924339-39924358 Msa0162670:three_prime_UTR 50.0%
AATGGGAGAAGGGTGGAATG+GGG - chr1_4:39928121-39928140 None:intergenic 50.0%
GAAATGGGAGAAGGGTGGAA+TGG - chr1_4:39928123-39928142 None:intergenic 50.0%
GATTGACGAGCCATGCAAGT+CGG + chr1_4:39925254-39925273 Msa0162670:three_prime_UTR 50.0%
CACTCTCAATGACGACTAGC+AGG + chr1_4:39929179-39929198 Msa0162670:intron 50.0%
CAGGTTGTAAACCATGGGCA+AGG + chr1_4:39929198-39929217 Msa0162670:intron 50.0%
CTCAAAGCAAACCTTGCCCA+TGG - chr1_4:39929212-39929231 None:intergenic 50.0%
! CATGGGCAAGGTTTGCTTTG+AGG + chr1_4:39929210-39929229 Msa0162670:intron 50.0%
CGTGATCACGCCACATACAA+TGG - chr1_4:39929552-39929571 None:intergenic 50.0%
TTGTATGTGGCGTGATCACG+GGG + chr1_4:39929552-39929571 Msa0162670:three_prime_UTR 50.0%
TCTGTGGTGGCAGATAGGGA+AGG - chr1_4:39919368-39919387 None:intergenic 55.0%
! GCTCAACTCTTTGGAGAGGC+TGG + chr1_4:39919691-39919710 Msa0162670:intron 55.0%
GTTCCTTTCGTAGACGACCC+TGG - chr1_4:39921212-39921231 None:intergenic 55.0%
CAGGAAGCCTTCATCTCCTC+CGG + chr1_4:39921475-39921494 Msa0162670:CDS 55.0%
TCCTCCCCCTCTGTTCAAAG+TGG + chr1_4:39921576-39921595 Msa0162670:intron 55.0%
ACCACTTTGAACAGAGGGGG+AGG - chr1_4:39921580-39921599 None:intergenic 55.0%
GGGACCACTTTGAACAGAGG+GGG - chr1_4:39921583-39921602 None:intergenic 55.0%
AAAAGGTAGCCCATGGCGAG+GGG - chr1_4:39923619-39923638 None:intergenic 55.0%
CAAAAAGGTAGCCCATGGCG+AGG - chr1_4:39923621-39923640 None:intergenic 55.0%
! CTTTTGACCCGTGCGTTGCA+CGG + chr1_4:39923930-39923949 Msa0162670:intron 55.0%
! TTTTGACCCGTGCGTTGCAC+GGG + chr1_4:39923931-39923950 Msa0162670:intron 55.0%
AGAAAACCCGTGCAACGCAC+GGG - chr1_4:39923940-39923959 None:intergenic 55.0%
GAGAAAACCCGTGCAACGCA+CGG - chr1_4:39923941-39923960 None:intergenic 55.0%
GATTTCGTGCCAACAGTGGG+TGG + chr1_4:39924255-39924274 Msa0162670:intron 55.0%
AGAGACACTCCACCCACTGT+TGG - chr1_4:39924267-39924286 None:intergenic 55.0%
TCCTTGTGGTACGGCAAACG+TGG + chr1_4:39924314-39924333 Msa0162670:three_prime_UTR 55.0%
!! GCAAGATGAGCCGACTTGCA+TGG - chr1_4:39925267-39925286 None:intergenic 55.0%
! GTCTGAGGTTCGAGAACAGG+CGG - chr1_4:39926231-39926250 None:intergenic 55.0%
TGGCTTCGATGTCCCCCAAA+AGG + chr1_4:39926350-39926369 Msa0162670:three_prime_UTR 55.0%
CACGAGGCGCACAAACTTGA+AGG - chr1_4:39926863-39926882 None:intergenic 55.0%
! CTTCAAGTTTGTGCGCCTCG+TGG + chr1_4:39926861-39926880 Msa0162670:three_prime_UTR 55.0%
GGTTTCGTGCCATCAATGGG+TGG + chr1_4:39927660-39927679 Msa0162670:three_prime_UTR 55.0%
TTGTAAGCAGCCGTTTCGGC+TGG - chr1_4:39927693-39927712 None:intergenic 55.0%
TCCTTGTGGTACCGCAAACG+TGG + chr1_4:39927719-39927738 Msa0162670:three_prime_UTR 55.0%
GATGCCAACTGCCACGTTTG+CGG - chr1_4:39924328-39924347 None:intergenic 55.0%
GGGTGGAATGGGGTGGAAAT+GGG - chr1_4:39928111-39928130 None:intergenic 55.0%
AGGGTGGAATGGGGTGGAAA+TGG - chr1_4:39928112-39928131 None:intergenic 55.0%
!! GCAAGATGAGCCGACTTGCA+TGG - chr1_4:39925267-39925286 None:intergenic 55.0%
CCAGCACCAGTTGTGTCAAC+AGG - chr1_4:39929349-39929368 None:intergenic 55.0%
CCTGTTGACACAACTGGTGC+TGG + chr1_4:39929346-39929365 Msa0162670:three_prime_UTR 55.0%
ACAGAGAGAGGGGCAATTCC+TGG + chr1_4:39929595-39929614 Msa0162670:intron 55.0%
GTGCCAGGGTCGTCTACGAA+AGG + chr1_4:39921206-39921225 Msa0162670:CDS 60.0%
AGATCATGCCCCCTCGCCAT+GGG + chr1_4:39923607-39923626 Msa0162670:intron 60.0%
AAAGGTAGCCCATGGCGAGG+GGG - chr1_4:39923618-39923637 None:intergenic 60.0%
GCCACGTTTGCCGTACCACA+AGG - chr1_4:39924318-39924337 None:intergenic 60.0%
GACACTATGGCCATCAGCCG+AGG + chr1_4:39925347-39925366 Msa0162670:three_prime_UTR 60.0%
TTTCGAGCAGCCTCGGCTGA+TGG - chr1_4:39925360-39925379 None:intergenic 60.0%
TCAGCCGAGGCTGCTCGAAA+TGG + chr1_4:39925360-39925379 Msa0162670:three_prime_UTR 60.0%
! CCAACACCGGTTGTGCCAAC+AGG - chr1_4:39925949-39925968 None:intergenic 60.0%
CCTGTTGGCACAACCGGTGT+TGG + chr1_4:39925946-39925965 Msa0162670:three_prime_UTR 60.0%
GTGGAGAAGTAGGTCGGGAG+TGG - chr1_4:39926206-39926225 None:intergenic 60.0%
CGGCAGTGGAGAAGTAGGTC+GGG - chr1_4:39926211-39926230 None:intergenic 60.0%
GCGGCAGTGGAGAAGTAGGT+CGG - chr1_4:39926212-39926231 None:intergenic 60.0%
ACAGGCGGCAGTGGAGAAGT+AGG - chr1_4:39926216-39926235 None:intergenic 60.0%
ACGGGGCAATCGGAAGTCTG+AGG - chr1_4:39926246-39926265 None:intergenic 60.0%
GCTGTCCAGGCAAGCAACCA+AGG + chr1_4:39927177-39927196 Msa0162670:three_prime_UTR 60.0%
GGAGACGCTCCACCCATTGA+TGG - chr1_4:39927672-39927691 None:intergenic 60.0%
! TGGAGCGTCTCCAGCCGAAA+CGG + chr1_4:39927680-39927699 Msa0162670:three_prime_UTR 60.0%
GCCACGTTTGCGGTACCACA+AGG - chr1_4:39927723-39927742 None:intergenic 60.0%
GGTACCGCAAACGTGGCAGT+TGG + chr1_4:39927726-39927745 Msa0162670:three_prime_UTR 60.0%
GACACCATGGCCATCAGACG+AGG + chr1_4:39928747-39928766 Msa0162670:three_prime_UTR 60.0%
GTTCGAGCAGCCTCGTCTGA+TGG - chr1_4:39928760-39928779 None:intergenic 60.0%
TCAGACGAGGCTGCTCGAAC+TGG + chr1_4:39928760-39928779 Msa0162670:three_prime_UTR 60.0%
ATGTGGCGTGATCACGGGGA+CGG + chr1_4:39929556-39929575 Msa0162670:three_prime_UTR 60.0%
TGATCACGGGGACGGAGAGA+GGG + chr1_4:39929564-39929583 Msa0162670:intron 60.0%
GAGATCATGCCCCCTCGCCA+TGG + chr1_4:39923606-39923625 Msa0162670:intron 65.0%
GGTTCGAGAACAGGCGGCAG+TGG - chr1_4:39926225-39926244 None:intergenic 65.0%
GGGAGAAGGGTGGAATGGGG+TGG - chr1_4:39928118-39928137 None:intergenic 65.0%
GCAGCCTCGTCTGATGGCCA+TGG - chr1_4:39928754-39928773 None:intergenic 65.0%
GTGATCACGGGGACGGAGAG+AGG + chr1_4:39929563-39929582 Msa0162670:intron 65.0%
GATCACGGGGACGGAGAGAG+GGG + chr1_4:39929565-39929584 Msa0162670:intron 65.0%
! AGGGGCACGGGGACAGAGAG+AGG + chr1_4:39929583-39929602 Msa0162670:intron 70.0%
GGGGCACGGGGACAGAGAGA+GGG + chr1_4:39929584-39929603 Msa0162670:intron 70.0%
GGGCACGGGGACAGAGAGAG+GGG + chr1_4:39929585-39929604 Msa0162670:intron 70.0%
CGGGGACGGAGAGAGGGGCA+CGG + chr1_4:39929570-39929589 Msa0162670:intron 75.0%
! GGGGACGGAGAGAGGGGCAC+GGG + chr1_4:39929571-39929590 Msa0162670:intron 75.0%
! GGGACGGAGAGAGGGGCACG+GGG + chr1_4:39929572-39929591 Msa0162670:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 39919343 39930032 39919343 ID=Msa0162670;Name=Msa0162670
chr1_4 mRNA 39919343 39930032 39919343 ID=Msa0162670-mRNA-1;Parent=Msa0162670;Name=Msa0162670-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.94|0.94|1|0.88|0.78|19|2885|279
chr1_4 exon 39919343 39919651 39919343 ID=Msa0162670-mRNA-1:exon:11564;Parent=Msa0162670-mRNA-1
chr1_4 exon 39920214 39920315 39920214 ID=Msa0162670-mRNA-1:exon:11565;Parent=Msa0162670-mRNA-1
chr1_4 exon 39921019 39921315 39921019 ID=Msa0162670-mRNA-1:exon:11566;Parent=Msa0162670-mRNA-1
chr1_4 exon 39921431 39921563 39921431 ID=Msa0162670-mRNA-1:exon:11567;Parent=Msa0162670-mRNA-1
chr1_4 exon 39924256 39924383 39924256 ID=Msa0162670-mRNA-1:exon:11568;Parent=Msa0162670-mRNA-1
chr1_4 exon 39924916 39925128 39924916 ID=Msa0162670-mRNA-1:exon:11569;Parent=Msa0162670-mRNA-1
chr1_4 exon 39925222 39925419 39925222 ID=Msa0162670-mRNA-1:exon:11570;Parent=Msa0162670-mRNA-1
chr1_4 exon 39925537 39925677 39925537 ID=Msa0162670-mRNA-1:exon:11571;Parent=Msa0162670-mRNA-1
chr1_4 exon 39925910 39926026 39925910 ID=Msa0162670-mRNA-1:exon:11572;Parent=Msa0162670-mRNA-1
chr1_4 exon 39926117 39926491 39926117 ID=Msa0162670-mRNA-1:exon:11573;Parent=Msa0162670-mRNA-1
chr1_4 exon 39926747 39926890 39926747 ID=Msa0162670-mRNA-1:exon:11574;Parent=Msa0162670-mRNA-1
chr1_4 exon 39927003 39927198 39927003 ID=Msa0162670-mRNA-1:exon:11575;Parent=Msa0162670-mRNA-1
chr1_4 exon 39927583 39927788 39927583 ID=Msa0162670-mRNA-1:exon:11576;Parent=Msa0162670-mRNA-1
chr1_4 exon 39928311 39928523 39928311 ID=Msa0162670-mRNA-1:exon:11577;Parent=Msa0162670-mRNA-1
chr1_4 exon 39928622 39928819 39928622 ID=Msa0162670-mRNA-1:exon:11578;Parent=Msa0162670-mRNA-1
chr1_4 exon 39928936 39929076 39928936 ID=Msa0162670-mRNA-1:exon:11579;Parent=Msa0162670-mRNA-1
chr1_4 exon 39929310 39929426 39929310 ID=Msa0162670-mRNA-1:exon:11580;Parent=Msa0162670-mRNA-1
chr1_4 exon 39929515 39929577 39929515 ID=Msa0162670-mRNA-1:exon:11581;Parent=Msa0162670-mRNA-1
chr1_4 exon 39929599 39930032 39929599 ID=Msa0162670-mRNA-1:exon:11582;Parent=Msa0162670-mRNA-1
chr1_4 CDS 39919343 39919651 39919343 ID=Msa0162670-mRNA-1:cds;Parent=Msa0162670-mRNA-1
chr1_4 CDS 39920214 39920315 39920214 ID=Msa0162670-mRNA-1:cds;Parent=Msa0162670-mRNA-1
chr1_4 CDS 39921019 39921315 39921019 ID=Msa0162670-mRNA-1:cds;Parent=Msa0162670-mRNA-1
chr1_4 CDS 39921431 39921562 39921431 ID=Msa0162670-mRNA-1:cds;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39921563 39921563 39921563 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39924256 39924383 39924256 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39924916 39925128 39924916 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39925222 39925419 39925222 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39925537 39925677 39925537 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39925910 39926026 39925910 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39926117 39926491 39926117 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39926747 39926890 39926747 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39927003 39927198 39927003 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39927583 39927788 39927583 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39928311 39928523 39928311 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39928622 39928819 39928622 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39928936 39929076 39928936 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39929310 39929426 39929310 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39929515 39929577 39929515 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
chr1_4 three_prime_UTR 39929599 39930032 39929599 ID=Msa0162670-mRNA-1:three_prime_utr;Parent=Msa0162670-mRNA-1
Gene Sequence

>Msa0162670

ATGGCTAGTGCAAGCACTGGTTCCTTCCCTATCTGCCACCACAGACTCTTCAACTTTTCCTTTACTACTCATTCCTCCATTTCCTTTAACTTCCCACACAGAACAGCAACAACAACCATTTCTACAAAACCCTTCAATTTAATCCCTCAATTATTCAACCCTCTTCATCCACCTCCTTCATTTTCATTCCATGAGGAGGAAGAACAACAATACTCTGAATCTGAATCTGAATCTGAAACTGAAATTGAAACCTTACAGAACTCAGACCTAAAACAGGAAGCAGAATCAACCCAATCAAGGAGACTCTTTATTGTGTATGATGACATCACAAATAGAAGCAGAGGATTTGCGTTTGTTACAATGGAGAGGGTGGAGGATGCTGAAGAATCAATTCGAATGTTTGATGGCACTACAGTTGGAGGTAGGGTTATTAAGGTGAACTTCCCAGAAGTGCCCAAAGTAGGCAAAAGGGTACAAATAGGCTCAAACTATAGAGGTTATGTTGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTGAGCAATCAGGCTTACTGAGTGCCAGGGTCGTCTACGAAAGGAACAACGGAAAATCTCGCGGATATGGATTTGTCTCTTTCGAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAACGGCGTGGAGGTTCAAGGCCGACCTTTACGACTGAATTTGGCTGTGGATAACAGGAAGCCTTCATCTCCTCCGGTAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGCAAATGA
Protein sequence

>Msa0162670

MASASTGSFPICHHRLFNFSFTTHSSISFNFPHRTATTTISTKPFNLIPQLFNPLHPPPSFSFHEEEEQQYSESESESETEIETLQNSDLKQEAESTQSRRLFIVYDDITNRSRGFAFVTMERVEDAEESIRMFDGTTVGGRVIKVNFPEVPKVGKRVQIGSNYRGYVDSPHKIYAGNLGWDMTSQDLREAFAEQSGLLSARVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLNLAVDNRKPSSPPVIDQNKGNNVDSLEMLFGISK*