AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0164420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164420 MtrunA17_Chr1g0177101 74.603 315 40 6 1 279 1 311 3.71e-152 427
Msa0164420 MtrunA17_Chr7g0267571 50.649 308 97 10 14 274 14 313 5.80e-88 265
Msa0164420 MtrunA17_Chr1g0168601 42.282 149 78 1 104 252 93 233 6.13e-36 128
Msa0164420 MtrunA17_Chr3g0087481 42.759 145 83 0 104 248 91 235 1.52e-35 127
Msa0164420 MtrunA17_Chr1g0181111 30.622 209 122 2 63 248 64 272 3.61e-27 106
Msa0164420 MtrunA17_Chr3g0116631 36.735 147 91 2 104 250 140 284 4.46e-26 103
Msa0164420 MtrunA17_Chr4g0058151 35.862 145 88 2 104 248 153 292 1.51e-25 102
Msa0164420 MtrunA17_Chr5g0411091 37.681 138 82 2 112 248 134 268 2.00e-19 86.3
Msa0164420 MtrunA17_Chr3g0119311 35.955 89 55 1 172 260 36 122 1.04e-16 75.1
Msa0164420 MtrunA17_Chr3g0132451 26.840 231 142 6 25 245 43 256 1.38e-15 75.1
Msa0164420 MtrunA17_Chr7g0219021 36.471 85 54 0 170 254 38 122 5.04e-15 73.2
Msa0164420 MtrunA17_Chr2g0288251 26.364 220 136 8 51 256 32 239 2.76e-14 72.4
Msa0164420 MtrunA17_Chr2g0328791 27.568 185 113 4 81 252 13 189 3.00e-14 72.4
Msa0164420 MtrunA17_Chr4g0074711 27.320 194 118 5 69 248 60 244 1.72e-13 70.1
Msa0164420 MtrunA17_Chr4g0045221 27.368 190 122 4 81 257 114 300 2.20e-13 69.7
Msa0164420 MtrunA17_Chr1g0179701 28.571 147 99 3 105 248 272 415 3.49e-13 69.3
Msa0164420 MtrunA17_Chr3g0121631 39.506 81 48 1 170 250 34 113 5.96e-13 65.1
Msa0164420 MtrunA17_Chr2g0278661 36.842 76 48 0 173 248 8 83 1.05e-12 66.2
Msa0164420 MtrunA17_Chr4g0061451 35.366 82 51 1 173 254 43 122 1.32e-12 66.2
Msa0164420 MtrunA17_Chr7g0265341 32.576 132 81 4 112 243 196 319 1.90e-12 67.4
Msa0164420 MtrunA17_Chr7g0265341 27.215 158 95 4 103 248 278 427 7.24e-12 65.5
Msa0164420 MtrunA17_Chr7g0219031 41.538 65 38 0 170 234 38 102 4.39e-12 62.0
Msa0164420 MtrunA17_Chr1g0153181 29.897 194 111 5 71 253 214 393 4.63e-12 66.2
Msa0164420 MtrunA17_Chr4g0035051 31.250 80 55 0 169 248 5 84 5.44e-12 61.6
Msa0164420 MtrunA17_Chr3g0110211 25.676 148 97 3 102 248 54 189 5.62e-12 65.5
Msa0164420 MtrunA17_Chr4g0050781 33.766 77 51 0 172 248 7 83 7.98e-12 63.2
Msa0164420 MtrunA17_Chr4g0035001 30.864 81 56 0 168 248 2 82 9.19e-12 62.0
Msa0164420 MtrunA17_Chr4g0035031 33.735 83 55 0 166 248 2 84 1.55e-11 62.0
Msa0164420 MtrunA17_Chr4g0070231 25.581 172 111 3 109 273 78 239 2.22e-11 63.5
Msa0164420 MtrunA17_Chr1g0210241 35.065 77 50 0 172 248 7 83 2.39e-11 62.8
Msa0164420 MtrunA17_Chr1g0190211 37.838 74 46 0 172 245 132 205 6.32e-11 61.2
Msa0164420 MtrunA17_Chr1g0153871 26.126 222 136 6 50 258 71 277 7.05e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164420 AT3G52380.1 52.217 203 89 4 84 278 126 328 4.15e-69 217
Msa0164420 AT1G60000.1 43.448 145 75 1 104 248 116 253 3.68e-35 127
Msa0164420 AT3G52150.2 39.333 150 89 1 101 248 104 253 5.33e-29 111
Msa0164420 AT3G52150.1 39.333 150 89 1 101 248 104 253 5.33e-29 111
Msa0164420 AT5G50250.1 40.000 145 82 4 104 248 144 283 4.16e-27 107
Msa0164420 AT2G35410.1 34.742 213 99 6 67 249 70 272 5.28e-26 104
Msa0164420 AT2G37220.1 33.333 159 92 2 104 248 122 280 8.78e-26 103
Msa0164420 AT4G24770.1 37.086 151 89 5 104 254 181 325 1.60e-25 103
Msa0164420 AT4G24770.2 37.086 151 89 5 104 254 181 325 1.60e-25 103
Msa0164420 AT1G01080.1 35.036 137 83 3 110 241 145 280 2.79e-17 80.5
Msa0164420 AT1G01080.2 35.036 137 83 3 110 241 146 281 3.41e-17 80.1
Msa0164420 AT1G01080.3 34.646 127 78 2 110 231 145 271 1.03e-15 75.9
Msa0164420 AT3G53460.1 36.364 77 49 0 172 248 257 333 7.54e-15 73.9
Msa0164420 AT3G53460.3 36.364 77 49 0 172 248 257 333 7.54e-15 73.9
Msa0164420 AT3G53460.2 36.364 77 49 0 172 248 257 333 7.54e-15 73.9
Msa0164420 AT3G53460.4 36.364 77 49 0 172 248 278 354 8.95e-15 73.9
Msa0164420 AT4G13850.3 40.000 85 49 1 173 257 36 118 1.01e-14 70.1
Msa0164420 AT4G13850.2 40.000 85 49 1 173 257 36 118 1.23e-14 70.1
Msa0164420 AT4G13850.1 40.000 85 49 1 173 257 36 118 1.37e-14 70.1
Msa0164420 AT5G19350.1 25.352 213 125 7 55 252 4 197 5.50e-14 72.0
Msa0164420 AT3G08000.1 33.010 103 67 1 173 275 42 142 5.59e-14 68.2
Msa0164420 AT5G19350.2 25.352 213 125 7 55 252 4 197 5.81e-14 71.6
Msa0164420 AT4G13850.4 39.759 83 48 1 173 255 36 116 1.20e-13 67.0
Msa0164420 AT5G54900.1 25.243 206 131 6 78 268 55 252 4.45e-13 68.9
Msa0164420 AT3G23830.2 36.471 85 52 1 173 257 36 118 4.79e-13 65.5
Msa0164420 AT3G23830.1 36.471 85 52 1 173 257 36 118 4.79e-13 65.5
Msa0164420 AT3G14100.1 28.313 166 102 3 116 274 98 253 1.50e-12 67.8
Msa0164420 AT5G61030.2 35.802 81 52 0 170 250 38 118 1.54e-12 67.0
Msa0164420 AT5G61030.1 35.802 81 52 0 170 250 38 118 1.54e-12 67.0
Msa0164420 AT1G54080.1 27.273 165 103 3 116 273 102 256 1.64e-12 67.4
Msa0164420 AT3G16380.1 29.333 150 99 4 104 248 232 379 1.91e-12 67.4
Msa0164420 AT4G27000.1 27.326 172 111 5 104 270 111 273 4.28e-12 66.2
Msa0164420 AT5G47320.1 38.889 90 53 1 173 262 32 119 5.05e-12 64.3
Msa0164420 AT1G47490.2 26.271 236 147 8 32 249 49 275 5.07e-12 65.5
Msa0164420 AT2G23350.1 32.450 151 94 3 104 248 255 403 5.22e-12 66.2
Msa0164420 AT4G09040.1 29.710 138 87 3 112 245 132 263 5.36e-12 65.5
Msa0164420 AT3G26420.1 31.633 98 63 1 169 266 4 97 5.67e-12 64.7
Msa0164420 AT4G09040.2 29.710 138 87 3 112 245 72 203 8.02e-12 64.3
Msa0164420 AT1G47490.1 26.271 236 147 8 32 249 49 275 9.64e-12 65.1
Msa0164420 AT4G39260.3 31.169 77 53 0 172 248 6 82 1.33e-11 60.1
Msa0164420 AT4G39260.2 30.769 78 54 0 171 248 5 82 1.37e-11 61.2
Msa0164420 AT2G21660.2 31.250 80 55 0 169 248 5 84 2.60e-11 61.2
Msa0164420 AT4G39260.1 30.769 78 54 0 171 248 5 82 3.29e-11 61.2
Msa0164420 AT2G21660.1 31.250 80 55 0 169 248 5 84 3.54e-11 61.2
Msa0164420 AT1G54080.2 27.219 169 102 4 116 273 102 260 3.70e-11 63.5
Msa0164420 AT3G19130.1 26.455 189 117 5 78 252 103 283 6.49e-11 62.8
Msa0164420 AT1G11650.1 25.000 220 126 7 49 252 40 236 8.81e-11 62.0
Msa0164420 AT4G13860.1 37.333 75 47 0 173 247 4 78 9.24e-11 57.8

Find 295 sgRNAs with CRISPR-Local

Find 738 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCTACTTTGGGCACTTC+TGG 0.130934 1_4:+43913797 None:intergenic
CCGACCTTTACGACTGAATT+TGG 0.142633 1_4:-43913407 Msa0164420:CDS
GATGGTGTTCAAACAGTTTA+TGG 0.162791 1_4:-43908037 Msa0164420:three_prime_UTR
CAACTAGGGGATTTGTTAAA+TGG 0.198919 1_4:-43908520 Msa0164420:three_prime_UTR
GATAGCTTGGAAATGTTATT+TGG 0.203210 1_4:-43913322 Msa0164420:CDS
AGTTGGAGGTAGGGTTATTA+AGG 0.221845 1_4:-43913828 Msa0164420:CDS
GATCGGAAAACAGAAATTTC+TGG 0.226659 1_4:+43908464 None:intergenic
GGAACCATAATGGAATATTT+TGG 0.235298 1_4:+43906227 None:intergenic
GGAACCATAATGGAATATTT+TGG 0.235298 1_4:+43909627 None:intergenic
TCTGGTTCCTGAAAATATTA+AGG 0.249090 1_4:-43907806 Msa0164420:three_prime_UTR
CCATGGTCCCTTCATATTGC+AGG 0.250844 1_4:-43908380 Msa0164420:intron
AATCTGTGTCATATATCTTA+TGG 0.251187 1_4:-43904853 Msa0164420:three_prime_UTR
TCCAGAAGCATATCAGATTT+AGG 0.259112 1_4:+43909778 None:intergenic
AACGGAAAATCTCGCGGATA+TGG 0.262481 1_4:-43913617 Msa0164420:CDS
TCCTAGCGCTGATATGCTTT+TGG 0.276116 1_4:-43906384 Msa0164420:three_prime_UTR
TCCTAAATCTGATATGCTTC+TGG 0.287865 1_4:-43909779 Msa0164420:three_prime_UTR
CAGGCCAAAATATTCCATTA+TGG 0.292003 1_4:-43906231 Msa0164420:three_prime_UTR
CAGGCCAAAATATTCCATTA+TGG 0.292003 1_4:-43909631 Msa0164420:three_prime_UTR
CAATTAGAAGCTTGAGATTA+GGG 0.296290 1_4:+43909233 None:intergenic
CAACAAAGAGTCTCCTTGAT+TGG 0.305570 1_4:+43915216 None:intergenic
TAGGTTGGAGCAGATGAATT+TGG 0.306305 1_4:-43909937 Msa0164420:three_prime_UTR
TGATTAACATTCACAGCATT+TGG 0.310638 1_4:-43905069 Msa0164420:three_prime_UTR
GAAGAAACTAATTTCATGTT+TGG 0.313427 1_4:-43905033 Msa0164420:three_prime_UTR
AGGTTGGAGCAGATGAATTT+GGG 0.318393 1_4:-43909936 Msa0164420:three_prime_UTR
CCTGAAAATATTAAGGTATT+GGG 0.321240 1_4:-43907799 Msa0164420:three_prime_UTR
TCCTGAAAATATTAAGGTAT+TGG 0.322587 1_4:-43907800 Msa0164420:three_prime_UTR
CAATAAGAAGCTTGAGATTA+GGG 0.330590 1_4:+43905834 None:intergenic
TGTTCTGTGTGGGAAGTTAA+AGG 0.331544 1_4:+43915424 None:intergenic
GCATATCAGCGCTAGGATTT+CGG 0.331860 1_4:+43906390 None:intergenic
TTGTGCGCCTCGTGGATTAA+AGG 0.337267 1_4:-43907981 Msa0164420:intron
ACAGAGAGAGGGGCAATTCC+TGG 0.339155 1_4:-43905255 Msa0164420:intron
GAAATGGTATAATGAGCATT+TGG 0.340160 1_4:-43909474 Msa0164420:three_prime_UTR
AGCGGACTGGTTGTTTGTTT+TGG 0.340563 1_4:-43907226 Msa0164420:three_prime_UTR
AATAAAACCCAACGTGGTTC+TGG 0.343732 1_4:+43906451 None:intergenic
GCATATCAGATTTAGGATTT+CGG 0.347289 1_4:+43909785 None:intergenic
TGCCTACTTTGGGCACTTCT+GGG 0.350774 1_4:+43913798 None:intergenic
CAAAATAATGTTGATACATC+TGG 0.351909 1_4:-43909889 Msa0164420:three_prime_UTR
ACTTACCTTGGTTGCTTGCC+TGG 0.352024 1_4:+43907668 None:intergenic
AACAAAAGCTAATGTGGTTC+TGG 0.352720 1_4:+43909846 None:intergenic
AGGAAATAATGTTGATAGCT+TGG 0.353289 1_4:-43913335 Msa0164420:CDS
CCTATATTGCATCAGATTGC+TGG 0.353324 1_4:+43905211 None:intergenic
CGAATTTGAGATTGACACTA+TGG 0.353768 1_4:-43909516 Msa0164420:three_prime_UTR
GGGCACGGGGACAGAGAGAG+GGG 0.361649 1_4:-43905265 Msa0164420:intron
ACAATTAGAAGCTTGAGATT+AGG 0.362928 1_4:+43909232 None:intergenic
ATCTGTGTCATATATCTTAT+GGG 0.363244 1_4:-43904852 Msa0164420:three_prime_UTR
GAGACGTGGACTATTGATTC+TGG 0.371249 1_4:-43907824 Msa0164420:three_prime_UTR
CCAGCAATCTGATGCAATAT+AGG 0.374599 1_4:-43905211 Msa0164420:three_prime_UTR
CGAATTACCTCGAAAATACT+TGG 0.375128 1_4:+43905438 None:intergenic
GAATCAATTCGAATGTTTGA+TGG 0.379569 1_4:-43914560 Msa0164420:CDS
CAAACTCGGGTTTGGTTTGA+AGG 0.380328 1_4:-43908569 Msa0164420:three_prime_UTR
ACAATAAGAAGCTTGAGATT+AGG 0.381243 1_4:+43905833 None:intergenic
TGAATTTGGCTGTGGATAAC+AGG 0.383307 1_4:-43913393 Msa0164420:CDS
CAAACTTGAAGGGCTTCAAT+AGG 0.386956 1_4:+43908001 None:intergenic
GTTAAACCTGTTGGCACAAC+CGG 0.387954 1_4:-43908910 Msa0164420:three_prime_UTR
ATTGTTGTTCTTCCTCCTCA+TGG 0.388722 1_4:+43915318 None:intergenic
TTGAAAAGGTGATGGTTAAC+GGG 0.391257 1_4:+43908589 None:intergenic
GAACTGGTATAATGAGCATA+TGG 0.394625 1_4:-43906074 Msa0164420:three_prime_UTR
GCAGTTGGCATCTCTAAGTT+GGG 0.396668 1_4:-43907109 Msa0164420:three_prime_UTR
GCAGTTGGCATCTCTAAGTT+GGG 0.396668 1_4:-43910514 Msa0164420:three_prime_UTR
TCAAACTGATGGAACCATAA+TGG 0.399197 1_4:+43906217 None:intergenic
TCAAACTGATGGAACCATAA+TGG 0.399197 1_4:+43909617 None:intergenic
TTTGAAAAGGTGATGGTTAA+CGG 0.402781 1_4:+43908588 None:intergenic
AACAAAGAGTCTCCTTGATT+GGG 0.407980 1_4:+43915217 None:intergenic
CATAGTGTCAATCTCAAATT+CGG 0.408332 1_4:+43909517 None:intergenic
GTACTGCAACATTCAAGCTT+TGG 0.411764 1_4:-43905099 Msa0164420:three_prime_UTR
CATGGTGTCAATCTCAAATT+CGG 0.412055 1_4:+43906117 None:intergenic
AATAGGTTTCGTGCCATCAA+TGG 0.416290 1_4:-43907194 Msa0164420:three_prime_UTR
CAAAGGCTTCTCTAAGATCC+TGG 0.418070 1_4:+43913687 None:intergenic
TTTGTTACACATAGAGCTAA+TGG 0.419627 1_4:-43909829 Msa0164420:three_prime_UTR
AAATGGTATAATGAGCATTT+GGG 0.420401 1_4:-43909473 Msa0164420:three_prime_UTR
CCGGTAATTGATCAAAATAA+AGG 0.422043 1_4:-43913355 Msa0164420:CDS
GGCAGTTGGCATCTCTAAGT+TGG 0.428328 1_4:-43907110 Msa0164420:three_prime_UTR
GGCAGTTGGCATCTCTAAGT+TGG 0.428328 1_4:-43910515 Msa0164420:three_prime_UTR
GGATCTAGCCGATGTAATAA+AGG 0.430417 1_4:-43909452 Msa0164420:intron
TGAAGAGGGTTGAATAATTG+AGG 0.432626 1_4:+43915362 None:intergenic
GTGTGGGAAGTTAAAGGAAA+TGG 0.433410 1_4:+43915430 None:intergenic
CCAACACCGGTTGTGCCAAC+AGG 0.433859 1_4:+43908904 None:intergenic
TTGTAAGCAGCCGTTTCGGC+TGG 0.438140 1_4:+43907160 None:intergenic
TGAATTACCTCGAAAATACT+TGG 0.438736 1_4:+43908838 None:intergenic
GAAGCCTTTGCTGAGCAATC+AGG 0.442092 1_4:-43913674 Msa0164420:CDS
GAAGTCTGAGGTTCGAGAAC+AGG 0.442945 1_4:+43908619 None:intergenic
CACGAGGCGCACAAACTTGA+AGG 0.443534 1_4:+43907990 None:intergenic
GTAGGCAAAAGGGTACAAAT+AGG 0.445334 1_4:-43913782 Msa0164420:CDS
AAGTGCCCAAAGTAGGCAAA+AGG 0.446953 1_4:-43913793 Msa0164420:CDS
TTTCTTGTAAGCAGCCGTTT+CGG 0.448612 1_4:+43907156 None:intergenic
GGGGCACGGGGACAGAGAGA+GGG 0.449099 1_4:-43905266 Msa0164420:intron
GGATCTAGCAGATGTAATAA+AGG 0.449697 1_4:-43906052 Msa0164420:intron
AATCAGGCTTACTGAGTGCC+AGG 0.450781 1_4:-43913658 Msa0164420:CDS
CTGAATGTCTTCGCCAACTA+GGG 0.452242 1_4:-43908534 Msa0164420:three_prime_UTR
AAGAGTCTGTGGTGGCAGAT+AGG 0.457732 1_4:+43915479 None:intergenic
CTGGTGATGCATTTGTTAGT+GGG 0.458027 1_4:-43905485 Msa0164420:three_prime_UTR
TGGCAAAACATAACACTTCT+CGG 0.459014 1_4:+43905321 None:intergenic
TCTAATGCCAGAACCACGTT+GGG 0.459889 1_4:-43906458 Msa0164420:three_prime_UTR
GCTGGTGATGCATTTGTTAG+TGG 0.461233 1_4:-43905486 Msa0164420:three_prime_UTR
AATATTAAGGTATTGGGTGG+GGG 0.461783 1_4:-43907793 Msa0164420:three_prime_UTR
AATTGAAACCTGCAATATGA+AGG 0.464575 1_4:+43908372 None:intergenic
GGAGACGCTCCACCCATTGA+TGG 0.464703 1_4:+43907181 None:intergenic
CATTTAACAAATCCCCTAGT+TGG 0.465854 1_4:+43908521 None:intergenic
GTTGGTGATGCATTTGTTAG+TGG 0.467897 1_4:-43908886 Msa0164420:three_prime_UTR
TAATTGAGGGATTAAATTGA+AGG 0.470815 1_4:+43915376 None:intergenic
CCAGCACCAGTTGTGTCAAC+AGG 0.471899 1_4:+43905504 None:intergenic
GAACATCACTGATGCTGTCC+AGG 0.473168 1_4:-43907686 Msa0164420:three_prime_UTR
TTGGTGATGCATTTGTTAGT+GGG 0.474932 1_4:-43908885 Msa0164420:three_prime_UTR
TCAGACGAGGCTGCTCGAAC+TGG 0.475775 1_4:-43906090 Msa0164420:three_prime_UTR
GAAGAGGGTTGAATAATTGA+GGG 0.476001 1_4:+43915363 None:intergenic
ATTGTATGTGGCGTGATCAC+GGG 0.478446 1_4:-43905299 Msa0164420:three_prime_UTR
ATAGGTTTCGTGCCATCAAT+GGG 0.481493 1_4:-43907193 Msa0164420:three_prime_UTR
AAAGCGTTAAAATTTGCAAT+GGG 0.481506 1_4:-43908715 Msa0164420:three_prime_UTR
CGGCAGTGGAGAAGTAGGTC+GGG 0.482863 1_4:+43908642 None:intergenic
ACAGAACTCAGACCTAAAAC+AGG 0.483263 1_4:-43915252 Msa0164420:CDS
AGAGTCTGTGGTGGCAGATA+GGG 0.485185 1_4:+43915480 None:intergenic
GATGCCAACTGCCACGTTTG+CGG 0.486096 1_4:+43907120 None:intergenic
AAGATCTATGCTGGAAACCT+TGG 0.486607 1_4:-43913725 Msa0164420:CDS
AACCAAACCCGAGTTTGAAA+AGG 0.487924 1_4:+43908575 None:intergenic
AAGCTTCTAATTGTTACTGA+AGG 0.488063 1_4:-43909223 Msa0164420:three_prime_UTR
TCAGCCGAGGCTGCTCGAAA+TGG 0.490523 1_4:-43909490 Msa0164420:three_prime_UTR
GTTCGAGCAGCCTCGTCTGA+TGG 0.491161 1_4:+43906093 None:intergenic
AATGGAGGAATGAGTAGTAA+AGG 0.493216 1_4:+43915448 None:intergenic
AATACAACATCGTCATCATA+AGG 0.493335 1_4:+43909271 None:intergenic
CAAATAGGCTCAAACTATAG+AGG 0.494932 1_4:-43913767 Msa0164420:CDS
GTTGAACCTGTTGACACAAC+TGG 0.496302 1_4:-43905510 Msa0164420:three_prime_UTR
AAGCTTCTTATTGTTACTGA+AGG 0.496838 1_4:-43905824 Msa0164420:three_prime_UTR
CCTGTTGACACAACTGGTGC+TGG 0.498429 1_4:-43905504 Msa0164420:three_prime_UTR
GGTTCGAGAACAGGCGGCAG+TGG 0.498877 1_4:+43908628 None:intergenic
ACAGGCGGCAGTGGAGAAGT+AGG 0.499372 1_4:+43908637 None:intergenic
CAGTTGGCATCTCTAAGTTG+GGG 0.501143 1_4:-43907108 Msa0164420:three_prime_UTR
CAGTTGGCATCTCTAAGTTG+GGG 0.501143 1_4:-43910513 Msa0164420:three_prime_UTR
TTTCGAGCAGCCTCGGCTGA+TGG 0.501826 1_4:+43909493 None:intergenic
GATCTCAATTCTTGTGGTAG+TGG 0.503726 1_4:-43908445 Msa0164420:three_prime_UTR
AAATATTAAGGTATTGGGTG+GGG 0.504989 1_4:-43907794 Msa0164420:three_prime_UTR
AATACAACATCATCATCATA+AGG 0.505738 1_4:+43905872 None:intergenic
TAGGTTGGAGCAAATGAATG+TGG 0.505893 1_4:-43906542 Msa0164420:three_prime_UTR
AGGTTGGAGCAAATGAATGT+GGG 0.509327 1_4:-43906541 Msa0164420:three_prime_UTR
TTTACGACTGAATTTGGCTG+TGG 0.511362 1_4:-43913401 Msa0164420:CDS
CTATGCTGGAAACCTTGGTT+GGG 0.512049 1_4:-43913720 Msa0164420:CDS
TGAAATTAGTTTCTTCACAT+TGG 0.513254 1_4:+43905040 None:intergenic
AGGATTTGCGTTTGTTACAA+TGG 0.514453 1_4:-43914603 Msa0164420:CDS
TCAATTACCGGAGGAGATGA+AGG 0.515198 1_4:+43913367 None:intergenic
AAAATTTACCTTTATTACAT+CGG 0.515702 1_4:+43909444 None:intergenic
GATTGTACATCAATCAAAGA+AGG 0.516238 1_4:-43904960 Msa0164420:three_prime_UTR
TATACCATTTCGAGCAGCCT+CGG 0.519066 1_4:+43909486 None:intergenic
AGCCCTCACAAGATCTATGC+TGG 0.520202 1_4:-43913734 Msa0164420:CDS
CAGGAAGCCTTCATCTCCTC+CGG 0.520439 1_4:-43913374 Msa0164420:CDS
GCAAGATGAGCCGACTTGCA+TGG 0.520566 1_4:+43906186 None:intergenic
GCAAGATGAGCCGACTTGCA+TGG 0.520566 1_4:+43909586 None:intergenic
CATTGTATGTGGCGTGATCA+CGG 0.522413 1_4:-43905300 Msa0164420:three_prime_UTR
GTGATGGTTAACGGGGCAAT+CGG 0.523894 1_4:+43908597 None:intergenic
TGGAGCGTCTCCAGCCGAAA+CGG 0.524969 1_4:-43907170 Msa0164420:three_prime_UTR
TGTTACAATGGAGAGGGTGG+AGG 0.525866 1_4:-43914591 Msa0164420:CDS
AACTAATTTCATGTTTGGAT+AGG 0.526411 1_4:-43905028 Msa0164420:three_prime_UTR
GCTGAATGTCTTCGCCAACT+AGG 0.528082 1_4:-43908535 Msa0164420:three_prime_UTR
CAATACAGCTCCTTGTGGTA+CGG 0.528718 1_4:-43910545 Msa0164420:three_prime_UTR
AATGAAGGAGGTGGATGAAG+AGG 0.529395 1_4:+43915347 None:intergenic
TTATTTGGAATAAGCAAATG+AGG 0.529682 1_4:-43913307 Msa0164420:intron
AAGCAGAATCAACCCAATCA+AGG 0.531753 1_4:-43915229 Msa0164420:CDS
TCTATGCTGGAAACCTTGGT+TGG 0.532571 1_4:-43913721 Msa0164420:CDS
GCGGCAGTGGAGAAGTAGGT+CGG 0.532926 1_4:+43908641 None:intergenic
AAAAGCGTTAAAATTTGCAA+TGG 0.533063 1_4:-43908716 Msa0164420:three_prime_UTR
TGTACAGACAGTTGGAGGTA+GGG 0.536228 1_4:-43913837 Msa0164420:intron
TGCGTTTGTTACAATGGAGA+GGG 0.540835 1_4:-43914597 Msa0164420:CDS
AACTGGTATAATGAGCATAT+GGG 0.540901 1_4:-43906073 Msa0164420:three_prime_UTR
TTGTACAGACAGTTGGAGGT+AGG 0.542248 1_4:-43913838 Msa0164420:intron
TTCATCTGCATTTATAAGCA+AGG 0.542858 1_4:-43907083 Msa0164420:intron
TGAATCTTCATTTATATGCA+AGG 0.542894 1_4:-43910488 Msa0164420:intron
ATGCTCAAAACTTCTCTCCA+TGG 0.542946 1_4:-43908397 Msa0164420:three_prime_UTR
TATTGTTACTGAAGGGTCGA+AGG 0.544356 1_4:-43905816 Msa0164420:three_prime_UTR
AATTGAGGGATTAAATTGAA+GGG 0.544760 1_4:+43915377 None:intergenic
GCAGCCTCGTCTGATGGCCA+TGG 0.544803 1_4:+43906099 None:intergenic
AGCTTCTTATTGTTACTGAA+GGG 0.544876 1_4:-43905823 Msa0164420:three_prime_UTR
AAAATATTAAGGTATTGGGT+GGG 0.546449 1_4:-43907795 Msa0164420:three_prime_UTR
GAAAATATTAAGGTATTGGG+TGG 0.547701 1_4:-43907796 Msa0164420:three_prime_UTR
TTAAAGGCACCTTCTTGATG+AGG 0.548253 1_4:+43906339 None:intergenic
CTTCAAGTTTGTGCGCCTCG+TGG 0.548505 1_4:-43907989 Msa0164420:three_prime_UTR
ATGAAGGAGGTGGATGAAGA+GGG 0.548537 1_4:+43915348 None:intergenic
ATGTGTAACAAAAGCTAATG+TGG 0.552274 1_4:+43909840 None:intergenic
TCTAATTGTTACTGAAGGGT+CGG 0.554024 1_4:-43909218 Msa0164420:three_prime_UTR
AGTTGGCATCTCTAAGTTGG+GGG 0.556296 1_4:-43907107 Msa0164420:three_prime_UTR
TCCTCATGGAATGAAAATGA+AGG 0.556417 1_4:+43915332 None:intergenic
ACCAGTGCTTGCACTAGCCA+TGG 0.557085 1_4:+43915508 None:intergenic
AGCTTCTAATTGTTACTGAA+GGG 0.558772 1_4:-43909222 Msa0164420:three_prime_UTR
TGTCTCTTTCGAAACTGCTG+AGG 0.563295 1_4:-43913591 Msa0164420:CDS
TGGCTCGTCAATCAAACTGA+TGG 0.563370 1_4:+43906206 None:intergenic
TGGCTCGTCAATCAAACTGA+TGG 0.563370 1_4:+43909606 None:intergenic
CGAAACTGCTGAGGATGTAG+AGG 0.566347 1_4:-43913582 Msa0164420:CDS
GTGGAGAAGTAGGTCGGGAG+TGG 0.566817 1_4:+43908647 None:intergenic
AGATGAATTTGGGTATATGA+TGG 0.568329 1_4:-43909926 Msa0164420:three_prime_UTR
TTCCCAGAAGTGCCCAAAGT+AGG 0.569809 1_4:-43913800 Msa0164420:CDS
TTGTTGTTGCTGTTCTGTGT+GGG 0.570534 1_4:+43915414 None:intergenic
ACAGCCAAATTCAGTCGTAA+AGG 0.572484 1_4:+43913403 None:intergenic
ACCCGAGTTTGAAAAGGTGA+TGG 0.572816 1_4:+43908581 None:intergenic
CAAGGAGCTGTATTGAAAGC+AGG 0.573333 1_4:+43910553 None:intergenic
TGATCATAACCTCATCAAGC+AGG 0.573362 1_4:-43909743 Msa0164420:intron
TGGAATGAAAATGAAGGAGG+TGG 0.573591 1_4:+43915338 None:intergenic
GGTGTCAATGTTAAACCTGT+TGG 0.574637 1_4:-43908919 Msa0164420:three_prime_UTR
AGTGCCCAAAGTAGGCAAAA+GGG 0.576216 1_4:-43913792 Msa0164420:CDS
AGTTGGCATCTCTAAGTTGG+GGG 0.577772 1_4:-43910512 Msa0164420:three_prime_UTR
CGTGATCACGCCACATACAA+TGG 0.578228 1_4:+43905301 None:intergenic
AACAAATGCATCACCAACAC+CGG 0.579119 1_4:+43908891 None:intergenic
ATTGTACATCAATCAAAGAA+GGG 0.579787 1_4:-43904959 Msa0164420:three_prime_UTR
GAGTGACTAACCTTCTGACT+TGG 0.580249 1_4:-43905150 Msa0164420:three_prime_UTR
AAAGGCTTCTCTAAGATCCT+GGG 0.581121 1_4:+43913688 None:intergenic
CTCCAACAAAACAAGCGGAC+TGG 0.581954 1_4:-43907239 Msa0164420:three_prime_UTR
GTTTGGTTTGAAGGCAGACA+AGG 0.583084 1_4:-43908560 Msa0164420:three_prime_UTR
AATAGATTTCGTGCCAACAG+TGG 0.584476 1_4:-43910599 Msa0164420:intron
TGGTTGGGATATGACTTCCC+AGG 0.584520 1_4:-43913705 Msa0164420:CDS
GTTGTTGTTGCTGTTCTGTG+TGG 0.585304 1_4:+43915413 None:intergenic
GTTGTCCTCTACAAATTCAA+AGG 0.585855 1_4:-43908081 Msa0164420:three_prime_UTR
ATTGTTACTGAAGGGTCGAA+GGG 0.587847 1_4:-43905815 Msa0164420:three_prime_UTR
GATGTTGTACAGACAGTTGG+AGG 0.588100 1_4:-43913842 Msa0164420:intron
TCCTTGTGGTACGGCAAACG+TGG 0.588152 1_4:-43910536 Msa0164420:three_prime_UTR
TTGCGTTTGTTACAATGGAG+AGG 0.591751 1_4:-43914598 Msa0164420:CDS
ACCATGGCTAGTGCAAGCAC+TGG 0.593359 1_4:-43915509 Msa0164420:CDS
TTAAAGGCACCTGCTTGATG+AGG 0.594136 1_4:+43909734 None:intergenic
GTTCCTTTCGTAGACGACCC+TGG 0.594290 1_4:+43913640 None:intergenic
TCAGAAGGTTAGTCACTCTA+CGG 0.594701 1_4:+43905155 None:intergenic
ATAGATTTCGTGCCAACAGT+GGG 0.595326 1_4:-43910598 Msa0164420:intron
TGGGAAGTTAAAGGAAATGG+AGG 0.597587 1_4:+43915433 None:intergenic
ATTGATGTACAATCACAAAG+TGG 0.598110 1_4:+43904969 None:intergenic
AGGCACCTTTGAATTTGTAG+AGG 0.598612 1_4:+43908076 None:intergenic
TGATCATAACCTCATCAAGA+AGG 0.598780 1_4:-43906348 Msa0164420:intron
TTTGTAGAGGACAACAGCCA+TGG 0.599212 1_4:+43908089 None:intergenic
ATAAACTGTTTGAACACCAT+CGG 0.599951 1_4:+43908039 None:intergenic
GCTGTCCAGGCAAGCAACCA+AGG 0.601052 1_4:-43907673 Msa0164420:intron
TTTCCAGCATAGATCTTGTG+AGG 0.601847 1_4:+43913731 None:intergenic
TTCTAATGCCAGAACCACGT+TGG 0.603258 1_4:-43906459 Msa0164420:three_prime_UTR
GACATCAAAACCAAGTCAGA+AGG 0.605404 1_4:+43905140 None:intergenic
TTGTATGTGGCGTGATCACG+GGG 0.606303 1_4:-43905298 Msa0164420:three_prime_UTR
GACATCACAAATAGAAGCAG+AGG 0.606453 1_4:-43914623 Msa0164420:CDS
GAATTACCTCGAAAATACTT+GGG 0.606713 1_4:+43908839 None:intergenic
CGAATTTGAGATTGACACCA+TGG 0.607928 1_4:-43906116 Msa0164420:three_prime_UTR
GACACTATGGCCATCAGCCG+AGG 0.608512 1_4:-43909503 Msa0164420:three_prime_UTR
GCCACGTTTGCGGTACCACA+AGG 0.608891 1_4:+43907130 None:intergenic
GCCACGTTTGCCGTACCACA+AGG 0.608891 1_4:+43910535 None:intergenic
GTCTGAGGTTCGAGAACAGG+CGG 0.609132 1_4:+43908622 None:intergenic
TTTGTGTGGCAGGATGAGGA+AGG 0.609237 1_4:-43908745 Msa0164420:intron
GATTTCGTGCCAACAGTGGG+TGG 0.609717 1_4:-43910595 Msa0164420:three_prime_UTR
TGACTAGGATCATCAACCAC+GGG 0.611458 1_4:+43907724 None:intergenic
TGTATTGAAAGCAGGCACTT+CGG 0.611858 1_4:+43910561 None:intergenic
GGTCGAAATCTCTAATGTTG+AGG 0.612639 1_4:-43907848 Msa0164420:three_prime_UTR
CAGGTCGATGAAATTATCCA+TGG 0.613528 1_4:-43908106 Msa0164420:three_prime_UTR
TCCAAAAGCATATCAGCGCT+AGG 0.613915 1_4:+43906383 None:intergenic
CCTGTTGGCACAACCGGTGT+TGG 0.614402 1_4:-43908904 Msa0164420:three_prime_UTR
AACGTTGAGCTACTGTGACT+AGG 0.617081 1_4:+43907709 None:intergenic
AGGAAAAGTTGAAGAGTCTG+TGG 0.620276 1_4:+43915468 None:intergenic
TCCTTGTGGTACCGCAAACG+TGG 0.620522 1_4:-43907131 Msa0164420:three_prime_UTR
ATTGAAACCTGCAATATGAA+GGG 0.620850 1_4:+43908373 None:intergenic
AAATGAATGTGGGTATATGT+TGG 0.621347 1_4:-43906531 Msa0164420:three_prime_UTR
GTTGGCATCTCTAAGTTGGG+GGG 0.621474 1_4:-43907106 Msa0164420:three_prime_UTR
TAAGCCTGATTGCTCAGCAA+AGG 0.625819 1_4:+43913670 None:intergenic
GAAAGCTCCAACAAAACAAG+CGG 0.627040 1_4:-43907244 Msa0164420:three_prime_UTR
AGAGTCTTTAGCGATTCTCA+AGG 0.627558 1_4:+43906161 None:intergenic
AGAGTCTTTAGCGATTCTCA+AGG 0.627558 1_4:+43909561 None:intergenic
TTCCAGCATAGATCTTGTGA+GGG 0.627663 1_4:+43913732 None:intergenic
GTGCCAGGGTCGTCTACGAA+AGG 0.628572 1_4:-43913643 Msa0164420:CDS
GCTTTCAATACAGCTCCTTG+TGG 0.629231 1_4:-43910550 Msa0164420:three_prime_UTR
GAATTACCTCGAAAATACTT+GGG 0.629303 1_4:+43905439 None:intergenic
GGTACGGCAAACGTGGCAGT+TGG 0.629505 1_4:-43910529 Msa0164420:three_prime_UTR
GAAAGAAGTTCTAAAGCCCG+TGG 0.629619 1_4:-43907740 Msa0164420:three_prime_UTR
CCAAATTCAGTCGTAAAGGT+CGG 0.632704 1_4:+43913407 None:intergenic
CCTGCAATATGAAGGGACCA+TGG 0.635323 1_4:+43908380 None:intergenic
AGAGACACTCCACCCACTGT+TGG 0.636184 1_4:+43910586 None:intergenic
TCTAATGTTGAGGTGAGACG+TGG 0.639467 1_4:-43907838 Msa0164420:three_prime_UTR
ATGTGGCGTGATCACGGGGA+CGG 0.639580 1_4:-43905294 Msa0164420:intron
TCTGTGTCATATATCTTATG+GGG 0.639945 1_4:-43904851 Msa0164420:three_prime_UTR
GACACCATGGCCATCAGACG+AGG 0.640375 1_4:-43906103 Msa0164420:three_prime_UTR
TATGATGTTGTACAGACAGT+TGG 0.641337 1_4:-43913845 Msa0164420:intron
GTTTGTTACAATGGAGAGGG+TGG 0.643170 1_4:-43914594 Msa0164420:CDS
ATCAGGCTTACTGAGTGCCA+GGG 0.645982 1_4:-43913657 Msa0164420:CDS
TGAATGTCTTCGCCAACTAG+GGG 0.648187 1_4:-43908533 Msa0164420:three_prime_UTR
GTTGGCATCTCTAAGTTGGG+GGG 0.649597 1_4:-43910511 Msa0164420:three_prime_UTR
GATTGACGAGCCATGCAAGT+CGG 0.649771 1_4:-43906196 Msa0164420:three_prime_UTR
GATTGACGAGCCATGCAAGT+CGG 0.649771 1_4:-43909596 Msa0164420:three_prime_UTR
ACGGGGCAATCGGAAGTCTG+AGG 0.649776 1_4:+43908607 None:intergenic
ACTACCACAAGAATTGAGAT+CGG 0.652965 1_4:+43908447 None:intergenic
GGTACCGCAAACGTGGCAGT+TGG 0.654257 1_4:-43907124 Msa0164420:three_prime_UTR
ACGAGGCGCACAAACTTGAA+GGG 0.656234 1_4:+43907991 None:intergenic
CTGATGTTCAAAATGACCGA+TGG 0.662406 1_4:-43908055 Msa0164420:three_prime_UTR
GGTTTCGTGCCATCAATGGG+TGG 0.666706 1_4:-43907190 Msa0164420:three_prime_UTR
GTTGCTTTGAGTGCTATGAA+CGG 0.670859 1_4:-43913560 Msa0164420:CDS
AAAAGTTGAAGAGTCTGTGG+TGG 0.674091 1_4:+43915471 None:intergenic
GTCGTCTACGAAAGGAACAA+CGG 0.675544 1_4:-43913635 Msa0164420:CDS
ATGTTGATACATCTGGCATG+CGG 0.677431 1_4:-43906487 Msa0164420:three_prime_UTR
ATGTTGATACATCTGGCATG+CGG 0.677431 1_4:-43909882 Msa0164420:three_prime_UTR
GGGAAGTCATATCCCAACCA+AGG 0.679543 1_4:+43913708 None:intergenic
GCTTACAAGAAAGCTCCTTG+TGG 0.682397 1_4:-43907145 Msa0164420:three_prime_UTR
TCATGGAATGAAAATGAAGG+AGG 0.686382 1_4:+43915335 None:intergenic
GTGACTAGGATCATCAACCA+CGG 0.692544 1_4:+43907723 None:intergenic
TGAAAAGGTGATGGTTAACG+GGG 0.702819 1_4:+43908590 None:intergenic
AGGAACAACGGAAAATCTCG+CGG 0.706699 1_4:-43913623 Msa0164420:CDS
TCTGTGGTGGCAGATAGGGA+AGG 0.718022 1_4:+43915484 None:intergenic
TTTGAGTGCTATGAACGGCG+TGG 0.729342 1_4:-43913555 Msa0164420:intron
AAATGTAATAAAACCCAACG+TGG 0.743732 1_4:+43906445 None:intergenic
GGGTTGTAGATATTACACCA+AGG 0.768244 1_4:-43905795 Msa0164420:intron
AAGTTGTAGATATTACACCA+AGG 0.780493 1_4:-43909194 Msa0164420:intron
GAAGAAACCTTTAATCCACG+AGG 0.804861 1_4:+43907974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAATTATATTATATTT+TGG - chr1_4:43909169-43909188 Msa0164420:intron 0.0%
!!! TTATCAATAATTTTTTTTAG+TGG - chr1_4:43908550-43908569 Msa0164420:three_prime_UTR 10.0%
!!! TTTAAATTTCTTTTGTAAAA+CGG - chr1_4:43908681-43908700 Msa0164420:three_prime_UTR 10.0%
!!! TATATTTCATTTTTTTAACA+AGG - chr1_4:43908883-43908902 Msa0164420:three_prime_UTR 10.0%
!!! ATTATATTAGATTAGAATTT+TGG - chr1_4:43909068-43909087 Msa0164420:intron 10.0%
!! TTAAAGTAAAATATTCAAAA+AGG + chr1_4:43909132-43909151 None:intergenic 10.0%
!!! ATATTTTCTTCAAAAAAAAA+AGG - chr1_4:43909516-43909535 Msa0164420:three_prime_UTR 10.0%
!! TTAATTTAACAATAAGAAAA+GGG + chr1_4:43910238-43910257 None:intergenic 10.0%
!!! TTTAATTTAACAATAAGAAA+AGG + chr1_4:43910239-43910258 None:intergenic 10.0%
!! ATTCATAATATATATTCTTA+AGG - chr1_4:43912152-43912171 Msa0164420:intron 10.0%
!! TTAATTTATCAATAAGAAAT+GGG + chr1_4:43913634-43913653 None:intergenic 10.0%
!!! TTTAATTTATCAATAAGAAA+TGG + chr1_4:43913635-43913654 None:intergenic 10.0%
!!! ATTAAAATTTTGCAATTTGA+GGG + chr1_4:43905343-43905362 None:intergenic 15.0%
!!! ATTTAAGATATTTTTGGTTT+TGG - chr1_4:43905634-43905653 Msa0164420:intron 15.0%
!!! TTTAAGATATTTTTGGTTTT+GGG - chr1_4:43905635-43905654 Msa0164420:intron 15.0%
!! TAAGTCAAATAAAACAAAAT+TGG + chr1_4:43905684-43905703 None:intergenic 15.0%
!!! TGTTGATTACATTTTAAATA+TGG - chr1_4:43905825-43905844 Msa0164420:three_prime_UTR 15.0%
!! AACTAAATAATTAATAAACC+AGG + chr1_4:43905957-43905976 None:intergenic 15.0%
!!! ATTATTTAGTTTTGTAATGA+TGG - chr1_4:43907165-43907184 Msa0164420:three_prime_UTR 15.0%
!! ATATAACAATGATAAGTTTA+TGG - chr1_4:43908039-43908058 Msa0164420:three_prime_UTR 15.0%
!!! TTTTTTTTTGGTTACAAAAA+AGG - chr1_4:43908321-43908340 Msa0164420:intron 15.0%
!!! TTTTTTTTGGTTACAAAAAA+GGG - chr1_4:43908322-43908341 Msa0164420:intron 15.0%
!! TATTAATTACACTTAATATG+TGG - chr1_4:43908387-43908406 Msa0164420:three_prime_UTR 15.0%
!! ATTAATTACACTTAATATGT+GGG - chr1_4:43908388-43908407 Msa0164420:three_prime_UTR 15.0%
!!! TGAGTTTATTCTTTTAAATT+GGG + chr1_4:43908743-43908762 None:intergenic 15.0%
!!! ATGAGTTTATTCTTTTAAAT+TGG + chr1_4:43908744-43908763 None:intergenic 15.0%
!!! TGTGTATATTTTTATTTGAA+GGG + chr1_4:43908856-43908875 None:intergenic 15.0%
!! AAATAAAAAAAAAAACCACT+TGG - chr1_4:43908944-43908963 Msa0164420:intron 15.0%
!! TTTAATTAAAACTTTGATCA+TGG + chr1_4:43909029-43909048 None:intergenic 15.0%
!! TTCTAATCTAATATAATTCA+AGG + chr1_4:43909065-43909084 None:intergenic 15.0%
!! GTTATAAACATATAACTTAA+AGG + chr1_4:43909213-43909232 None:intergenic 15.0%
!! TAATTTAACAATAAGAAAAG+GGG + chr1_4:43910237-43910256 None:intergenic 15.0%
!!! ATTATTTTGCTTTAAACTAT+CGG + chr1_4:43910446-43910465 None:intergenic 15.0%
!! AAAATTTACCTTTATTACAT+CGG + chr1_4:43910905-43910924 None:intergenic 15.0%
!!! ATAGGTCTTTTTTTTTTTTT+GGG + chr1_4:43914058-43914077 None:intergenic 15.0%
!! ATGATAAAAACTGAAAAGAA+TGG + chr1_4:43905241-43905260 None:intergenic 20.0%
!!! GATTAAAATTTTGCAATTTG+AGG + chr1_4:43905344-43905363 None:intergenic 20.0%
!!! TATTTTCGAATATTGATATG+TGG - chr1_4:43905551-43905570 Msa0164420:intron 20.0%
!!! ATTTTCGAATATTGATATGT+GGG - chr1_4:43905552-43905571 Msa0164420:intron 20.0%
!! TCTTAGATTAGTATATAGTA+TGG - chr1_4:43905998-43906017 Msa0164420:intron 20.0%
!! TATTCTATTATAGATGAAGA+TGG - chr1_4:43906034-43906053 Msa0164420:intron 20.0%
!!! TTCTTGTCTTATTATCATTT+TGG - chr1_4:43906128-43906147 Msa0164420:three_prime_UTR 20.0%
!!! TCTTGTCTTATTATCATTTT+GGG - chr1_4:43906129-43906148 Msa0164420:three_prime_UTR 20.0%
!!! TATCATTTTGGGTATAAATT+AGG - chr1_4:43906140-43906159 Msa0164420:three_prime_UTR 20.0%
!!! AATAAGTTGAAATCATCTTA+TGG - chr1_4:43906287-43906306 Msa0164420:intron 20.0%
!! ACTTATTAAAACTTATCAAC+TGG + chr1_4:43906321-43906340 None:intergenic 20.0%
!! CTTAAATCAAGAAAAGATAT+AGG + chr1_4:43906379-43906398 None:intergenic 20.0%
!! AAAATTTGCACAACTAATAA+TGG + chr1_4:43906837-43906856 None:intergenic 20.0%
!! CTACATCATATTATAGAATT+GGG + chr1_4:43907362-43907381 None:intergenic 20.0%
!! TCTACATCATATTATAGAAT+TGG + chr1_4:43907363-43907382 None:intergenic 20.0%
!! AGATAATAGAGATTCATTTA+AGG - chr1_4:43907489-43907508 Msa0164420:intron 20.0%
!! GATAATAGAGATTCATTTAA+GGG - chr1_4:43907490-43907509 Msa0164420:intron 20.0%
!! AATGGTTGAAAATTTGAAAA+GGG + chr1_4:43907854-43907873 None:intergenic 20.0%
!!! AAAGTGTTATATGGTATAAA+CGG + chr1_4:43907998-43908017 None:intergenic 20.0%
!!! TTATACCATATAACACTTTT+AGG - chr1_4:43907999-43908018 Msa0164420:three_prime_UTR 20.0%
!! ACTTATCATTGTTATATTAC+AGG + chr1_4:43908036-43908055 None:intergenic 20.0%
!! CAATTGATTGAAATTTAAGT+GGG + chr1_4:43908274-43908293 None:intergenic 20.0%
!! ACAATTGATTGAAATTTAAG+TGG + chr1_4:43908275-43908294 None:intergenic 20.0%
!!! AGGGTGTTTTTTTTTTTTTT+TGG - chr1_4:43908309-43908328 Msa0164420:intron 20.0%
!!! GAGTTTATTCTTTTAAATTG+GGG + chr1_4:43908742-43908761 None:intergenic 20.0%
!!! GTGTGTATATTTTTATTTGA+AGG + chr1_4:43908857-43908876 None:intergenic 20.0%
!!! TTTCATTTTTTTAACAAGGA+TGG - chr1_4:43908887-43908906 Msa0164420:three_prime_UTR 20.0%
!! TGTAAGAAAAAACAACTTAA+AGG + chr1_4:43909272-43909291 None:intergenic 20.0%
!!! AGTTGTTTTTTCTTACAAAT+TGG - chr1_4:43909275-43909294 Msa0164420:three_prime_UTR 20.0%
!!! ACGGGTTAAAAATTATTTAT+TGG + chr1_4:43909474-43909493 None:intergenic 20.0%
!!! TTTTTTAGATGGAATTTGTT+AGG - chr1_4:43909575-43909594 Msa0164420:three_prime_UTR 20.0%
!! AGTAAATACATGATATTTCT+AGG + chr1_4:43910279-43910298 None:intergenic 20.0%
!!! TTACAAGAAGTATTATTCTT+AGG + chr1_4:43910313-43910332 None:intergenic 20.0%
!! AGAAAATAATGAAATGACTT+TGG + chr1_4:43911186-43911205 None:intergenic 20.0%
!! CAATCAATTAATTAACTGAA+TGG + chr1_4:43912011-43912030 None:intergenic 20.0%
!! ATATATGTATTCAGATGAAA+AGG + chr1_4:43912413-43912432 None:intergenic 20.0%
!! TAATACAGTATAGAACATTA+TGG + chr1_4:43912877-43912896 None:intergenic 20.0%
!! CTAATTAGCATAACTTAATA+AGG - chr1_4:43912952-43912971 Msa0164420:intron 20.0%
!! AAAAATAATGTTGATACATC+TGG - chr1_4:43913852-43913871 Msa0164420:intron 20.0%
!!! CATAGGTCTTTTTTTTTTTT+TGG + chr1_4:43914059-43914078 None:intergenic 20.0%
!! CAAAAAAAAAAAAAGACCTA+TGG - chr1_4:43914057-43914076 Msa0164420:intron 20.0%
!!! TTTAATTTAATACTGATTGC+AGG - chr1_4:43914096-43914115 Msa0164420:intron 20.0%
!! TTGTAAAGTGTATTGTATAA+AGG + chr1_4:43914345-43914364 None:intergenic 20.0%
!! AGAAAATAATGAAATGACTT+TGG + chr1_4:43911186-43911205 None:intergenic 20.0%
! AATTGAGGGATTAAATTGAA+GGG + chr1_4:43904972-43904991 None:intergenic 25.0%
! TAATTGAGGGATTAAATTGA+AGG + chr1_4:43904973-43904992 None:intergenic 25.0%
! TAAAAACTGAAAAGAATGGA+AGG + chr1_4:43905237-43905256 None:intergenic 25.0%
! CATTGTTTGTTTCATATATG+AGG - chr1_4:43905258-43905277 Msa0164420:intron 25.0%
!! TCAATTTAGTTCATACTTGT+AGG - chr1_4:43905362-43905381 Msa0164420:intron 25.0%
!! CATTTTTATCAACATTGACA+TGG - chr1_4:43905468-43905487 Msa0164420:three_prime_UTR 25.0%
! ACATTTAGACCATAATGATT+TGG - chr1_4:43906057-43906076 Msa0164420:three_prime_UTR 25.0%
! GCTTAGTTGAAAATTAGTTA+GGG - chr1_4:43906092-43906111 Msa0164420:three_prime_UTR 25.0%
! ATAAGCTATTTATCCAAACA+GGG + chr1_4:43906166-43906185 None:intergenic 25.0%
! AATAAGCTATTTATCCAAAC+AGG + chr1_4:43906167-43906186 None:intergenic 25.0%
! AAACAGACCAATAAATCATT+TGG - chr1_4:43906347-43906366 Msa0164420:intron 25.0%
! AACAGACCAATAAATCATTT+GGG - chr1_4:43906348-43906367 Msa0164420:intron 25.0%
! TAGAGTTGCAATTTACAATT+TGG + chr1_4:43906430-43906449 None:intergenic 25.0%
!!! TGTATAATGTACTGTTTTTC+AGG - chr1_4:43906906-43906925 Msa0164420:intron 25.0%
!!! CCTTTATTTTGATCAATTAC+CGG + chr1_4:43906994-43907013 None:intergenic 25.0%
!! TTATTTGGAATAAGCAAATG+AGG - chr1_4:43907039-43907058 Msa0164420:intron 25.0%
! TAATATCGTTAATTGCTAGT+AGG - chr1_4:43907515-43907534 Msa0164420:intron 25.0%
! GATGTAACTTAAAATTCACA+AGG + chr1_4:43907807-43907826 None:intergenic 25.0%
! TGAAAATTTGAAAAGGGATA+AGG + chr1_4:43907848-43907867 None:intergenic 25.0%
! CAATGGTTGAAAATTTGAAA+AGG + chr1_4:43907855-43907874 None:intergenic 25.0%
! TATAAATATGAAAAGGGCAA+TGG + chr1_4:43907872-43907891 None:intergenic 25.0%
! ATGAAATAGAATGACAATGT+TGG + chr1_4:43907966-43907985 None:intergenic 25.0%
! CAATGATAAGTTTATGGAAT+TGG - chr1_4:43908045-43908064 Msa0164420:three_prime_UTR 25.0%
! AGAAATGATGTTAAAAACGA+AGG + chr1_4:43908121-43908140 None:intergenic 25.0%
!!! AGATTAGAATTTTGGAAATC+AGG - chr1_4:43909076-43909095 Msa0164420:intron 25.0%
!! TTGGTAACAAAGAAACTTAA+AGG + chr1_4:43909244-43909263 None:intergenic 25.0%
! TAAGTTTCTTTGTTACCAAT+TGG - chr1_4:43909245-43909264 Msa0164420:three_prime_UTR 25.0%
!!! TGCAATGCATTTTTTTTAGA+TGG - chr1_4:43909564-43909583 Msa0164420:three_prime_UTR 25.0%
! TGAATCTTCATTTATATGCA+AGG - chr1_4:43909858-43909877 Msa0164420:three_prime_UTR 25.0%
! TCTATGTCTATTTATTCACA+TGG - chr1_4:43909887-43909906 Msa0164420:three_prime_UTR 25.0%
! AAGATTTGAAGAATCAAACA+TGG + chr1_4:43909943-43909962 None:intergenic 25.0%
! TTAAGAAATCTGTAATGTGT+TGG - chr1_4:43909968-43909987 Msa0164420:intron 25.0%
! TAAGAAATCTGTAATGTGTT+GGG - chr1_4:43909969-43909988 Msa0164420:intron 25.0%
!! ATTGATTACACTTTTCTGAA+TGG - chr1_4:43910000-43910019 Msa0164420:intron 25.0%
! ATGGGAACGAAAAATAAATA+GGG + chr1_4:43910148-43910167 None:intergenic 25.0%
! TTGAAATGAGAAGTTATAGT+TGG + chr1_4:43910197-43910216 None:intergenic 25.0%
! TTATGAATGTGAATCTATGT+TGG - chr1_4:43910347-43910366 Msa0164420:intron 25.0%
! CAAAATAATGTTGATACATC+TGG - chr1_4:43910457-43910476 Msa0164420:intron 25.0%
! TAAACACAGATGGAAATTAA+AGG + chr1_4:43910631-43910650 None:intergenic 25.0%
! CTTAAAACCATATGTCTTTA+TGG + chr1_4:43910664-43910683 None:intergenic 25.0%
!! TAATTTAATACGGATTTTGC+AGG - chr1_4:43910696-43910715 Msa0164420:intron 25.0%
! AAATGGTATAATGAGCATTT+GGG - chr1_4:43910873-43910892 Msa0164420:intron 25.0%
!! TGATTACTAAATTTTTGTGC+AGG - chr1_4:43911384-43911403 Msa0164420:intron 25.0%
!! AATTTTTGTGCAGGATTTTA+AGG - chr1_4:43911393-43911412 Msa0164420:intron 25.0%
!! ATTTTTGTGCAGGATTTTAA+GGG - chr1_4:43911394-43911413 Msa0164420:intron 25.0%
!!! TTGCAAATTTTAACGCTTTT+TGG + chr1_4:43911630-43911649 None:intergenic 25.0%
!!! AAAAGCGTTAAAATTTGCAA+TGG - chr1_4:43911630-43911649 Msa0164420:intron 25.0%
!! AAAGCGTTAAAATTTGCAAT+GGG - chr1_4:43911631-43911650 Msa0164420:intron 25.0%
!!! AGTGATTGCAATGTTTTTTT+TGG + chr1_4:43911671-43911690 None:intergenic 25.0%
!!! AGCATTTTTTCATCAATATG+AGG + chr1_4:43911934-43911953 None:intergenic 25.0%
!!! TTTTTTTTGAATTTGCTCCA+TGG - chr1_4:43912094-43912113 Msa0164420:intron 25.0%
! TAAATTATGCTCCTATATGA+TGG - chr1_4:43912187-43912206 Msa0164420:intron 25.0%
! TCCTGAAAATATTAAGGTAT+TGG - chr1_4:43912546-43912565 Msa0164420:intron 25.0%
!! CCTGAAAATATTAAGGTATT+GGG - chr1_4:43912547-43912566 Msa0164420:intron 25.0%
!!! AAAATATTAAGGTATTGGGT+GGG - chr1_4:43912551-43912570 Msa0164420:intron 25.0%
!! GTAATCTAATCTAGAACATA+AGG + chr1_4:43912704-43912723 None:intergenic 25.0%
! AATAGAAGAATCCTTTCATA+CGG + chr1_4:43912927-43912946 None:intergenic 25.0%
!! AACTTAATAAGGATGTTTTG+TGG - chr1_4:43912963-43912982 Msa0164420:intron 25.0%
!!! TGTTTTGGTGAAATGTTAAT+AGG - chr1_4:43909730-43909749 Msa0164420:intron 25.0%
! GTGCATCTATATCTATTTAT+TGG - chr1_4:43913287-43913306 Msa0164420:intron 25.0%
! TCTATATCTATTTATTGGCA+TGG - chr1_4:43913292-43913311 Msa0164420:intron 25.0%
! TATTTATTGGCATGGTTATT+TGG - chr1_4:43913300-43913319 Msa0164420:intron 25.0%
! AGATTTGAACAAATCAAACA+TGG + chr1_4:43913351-43913370 None:intergenic 25.0%
! TTAAGAAATCTGTAATGTGT+TGG - chr1_4:43909968-43909987 Msa0164420:intron 25.0%
! TAAGAAATCTGTAATGTGTT+GGG - chr1_4:43909969-43909988 Msa0164420:intron 25.0%
!! ATTGATTACACTTTTCTGAA+TGG - chr1_4:43910000-43910019 Msa0164420:intron 25.0%
! TAAAGTGGTTTCTATTCAAT+GGG + chr1_4:43913563-43913582 None:intergenic 25.0%
! TTAAAGTGGTTTCTATTCAA+TGG + chr1_4:43913564-43913583 None:intergenic 25.0%
! AAGTAAATCATGATATCTCT+AGG + chr1_4:43913675-43913694 None:intergenic 25.0%
!!! TTACAAGAAGTACTATTCTT+CGG + chr1_4:43913708-43913727 None:intergenic 25.0%
!! GTAATAGTATTCTGCATTTT+AGG - chr1_4:43913724-43913743 Msa0164420:CDS 25.0%
! TAAACAGAGATGGAAATTAA+AGG + chr1_4:43914026-43914045 None:intergenic 25.0%
!! GTACATTTTATAAACAGAGA+TGG + chr1_4:43914036-43914055 None:intergenic 25.0%
! TAAGAAAATAACACTTCAGA+TGG + chr1_4:43911003-43911022 None:intergenic 25.0%
!!! GATGAGATTACTTTTTTGAT+TGG - chr1_4:43914441-43914460 Msa0164420:intron 25.0%
! AATACAACATCATCATCATA+AGG + chr1_4:43914477-43914496 None:intergenic 25.0%
! AAAAAAAAGTTGTGAGTGTT+TGG - chr1_4:43914961-43914980 Msa0164420:intron 25.0%
!!! TTTGATGAAGTTATTTTGTG+TGG - chr1_4:43914985-43915004 Msa0164420:intron 25.0%
!! TGAAATTAGTTTCTTCACAT+TGG + chr1_4:43915309-43915328 None:intergenic 25.0%
! GAAGAAACTAATTTCATGTT+TGG - chr1_4:43915313-43915332 Msa0164420:CDS 25.0%
! AACTAATTTCATGTTTGGAT+AGG - chr1_4:43915318-43915337 Msa0164420:CDS 25.0%
! ATTGTACATCAATCAAAGAA+GGG - chr1_4:43915387-43915406 Msa0164420:CDS 25.0%
! AATCTGTGTCATATATCTTA+TGG - chr1_4:43915493-43915512 Msa0164420:CDS 25.0%
! ATCTGTGTCATATATCTTAT+GGG - chr1_4:43915494-43915513 Msa0164420:CDS 25.0%
!! ATTGAAGGGTTTTGTAGAAA+TGG + chr1_4:43904958-43904977 None:intergenic 30.0%
TGGGAAGAAGATAATGAAAA+TGG + chr1_4:43905164-43905183 None:intergenic 30.0%
TTCATTATCTTCTTCCCAAT+TGG - chr1_4:43905166-43905185 Msa0164420:three_prime_UTR 30.0%
! TTTAGTTCCTCATTCCAAAA+TGG - chr1_4:43905316-43905335 Msa0164420:three_prime_UTR 30.0%
TTAGTTCATACTTGTAGGAT+TGG - chr1_4:43905367-43905386 Msa0164420:intron 30.0%
GATAAAACCCTACAATTTCA+AGG - chr1_4:43905584-43905603 Msa0164420:intron 30.0%
AGTTTGTCCTTGAAATTGTA+GGG + chr1_4:43905594-43905613 None:intergenic 30.0%
AAGTTTGTCCTTGAAATTGT+AGG + chr1_4:43905595-43905614 None:intergenic 30.0%
GAATCAATTCGAATGTTTGA+TGG - chr1_4:43905786-43905805 Msa0164420:intron 30.0%
GATTAAGCACCAAATCATTA+TGG + chr1_4:43906069-43906088 None:intergenic 30.0%
!! AATGATTTGGTGCTTAATCA+AGG - chr1_4:43906070-43906089 Msa0164420:three_prime_UTR 30.0%
GGCTTAGTTGAAAATTAGTT+AGG - chr1_4:43906091-43906110 Msa0164420:three_prime_UTR 30.0%
AAGACAAGAAAACAAGATAC+TGG + chr1_4:43906118-43906137 None:intergenic 30.0%
GTATCTCCCAAATGATTTAT+TGG + chr1_4:43906357-43906376 None:intergenic 30.0%
!! ATCTTATTCAACTAGCTTTC+TGG - chr1_4:43906403-43906422 Msa0164420:three_prime_UTR 30.0%
GAGTTCAATTCTAATGGTAA+TGG - chr1_4:43906477-43906496 Msa0164420:three_prime_UTR 30.0%
!!! ATAATGTACTGTTTTTCAGG+AGG - chr1_4:43906909-43906928 Msa0164420:intron 30.0%
!!! TTATTTTGATCAATTACCGG+AGG + chr1_4:43906991-43907010 None:intergenic 30.0%
CCGGTAATTGATCAAAATAA+AGG - chr1_4:43906991-43907010 Msa0164420:intron 30.0%
!! AGGAAATAATGTTGATAGCT+TGG - chr1_4:43907011-43907030 Msa0164420:intron 30.0%
GATAGCTTGGAAATGTTATT+TGG - chr1_4:43907024-43907043 Msa0164420:intron 30.0%
GACAGAAAAATATGACATGA+GGG + chr1_4:43907100-43907119 None:intergenic 30.0%
TGACAGAAAAATATGACATG+AGG + chr1_4:43907101-43907120 None:intergenic 30.0%
CTGTCAATTACTAATCATGT+TGG - chr1_4:43907115-43907134 Msa0164420:three_prime_UTR 30.0%
GTAACATACCGATCTATAAT+CGG - chr1_4:43907285-43907304 Msa0164420:intron 30.0%
!! CTGCATTCATTACTTTTCAA+AGG + chr1_4:43907390-43907409 None:intergenic 30.0%
TACAGTCTTTCATTAAGCAA+TGG - chr1_4:43907449-43907468 Msa0164420:intron 30.0%
TAGCAAACAATTTCCATGTA+AGG - chr1_4:43907688-43907707 Msa0164420:three_prime_UTR 30.0%
AATTTCCATGTAAGGACAAA+AGG - chr1_4:43907696-43907715 Msa0164420:three_prime_UTR 30.0%
ATTTCCATGTAAGGACAAAA+GGG - chr1_4:43907697-43907716 Msa0164420:three_prime_UTR 30.0%
TTGTCAAGAAAGTAATCTAG+AGG - chr1_4:43907741-43907760 Msa0164420:three_prime_UTR 30.0%
! AAGGATACTTTTGTCTAACA+GGG + chr1_4:43907829-43907848 None:intergenic 30.0%
! TAAGGATACTTTTGTCTAAC+AGG + chr1_4:43907830-43907849 None:intergenic 30.0%
AGATGATTAAGAAAGAGAAG+AGG + chr1_4:43907903-43907922 None:intergenic 30.0%
!! CCAAACCTAAAAGTGTTATA+TGG + chr1_4:43908007-43908026 None:intergenic 30.0%
!!! CCATATAACACTTTTAGGTT+TGG - chr1_4:43908004-43908023 Msa0164420:three_prime_UTR 30.0%
! ATAAGGATCTTCTACCTTTT+GGG + chr1_4:43908190-43908209 None:intergenic 30.0%
TATTCATTGGACCAATTCAT+AGG + chr1_4:43908217-43908236 None:intergenic 30.0%
ATTGGTCCAATGAATATATG+TGG - chr1_4:43908221-43908240 Msa0164420:intron 30.0%
TTGGTCCAATGAATATATGT+GGG - chr1_4:43908222-43908241 Msa0164420:intron 30.0%
!! AATTGTAGAGAGTGTCAAAA+AGG - chr1_4:43908289-43908308 Msa0164420:intron 30.0%
!! ATTGTAGAGAGTGTCAAAAA+GGG - chr1_4:43908290-43908309 Msa0164420:intron 30.0%
AAACTAACATGCATATTGCT+AGG - chr1_4:43908429-43908448 Msa0164420:three_prime_UTR 30.0%
AACTAACATGCATATTGCTA+GGG - chr1_4:43908430-43908449 Msa0164420:three_prime_UTR 30.0%
! TTCTTTTAAATTGGGGAAAG+AGG + chr1_4:43908735-43908754 None:intergenic 30.0%
AAACAACTTAAAGGACCAAT+TGG + chr1_4:43909263-43909282 None:intergenic 30.0%
!! AAGCACTTTTTAACGAAGTT+GGG + chr1_4:43909344-43909363 None:intergenic 30.0%
!! TAAGCACTTTTTAACGAAGT+TGG + chr1_4:43909345-43909364 None:intergenic 30.0%
TAGACCGTTTAACATTAAGA+TGG - chr1_4:43909365-43909384 Msa0164420:intron 30.0%
CCTACCATCTTAATGTTAAA+CGG + chr1_4:43909372-43909391 None:intergenic 30.0%
! TTTGATGTCATAAGCTCTTT+TGG + chr1_4:43909396-43909415 None:intergenic 30.0%
TACCATATCAATGATCTTAC+GGG + chr1_4:43909492-43909511 None:intergenic 30.0%
CTACCATATCAATGATCTTA+CGG + chr1_4:43909493-43909512 None:intergenic 30.0%
CTTCAAAAAAAAAAGGCAAG+CGG - chr1_4:43909523-43909542 Msa0164420:three_prime_UTR 30.0%
AACCTAATAAAGCAAATGAG+CGG - chr1_4:43909611-43909630 Msa0164420:three_prime_UTR 30.0%
CTTGTTACTATCTAATCTAC+AGG - chr1_4:43909913-43909932 Msa0164420:three_prime_UTR 30.0%
TATGTGTGTGTTTCAATTCA+AGG - chr1_4:43910023-43910042 Msa0164420:intron 30.0%
GAATGTAACATTGTCATGTT+TGG - chr1_4:43910079-43910098 Msa0164420:intron 30.0%
GATGGGAACGAAAAATAAAT+AGG + chr1_4:43910149-43910168 None:intergenic 30.0%
TAAAGTGGTGTCTATTTGAT+GGG + chr1_4:43910166-43910185 None:intergenic 30.0%
TTAAAGTGGTGTCTATTTGA+TGG + chr1_4:43910167-43910186 None:intergenic 30.0%
!!! TAGTTGGTTAGGTTTTAAAG+TGG + chr1_4:43910181-43910200 None:intergenic 30.0%
ATGAGAAGTTATAGTTGGTT+AGG + chr1_4:43910192-43910211 None:intergenic 30.0%
ACAATAAGAAAAGGGGAAAA+AGG + chr1_4:43910230-43910249 None:intergenic 30.0%
AGATGAATTTGGGTATATGA+TGG - chr1_4:43910420-43910439 Msa0164420:intron 30.0%
ATGTGTAACAAAAGCTAATG+TGG + chr1_4:43910509-43910528 None:intergenic 30.0%
TTTGTTACACATAGAGCTAA+TGG - chr1_4:43910517-43910536 Msa0164420:three_prime_UTR 30.0%
! GCATATCAGATTTAGGATTT+CGG + chr1_4:43910564-43910583 None:intergenic 30.0%
! CCACATTTTATAAACACAGA+TGG + chr1_4:43910641-43910660 None:intergenic 30.0%
CCATCTGTGTTTATAAAATG+TGG - chr1_4:43910638-43910657 Msa0164420:intron 30.0%
!! GGAACCATAATGGAATATTT+TGG + chr1_4:43910722-43910741 None:intergenic 30.0%
CATAGTGTCAATCTCAAATT+CGG + chr1_4:43910832-43910851 None:intergenic 30.0%
GAAATGGTATAATGAGCATT+TGG - chr1_4:43910872-43910891 Msa0164420:intron 30.0%
!!! GATGAGATTACTTTTTTGAC+TGG - chr1_4:43911042-43911061 Msa0164420:intron 30.0%
AATACAACATCGTCATCATA+AGG + chr1_4:43911078-43911097 None:intergenic 30.0%
CAATTAGAAGCTTGAGATTA+GGG + chr1_4:43911116-43911135 None:intergenic 30.0%
ACAATTAGAAGCTTGAGATT+AGG + chr1_4:43911117-43911136 None:intergenic 30.0%
AAGCTTCTAATTGTTACTGA+AGG - chr1_4:43911123-43911142 Msa0164420:intron 30.0%
AGCTTCTAATTGTTACTGAA+GGG - chr1_4:43911124-43911143 Msa0164420:intron 30.0%
AAGTTGTAGATATTACACCA+AGG - chr1_4:43911152-43911171 Msa0164420:intron 30.0%
GAATTACCTCGAAAATACTT+GGG + chr1_4:43911510-43911529 None:intergenic 30.0%
TGAATTACCTCGAAAATACT+TGG + chr1_4:43911511-43911530 None:intergenic 30.0%
!! GTTGATGAAGTTATTTTGTG+TGG - chr1_4:43911587-43911606 Msa0164420:intron 30.0%
! TTTGAAAAGGTGATGGTTAA+CGG + chr1_4:43911761-43911780 None:intergenic 30.0%
ATTGAAACCTGCAATATGAA+GGG + chr1_4:43911976-43911995 None:intergenic 30.0%
AATTGAAACCTGCAATATGA+AGG + chr1_4:43911977-43911996 None:intergenic 30.0%
TACAACTGTTTGTTTAAGAG+TGG - chr1_4:43912122-43912141 Msa0164420:intron 30.0%
ATAAACTGTTTGAACACCAT+CGG + chr1_4:43912310-43912329 None:intergenic 30.0%
! TCTGGTTCCTGAAAATATTA+AGG - chr1_4:43912540-43912559 Msa0164420:intron 30.0%
! CCCAATACCTTAATATTTTC+AGG + chr1_4:43912550-43912569 None:intergenic 30.0%
!! GAAAATATTAAGGTATTGGG+TGG - chr1_4:43912550-43912569 Msa0164420:intron 30.0%
!! AAATATTAAGGTATTGGGTG+GGG - chr1_4:43912552-43912571 Msa0164420:intron 30.0%
! AGATTGATTGGTTACATCAT+AGG + chr1_4:43912758-43912777 None:intergenic 30.0%
GCAAGAATACTAAGATTGAT+TGG + chr1_4:43912770-43912789 None:intergenic 30.0%
CTCTTTATGTATGTGTTTCA+CGG - chr1_4:43912805-43912824 Msa0164420:intron 30.0%
ATAGAAGAATCCTTTCATAC+GGG + chr1_4:43912926-43912945 None:intergenic 30.0%
!! GTTGGTTCAAATTCTTTTAC+TGG + chr1_4:43913043-43913062 None:intergenic 30.0%
TTCATCTGCATTTATAAGCA+AGG - chr1_4:43913263-43913282 Msa0164420:intron 30.0%
GAATGTAACATTGTCATGTT+TGG - chr1_4:43910079-43910098 Msa0164420:intron 30.0%
ATCAATAAGAAATGGGAGAA+GGG + chr1_4:43913627-43913646 None:intergenic 30.0%
TATCAATAAGAAATGGGAGA+AGG + chr1_4:43913628-43913647 None:intergenic 30.0%
TTAGGAATGTGAATCTATGT+TGG - chr1_4:43913742-43913761 Msa0164420:CDS 30.0%
AACCTAAAACACAAATGGTA+AGG + chr1_4:43913790-43913809 None:intergenic 30.0%
!! TTACCATTTGTGTTTTAGGT+TGG - chr1_4:43913789-43913808 Msa0164420:CDS 30.0%
AAATGAATGTGGGTATATGT+TGG - chr1_4:43913815-43913834 Msa0164420:CDS 30.0%
AAATGTAATAAAACCCAACG+TGG + chr1_4:43913904-43913923 None:intergenic 30.0%
!!! ACGTTGGGTTTTATTACATT+TGG - chr1_4:43913903-43913922 Msa0164420:intron 30.0%
ATTATACAGACTTAGACCAT+AGG + chr1_4:43914076-43914095 None:intergenic 30.0%
!! GGAACCATAATGGAATATTT+TGG + chr1_4:43910722-43910741 None:intergenic 30.0%
AACTGGTATAATGAGCATAT+GGG - chr1_4:43914273-43914292 Msa0164420:intron 30.0%
!!! GAGATTACTTTTTTGATTGG+TGG - chr1_4:43914444-43914463 Msa0164420:intron 30.0%
!!! ATTACTTTTTTGATTGGTGG+TGG - chr1_4:43914447-43914466 Msa0164420:intron 30.0%
CAATAAGAAGCTTGAGATTA+GGG + chr1_4:43914515-43914534 None:intergenic 30.0%
ACAATAAGAAGCTTGAGATT+AGG + chr1_4:43914516-43914535 None:intergenic 30.0%
AAGCTTCTTATTGTTACTGA+AGG - chr1_4:43914522-43914541 Msa0164420:intron 30.0%
AGCTTCTTATTGTTACTGAA+GGG - chr1_4:43914523-43914542 Msa0164420:intron 30.0%
TGATTACTAAATGTTTGTGC+AGG - chr1_4:43914784-43914803 Msa0164420:intron 30.0%
GATTACTAAATGTTTGTGCA+GGG - chr1_4:43914785-43914804 Msa0164420:intron 30.0%
GAATTACCTCGAAAATACTT+GGG + chr1_4:43911510-43911529 None:intergenic 30.0%
!! CAAGTATTTTCGAGGTAATT+CGG - chr1_4:43911509-43911528 Msa0164420:intron 30.0%
! TTATGTTTTGCCATTGTATG+TGG - chr1_4:43915035-43915054 Msa0164420:intron 30.0%
TGATTAACATTCACAGCATT+TGG - chr1_4:43915277-43915296 Msa0164420:CDS 30.0%
ATTGATGTACAATCACAAAG+TGG + chr1_4:43915380-43915399 None:intergenic 30.0%
GATTGTACATCAATCAAAGA+AGG - chr1_4:43915386-43915405 Msa0164420:CDS 30.0%
TCTGTGTCATATATCTTATG+GGG - chr1_4:43915495-43915514 Msa0164420:CDS 30.0%
! TATATCTTATGGGGTCTTTT+AGG - chr1_4:43915504-43915523 Msa0164420:CDS 30.0%
AATGGAGGAATGAGTAGTAA+AGG + chr1_4:43904901-43904920 None:intergenic 35.0%
GAAGAGGGTTGAATAATTGA+GGG + chr1_4:43904986-43905005 None:intergenic 35.0%
TGAAGAGGGTTGAATAATTG+AGG + chr1_4:43904987-43905006 None:intergenic 35.0%
TCATGGAATGAAAATGAAGG+AGG + chr1_4:43905014-43905033 None:intergenic 35.0%
! TCCTTCATTTTCATTCCATG+AGG - chr1_4:43905013-43905032 Msa0164420:three_prime_UTR 35.0%
TCCTCATGGAATGAAAATGA+AGG + chr1_4:43905017-43905036 None:intergenic 35.0%
! TTCATTTTCATTCCATGAGG+AGG - chr1_4:43905016-43905035 Msa0164420:three_prime_UTR 35.0%
!! TTTTAGGTCTGAGTTCTGTA+AGG + chr1_4:43905093-43905112 None:intergenic 35.0%
! TTGATTCTGCTTCCTGTTTT+AGG + chr1_4:43905109-43905128 None:intergenic 35.0%
AACAAAGAGTCTCCTTGATT+GGG + chr1_4:43905132-43905151 None:intergenic 35.0%
TGGAAATGTTATATCTGTGG+AGG - chr1_4:43905208-43905227 Msa0164420:three_prime_UTR 35.0%
AATATTGATATGTGGGCTCT+AGG - chr1_4:43905559-43905578 Msa0164420:intron 35.0%
! TCAAGGACAAACTTGAGTTT+TGG - chr1_4:43905601-43905620 Msa0164420:intron 35.0%
! AGGATTTGCGTTTGTTACAA+TGG - chr1_4:43905743-43905762 Msa0164420:intron 35.0%
GATAGTGCAGGTTGTTTATA+AGG + chr1_4:43905927-43905946 None:intergenic 35.0%
CTAGCAGAGTTCAATTCTAA+TGG - chr1_4:43906471-43906490 Msa0164420:three_prime_UTR 35.0%
TATGATGTTGTACAGACAGT+TGG - chr1_4:43906501-43906520 Msa0164420:three_prime_UTR 35.0%
CAAATAGGCTCAAACTATAG+AGG - chr1_4:43906579-43906598 Msa0164420:intron 35.0%
!!! TTAGTTTTGTAATGATGGCG+AGG - chr1_4:43907170-43907189 Msa0164420:three_prime_UTR 35.0%
!!! TAGTTTTGTAATGATGGCGA+GGG - chr1_4:43907171-43907190 Msa0164420:three_prime_UTR 35.0%
! GAGCCTAAGTCTTATACAAT+CGG - chr1_4:43907198-43907217 Msa0164420:three_prime_UTR 35.0%
AAGCCGATTGTATAAGACTT+AGG + chr1_4:43907204-43907223 None:intergenic 35.0%
AGAATTGGGATATTGTTGCA+CGG + chr1_4:43907348-43907367 None:intergenic 35.0%
TTTCAGCTTTCACCAAACTA+AGG - chr1_4:43907572-43907591 Msa0164420:intron 35.0%
TATCCTAAGGTTCCTTAGTT+TGG + chr1_4:43907587-43907606 None:intergenic 35.0%
TACACTGTGAAGATATCCTA+AGG + chr1_4:43907600-43907619 None:intergenic 35.0%
! ATTTCCCTTTTGTCCTTACA+TGG + chr1_4:43907704-43907723 None:intergenic 35.0%
GATTACTTTCTTGACAACAC+AGG + chr1_4:43907738-43907757 None:intergenic 35.0%
GCTTCACTGTTGAAAGAAAA+AGG + chr1_4:43907927-43907946 None:intergenic 35.0%
ACGAAGGAAAAAAGAAGTGA+GGG + chr1_4:43908105-43908124 None:intergenic 35.0%
AACGAAGGAAAAAAGAAGTG+AGG + chr1_4:43908106-43908125 None:intergenic 35.0%
GGAAAATGTACAGTGACTTT+AGG + chr1_4:43908166-43908185 None:intergenic 35.0%
! GATAAGGATCTTCTACCTTT+TGG + chr1_4:43908191-43908210 None:intergenic 35.0%
TCCTTATCTTGCCTATGAAT+TGG - chr1_4:43908203-43908222 Msa0164420:intron 35.0%
ACCAATTCATAGGCAAGATA+AGG + chr1_4:43908207-43908226 None:intergenic 35.0%
AATGAATATATGTGGGACGT+GGG - chr1_4:43908229-43908248 Msa0164420:intron 35.0%
ACTAACATGCATATTGCTAG+GGG - chr1_4:43908431-43908450 Msa0164420:three_prime_UTR 35.0%
!!! TTAGCACCTCAAGAGTATTT+TGG + chr1_4:43908615-43908634 None:intergenic 35.0%
ATATTCAAAAAGGTAGCCCA+TGG + chr1_4:43909122-43909141 None:intergenic 35.0%
!! TTTTGGCTAAATACCTCATG+TGG - chr1_4:43909186-43909205 Msa0164420:intron 35.0%
ATAACTTAAAGGACCACATG+AGG + chr1_4:43909202-43909221 None:intergenic 35.0%
CCGTTTAACATTAAGATGGT+AGG - chr1_4:43909369-43909388 Msa0164420:intron 35.0%
AACCCGTAAGATCATTGATA+TGG - chr1_4:43909487-43909506 Msa0164420:three_prime_UTR 35.0%
AAAAAAAAAGGCAAGCGGAT+AGG - chr1_4:43909528-43909547 Msa0164420:three_prime_UTR 35.0%
ACCTAATAAAGCAAATGAGC+GGG - chr1_4:43909612-43909631 Msa0164420:three_prime_UTR 35.0%
CAAATGAGCGGGAAAAAATT+AGG - chr1_4:43909623-43909642 Msa0164420:three_prime_UTR 35.0%
AAAGGGGAAAAAGGTAGAAT+GGG + chr1_4:43910221-43910240 None:intergenic 35.0%
AAAAGGGGAAAAAGGTAGAA+TGG + chr1_4:43910222-43910241 None:intergenic 35.0%
AACCTAAAACACAGATGGTA+AGG + chr1_4:43910395-43910414 None:intergenic 35.0%
!! TTACCATCTGTGTTTTAGGT+TGG - chr1_4:43910394-43910413 Msa0164420:intron 35.0%
AACAAAAGCTAATGTGGTTC+TGG + chr1_4:43910503-43910522 None:intergenic 35.0%
TCCTAAATCTGATATGCTTC+TGG - chr1_4:43910567-43910586 Msa0164420:three_prime_UTR 35.0%
! TCCAGAAGCATATCAGATTT+AGG + chr1_4:43910571-43910590 None:intergenic 35.0%
AATGTGGCCATAAAGACATA+TGG - chr1_4:43910654-43910673 Msa0164420:intron 35.0%
CAGGCCAAAATATTCCATTA+TGG - chr1_4:43910715-43910734 Msa0164420:intron 35.0%
TCAAACTGATGGAACCATAA+TGG + chr1_4:43910732-43910751 None:intergenic 35.0%
! CGAATTTGAGATTGACACTA+TGG - chr1_4:43910830-43910849 Msa0164420:intron 35.0%
!!! GAGATTACTTTTTTGACTGG+TGG - chr1_4:43911045-43911064 Msa0164420:intron 35.0%
!!! ATTACTTTTTTGACTGGTGG+TGG - chr1_4:43911048-43911067 Msa0164420:intron 35.0%
TCTAATTGTTACTGAAGGGT+CGG - chr1_4:43911128-43911147 Msa0164420:intron 35.0%
TGCTCTTTATTCTGATGAAG+TGG - chr1_4:43911207-43911226 Msa0164420:intron 35.0%
TTGGTTGTAAAACTTGAGCA+AGG - chr1_4:43911294-43911313 Msa0164420:intron 35.0%
TGTAAAACTTGAGCAAGGTT+TGG - chr1_4:43911299-43911318 Msa0164420:intron 35.0%
AATCACTGTTAGTTGAAAGC+TGG + chr1_4:43911369-43911388 None:intergenic 35.0%
!! GATTTTAAGGGCAAAGTTAG+AGG - chr1_4:43911406-43911425 Msa0164420:intron 35.0%
!! TTGGTGATGCATTTGTTAGT+GGG - chr1_4:43911461-43911480 Msa0164420:intron 35.0%
! TTATGACCCAAGTATTTTCG+AGG - chr1_4:43911501-43911520 Msa0164420:intron 35.0%
AGAATGAAGTTGTGAGTGTT+TGG - chr1_4:43911563-43911582 Msa0164420:intron 35.0%
!! ATGAAGTTATTTTGTGTGGC+AGG - chr1_4:43911591-43911610 Msa0164420:intron 35.0%
! TTGAAAAGGTGATGGTTAAC+GGG + chr1_4:43911760-43911779 None:intergenic 35.0%
! AACCATCACCTTTTCAAACT+CGG - chr1_4:43911763-43911782 Msa0164420:intron 35.0%
CATTTAACAAATCCCCTAGT+TGG + chr1_4:43911828-43911847 None:intergenic 35.0%
!! CAACTAGGGGATTTGTTAAA+TGG - chr1_4:43911826-43911845 Msa0164420:intron 35.0%
! AAACAGATTTTCGCCTTTTG+GGG + chr1_4:43911862-43911881 None:intergenic 35.0%
! GAAACAGATTTTCGCCTTTT+GGG + chr1_4:43911863-43911882 None:intergenic 35.0%
GATCGGAAAACAGAAATTTC+TGG + chr1_4:43911885-43911904 None:intergenic 35.0%
! TTTTCCGATCTCAATTCTTG+TGG - chr1_4:43911895-43911914 Msa0164420:intron 35.0%
ACTACCACAAGAATTGAGAT+CGG + chr1_4:43911902-43911921 None:intergenic 35.0%
CAAACAGTTGTAGTAAACCA+TGG + chr1_4:43912114-43912133 None:intergenic 35.0%
GTTGTCCTCTACAAATTCAA+AGG - chr1_4:43912265-43912284 Msa0164420:intron 35.0%
GATGGTGTTCAAACAGTTTA+TGG - chr1_4:43912309-43912328 Msa0164420:intron 35.0%
! TCGTGGATTAAAGGTTTCTT+CGG - chr1_4:43912374-43912393 Msa0164420:intron 35.0%
TGCTATTCTCTCTGAGTAAA+AGG - chr1_4:43912445-43912464 Msa0164420:intron 35.0%
GCTATTCTCTCTGAGTAAAA+GGG - chr1_4:43912446-43912465 Msa0164420:intron 35.0%
AGGGATCTATTGGTATTTGT+AGG - chr1_4:43912477-43912496 Msa0164420:intron 35.0%
!! AATATTAAGGTATTGGGTGG+GGG - chr1_4:43912553-43912572 Msa0164420:intron 35.0%
TAGAACATAAGGACTTACCT+TGG + chr1_4:43912693-43912712 None:intergenic 35.0%
ATAAATACGTGTGTGAGACA+AGG - chr1_4:43912724-43912743 Msa0164420:intron 35.0%
GGAAGCTATAATAATTCTGC+CGG - chr1_4:43912826-43912845 Msa0164420:intron 35.0%
GAAGCTATAATAATTCTGCC+GGG - chr1_4:43912827-43912846 Msa0164420:intron 35.0%
AAGCTATAATAATTCTGCCG+GGG - chr1_4:43912828-43912847 Msa0164420:intron 35.0%
TAATCACAGAAATAGAACCC+CGG + chr1_4:43912848-43912867 None:intergenic 35.0%
! ACCAACAATTCATGTTTTGC+AGG - chr1_4:43913057-43913076 Msa0164420:intron 35.0%
ACCTGCAAAACATGAATTGT+TGG + chr1_4:43913061-43913080 None:intergenic 35.0%
! GTTAAAGTTCGTGCATTTTG+AGG - chr1_4:43913504-43913523 Msa0164420:intron 35.0%
TGGTTTCTATTCAATGGGAA+TGG + chr1_4:43913558-43913577 None:intergenic 35.0%
!!! CAGATGGTTAGGTTTTAAAG+TGG + chr1_4:43913578-43913597 None:intergenic 35.0%
AACACAAATGGTAAGGAGTT+AGG + chr1_4:43913783-43913802 None:intergenic 35.0%
! CTCCTTACCATTTGTGTTTT+AGG - chr1_4:43913785-43913804 Msa0164420:CDS 35.0%
TGATCATAACCTCATCAAGA+AGG - chr1_4:43913998-43914017 Msa0164420:intron 35.0%
CAGGCCAAAATATTCCATTA+TGG - chr1_4:43910715-43910734 Msa0164420:intron 35.0%
TCAAACTGATGGAACCATAA+TGG + chr1_4:43910732-43910751 None:intergenic 35.0%
! CATGGTGTCAATCTCAAATT+CGG + chr1_4:43914232-43914251 None:intergenic 35.0%
GAACTGGTATAATGAGCATA+TGG - chr1_4:43914272-43914291 Msa0164420:intron 35.0%
GGATCTAGCAGATGTAATAA+AGG - chr1_4:43914294-43914313 Msa0164420:intron 35.0%
GAAAAAAGAATGACGTGCAA+TGG + chr1_4:43910971-43910990 None:intergenic 35.0%
TTGCTCTTTATTCTGATGAG+TGG - chr1_4:43914605-43914624 Msa0164420:CDS 35.0%
! AATGTTTGTGCAGGGTTTTA+AGG - chr1_4:43914793-43914812 Msa0164420:intron 35.0%
!! ATGTTTGTGCAGGGTTTTAA+GGG - chr1_4:43914794-43914813 Msa0164420:intron 35.0%
CGAATTACCTCGAAAATACT+TGG + chr1_4:43914911-43914930 None:intergenic 35.0%
!! ATGAAGTTATTTTGTGTGGC+AGG - chr1_4:43911591-43911610 Msa0164420:intron 35.0%
TGGCAAAACATAACACTTCT+CGG + chr1_4:43915028-43915047 None:intergenic 35.0%
! ACATCTTTTGCAAGTAATCC+AGG + chr1_4:43915112-43915131 None:intergenic 35.0%
AAAAGTTGAAGAGTCTGTGG+TGG + chr1_4:43904878-43904897 None:intergenic 40.0%
AGGAAAAGTTGAAGAGTCTG+TGG + chr1_4:43904881-43904900 None:intergenic 40.0%
TGGGAAGTTAAAGGAAATGG+AGG + chr1_4:43904916-43904935 None:intergenic 40.0%
GTGTGGGAAGTTAAAGGAAA+TGG + chr1_4:43904919-43904938 None:intergenic 40.0%
TGTTCTGTGTGGGAAGTTAA+AGG + chr1_4:43904925-43904944 None:intergenic 40.0%
! TTGTTGTTGCTGTTCTGTGT+GGG + chr1_4:43904935-43904954 None:intergenic 40.0%
TGGAATGAAAATGAAGGAGG+TGG + chr1_4:43905011-43905030 None:intergenic 40.0%
! ATTGTTGTTCTTCCTCCTCA+TGG + chr1_4:43905031-43905050 None:intergenic 40.0%
ACAGAACTCAGACCTAAAAC+AGG - chr1_4:43905094-43905113 Msa0164420:three_prime_UTR 40.0%
AAGCAGAATCAACCCAATCA+AGG - chr1_4:43905117-43905136 Msa0164420:three_prime_UTR 40.0%
CAACAAAGAGTCTCCTTGAT+TGG + chr1_4:43905133-43905152 None:intergenic 40.0%
CAATCAAGGAGACTCTTTGT+TGG - chr1_4:43905131-43905150 Msa0164420:three_prime_UTR 40.0%
TCCAAAGAGTTGAGCCAATT+GGG + chr1_4:43905183-43905202 None:intergenic 40.0%
GGCTGGAAATGTTATATCTG+TGG - chr1_4:43905205-43905224 Msa0164420:three_prime_UTR 40.0%
! TGCAATTTGAGGGACCATTT+TGG + chr1_4:43905333-43905352 None:intergenic 40.0%
ATCGACATAGACATCAGACA+TGG + chr1_4:43905517-43905536 None:intergenic 40.0%
GACATCACAAATAGAAGCAG+AGG - chr1_4:43905723-43905742 Msa0164420:intron 40.0%
! TTGCGTTTGTTACAATGGAG+AGG - chr1_4:43905748-43905767 Msa0164420:intron 40.0%
! TGCGTTTGTTACAATGGAGA+GGG - chr1_4:43905749-43905768 Msa0164420:intron 40.0%
TGCAAAGTGTGCCAAAATCA+TGG - chr1_4:43905869-43905888 Msa0164420:three_prime_UTR 40.0%
AAAGTGTGCCAAAATCATGG+TGG - chr1_4:43905872-43905891 Msa0164420:three_prime_UTR 40.0%
! CAAGACTACCACCATGATTT+TGG + chr1_4:43905883-43905902 None:intergenic 40.0%
GTGCAGGTTGTTTATAAGGA+GGG + chr1_4:43905923-43905942 None:intergenic 40.0%
AGTGCAGGTTGTTTATAAGG+AGG + chr1_4:43905924-43905943 None:intergenic 40.0%
GGTATAAATTAGGCCCTGTT+TGG - chr1_4:43906150-43906169 Msa0164420:three_prime_UTR 40.0%
AGTTGGAGGTAGGGTTATTA+AGG - chr1_4:43906518-43906537 Msa0164420:three_prime_UTR 40.0%
! TGTACCCTTTTGCCTACTTT+GGG + chr1_4:43906561-43906580 None:intergenic 40.0%
! TTGTACCCTTTTGCCTACTT+TGG + chr1_4:43906562-43906581 None:intergenic 40.0%
! GTAGGCAAAAGGGTACAAAT+AGG - chr1_4:43906564-43906583 Msa0164420:intron 40.0%
TTCCAGCATAGATCTTGTGA+GGG + chr1_4:43906617-43906636 None:intergenic 40.0%
TTTCCAGCATAGATCTTGTG+AGG + chr1_4:43906618-43906637 None:intergenic 40.0%
AAGATCTATGCTGGAAACCT+TGG - chr1_4:43906621-43906640 Msa0164420:intron 40.0%
!! AAAGGCTTCTCTAAGATCCT+GGG + chr1_4:43906661-43906680 None:intergenic 40.0%
! GTTGCTTTGAGTGCTATGAA+CGG - chr1_4:43906786-43906805 Msa0164420:intron 40.0%
!!! ACTGTTTTTCAGGAGGTTCA+AGG - chr1_4:43906916-43906935 Msa0164420:intron 40.0%
CCAAATTCAGTCGTAAAGGT+CGG + chr1_4:43906942-43906961 None:intergenic 40.0%
ACAGCCAAATTCAGTCGTAA+AGG + chr1_4:43906946-43906965 None:intergenic 40.0%
TTTACGACTGAATTTGGCTG+TGG - chr1_4:43906945-43906964 Msa0164420:intron 40.0%
TGAATTTGGCTGTGGATAAC+AGG - chr1_4:43906953-43906972 Msa0164420:intron 40.0%
ATGCAGTAACCATGTTCAGT+TGG - chr1_4:43907404-43907423 Msa0164420:intron 40.0%
TTTGAAGAGCCAACTGAACA+TGG + chr1_4:43907416-43907435 None:intergenic 40.0%
! GCATGTACGTTTTTGCAGTA+TGG - chr1_4:43907537-43907556 Msa0164420:intron 40.0%
! TTTTTGCAGTATGGAACCTG+AGG - chr1_4:43907546-43907565 Msa0164420:intron 40.0%
GTGAAAGCTGAAATATCCTC+AGG + chr1_4:43907565-43907584 None:intergenic 40.0%
TCACCAAACTAAGGAACCTT+AGG - chr1_4:43907581-43907600 Msa0164420:intron 40.0%
TGACTTTAGGCGAAAATGAG+GGG + chr1_4:43908153-43908172 None:intergenic 40.0%
GTGACTTTAGGCGAAAATGA+GGG + chr1_4:43908154-43908173 None:intergenic 40.0%
AGTGACTTTAGGCGAAAATG+AGG + chr1_4:43908155-43908174 None:intergenic 40.0%
! CTGTACATTTTCCTCCCAAA+AGG - chr1_4:43908173-43908192 Msa0164420:intron 40.0%
CACGTCCCACATATATTCAT+TGG + chr1_4:43908230-43908249 None:intergenic 40.0%
CAATGAATATATGTGGGACG+TGG - chr1_4:43908228-43908247 Msa0164420:intron 40.0%
! TACCTTGTCGCAAAGTTTTG+AGG - chr1_4:43908486-43908505 Msa0164420:three_prime_UTR 40.0%
CTCTTGCCAAAATACTCTTG+AGG - chr1_4:43908606-43908625 Msa0164420:three_prime_UTR 40.0%
!! AACCACTTGGATTAGTCTAG+TGG - chr1_4:43908957-43908976 Msa0164420:intron 40.0%
!! TTGGATTAGTCTAGTGGTGT+TGG - chr1_4:43908963-43908982 Msa0164420:intron 40.0%
AACGAAGTTGGGTGAAAAGA+GGG + chr1_4:43909333-43909352 None:intergenic 40.0%
TAACGAAGTTGGGTGAAAAG+AGG + chr1_4:43909334-43909353 None:intergenic 40.0%
CAAGCGGATAGGAATGAAAT+TGG - chr1_4:43909539-43909558 Msa0164420:three_prime_UTR 40.0%
! TCCCGCTCATTTGCTTTATT+AGG + chr1_4:43909616-43909635 None:intergenic 40.0%
GAATTCTGCAACGAAACAAG+TGG - chr1_4:43909697-43909716 Msa0164420:intron 40.0%
!!! AGTGGACTGGTTGTTTGTTT+TGG - chr1_4:43909715-43909734 Msa0164420:intron 40.0%
AATAGATTTCGTGCCAACAG+TGG - chr1_4:43909747-43909766 Msa0164420:three_prime_UTR 40.0%
ATAGATTTCGTGCCAACAGT+GGG - chr1_4:43909748-43909767 Msa0164420:three_prime_UTR 40.0%
TGTATTGAAAGCAGGCACTT+CGG + chr1_4:43909788-43909807 None:intergenic 40.0%
!! ATTCCCAAGCTCACTTTTCA+GGG + chr1_4:43910063-43910082 None:intergenic 40.0%
! GTTAAAGTTCGTGCGTTTTG+AGG - chr1_4:43910101-43910120 Msa0164420:intron 40.0%
AAGGGGAAAAAGGTAGAATG+GGG + chr1_4:43910220-43910239 None:intergenic 40.0%
! CTCCTTACCATCTGTGTTTT+AGG - chr1_4:43910390-43910409 Msa0164420:intron 40.0%
! TAGGTTGGAGCAGATGAATT+TGG - chr1_4:43910409-43910428 Msa0164420:intron 40.0%
AGGTTGGAGCAGATGAATTT+GGG - chr1_4:43910410-43910429 Msa0164420:intron 40.0%
ATGTTGATACATCTGGCATG+CGG - chr1_4:43910464-43910483 Msa0164420:intron 40.0%
TGATCATAACCTCATCAAGC+AGG - chr1_4:43910603-43910622 Msa0164420:intron 40.0%
AGAGTCTTTAGCGATTCTCA+AGG + chr1_4:43910788-43910807 None:intergenic 40.0%
GGATCTAGCCGATGTAATAA+AGG - chr1_4:43910894-43910913 Msa0164420:intron 40.0%
!! GATGAAGTGGACTGAAATGT+TGG - chr1_4:43911220-43911239 Msa0164420:intron 40.0%
GACACTCAATGACGAATAGT+TGG - chr1_4:43911275-43911294 Msa0164420:intron 40.0%
GGTGTCAATGTTAAACCTGT+TGG - chr1_4:43911427-43911446 Msa0164420:intron 40.0%
AACAAATGCATCACCAACAC+CGG + chr1_4:43911458-43911477 None:intergenic 40.0%
!! GTTGGTGATGCATTTGTTAG+TGG - chr1_4:43911460-43911479 Msa0164420:intron 40.0%
!! TTATTTTGTGTGGCAGGATG+AGG - chr1_4:43911597-43911616 Msa0164420:intron 40.0%
! TGAAAAGGTGATGGTTAACG+GGG + chr1_4:43911759-43911778 None:intergenic 40.0%
! ACCATCACCTTTTCAAACTC+GGG - chr1_4:43911764-43911783 Msa0164420:intron 40.0%
AACCAAACCCGAGTTTGAAA+AGG + chr1_4:43911774-43911793 None:intergenic 40.0%
! AACAGATTTTCGCCTTTTGG+GGG + chr1_4:43911861-43911880 None:intergenic 40.0%
! GGAAACAGATTTTCGCCTTT+TGG + chr1_4:43911864-43911883 None:intergenic 40.0%
GATCTCAATTCTTGTGGTAG+TGG - chr1_4:43911901-43911920 Msa0164420:intron 40.0%
ATGCTCAAAACTTCTCTCCA+TGG - chr1_4:43911949-43911968 Msa0164420:intron 40.0%
! GTGTGAAGTGTCCATCATAT+AGG + chr1_4:43912201-43912220 None:intergenic 40.0%
CACTTCACACTCAAATGCAT+TGG - chr1_4:43912211-43912230 Msa0164420:intron 40.0%
! ACACTCAAATGCATTGGCAT+TGG - chr1_4:43912217-43912236 Msa0164420:intron 40.0%
CAGGTCGATGAAATTATCCA+TGG - chr1_4:43912240-43912259 Msa0164420:intron 40.0%
AGGCACCTTTGAATTTGTAG+AGG + chr1_4:43912273-43912292 None:intergenic 40.0%
!! CATCGGTCATTTTGAACATC+AGG + chr1_4:43912293-43912312 None:intergenic 40.0%
CTGATGTTCAAAATGACCGA+TGG - chr1_4:43912291-43912310 Msa0164420:intron 40.0%
CAAACTTGAAGGGCTTCAAT+AGG + chr1_4:43912348-43912367 None:intergenic 40.0%
GAAGAAACCTTTAATCCACG+AGG + chr1_4:43912375-43912394 None:intergenic 40.0%
TGAGTAAAAGGGTGAACTTG+AGG - chr1_4:43912457-43912476 Msa0164420:intron 40.0%
GAGTAAAAGGGTGAACTTGA+GGG - chr1_4:43912458-43912477 Msa0164420:intron 40.0%
GGTCGAAATCTCTAATGTTG+AGG - chr1_4:43912498-43912517 Msa0164420:intron 40.0%
TAAAGAGCAGTTGAGATCAG+AGG + chr1_4:43912792-43912811 None:intergenic 40.0%
GATCATGTTACCCGTATGAA+AGG - chr1_4:43912913-43912932 Msa0164420:intron 40.0%
!!! GCTTGTTTTGTTGGAGCTTT+CGG + chr1_4:43913103-43913122 None:intergenic 40.0%
GAAAGCTCCAACAAAACAAG+CGG - chr1_4:43913102-43913121 Msa0164420:intron 40.0%
AATAGGTTTCGTGCCATCAA+TGG - chr1_4:43913152-43913171 Msa0164420:intron 40.0%
ATAGGTTTCGTGCCATCAAT+GGG - chr1_4:43913153-43913172 Msa0164420:intron 40.0%
TTTCTTGTAAGCAGCCGTTT+CGG + chr1_4:43913193-43913212 None:intergenic 40.0%
!! ATTCCCAAGCTCACTTTTCA+GGG + chr1_4:43910063-43910082 None:intergenic 40.0%
ATGGGAAGTTACAGATGGTT+AGG + chr1_4:43913589-43913608 None:intergenic 40.0%
TGGAAATGGGAAGTTACAGA+TGG + chr1_4:43913594-43913613 None:intergenic 40.0%
AATAAGAAATGGGAGAAGGG+TGG + chr1_4:43913624-43913643 None:intergenic 40.0%
GCTCCAACCTAAAACACAAA+TGG + chr1_4:43913795-43913814 None:intergenic 40.0%
! TAGGTTGGAGCAAATGAATG+TGG - chr1_4:43913804-43913823 Msa0164420:CDS 40.0%
AGGTTGGAGCAAATGAATGT+GGG - chr1_4:43913805-43913824 Msa0164420:CDS 40.0%
ATGTTGATACATCTGGCATG+CGG - chr1_4:43910464-43910483 Msa0164420:intron 40.0%
AATAAAACCCAACGTGGTTC+TGG + chr1_4:43913898-43913917 None:intergenic 40.0%
!! TTAAAGGCACCTTCTTGATG+AGG + chr1_4:43914010-43914029 None:intergenic 40.0%
AGAGTCTTTAGCGATTCTCA+AGG + chr1_4:43910788-43910807 None:intergenic 40.0%
! CGAATTTGAGATTGACACCA+TGG - chr1_4:43914230-43914249 Msa0164420:intron 40.0%
TATTGTTACTGAAGGGTCGA+AGG - chr1_4:43914530-43914549 Msa0164420:intron 40.0%
ATTGTTACTGAAGGGTCGAA+GGG - chr1_4:43914531-43914550 Msa0164420:intron 40.0%
GGGTTGTAGATATTACACCA+AGG - chr1_4:43914551-43914570 Msa0164420:intron 40.0%
!! TGATGAGTGGACTGAAATGT+TGG - chr1_4:43914618-43914637 Msa0164420:CDS 40.0%
ACTAGCAGGTTGTAAACCAT+GGG - chr1_4:43914689-43914708 Msa0164420:intron 40.0%
AATCACTGTTAGCTGAATGC+TGG + chr1_4:43914769-43914788 None:intergenic 40.0%
! CTGGTGATGCATTTGTTAGT+GGG - chr1_4:43914861-43914880 Msa0164420:intron 40.0%
! TTCTGACCCAAGTATTTTCG+AGG - chr1_4:43914901-43914920 Msa0164420:intron 40.0%
!! TTATTTTGTGTGGCAGGATG+AGG - chr1_4:43911597-43911616 Msa0164420:intron 40.0%
CCTATATTGCATCAGATTGC+TGG + chr1_4:43915138-43915157 None:intergenic 40.0%
CCAGCAATCTGATGCAATAT+AGG - chr1_4:43915135-43915154 Msa0164420:intron 40.0%
! TCAGAAGGTTAGTCACTCTA+CGG + chr1_4:43915194-43915213 None:intergenic 40.0%
GACATCAAAACCAAGTCAGA+AGG + chr1_4:43915209-43915228 None:intergenic 40.0%
GTACTGCAACATTCAAGCTT+TGG - chr1_4:43915247-43915266 Msa0164420:CDS 40.0%
! GTTGTTGTTGCTGTTCTGTG+TGG + chr1_4:43904936-43904955 None:intergenic 45.0%
ATGAAGGAGGTGGATGAAGA+GGG + chr1_4:43905001-43905020 None:intergenic 45.0%
AATGAAGGAGGTGGATGAAG+AGG + chr1_4:43905002-43905021 None:intergenic 45.0%
! TCCCAATTGGCTCAACTCTT+TGG - chr1_4:43905179-43905198 Msa0164420:three_prime_UTR 45.0%
CTCCAAAGAGTTGAGCCAAT+TGG + chr1_4:43905184-43905203 None:intergenic 45.0%
! ATTGGCTCAACTCTTTGGAG+AGG - chr1_4:43905184-43905203 Msa0164420:three_prime_UTR 45.0%
!!! TGAGGGACCATTTTGGAATG+AGG + chr1_4:43905326-43905345 None:intergenic 45.0%
! GTTTGTTACAATGGAGAGGG+TGG - chr1_4:43905752-43905771 Msa0164420:intron 45.0%
GATGTTGTACAGACAGTTGG+AGG - chr1_4:43906504-43906523 Msa0164420:three_prime_UTR 45.0%
TTGTACAGACAGTTGGAGGT+AGG - chr1_4:43906508-43906527 Msa0164420:three_prime_UTR 45.0%
TGTACAGACAGTTGGAGGTA+GGG - chr1_4:43906509-43906528 Msa0164420:three_prime_UTR 45.0%
AAGTGCCCAAAGTAGGCAAA+AGG - chr1_4:43906553-43906572 Msa0164420:intron 45.0%
AGTGCCCAAAGTAGGCAAAA+GGG - chr1_4:43906554-43906573 Msa0164420:intron 45.0%
TCTATGCTGGAAACCTTGGT+TGG - chr1_4:43906625-43906644 Msa0164420:intron 45.0%
CTATGCTGGAAACCTTGGTT+GGG - chr1_4:43906626-43906645 Msa0164420:intron 45.0%
!! CAAAGGCTTCTCTAAGATCC+TGG + chr1_4:43906662-43906681 None:intergenic 45.0%
TAAGCCTGATTGCTCAGCAA+AGG + chr1_4:43906679-43906698 None:intergenic 45.0%
GTCGTCTACGAAAGGAACAA+CGG - chr1_4:43906711-43906730 Msa0164420:intron 45.0%
AGGAACAACGGAAAATCTCG+CGG - chr1_4:43906723-43906742 Msa0164420:intron 45.0%
AACGGAAAATCTCGCGGATA+TGG - chr1_4:43906729-43906748 Msa0164420:intron 45.0%
TGTCTCTTTCGAAACTGCTG+AGG - chr1_4:43906755-43906774 Msa0164420:intron 45.0%
CCGACCTTTACGACTGAATT+TGG - chr1_4:43906939-43906958 Msa0164420:intron 45.0%
TCAATTACCGGAGGAGATGA+AGG + chr1_4:43906982-43907001 None:intergenic 45.0%
! AGGATCTTCTACCTTTTGGG+AGG + chr1_4:43908187-43908206 None:intergenic 45.0%
GACGTGGGACTCTTTCAAAA+CGG - chr1_4:43908244-43908263 Msa0164420:intron 45.0%
TGGGACTCTTTCAAAACGGT+GGG - chr1_4:43908248-43908267 Msa0164420:intron 45.0%
CACCACTAGACTAATCCAAG+TGG + chr1_4:43908962-43908981 None:intergenic 45.0%
CAAGGAGCTGTATTGAAAGC+AGG + chr1_4:43909796-43909815 None:intergenic 45.0%
GCTTTCAATACAGCTCCTTG+TGG - chr1_4:43909796-43909815 Msa0164420:three_prime_UTR 45.0%
CAATACAGCTCCTTGTGGTA+CGG - chr1_4:43909801-43909820 Msa0164420:three_prime_UTR 45.0%
AACTCCCTGAAAAGTGAGCT+TGG - chr1_4:43910056-43910075 Msa0164420:intron 45.0%
ACTCCCTGAAAAGTGAGCTT+GGG - chr1_4:43910057-43910076 Msa0164420:intron 45.0%
!! CATTCCCAAGCTCACTTTTC+AGG + chr1_4:43910064-43910083 None:intergenic 45.0%
GCTCCAACCTAAAACACAGA+TGG + chr1_4:43910400-43910419 None:intergenic 45.0%
!! TTAAAGGCACCTGCTTGATG+AGG + chr1_4:43910615-43910634 None:intergenic 45.0%
TGGCTCGTCAATCAAACTGA+TGG + chr1_4:43910743-43910762 None:intergenic 45.0%
TATACCATTTCGAGCAGCCT+CGG + chr1_4:43910863-43910882 None:intergenic 45.0%
TGACTTTGGCAAGCTTACCT+TGG + chr1_4:43911172-43911191 None:intergenic 45.0%
GTTAAACCTGTTGGCACAAC+CGG - chr1_4:43911436-43911455 Msa0164420:intron 45.0%
ACCCGAGTTTGAAAAGGTGA+TGG + chr1_4:43911768-43911787 None:intergenic 45.0%
! CACCTTTTCAAACTCGGGTT+TGG - chr1_4:43911769-43911788 Msa0164420:intron 45.0%
!! CAAACTCGGGTTTGGTTTGA+AGG - chr1_4:43911777-43911796 Msa0164420:intron 45.0%
!! GTTTGGTTTGAAGGCAGACA+AGG - chr1_4:43911786-43911805 Msa0164420:intron 45.0%
CTGAATGTCTTCGCCAACTA+GGG - chr1_4:43911812-43911831 Msa0164420:intron 45.0%
TGAATGTCTTCGCCAACTAG+GGG - chr1_4:43911813-43911832 Msa0164420:intron 45.0%
!! TCAAATGCATTGGCATTGGC+AGG - chr1_4:43912221-43912240 Msa0164420:intron 45.0%
TTTGTAGAGGACAACAGCCA+TGG + chr1_4:43912260-43912279 None:intergenic 45.0%
CAGATGAAAAGGATGTCTCG+TGG + chr1_4:43912402-43912421 None:intergenic 45.0%
GGTGAACTTGAGGGATCTAT+TGG - chr1_4:43912467-43912486 Msa0164420:intron 45.0%
TCTAATGTTGAGGTGAGACG+TGG - chr1_4:43912508-43912527 Msa0164420:intron 45.0%
!! GAGACGTGGACTATTGATTC+TGG - chr1_4:43912522-43912541 Msa0164420:intron 45.0%
!! GAAAGAAGTTCTAAAGCCCG+TGG - chr1_4:43912606-43912625 Msa0164420:intron 45.0%
TGACTAGGATCATCAACCAC+GGG + chr1_4:43912625-43912644 None:intergenic 45.0%
GTGACTAGGATCATCAACCA+CGG + chr1_4:43912626-43912645 None:intergenic 45.0%
AACGTTGAGCTACTGTGACT+AGG + chr1_4:43912640-43912659 None:intergenic 45.0%
!!! AACCAGTCCGCTTGTTTTGT+TGG + chr1_4:43913112-43913131 None:intergenic 45.0%
!!! AGCGGACTGGTTGTTTGTTT+TGG - chr1_4:43913120-43913139 Msa0164420:intron 45.0%
GCTTACAAGAAAGCTCCTTG+TGG - chr1_4:43913201-43913220 Msa0164420:intron 45.0%
GCAGTTGGCATCTCTAAGTT+GGG - chr1_4:43909832-43909851 Msa0164420:three_prime_UTR 45.0%
CAGTTGGCATCTCTAAGTTG+GGG - chr1_4:43909833-43909852 Msa0164420:three_prime_UTR 45.0%
! AGTTGGCATCTCTAAGTTGG+GGG - chr1_4:43909834-43909853 Msa0164420:three_prime_UTR 45.0%
AACTCCCTGAAAAGTGAGCT+TGG - chr1_4:43910056-43910075 Msa0164420:intron 45.0%
ACTCCCTGAAAAGTGAGCTT+GGG - chr1_4:43910057-43910076 Msa0164420:intron 45.0%
!! CATTCCCAAGCTCACTTTTC+AGG + chr1_4:43910064-43910083 None:intergenic 45.0%
AAATGGGAGAAGGGTGGAAT+GGG + chr1_4:43913618-43913637 None:intergenic 45.0%
TTCTAATGCCAGAACCACGT+TGG - chr1_4:43913887-43913906 Msa0164420:intron 45.0%
TCTAATGCCAGAACCACGTT+GGG - chr1_4:43913888-43913907 Msa0164420:intron 45.0%
GCATATCAGCGCTAGGATTT+CGG + chr1_4:43913959-43913978 None:intergenic 45.0%
!!! TCCTAGCGCTGATATGCTTT+TGG - chr1_4:43913962-43913981 Msa0164420:intron 45.0%
! TCCAAAAGCATATCAGCGCT+AGG + chr1_4:43913966-43913985 None:intergenic 45.0%
TGGCTCGTCAATCAAACTGA+TGG + chr1_4:43910743-43910762 None:intergenic 45.0%
TGACTTTGGCAAGCTTACCT+TGG + chr1_4:43911172-43911191 None:intergenic 45.0%
GACTAGCAGGTTGTAAACCA+TGG - chr1_4:43914688-43914707 Msa0164420:intron 45.0%
! GCTGGTGATGCATTTGTTAG+TGG - chr1_4:43914860-43914879 Msa0164420:intron 45.0%
CATTGTATGTGGCGTGATCA+CGG - chr1_4:43915046-43915065 Msa0164420:intron 45.0%
ATTGTATGTGGCGTGATCAC+GGG - chr1_4:43915047-43915066 Msa0164420:intron 45.0%
GAGTGACTAACCTTCTGACT+TGG - chr1_4:43915196-43915215 Msa0164420:intron 45.0%
!!! TAATAAATTTAAGATATTTT+TGG - chr1_4:43905628-43905647 Msa0164420:intron 5.0%
!! TATAAATATAAATATGAAAA+GGG + chr1_4:43907878-43907897 None:intergenic 5.0%
!! ATATAAATATAAATATGAAA+AGG + chr1_4:43907879-43907898 None:intergenic 5.0%
!!! TTAATATGTAATTTTTTTTT+AGG + chr1_4:43908373-43908392 None:intergenic 5.0%
!!! AATATACTTTATTTTATATT+TGG - chr1_4:43908577-43908596 Msa0164420:three_prime_UTR 5.0%
!!! TGTATAATTTTAATTTAATA+CGG - chr1_4:43910686-43910705 Msa0164420:intron 5.0%
!! ATAATAAATTATTATTATCA+CGG - chr1_4:43912049-43912068 Msa0164420:intron 5.0%
AGAGTCTGTGGTGGCAGATA+GGG + chr1_4:43904869-43904888 None:intergenic 50.0%
AAGAGTCTGTGGTGGCAGAT+AGG + chr1_4:43904870-43904889 None:intergenic 50.0%
!! TGGCGTTGACGTGTTATGTC+AGG - chr1_4:43905488-43905507 Msa0164420:three_prime_UTR 50.0%
TGTTACAATGGAGAGGGTGG+AGG - chr1_4:43905755-43905774 Msa0164420:intron 50.0%
! GTTTATAAGGAGGGTGCAGC+AGG + chr1_4:43905914-43905933 None:intergenic 50.0%
! CCAGGTTCAAGTGATAGTGC+AGG + chr1_4:43905939-43905958 None:intergenic 50.0%
CCTGCACTATCACTTGAACC+TGG - chr1_4:43905936-43905955 Msa0164420:intron 50.0%
!! TTCCCAGAAGTGCCCAAAGT+AGG - chr1_4:43906546-43906565 Msa0164420:intron 50.0%
TGCCTACTTTGGGCACTTCT+GGG + chr1_4:43906551-43906570 None:intergenic 50.0%
TTGCCTACTTTGGGCACTTC+TGG + chr1_4:43906552-43906571 None:intergenic 50.0%
AGCCCTCACAAGATCTATGC+TGG - chr1_4:43906612-43906631 Msa0164420:intron 50.0%
GGGAAGTCATATCCCAACCA+AGG + chr1_4:43906641-43906660 None:intergenic 50.0%
TGGTTGGGATATGACTTCCC+AGG - chr1_4:43906641-43906660 Msa0164420:intron 50.0%
GAAGCCTTTGCTGAGCAATC+AGG - chr1_4:43906672-43906691 Msa0164420:intron 50.0%
AATCAGGCTTACTGAGTGCC+AGG - chr1_4:43906688-43906707 Msa0164420:intron 50.0%
ATCAGGCTTACTGAGTGCCA+GGG - chr1_4:43906689-43906708 Msa0164420:intron 50.0%
CGAAACTGCTGAGGATGTAG+AGG - chr1_4:43906764-43906783 Msa0164420:intron 50.0%
TTTGAGTGCTATGAACGGCG+TGG - chr1_4:43906791-43906810 Msa0164420:intron 50.0%
AGGGACCACTTTGAACAGAG+GGG + chr1_4:43907081-43907100 None:intergenic 50.0%
GAGGGACCACTTTGAACAGA+GGG + chr1_4:43907082-43907101 None:intergenic 50.0%
TGAGGGACCACTTTGAACAG+AGG + chr1_4:43907083-43907102 None:intergenic 50.0%
AGTCGACTGCACGGTAAAGT+CGG + chr1_4:43907229-43907248 None:intergenic 50.0%
ACAGTCTACAGTCGACTGCA+CGG + chr1_4:43907238-43907257 None:intergenic 50.0%
CGCTGCAGCCGATTATAGAT+CGG + chr1_4:43907296-43907315 None:intergenic 50.0%
GTGGGACTCTTTCAAAACGG+TGG - chr1_4:43908247-43908266 Msa0164420:intron 50.0%
GCGACAAGGTAGTTTGAGAG+AGG + chr1_4:43908477-43908496 None:intergenic 50.0%
CGCCTCAAAACTTTGCGACA+AGG + chr1_4:43908491-43908510 None:intergenic 50.0%
AAAAAGGTAGCCCATGGCGA+GGG + chr1_4:43909116-43909135 None:intergenic 50.0%
CTGCAACGAAACAAGTGGAC+TGG - chr1_4:43909702-43909721 Msa0164420:intron 50.0%
GATTGACGAGCCATGCAAGT+CGG - chr1_4:43910750-43910769 Msa0164420:intron 50.0%
! CTTGAGCAAGGTTTGGTTCG+AGG - chr1_4:43911306-43911325 Msa0164420:intron 50.0%
TTTGTGTGGCAGGATGAGGA+AGG - chr1_4:43911601-43911620 Msa0164420:intron 50.0%
! GAAGTCTGAGGTTCGAGAAC+AGG + chr1_4:43911730-43911749 None:intergenic 50.0%
GTGATGGTTAACGGGGCAAT+CGG + chr1_4:43911752-43911771 None:intergenic 50.0%
GCTGAATGTCTTCGCCAACT+AGG - chr1_4:43911811-43911830 Msa0164420:intron 50.0%
CCTGCAATATGAAGGGACCA+TGG + chr1_4:43911969-43911988 None:intergenic 50.0%
CCATGGTCCCTTCATATTGC+AGG - chr1_4:43911966-43911985 Msa0164420:intron 50.0%
ACGAGGCGCACAAACTTGAA+GGG + chr1_4:43912358-43912377 None:intergenic 50.0%
! TTGTGCGCCTCGTGGATTAA+AGG - chr1_4:43912365-43912384 Msa0164420:intron 50.0%
GAACATCACTGATGCTGTCC+AGG - chr1_4:43912660-43912679 Msa0164420:intron 50.0%
ACTTACCTTGGTTGCTTGCC+TGG + chr1_4:43912681-43912700 None:intergenic 50.0%
CTCCAACAAAACAAGCGGAC+TGG - chr1_4:43913107-43913126 Msa0164420:intron 50.0%
GGCAGTTGGCATCTCTAAGT+TGG - chr1_4:43909831-43909850 Msa0164420:three_prime_UTR 50.0%
! GTTGGCATCTCTAAGTTGGG+GGG - chr1_4:43909835-43909854 Msa0164420:three_prime_UTR 50.0%
AATGGGAGAAGGGTGGAATG+GGG + chr1_4:43913617-43913636 None:intergenic 50.0%
GAAATGGGAGAAGGGTGGAA+TGG + chr1_4:43913619-43913638 None:intergenic 50.0%
GATTGACGAGCCATGCAAGT+CGG - chr1_4:43910750-43910769 Msa0164420:intron 50.0%
CACTCTCAATGACGACTAGC+AGG - chr1_4:43914675-43914694 Msa0164420:intron 50.0%
CAGGTTGTAAACCATGGGCA+AGG - chr1_4:43914694-43914713 Msa0164420:intron 50.0%
CTCAAAGCAAACCTTGCCCA+TGG + chr1_4:43914708-43914727 None:intergenic 50.0%
! CATGGGCAAGGTTTGCTTTG+AGG - chr1_4:43914706-43914725 Msa0164420:intron 50.0%
CGTGATCACGCCACATACAA+TGG + chr1_4:43915048-43915067 None:intergenic 50.0%
TTGTATGTGGCGTGATCACG+GGG - chr1_4:43915048-43915067 Msa0164420:intron 50.0%
TCTGTGGTGGCAGATAGGGA+AGG + chr1_4:43904865-43904884 None:intergenic 55.0%
! GCTCAACTCTTTGGAGAGGC+TGG - chr1_4:43905188-43905207 Msa0164420:three_prime_UTR 55.0%
GTTCCTTTCGTAGACGACCC+TGG + chr1_4:43906709-43906728 None:intergenic 55.0%
CAGGAAGCCTTCATCTCCTC+CGG - chr1_4:43906972-43906991 Msa0164420:intron 55.0%
TCCTCCCCCTCTGTTCAAAG+TGG - chr1_4:43907073-43907092 Msa0164420:intron 55.0%
ACCACTTTGAACAGAGGGGG+AGG + chr1_4:43907077-43907096 None:intergenic 55.0%
GGGACCACTTTGAACAGAGG+GGG + chr1_4:43907080-43907099 None:intergenic 55.0%
AAAAGGTAGCCCATGGCGAG+GGG + chr1_4:43909115-43909134 None:intergenic 55.0%
CAAAAAGGTAGCCCATGGCG+AGG + chr1_4:43909117-43909136 None:intergenic 55.0%
! CTTTTGACCCGTGCGTTGCA+CGG - chr1_4:43909426-43909445 Msa0164420:intron 55.0%
! TTTTGACCCGTGCGTTGCAC+GGG - chr1_4:43909427-43909446 Msa0164420:intron 55.0%
AGAAAACCCGTGCAACGCAC+GGG + chr1_4:43909436-43909455 None:intergenic 55.0%
GAGAAAACCCGTGCAACGCA+CGG + chr1_4:43909437-43909456 None:intergenic 55.0%
GATTTCGTGCCAACAGTGGG+TGG - chr1_4:43909751-43909770 Msa0164420:three_prime_UTR 55.0%
AGAGACACTCCACCCACTGT+TGG + chr1_4:43909763-43909782 None:intergenic 55.0%
TCCTTGTGGTACGGCAAACG+TGG - chr1_4:43909810-43909829 Msa0164420:three_prime_UTR 55.0%
!! GCAAGATGAGCCGACTTGCA+TGG + chr1_4:43910763-43910782 None:intergenic 55.0%
! GTCTGAGGTTCGAGAACAGG+CGG + chr1_4:43911727-43911746 None:intergenic 55.0%
TGGCTTCGATGTCCCCCAAA+AGG - chr1_4:43911846-43911865 Msa0164420:intron 55.0%
CACGAGGCGCACAAACTTGA+AGG + chr1_4:43912359-43912378 None:intergenic 55.0%
! CTTCAAGTTTGTGCGCCTCG+TGG - chr1_4:43912357-43912376 Msa0164420:intron 55.0%
GGTTTCGTGCCATCAATGGG+TGG - chr1_4:43913156-43913175 Msa0164420:intron 55.0%
TTGTAAGCAGCCGTTTCGGC+TGG + chr1_4:43913189-43913208 None:intergenic 55.0%
TCCTTGTGGTACCGCAAACG+TGG - chr1_4:43913215-43913234 Msa0164420:intron 55.0%
GATGCCAACTGCCACGTTTG+CGG + chr1_4:43909824-43909843 None:intergenic 55.0%
GGGTGGAATGGGGTGGAAAT+GGG + chr1_4:43913607-43913626 None:intergenic 55.0%
AGGGTGGAATGGGGTGGAAA+TGG + chr1_4:43913608-43913627 None:intergenic 55.0%
!! GCAAGATGAGCCGACTTGCA+TGG + chr1_4:43910763-43910782 None:intergenic 55.0%
CCAGCACCAGTTGTGTCAAC+AGG + chr1_4:43914845-43914864 None:intergenic 55.0%
CCTGTTGACACAACTGGTGC+TGG - chr1_4:43914842-43914861 Msa0164420:intron 55.0%
ACAGAGAGAGGGGCAATTCC+TGG - chr1_4:43915091-43915110 Msa0164420:intron 55.0%
GTGCCAGGGTCGTCTACGAA+AGG - chr1_4:43906703-43906722 Msa0164420:intron 60.0%
AGATCATGCCCCCTCGCCAT+GGG - chr1_4:43909103-43909122 Msa0164420:intron 60.0%
AAAGGTAGCCCATGGCGAGG+GGG + chr1_4:43909114-43909133 None:intergenic 60.0%
GCCACGTTTGCCGTACCACA+AGG + chr1_4:43909814-43909833 None:intergenic 60.0%
GACACTATGGCCATCAGCCG+AGG - chr1_4:43910843-43910862 Msa0164420:intron 60.0%
TTTCGAGCAGCCTCGGCTGA+TGG + chr1_4:43910856-43910875 None:intergenic 60.0%
TCAGCCGAGGCTGCTCGAAA+TGG - chr1_4:43910856-43910875 Msa0164420:intron 60.0%
! CCAACACCGGTTGTGCCAAC+AGG + chr1_4:43911445-43911464 None:intergenic 60.0%
CCTGTTGGCACAACCGGTGT+TGG - chr1_4:43911442-43911461 Msa0164420:intron 60.0%
GTGGAGAAGTAGGTCGGGAG+TGG + chr1_4:43911702-43911721 None:intergenic 60.0%
CGGCAGTGGAGAAGTAGGTC+GGG + chr1_4:43911707-43911726 None:intergenic 60.0%
GCGGCAGTGGAGAAGTAGGT+CGG + chr1_4:43911708-43911727 None:intergenic 60.0%
ACAGGCGGCAGTGGAGAAGT+AGG + chr1_4:43911712-43911731 None:intergenic 60.0%
ACGGGGCAATCGGAAGTCTG+AGG + chr1_4:43911742-43911761 None:intergenic 60.0%
GCTGTCCAGGCAAGCAACCA+AGG - chr1_4:43912673-43912692 Msa0164420:intron 60.0%
GGAGACGCTCCACCCATTGA+TGG + chr1_4:43913168-43913187 None:intergenic 60.0%
! TGGAGCGTCTCCAGCCGAAA+CGG - chr1_4:43913176-43913195 Msa0164420:intron 60.0%
GCCACGTTTGCGGTACCACA+AGG + chr1_4:43913219-43913238 None:intergenic 60.0%
GGTACCGCAAACGTGGCAGT+TGG - chr1_4:43913222-43913241 Msa0164420:intron 60.0%
GACACCATGGCCATCAGACG+AGG - chr1_4:43914243-43914262 Msa0164420:intron 60.0%
GTTCGAGCAGCCTCGTCTGA+TGG + chr1_4:43914256-43914275 None:intergenic 60.0%
TCAGACGAGGCTGCTCGAAC+TGG - chr1_4:43914256-43914275 Msa0164420:intron 60.0%
ATGTGGCGTGATCACGGGGA+CGG - chr1_4:43915052-43915071 Msa0164420:intron 60.0%
TGATCACGGGGACGGAGAGA+GGG - chr1_4:43915060-43915079 Msa0164420:intron 60.0%
GAGATCATGCCCCCTCGCCA+TGG - chr1_4:43909102-43909121 Msa0164420:intron 65.0%
GGTTCGAGAACAGGCGGCAG+TGG + chr1_4:43911721-43911740 None:intergenic 65.0%
GGGAGAAGGGTGGAATGGGG+TGG + chr1_4:43913614-43913633 None:intergenic 65.0%
GCAGCCTCGTCTGATGGCCA+TGG + chr1_4:43914250-43914269 None:intergenic 65.0%
GTGATCACGGGGACGGAGAG+AGG - chr1_4:43915059-43915078 Msa0164420:intron 65.0%
GATCACGGGGACGGAGAGAG+GGG - chr1_4:43915061-43915080 Msa0164420:intron 65.0%
! AGGGGCACGGGGACAGAGAG+AGG - chr1_4:43915079-43915098 Msa0164420:intron 70.0%
GGGGCACGGGGACAGAGAGA+GGG - chr1_4:43915080-43915099 Msa0164420:intron 70.0%
GGGCACGGGGACAGAGAGAG+GGG - chr1_4:43915081-43915100 Msa0164420:intron 70.0%
CGGGGACGGAGAGAGGGGCA+CGG - chr1_4:43915066-43915085 Msa0164420:intron 75.0%
! GGGGACGGAGAGAGGGGCAC+GGG - chr1_4:43915067-43915086 Msa0164420:intron 75.0%
! GGGACGGAGAGAGGGGCACG+GGG - chr1_4:43915068-43915087 Msa0164420:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 43904840 43915528 43904840 ID=Msa0164420;Name=Msa0164420
chr1_4 mRNA 43904840 43915528 43904840 ID=Msa0164420-mRNA-1;Parent=Msa0164420;Name=Msa0164420-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.94|0.94|1|0.88|0.73|19|2885|279
chr1_4 exon 43904840 43905273 43904840 ID=Msa0164420-mRNA-1:exon:12587;Parent=Msa0164420-mRNA-1
chr1_4 exon 43905295 43905357 43905295 ID=Msa0164420-mRNA-1:exon:12586;Parent=Msa0164420-mRNA-1
chr1_4 exon 43905446 43905562 43905446 ID=Msa0164420-mRNA-1:exon:12585;Parent=Msa0164420-mRNA-1
chr1_4 exon 43905796 43905936 43905796 ID=Msa0164420-mRNA-1:exon:12584;Parent=Msa0164420-mRNA-1
chr1_4 exon 43906053 43906250 43906053 ID=Msa0164420-mRNA-1:exon:12583;Parent=Msa0164420-mRNA-1
chr1_4 exon 43906349 43906561 43906349 ID=Msa0164420-mRNA-1:exon:12582;Parent=Msa0164420-mRNA-1
chr1_4 exon 43907084 43907289 43907084 ID=Msa0164420-mRNA-1:exon:12581;Parent=Msa0164420-mRNA-1
chr1_4 exon 43907674 43907869 43907674 ID=Msa0164420-mRNA-1:exon:12580;Parent=Msa0164420-mRNA-1
chr1_4 exon 43907982 43908125 43907982 ID=Msa0164420-mRNA-1:exon:12579;Parent=Msa0164420-mRNA-1
chr1_4 exon 43908381 43908755 43908381 ID=Msa0164420-mRNA-1:exon:12578;Parent=Msa0164420-mRNA-1
chr1_4 exon 43908846 43908962 43908846 ID=Msa0164420-mRNA-1:exon:12577;Parent=Msa0164420-mRNA-1
chr1_4 exon 43909195 43909335 43909195 ID=Msa0164420-mRNA-1:exon:12576;Parent=Msa0164420-mRNA-1
chr1_4 exon 43909453 43909650 43909453 ID=Msa0164420-mRNA-1:exon:12575;Parent=Msa0164420-mRNA-1
chr1_4 exon 43909744 43909956 43909744 ID=Msa0164420-mRNA-1:exon:12574;Parent=Msa0164420-mRNA-1
chr1_4 exon 43910489 43910616 43910489 ID=Msa0164420-mRNA-1:exon:12573;Parent=Msa0164420-mRNA-1
chr1_4 exon 43913308 43913440 43913308 ID=Msa0164420-mRNA-1:exon:12572;Parent=Msa0164420-mRNA-1
chr1_4 exon 43913556 43913852 43913556 ID=Msa0164420-mRNA-1:exon:12571;Parent=Msa0164420-mRNA-1
chr1_4 exon 43914556 43914657 43914556 ID=Msa0164420-mRNA-1:exon:12570;Parent=Msa0164420-mRNA-1
chr1_4 exon 43915220 43915528 43915220 ID=Msa0164420-mRNA-1:exon:12569;Parent=Msa0164420-mRNA-1
chr1_4 CDS 43915220 43915528 43915220 ID=Msa0164420-mRNA-1:cds;Parent=Msa0164420-mRNA-1
chr1_4 CDS 43914556 43914657 43914556 ID=Msa0164420-mRNA-1:cds;Parent=Msa0164420-mRNA-1
chr1_4 CDS 43913556 43913852 43913556 ID=Msa0164420-mRNA-1:cds;Parent=Msa0164420-mRNA-1
chr1_4 CDS 43913309 43913440 43913309 ID=Msa0164420-mRNA-1:cds;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43913308 43913308 43913308 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43910489 43910616 43910489 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43909744 43909956 43909744 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43909453 43909650 43909453 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43909195 43909335 43909195 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43908846 43908962 43908846 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43908381 43908755 43908381 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43907982 43908125 43907982 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43907674 43907869 43907674 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43907084 43907289 43907084 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43906349 43906561 43906349 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43906053 43906250 43906053 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43905796 43905936 43905796 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43905446 43905562 43905446 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43905295 43905357 43905295 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
chr1_4 three_prime_UTR 43904840 43905273 43904840 ID=Msa0164420-mRNA-1:three_prime_utr;Parent=Msa0164420-mRNA-1
Gene Sequence

>Msa0164420

ATGGCTAGTGCAAGCACTGGTTCCTTCCCTATCTGCCACCACAGACTCTTCAACTTTTCCTTTACTACTCATTCCTCCATTTCCTTTAACTTCCCACACAGAACAGCAACAACAACCATTTCTACAAAACCCTTCAATTTAATCCCTCAATTATTCAACCCTCTTCATCCACCTCCTTCATTTTCATTCCATGAGGAGGAAGAACAACAATACTCTGAATCTGAATCTGAATCTGAAACTGAAATTGAAACCTTACAGAACTCAGACCTAAAACAGGAAGCAGAATCAACCCAATCAAGGAGACTCTTTATTGTGTATGATGACATCACAAATAGAAGCAGAGGATTTGCGTTTGTTACAATGGAGAGGGTGGAGGATGCTGAAGAATCAATTCGAATGTTTGATGGCACTACAGTTGGAGGTAGGGTTATTAAGGTGAACTTCCCAGAAGTGCCCAAAGTAGGCAAAAGGGTACAAATAGGCTCAAACTATAGAGGTTATGTTGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTGAGCAATCAGGCTTACTGAGTGCCAGGGTCGTCTACGAAAGGAACAACGGAAAATCTCGCGGATATGGATTTGTCTCTTTCGAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAACGGCGTGGAGGTTCAAGGCCGACCTTTACGACTGAATTTGGCTGTGGATAACAGGAAGCCTTCATCTCCTCCGGTAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGCAAATGA
Protein sequence

>Msa0164420

MASASTGSFPICHHRLFNFSFTTHSSISFNFPHRTATTTISTKPFNLIPQLFNPLHPPPSFSFHEEEEQQYSESESESETEIETLQNSDLKQEAESTQSRRLFIVYDDITNRSRGFAFVTMERVEDAEESIRMFDGTTVGGRVIKVNFPEVPKVGKRVQIGSNYRGYVDSPHKIYAGNLGWDMTSQDLREAFAEQSGLLSARVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLNLAVDNRKPSSPPVIDQNKGNNVDSLEMLFGISK*